source: qipapers.bib @ 67

@article{Vulovic2010,
  author = {Vulovic, M. and Rieger, B. and Vliet, L.J. van and Koster, A.J. and Ravelli, R.B.G.},
  title = {A toolkit for the characterization of CCD cameras for transmission electron microscopy},
  journal = {Acta Crystallographica Section D},
  year = {2010},
  volume = {66},
  pages = {97-109}
}
@article{Weber1981,
  author = {Weber, G.},
  title = {Resolution of the Fluorescence Lifetimes in a Heterogeneous System by Phase and Modulation Measurements},
  journal = {Journal of Physical Chemistry},
  year = {1981},
  volume = {85},
  pages = {949-953}
}
@article{Geman1984,
  author = {Geman, S. and Geman, D.},
  title = {Stochastic Relaxation, {Gibbs} Distributions, and the {Bayesian} Restoration of Images},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1984},
  volume = {6},
  number = {6},
  pages = {721--741},
  month = {November}
}
@article{Fernandez2006,
  author = {Fernandez, J.J. and Li, S. and Crowther, R.A.},
  title = {{CTF} determination and correction in electron cryotomography},
  journal = {Ultramicroscopy},
  year = {2006},
  volume = {106},
  pages = {587-596}
}
@article{Clemons2001,
  author = {Clemons, W.M. Jr. and Brodersen, D.E. and McCutcheon, J.P. and May, J.L.C. and Carter, A.P. and Morgan-Warren, R.J. and Wimberly, B.T. and Ramakrishnan, V.},
  title = {Crystal Structure of the {30S} Ribosomal Subunit from Thermus thermophilus: Purification, Crystallization and Structure Determination},
  journal = {Journal of Molecualar Biology},
  year = {2001},
  volume = {310},
  pages = {827-843}
}
@article{Keller2006,
  author = {Keller, Y. and Shkolnisky, Y.},
  title = {A Signal Processing Approach to Symmetry Detection},
  journal = {IEEE Transactions on Image Processing},
  year = {2006},
  volume = {15},
  number = {8},
  pages = {2198-2207}
}
@book{Hilbert2001,
  author = {Hilbert, D.},
  title = {Foundations of Geometry},
  year = {1971},
  publisher = {Open Court},
  address = { La Salle, Illinois}
}
@article{Gabor1946,
  author = {Gabor, D.},
  title = {Theory of Communication},
  journal = {Journal of the Institution of Electrical Engineers},
  year = {1946},
  volume = {93, Part III},
  number = {26},
  pages = {429--457},
  month = {November}
}
@inproceedings{Vliet1998,
  author = {Vliet, L.J. van and Young, I.T. and Verbeek, P.W.},
  title = {Recursive Gaussian Derivative Filters},
  year = {1998},
  volume = {I},
  pages = {509--514},
  editor = {Jain, A.K. and Venkatesh, S. and Lovell, B.C.},
  publisher = {IEEE Computer Society Press, Los Alamitos},
  booktitle = {{ICPR'98}, Proc. 14th Int. Conference on Pattern Recognition}
}
@article{Ziegler2004,
  author = {Ziegler, A. and Idrobo, J.C. and Cinibulk, M.K. and Kisielowski, C. and Browning, N.D. and Ritchie, R.O.},
  title = {Interface structure and atomic bonding characteristic in silicon nitride ceramics},
  journal = {Science},
  year = {2004},
  volume = {306},
  pages = {1768-1770}
}
@inproceedings{Verbeek1992a,
  author = {Verbeek, P.W. and Vliet, L.J. van},
  title = {An estimator of edge length and surface area in digitized {2D} and {3D} images},
  year = {1992},
  volume = {3},
  pages = {1--5},
  publisher = {IEEE Computer Society Press},
  booktitle = {Proc. 11th IAPR Int. Conf. on Pattern Recognition}
}
@article{Gove1995,
  author = {Gove, A. and Grossberg, S. and Mingolla, E.},
  title = {Brightness Perception, Illusory Contours, and Corticogeniculate Feedback},
  journal = {Visual Neuroscience},
  year = {1995},
  volume = {12},
  number = {6},
  pages = {1027--1052}
}
@article{Whitehouse1974,
  author = {Whitehouse, W.J.},
  title = {The Quantitative Morphology of Anisotropy Trabecular Bone},
  journal = {Journal of Microscopy},
  year = {1974},
  volume = {101},
  pages = {153--168}
}
@phdthesis{Vliet1993,
  author = {Vliet, L.J. van},
  title = {Grey-Scale Measurements in Multi-Dimensional Digitized Images},
  year = {1993},
  month = {October},
  address = {Delft, The Netherlands},
  school = {Delft University of Technology}
}
@article{Scalettar1996,
  author = {Scalettar, B.A. and Swedlow, J.R. and Sedat, J.W. and Agard, D.A.},
  title = {Dispersion, aberration and deconvolution in multi-wavelength fluorescence images},
  journal = {Journal of Microscopy},
  year = {1996},
  volume = {182},
  pages = {50--60}
}
@article{Vliet1990,
  author = {Vliet, L.J. van and Young, I.T. and Mayall, B.H.},
  title = {The {Athena} Semi-Automated Katyotyping System},
  journal = {Cytometry},
  year = {1990},
  volume = {11},
  number = {1},
  pages = {51--58}
}
@misc{Vliet1995,
  author = {Vliet, L.J. van. and Verbeek, P.W.},
  title = {Segmentation of Overlapping Objects},
  year = {1995},
  month = {October},
  howpublished = {in L.J. van Vliet and I.T. Young (eds), Abstracts of the ASCI Imaging Workshop, Venray, The Netherlands, 5-6}
}
@techreport{Vliet1996,
  author = {Vliet, L.J. van and Verbeek, P.W.},
  title = {Texture Analysis and Segmentation of Subsurface Images},
  year = {1996},
  number = {WC/40930},
  institution = {Shell}
}
@inproceedings{Vliet1994,
  author = {Vliet, L.J. van and Verbeek, P.W.},
  title = {Better geometric measurements based on photometric information},
  year = {1994},
  pages = {1357--1360},
  booktitle = {Proc. IEEE Instrumentation and Measurement Technology Conf. IMTC94}
}
@inproceedings{Vliet1999,
  author = {Vliet, L.J. van and Luengo Hendriks, C.L.},
  title = {Improving spatial resolution in exchange of temporal resolution in aliased image sequence},
  year = {1999},
  pages = {493--499},
  month = {June 7-11},
  editor = {Ersboll, B.K. and Johansen,P. },
  publisher = {Pattern Recognition Society of Denmark},
  address = {Lyngby},
  booktitle = {Proc. 11th Scandinavian Conference on Image Analysis}
}
@article{Haque1985,
  author = {Haque, M.A.},
  title = {A Two-Dimensional Fast Cosine Transform},
  journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
  year = {1985},
  volume = {33},
  number = {6},
  pages = {1532--1538},
  month = {December},
  annote = {key_fft}
}
@inproceedings{Ridder2000,
  author = {Ridder, D. de and Kittler, J. and Duin, R.P.W.},
  title = {Probabilistic {PCA} and {ICA} subspace mixture models for image segmentation},
  year = {2000},
  pages = {112-121},
  month = {Bristol, UK},
  editor = {Mirmehdi, M. and Thomas, B.},
  booktitle = {Proceedings British Machine Vision Conference 2000},
  organization = {BMVA}
}
@techreport{Nordberg1992,
  author = {Nordberg, K. and Knutsson, H. and Granlund, G.H.},
  title = {Signal Representation using Operators},
  year = {1992},
  institution = {{Link\"oping University}},
  note = {LiTH-ISY-I-1342}
}
@techreport{Nordberg1993,
  author = {Nordberg, K. and Knutsson, H. and Granlund, G.H.},
  title = {On the Invariance of the Orientation and the Tensor Field Representation},
  year = {1993},
  address = {{Link\"oping}, Sweden},
  institution = {{Link\"oping} University},
  note = {LiTH-ISY-R-1530 }
}
@inproceedings{Aguado1995,
  author = {Aguado, A.S. and Montiel, M.E. and Nixon, M.S.},
  title = {Ellipse Detection via Gradient Direction in the {Hough} Transform},
  year = {1995},
  pages = {375--378},
  month = {4--6 July},
  booktitle = {Fifth International Conference on Image Processing and its Applications}
}
@techreport{Nordberg1995,
  author = {Nordberg, K. and Knutsson, H. and Granlund, G.H.},
  title = {Local Curvature from Gradients of the Orientation Tensor Field},
  year = {1995},
  address = {{Link\"oping}, Sweden},
  institution = {{Link\"oping University}},
  note = {LiTH-ISY-R-1783}
}
@article{HautaKasari1999,
  author = {Hauta-Kasari, M. and Parkkinen J. and Jaaskelainen, T. and Lenz, R.},
  title = {Multi-Spectral Texture Segmentation Based on the Spectral Co-occurrence Matrix},
  journal = {Pattern Analysis {\&} Applications},
  year = {1999},
  volume = {2},
  pages = {275--284}
}
@book{Sethian1996,
  author = {Sethian, J. A.},
  title = {Level Set Methods and Fast Marching Methods: Evolving Interfaces in Computational Geometry, Fluid Mechanics, Computer Vision, and Materials Science},
  year = {1996},
  publisher = {Cambridge University Press},
  address = {Cambridge}
}
@techreport{Nordberg1994,
  author = {Nordberg, K. and Granlund, G.H. and Knutsson, H.},
  title = {Representation and Learning of Invariance},
  year = {1994},
  number = {{LiTH-ISY-I-1552}},
  institution = {{Link\"oping University}}
}
@article{Eberly1991,
  author = {Eberly, D. and Lancaster, J.},
  title = {On Gray Scale Image Measurements. {I}. Arc Length and Area},
  journal = {CVGIP: Graphical Models and Image Processing},
  year = {1991},
  volume = {53},
  number = {6},
  pages = {538--549},
  month = {November}
}
@book{Hearn1997,
  author = {Hearn,D. and Baker, M.P. },
  title = {Computer Graphics},
  year = {1997},
  publisher = {Prentice Hall},
  address = {Englewood Cliffs, New Jersey},
  edition = {2}
}
@inproceedings{Knutsson1985,
  author = {Knutsson, H.},
  title = {Producing a Continuous and Distance Preserving 5-D Vector Representation of 3-D Orientation},
  year = {1985},
  pages = {175--182},
  month = {November 18-20},
  publisher = {Miami Beach, Florida},
  booktitle = {IEEE Computer Society Workshop on Computer Architecture for Pattern Analysis and Image Database Management}
}
@article{Daulton2006,
  author = {Daulton, T.L. and Little, B.J.},
  title = {Determination of chromium valence over the range {Cr(0)-Cr(VI)} by electron energy loss spectroscopy},
  journal = {Ultramicroscopy},
  year = {2006},
  volume = {106},
  pages = {561-573}
}
@inproceedings{Knutsson1980,
  author = {Knutsson, H. and Granlund, G. H.},
  title = {Fourier Domain Design of Line and Edge Detectors},
  year = {1980},
  month = {December},
  address = {Miami, Florida},
  booktitle = {Proceedings of the 5th International Conference on Pattern Recognition}
}
@inproceedings{Knutsson1989,
  author = {Knutsson, H.},
  title = {Representing Local Structure Using Tensors},
  year = {1989},
  pages = {244--251},
  month = {June 19-22},
  address = {Oulu, Finland},
  booktitle = {The 6th Scandinavian Conference in Image Analysis}
}
@article{Knutsson1983,
  author = {Knutsson, H. and Wilson, R. and Granlund, G.H.},
  title = {Anisotropic Non-Stationary Image Estimation and its Applications --- {P}art {I}: {R}estoration of Noisy Images},
  journal = {IEEE Transactions on Communications},
  year = {1983},
  volume = {31},
  number = {3},
  pages = {388--397},
  month = {March},
  note = {Report LiTH--ISY--I--0462, {Link\"oping} University, Sweden, 1981}
}
@phdthesis{Knutsson1982,
  author = {Knutsson, H.},
  title = {Filtering and Reconstruction in Image Processing},
  year = {1982},
  address = {{Link\"oping, Sweden}},
  school = {{Link\"oping University}}
}
@article{Kothleitner2003,
  author = {Kothleitner, G. and Hofer, F.},
  title = {{EELS} performance measurements on a new high energy resolution imaging filter},
  journal = {Micron},
  year = {2003},
  volume = {34},
  pages = {211-218}
}
@article{Bowie1977,
  author = {Bowie, J.E. and Young, I.T.},
  title = {An Analysis Technique for Biological Shape -- {II}},
  journal = {Acta Cytologica},
  year = {1977},
  volume = {21},
  number = {5},
  pages = {455--464}
}
@article{Tiemeijer1999,
  author = {Tiemeijer, P.C.},
  title = {Measurement of Coulomb interactions in an electron beam monochromator},
  journal = {Ultramicroscopy},
  year = {1999},
  volume = {78},
  pages = {53-62}
}
@article{Osher1990,
  author = {Osher, S. and Rudin, L.I.},
  title = {Feature-Oriented Image Enhancement Using Shock Filters},
  journal = {SIAM J. Numer. Anal.},
  year = {1990},
  volume = {27},
  number = {4},
  pages = {919--940},
  month = {August}
}
@article{Hsu1990,
  author = {Hsu, C.-C. and Huang, J.S.},
  title = {Partitioned {H}ough Transform for Ellipsoid Detection},
  journal = {Pattern Recognition},
  year = {1990},
  volume = {23},
  pages = {275--282},
  annote = {key_radon}
}
@article{Fan2000,
  author = {Fan, G.Y. and Ellisman, M.H.},
  title = {Digital imaging in transmission electron microscopy},
  journal = {Journal of Microscopy},
  year = {2000},
  volume = {200},
  number = {1},
  pages = {1-13}
}
@inproceedings{Ramasse2004,
  author = {Ramasse, Q.M. and Bleloch, A.L.},
  title = {Diagnosis of aberrations from crystalline samples in aberration corrected {STEM}},
  year = {2004},
  pages = {1-2},
  booktitle = {13th European Microscopy Congress EMC 2004 (August 22-27, Antwerpen, Belgium)},
  organization = {European Microscopy Society}
}
@inproceedings{Weijer2001b,
  author = {J. van de Weijer and R. van den Boomgaard},
  title = {Local Mode Filtering},
  year = {Dec. 2001},
  address = {Kauai, Hawaii, USA},
  booktitle = {CVPR'01}
}
@article{Krivanek1999,
  author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.},
  title = {Towards sub- electron beams},
  journal = {Ultramicroscopy},
  year = {1999},
  volume = {78},
  pages = {1-11}
}
@article{Stockwell1996,
  author = {Stockwell, R.G. and Mansinha, L. and Lowe, R.P.},
  title = {Localization of the Complex Spectrum: the {S} Transform},
  journal = {IEEE Transactions on Signal Processing},
  year = {1996},
  volume = {44},
  number = {4},
  pages = {998--1001},
  month = {April}
}
@article{Ramasse2005,
  author = {Ramasse, Q.M. and Bleloch, A.L.},
  title = {Diagnosis of aberrations from crystalline samples in scanning transmission electron microscopy},
  journal = {Ultramicroscopy},
  year = {2005}
}
@inproceedings{Ramasse2003,
  author = {Ramasse, Q.M. and Bleloch, A.L.},
  title = {Wavelet image analysis in aberration-corrected scanning transmission electrion microscopy},
  year = {2003},
  pages = {343-345},
  booktitle = {Elextron Microscopy and Analysis Group Conference EMAG2003 (Oxford, UK)},
  organization = {IOP Publishing Ltd}
}
@article{Dekker2001,
  author = {Dekker, A.J. den and Aert, S. van and Dyck, D. van and Bos, A. van den and Geuens, P.},
  title = {Does a monochromator improve the precision in quantitative {HRTEM}?},
  journal = {Ultramicroscopy},
  year = {2001},
  volume = {89},
  pages = {275-290}
}
@article{Ballard1981,
  author = {Ballard, D.H.},
  title = {Generalizing the {Hough} Transform to Detect Arbitrary Shapes},
  journal = {Pattern Recognition},
  year = {1981},
  volume = {13},
  number = {2},
  pages = {111--122},
  annote = {key_radon}
}
@book{Bass1995,
  title = {Handbook of Optics II},
  year = {1995},
  editor = {Bass, M},
  publisher = {McGraw-Hill},
  address = {New York}
}
@inproceedings{Worring1992,
  author = {Worring, M. and Smeulders, A.W.M.},
  title = {The accuracy and precision of curvature estimation methods},
  year = {1992},
  pages = {139--142},
  publisher = {IEEE Computer Society Press},
  address = {The Hague, The Netherlands},
  booktitle = {Proceedings of the 11th IAPR International Conference on Pattern Recognition}
}
@article{Uhlemann1998,
  author = {Uhlemann, S. and Haider, M.},
  title = {Residual wave aberrations in the first spherical aberration corrected transmission electron microscope},
  journal = {Ultramicroscopy},
  year = {1998},
  volume = {72},
  pages = {109-119}
}
@book{Sigel1988,
  author = {Siegel, S. and Castellan, N.J. Jr.},
  title = {Nonparametric statistics for the behavioral sciences},
  year = {1988},
  publisher = {Mc Graw-Hill},
  address = {New York}
}
@phdthesis{Eisele2002,
  author = {Eisele, H.},
  title = {Automatic Defect Detection and Evaluation in {X}-ray {CT} Images},
  year = {2002},
  month = {December},
  address = {Heidelberg, Germany},
  school = {Ruprechts-Karls-{Universit\"at} University}
}
@article{Lanzavecchia1999,
  author = {Lanzavecchia, S. and Wade, R.H. and Ghiretti Magaldi, A. and Tognon, G. and Bellon, P.L.},
  title = {A Two-Exposure Technique for Ice-Embedded Samples Successfully Reconstructs the Chlorocruorin Pigment of Sabella spallanzanii at 2.1 nm Resolution},
  journal = {Journal of Structural Biology},
  year = {1999},
  volume = {127},
  pages = {53-63}
}
@article{Demirel2005,
  author = {Demirel, M. and Cherny, D.I.},
  title = {Clustering and diversity of fluctuations for proteins},
  journal = {Journal of Nanomedicine},
  year = {2005},
  volume = {1},
  pages = {41-46}
}
@article{Cohen1997,
  author = {Cohen, L.D. and Kimmel, R.},
  title = {Global minimum for active contour models: A minimal path approach},
  journal = {International Journal of Computer Vision},
  year = {1997},
  volume = {24},
  number = {1},
  pages = {57-58}
}
@inproceedings{Geusebroek2002,
  author = {Geusebroek, J.M. and Smeulders, A.W.M. and Weijer, J. van de},
  title = {Fast Anisotropic {G}auss Filtering},
  year = {2002},
  volume = {2350},
  pages = {99--112},
  editor = {Heyden, A.},
  publisher = {Springer-Verlag},
  series = {Lecture Notes in Computer Science},
  booktitle = {Proceedings of the ECCV 2002}
}
@article{Geusebroek2003,
  author = {Geusebroek, J.M. and Smeulders, A.W.M. and Weijer, J. van de},
  title = {Fast anisotropic gauss filtering},
  journal = {IEEE Transactions on Image Processing},
  year = {2003},
  volume = {12},
  number = {8},
  pages = {938-943}
}
@article{Cohen1992,
  author = {Cohen, F.S. and Fan, Z.},
  title = {Maximum Likelihood Unsupervised Textured Image Segmentation},
  journal = {CVGIP: Graphical Models and Image Processing},
  year = {1992},
  volume = {54},
  number = {3},
  pages = {239--251},
  month = {May}
}
@article{Geusebroek2000,
  author = {Geusebroek, J.M. and Cornelissen, F. and Smeulders, A.W.M. and Geerts, H.},
  title = {Robust autofocusing in microscopy},
  journal = {Cytometry},
  year = {2000},
  volume = {39},
  number = {1},
  pages = {1-9}
}
@article{Delon2004,
  author = {Delon, A. and Usson, Y. and Derouard, J. and Biben, T. and Souchier, C.},
  title = {Photobleaching, Mobility, and Compartmentalisation: Inferences in Fluorescence Correlation Spectroscopy},
  journal = {Journal of Fluorescence},
  volume = {14},
  number = {3},
  pages = {255-267}
}
@article{Aldroubi2001,
  author = {Aldroubi, A. and {Gr\"ochenig}, K.},
  title = {Nonuniform Sampling and Reconstruction in Shift-Invariant Spaces},
  journal = {SIAM Review},
  year = {2001},
  volume = {43},
  number = {4},
  pages = {585--620}
}
@article{Barash2002,
  author = {Barash, D.},
  title = {A Fundamental Relationship between Bilateral Filtering, Adaptive Smoothing, and the Nonlinear Diffusion Equation},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {2002},
  volume = {24},
  number = {6},
  pages = {844--847}
}
@inproceedings{Lorenz1997,
  author = {Lorenz, C. and Carlsen, I.-C. and Buzug, T.M. and Fassnacht, C. and Weese, J.},
  title = {A Multi-scale Line Filter with Automatic Scale Selection based on the {Hessian} Matrix for Medical Image Segmentation},
  year = {1997},
  volume = {1252},
  pages = {152--163},
  editor = {Haar Romeny, B.M. ter and Florack, L. and Koenderink, J.J. and Viergever, M.A.},
  publisher = {Springer},
  series = {Lecture Notes in Computer Science},
  address = {Utrecht, The Netherlands},
  booktitle = {Scale-Space Theory in Computer Vision, First International Conference}
}
@article{Leavers2000a,
  author = {Leavers, V.F.},
  title = {Use of the Two-Dimensional {Radon} Transform to Generate a Taxonomy of Shape for the Characterization of Abrasive Powder Particles},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {2000},
  volume = {22},
  number = {12},
  pages = {1411--1423},
  month = {December},
  annote = {key_radon}
}
@book{Singh1992,
  author = {Singh, A.},
  title = {Optic Flow Computation: A Unified Perspective},
  year = {1992},
  publisher = {IEEE Computer Society Press}
}
@article{Foerster1948,
  author = {{F\"orster}, T.},
  title = {{Zwischenmolekulare} {Energiewanderung} und {Fluoreszenz}},
  journal = {Annalen der Physik},
  year = {1948},
  volume = {2},
  number = {6},
  pages = {55--75}
}
@article{Bigun1997,
  author = {{Big\"un}, J.},
  title = {Pattern Recognition in Images by Symmetries and Coordinate Transformations},
  journal = {Computer Vision and Image Understanding},
  year = {1997},
  volume = {68},
  number = {3},
  pages = {290--307}
}
@inproceedings{Bigun1996,
  author = {{Big\"un}, J.},
  title = {Coordinate Transformations, Symmetries, and {GHT}},
  year = {1996},
  volume = {3},
  pages = {197--201},
  month = {16--19 September},
  booktitle = {Proceedings of the International Conference on Image Processing}
}
@inproceedings{Bigun1994,
  author = {{Big\"un}, J.},
  title = {Speed, frequency, and orientation tuned 3-D Gabor filterbanks and their design},
  pages = {C-184--187},
  publisher = {IEEE Computer Society},
  booktitle = {Proceedings of International Conference on Pattern Recognition, ICPR, Jerusalem}
}
@book{Golub1996,
  author = {G.H. Golub and C.F. van Loan},
  title = {Matrix Computations},
  year = {1996},
  publisher = {John Hopkins University Press},
  address = {Baltimore},
  edition = {3}
}
@article{Jeulin1989,
  author = {Jeulin, D.},
  title = {Morphological Modeling of Images by Sequential Random Functions},
  journal = {Signal Processing},
  year = {1989},
  volume = {16},
  pages = {403--431}
}
@article{Kass1988,
  author = {Kass, M. and Witkin, A. and Terzopoulos, D.},
  title = {Snakes: Active Contour Models},
  journal = {International Journal of Computer Vision},
  year = {1988},
  pages = {321--331}
}
@article{Bigun1991,
  author = {{Big\"un}, J. and Granlund, G.H. and Wiklund, J.},
  title = {Multidimensional Orientation Estimation with Applications to Texture Analysis and Optical Flow},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1991},
  volume = {13},
  number = {8},
  pages = {775--790}
}
@inproceedings{Luengo2000a,
  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
  title = {Morphological Scale-Space to Differentiate Microstructures of Food Products},
  year = {2000},
  pages = {289--293},
  month = {June 14-16},
  editor = {{L.J. van Vliet et al.}},
  booktitle = {Proceedings of the third annual conference of the Advanced School for Computing and Imaging (Heijen, the Netherlands)}
}
@article{Bahlmann2000,
  author = {Bahlmann, K. and Hell, S.W.},
  title = {Depolarization by high aperture focusing},
  journal = {Applied Physics Letters},
  year = {2000},
  volume = {77},
  number = {5},
  pages = {612-614}
}
@article{Dubuc2001,
  author = {Dubuc, B. and Zucker, S.W.},
  title = {Complexity, Confusion, and Perceptual Grouping. Part {I}: The Curve-like Representation},
  journal = {Journal of Mathematical Imaging and Vision},
  year = {2001},
  volume = {15},
  number = {1--2},
  pages = {55--82}
}
@book{Boor2001,
  author = {de Boor, Carl},
  title = {A Practical Guide to Splines},
  year = {2001},
  publisher = {Springer-Verlag},
  address = {New York}
}
@article{Vermolen2004,
  author = {Vermolen, B.J and Garini, Y. and Young, I.T.},
  title = {{3D} Restoration With Multiple Images Acquired by a Modified Conventional Microscope},
  journal = {Microscopy Research and Technique},
  year = {2004},
  volume = {64},
  pages = {113-125}
}
@article{Kass1987,
  author = {Kass, M. and Witkin, A.},
  title = {Analyzing Oriented Patterns},
  journal = {Computer Vision, Graphics and Image Processing},
  year = {1987},
  volume = {37},
  pages = {362--385}
}
@article{Ocuna1992,
  author = {Ocuna, C.O.},
  title = {Texture Modeling using {G}ibbs Distribution},
  journal = {CVGIP: Graphical Models and Image Processing},
  year = {1992},
  volume = {54},
  number = {3},
  pages = {210--222},
  month = {May}
}
@book{Jaehne1993,
  author = {{J\"ahne}, B.},
  title = {Spatio-Temporal Image Processing},
  year = {1993},
  number = {751},
  editor = {Goos, G. and Hartmanis, J.},
  publisher = {Springer-Verlag},
  series = {Lecture Notes in Computer Science},
  address = {Berlin}
}
@misc{Moller2000,
  author = {{M\oe ller}, J.},
  title = {Aspects of Spatial Statistics, Stochastic Geometry and {Markov} Chain Monte Carlo Methods},
  year = {2000},
  howpublished = {www},
  note = {D. Sc. thesis}
}
@article{Nagy2003,
  author = {Nagy, P. and Ardent-Jovin, D.J. and Jovin, T.M.},
  title = {Small interfering {RNA}s suppress the expression of endogenous and {GFP}-fused epidermal growth factor receptor (erbB1) and induce apoptosis in erbB1-overexpressing cells},
  journal = {Experimental Cell Research},
  year = {2003},
  volume = {285},
  number = {1},
  pages = {39-49}
}
@book{Greiner1993,
  author = {Greiner, W. and Neise, L. and {St\"ocker}, H.},
  title = {Theoretische Physik, Thermodynamik und statische Mechanik},
  year = {1993},
  publisher = {Verlag Harri Deutsch},
  address = {Frankfurt},
  edition = {2}
}
@inproceedings{Soille2000,
  author = {Soille, P.},
  title = {Morphological Operators with Discrete Line Segments},
  year = {2000},
  volume = {1953},
  pages = {78--98},
  editor = {Borgefors, G. and {Nystr\"om}, I. and Sanniti di Baja, G.},
  publisher = {Springer},
  series = {Lecture Notes on Computer Science},
  booktitle = {DGCI 2000, 9th Discrete Geometry for Computer Imagery}
}
@article{Ringach1996,
  author = {Ringach, D.L. and Shapley, R.},
  title = {Spatial and Temporal Properties of Illusory Contours and Amodal Boundary Completion},
  journal = {Vision Research},
  year = {1996},
  volume = {36},
  number = {19},
  pages = {3037--3050}
}
@article{Horn1981,
  author = {Horn, B.K.P. and Schunck, B.G.},
  title = {Determining Optical Flow},
  journal = {Artificial Intelligence},
  year = {1981},
  volume = {17},
  pages = {185--203}
}
@techreport{Horn1980,
  author = {Horn, B.K.P. and Schunck, B.G.},
  title = {Determining Optical Flow},
  year = {1980},
  month = {April},
  institution = {Massachusetts Institute of Technology},
  note = {A.I. Memo No. 572}
}
@misc{Verbeek1993a,
  author = {Verbeek, P.W.},
  title = {The {GST} as local mean squared friction},
  year = {1993},
  howpublished = {private communications}
}
@article{Boutin2000,
  author = {Boutin, M.},
  title = {Numerically Invariant Signature Curves},
  journal = {International Journal of Computer Vision},
  year = {2000},
  volume = {40},
  number = {3},
  pages = {235--248}
}
@article{Bettini1980,
  author = {Bettini, A. and Pozzan, M.R. and Valdevit, E. and Frontali, C.},
  title = {Microscopic persistence length of {DNA: Its} relation to average molecular dimensions},
  journal = {Biopolymers},
  year = {1980},
  volume = {19},
  number = {9},
  pages = {1689-1694}
}
@inproceedings{Ginkel2000,
  author = {Ginkel, M. van and Vliet, L.J. van and Verbeek, P.W.},
  title = {Robust Curvature Estimation by Finding Optimal Circular Segments in Orientation Space},
  year = {2000},
  pages = {299--306},
  month = {June 14-16},
  editor = {Vliet, L.J. van and Heijnsdijk, J.W.K. and Kielmann, T. and Knijnenburg, P.M.W.},
  booktitle = {ASCI2000, Proc. 6th Annual Conference of the Advanced School for Computing and Imaging (Lommel, Belgium)},
  organization = {ASCI, Delft}
}
@inproceedings{Ginkel2001,
  author = {Ginkel, M. van and Vliet, L.J. van and Verbeek, P.W. and Kraaijveld, M.A. and Reding, E.P.},
  title = {Robust Curve Detection using a Radon Transform in Orientation Space Applied to Fracture Detection in Borehole Images},
  year = {2001},
  pages = {84--91},
  month = {May 30--June 1},
  editor = {Lagendijk, R.L. and Heijnsdijk, J.W.J. and Pimentel, A.D. and Wilkinson, M.H.F.},
  booktitle = {ASCI2001, Proc. 7th Annual Conference of the Advanced School for Computing and Imaging (Heijen, the Netherlands)},
  organization = {ASCI, Delft}
}
@inproceedings{Ginkel2003,
  author = {Ginkel, M. van and Kraaijveld, M.A. and Vliet, L.J. van and Reding, E.P. and Verbeek, P.W. and Lammers, H.J.},
  title = {Robust Curve Detection Using a {Radon} Transform in Orientation Space},
  year = {2003},
  pages = {125--132},
  month = {June 29--July 2},
  editor = {{Big\"un}, J. and Gustavsson, T.},
  publisher = {Springer},
  series = {Lecture Notes in Computer Science 2749},
  booktitle = {Proceedings of the 13th Scandinavian Conference on Image Analysis}
}
@article{Jonker2002,
  author = {Jonker, P.P.},
  title = {Skeletons in {N} Dimensions using Shape Primitives},
  journal = {Pattern Recognition Letters},
  year = {2002},
  volume = {23},
  number = {6},
  pages = {677--686}
}
@phdthesis{Ginkel2002,
  author = {Ginkel, M. van},
  title = {Image Analysis using Orientation Space based on Steerable Filters},
  year = {2002},
  address = {Delft, The Netherlands},
  school = {Delft University of Technology},
  note = {digital version available:\\\ {\small\tt http://www.ph.tn.tudelft.nl/PHDTheses/MvGinkel/thesis\_vanginkel.html}}
}
@article{Chen1989a,
  author = {Chen, M.-H. and Yan, P.-F.},
  title = {A Multiscaling Approach Based on Morphological Filtering},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1989},
  volume = {11},
  number = {7},
  pages = {694--700}
}
@article{Zhou2001a,
  author = {Zhou, Z.H. and Liao, W. and Cheng, R.H. and Lawson, J.E. and McCarthy, D.B. and Reed, L.J. and Stoops, J.K.},
  title = {Direct Evidence for the Size and Conformational Variability of the Pyruvate Dehydrogenase Complex Revealed by Three-dimensional Electron Microscopy},
  journal = {Journal of Biological Chemistry},
  year = {2001},
  volume = {276},
  number = {24},
  pages = {21704-21713}
}
@article{Verwer1989,
  author = {Verwer, B.J.H. and Verbeek, P.W. and Dekker, S.T.},
  title = {An Efficient Uniform Cost Algorithm Applied to Distance Transforms},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1989},
  volume = {11},
  number = {4},
  pages = {425--429},
  month = {April}
}
@techreport{Ginkel2004,
  author = {Ginkel, M. van and Luengo Hendriks, C.L. and Vliet, L.J. van},
  title = {An short introduction to the Radon and Hough transforms and how they relate to each other},
  year = {2003},
  month = {December},
  institution = {Pattern Recognition Group, Delft University of Technology},
  note = {Technical Report PH-2003-03}
}
@inproceedings{Verwer1988,
  author = {Verwer, B.J.H.},
  title = {Improved metrics in image processing applied to the Hilditch skeleton},
  year = {1988},
  pages = {137--142},
  month = {November},
  booktitle = {Proceedings of the 9th IAPR international conference on pattern recognition (ICPR), (Rome, Italy)}
}
@article{Beaucage1997,
  author = {Beaucage, G. and Rane, S. and Sukumaran, S. and Satkowski, M.M. and Schechtman, L.A. and Doi, Y.},
  title = {Persistence Length of Isotactic Poly(hydroxy butyrate)},
  journal = {Macromolecules},
  year = {1997},
  volume = {30},
  pages = {4158-4162}
}
@article{Dyck2004,
  author = {Dyck, D. van and Aert, S. van and Dekker, A.J. den},
  title = {Physical Limits on Atomic Resolution},
  journal = {Microscopy and Microanalysis},
  year = {2004},
  volume = {10},
  pages = {153-157}
}
@article{Dyck2003,
  author = {Dyck, D. van and Aert, S. van and Dekker, A.J. den and Bos, A. van den},
  title = {Is atomic resolution transmission electron microscopy able to resolve and re ne amorphous structures?},
  journal = {Ultramicroscopy},
  year = {2003},
  volume = {98},
  pages = {27-42}
}
@article{Bastiaens1996,
  author = {Bastiaens, P.I.H. and Majoul, I.V. and Verveer, P.J. and {S\"oling}, H.-D. and Jovin, T.M.},
  title = {Imaging the intracellular trafficking and state of the {AB_5} quaternary structure of cholera toxin},
  journal = {The EMBO Journal},
  year = {1996},
  volume = {15},
  number = {16},
  pages = {4246-4253}
}
@article{Lanzavecchia2005,
  author = {Lanzavecchia, S. and Cantele, F. and Bellon, P.L. and Zampighi, L. and Kreman, M. and Wrigth, E. and Zampighi, G.A.},
  title = {Conical tomography of freeze-fracture replicas: a method for the study of integral membrane proteins inserted in phospholipid bilayers},
  journal = {Journal of Structural Biology},
  year = {2005},
  volume = {149},
  pages = {87-98}
}
@article{Chang1997,
  author = {Chang, S.-H. and Cheng, F.-H. and Hsu, W.-H.and Wu, G.-Z.},
  title = {Fast algorithm for point pattern matching: {I}nvariant to translations, rotations and scale changes},
  journal = {Pattern Recognition},
  year = {1997},
  volume = {30},
  number = {2},
  pages = {311-320}
}
@inproceedings{Froment1999,
  author = {Froment, J.},
  title = {A Compact and Multiscale Image Model Based on Level Sets},
  year = {1999},
  pages = {152--163},
  publisher = {Springer Verlag},
  series = {Lecture Notes in Computer Science},
  booktitle = {Scale-Space Theories in Computer Vision}
}
@article{Quintanilla1997,
  author = {Quintanilla, J. and Torquato, S.},
  title = {Clustering in a Continuum Percolation Model},
  journal = {Adv. Appl. Probab.},
  year = {1997},
  volume = {29},
  pages = {327--336}
}
@article{Quintanilla1999,
  author = {Quintanilla, J. and Torquato, S.},
  title = {Percolation for a model of statistically inhomogeneous random media},
  journal = {Journal of Chemical Physics},
  year = {1999},
  volume = {111},
  number = {13},
  month = {October}
}
@article{Lindeberg1994a,
  author = {Lindeberg, T.},
  title = {Scale-space Theory: A Basic Tool for Analyzing Structures at Different Scales},
  journal = {Journal of Applied Statistics},
  year = {1994},
  volume = {21},
  number = {2},
  pages = {224--270}
}
@inproceedings{Maragos1999,
  author = {Maragos, Petros and Meyer, Fernand},
  title = {Nonlinear PDEs and Numerical Algorithms for Modeling Levelings and Reconstruction Filters},
  year = {1999},
  volume = {1682},
  pages = {363--374},
  month = {September},
  editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
  publisher = {Springer-Verlag},
  series = {Lecture Notes on Computer Science},
  address = {Berlin Heidelberg},
  booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)}
}
@article{Cooley1965,
  author = {Cooley, J.W. and Tukey, J.W.},
  title = {An algorithm for the machine calculation of complex {Fourier} series},
  journal = {Math. Comp.},
  year = {1965},
  volume = {19},
  pages = {297--301},
  month = {April},
  annote = {key_fft}
}
@article{Bruin2004,
  author = {Bruin, P.W. de and Dercksen, V.J. and Post, F.H. and Vosselpoel, A.M. and Streekstra, G.J. and Vos, F.M.},
  title = {Interactive {3D} segmentation using connected orthogonal contours},
  journal = {Computers in Biology and Medicine},
  year = {2004},
  volume = {34},
  pages = {1-18}
}
@incollection{Bastiaens1998,
  author = {Bastiaens, I.H. and Jovin, T.M.},
  title = {Fluorescence Resonance Energy Transfer Microscopy},
  year = {1998},
  pages = {99-117},
  publisher = {Academic Press},
  address = {New York},
  edition = {second},
  booktitle = {Cell Biology: A Laboratory Handbook}
}
@article{Maragos1995,
  author = {Maragos, Petros},
  title = {Slope Transforms: Theory and Application to Nonlinear Signal Processing},
  journal = {IEEE Transactions on Signal Processing},
  year = {1995},
  volume = {43},
  number = {4},
  pages = {864-877}
}
@inproceedings{Bakker1999,
  author = {Bakker, P. and Vliet, L.J. van and Verbeek, P.W.},
  title = {Edge preserving orientation adaptive filtering},
  year = {1999},
  volume = {2},
  pages = {535--540},
  publisher = {IEEE Computer Society Press},
  address = {Los Alamitos, CA, USA},
  booktitle = {Conference on Computer Vision and Pattern Recognition}
}
@article{Mokhtarian2001,
  author = {Mokhtarian, F. and Khalili, N. and Yuen, P.},
  title = {Curvature Computation on Free-Form 3-D Meshes at Multiple Scales},
  journal = {Computer Vision and Image Under Standing},
  year = {2001},
  volume = {83},
  pages = {118--139}
}
@phdthesis{Scharr2000,
  author = {Scharr, H.},
  title = {Optimale Operatoren in der Digitalen Bildverarbeitung},
  year = {2000},
  month = {May},
  address = {Heidelberg, Germany},
  school = {Ruprechts-Karls-{Universit\"at} University}
}
@article{Hell2003,
  author = {Hell, S.W.},
  title = {Towards fluorescence nanoscopy},
  journal = {Nature Biotechnology},
  year = {2003},
  volume = {21},
  number = {11},
  pages = {1347-1355}
}
@techreport{Goutsias1996,
  author = {Goutsias, J.},
  title = {{M}arkov Random Fields: Interacting Particle Systems for Statistical Image Modeling and Analysis},
  year = {1996},
  institution = {Department of Electrical and Computer Engineering, The Johns Hopkins University, USA}
}
@article{Hell2004,
  author = {Hell, S.W. and Dyba, M. and Jackobs, S.},
  title = {Concepts for nanoscale resolution in fluorescence microscopy},
  journal = {Current Opinion in Neurobiology},
  year = {2004},
  volume = {14},
  number = {5},
  pages = {599-609}
}
@article{Mouche1999,
  author = {Mouche, F. and Boisset, N. and Lamy, J. and Zal, F. and Lamy, J.N.},
  title = {Structural Comparison of Cephalopod Hemocyanins: Phylogenetic Significance},
  journal = {Journal of Structural Biology},
  year = {1999},
  volume = {127},
  pages = {199-212}
}
@book{Lipson2001,
  author = {Lipson, S.G. and Lipson, H. and Tannhauser, D.S.},
  title = {Optical Physics},
  year = {2001},
  publisher = {Cambridge University Press},
  address = {Cambridge},
  edition = {3rd edition}
}
@article{Winograd1978,
  author = {Winograd, S.},
  title = {On Computing the Discrete {Fourier} Transform},
  journal = {Mathematics of Computation},
  year = {1978},
  volume = {32},
  number = {141},
  pages = {175--199},
  month = {January},
  annote = {key_fft}
}
@article{Narasimha1978,
  author = {Narasimha, M.J. and Peterson, A.M.},
  title = {On the computation of the discrete cosine transform},
  journal = {IEEE Transactions on Communications},
  year = {1978},
  volume = {26},
  pages = {934--936},
  month = {June},
  annote = {key_fft}
}
@article{Rajagopal1959,
  author = {Rajagopal, E.S.},
  title = {Statistical Theory of Particle Size Distributions in Emulsions and Suspensions},
  journal = {Kolloid-Zeitschrift},
  year = {1959},
  volume = {162},
  number = {2},
  pages = {85--92},
  month = {February}
}
@article{Lindek1996,
  author = {Lindek, S. and Stelzer, E.H.K.},
  title = {Optical transfer functions for confocal theta fluorescence microscopy},
  journal = {Journal of the Optical Society of America A},
  year = {1996},
  volume = {13},
  number = {3},
  pages = {479--482}
}
@article{Winograd1976,
  author = {Winograd, S.},
  title = {On Computing the Discrete {Fourier} Transform},
  journal = {Proc. Nat. Acad. Sci. USA},
  year = {1976},
  volume = {73},
  number = {4},
  pages = {1005--1006},
  month = {April},
  annote = {key_fft}
}
@article{Genovesio2006,
  author = {Genovesio, A. and Liedl, T. and Emiliani, V. and Parak, W.J. and Coppey-Moisan, M. and Olivo-Marin, J.-C.},
  title = {Tracking in {3-D+t} Microscopy: Method and Application to the Tracking of Endocytosed Quantum Dots},
  journal = {IEEE Transactions on Image Processing},
  year = {2006},
  volume = {15},
  number = {5},
  pages = {1062-1070}
}
@article{Vliet1988,
  author = {Vliet, L.J. van and Verwer, B.J.H.},
  title = { A contour processing method for fast binary neighbourhood operations},
  journal = {Pattern Recognition Letters},
  year = {1988},
  volume = {7},
  number = {1},
  pages = {27--36}
}
@article{Vliet1989,
  author = {Vliet, L.J. van and Young, I.T. and Beckers, A.L.D.},
  title = {A nonlinear Laplace operator as edge detector in noisy images},
  journal = {Computer Vision, Graphics and Image Processing},
  year = {1989},
  volume = {45},
  number = {2},
  pages = {167--195}
}
@inproceedings{Rieger2002b,
  author = {Rieger, B. and Timmermans, F.J. and Vliet, L.J. van and Verbeek, P.W. },
  title = {Curvature estimation of surfaces in 3D grey-value images},
  year = {2002},
  volume = {1},
  month = {August 11-15},
  editor = {R. Kasturi, D. Laurendeau, C. Suen},
  booktitle = {ICPR'02, Proc. 16th Int. Conf. on Pattern Recognition},
  organization = {IEEE Computer Society}
}
@inproceedings{Hall1996,
  author = {Hall, J. and Ponzi, M. and Gonfalini, M. and Maletti, G.},
  title = {Automatic Extraction and Characterization of Geological Features and Textures from Borehole Images and Core Photographs},
  year = {1996},
  month = {June 16-19},
  booktitle = {SPWLA 37th Annual Logging Symposium}
}
@article{Herk1992,
  author = {Herk, M. van},
  title = {A Fast Algorithm for Local Minimum and Maximum Filters on Rectangular and Octagonal Kernels},
  journal = {Pattern Recognition Letters},
  year = {1992},
  volume = {13},
  pages = {517--521},
  month = {July}
}
@inproceedings{Rieger2002a,
  author = {Rieger, B. and Timmermans, F.J. and Vliet, L.J. van},
  title = {Estimation of curvature on surfaces in 3D grey-value images},
  year = {2002},
  pages = {170--177},
  month = {June},
  booktitle = {Proc. ASCI 2002, 8th Annual Conf. of the Advanced School for Computing and Imaging}
}
@article{Sethian1985,
  author = {Sethian, J.A.},
  title = {Curvature and the Evolution of Fronts},
  journal = {Communications in Mathematical Physics},
  year = {1985},
  volume = {101},
  pages = {487--499}
}
@book{Oneill1997,
  author = {B. O'Neill},
  title = {Elementary Differential Geometry},
  year = {1997},
  publisher = {Academic Press},
  address = {New York},
  annote = {ph2540}
}
@book{Gray1994,
  author = {Gray, A.},
  title = {Modern Differential Geometry of Curves and Surfaces},
  year = {1994},
  publisher = {CRC Press},
  address = {Florida}
}
@techreport{Knutsson1995,
  author = {Knutsson, H. and Andersson, M.T.},
  title = {Robust N-Dimensional Orientation Estimation using Quadrature Filters and Tensor Whitening},
  year = {1995},
  institution = {{Link\"oping} University, Sweden},
  note = {LiTH-ISY-R-1798}
}
@book{Fisher1993,
  author = {Fisher, N.I.},
  title = {Statistical Analysis of Circular Data},
  year = {1993},
  publisher = {Cambridge University Press}
}
@inproceedings{Knutsson1993,
  author = {Knutsson, H. and Westin, C.-F.},
  title = {Normalized Convolution - A Technique for Filtering Incomplete and Uncertain Data},
  year = {1993},
  volume = {2},
  pages = {997--1006},
  editor = {{H\o gda}, K. A. and Braathen, B. and Heia, K.},
  publisher = {Norwegian Society for Image Processing and Pattern Recognition},
  address = {{Troms\o} Norway},
  booktitle = {SCIA'93, Proceedings of the 8th Scandinavian Conference on Image Analysis}
}
@article{Eggers1998,
  author = {Eggers, H.},
  title = {Two fast Euclidean distance transformations in Z2 based on sufficient propagation},
  journal = {Comput. Vision Image Understanding},
  year = {1998},
  volume = {69},
  number = {1},
  pages = {106-116}
}
@inproceedings{Knutsson1991,
  author = {Knutsson, H. and Haglund, L. and {B\aa rman}, H.},
  title = {A Tensor Based Approach to Structure Analysis and Enhancement in 2{D}, 3{D} and 4{D}},
  year = {1991},
  month = {September},
  publisher = {IEEE Signal Processing Society},
  address = {Lake Placid, New York, USA},
  booktitle = {Workshop Program, Seventh Workshop on Multidimensional Signal Processing}
}
@article{Coster2001,
  author = {Coster, M. and Chermant, J.-L.},
  title = {Image Analysis and Mathematical Morphology for Civil Engineering Materials},
  journal = {Cement {\&} Concrete Composites},
  year = {2001},
  volume = {23},
  pages = {133--151}
}
@misc{Krivanek2002,
  author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.},
  title = {Autoadjusting charged-particle probe-forming apparatus},
  year = {2002},
  howpublished = {EP1197986}
}
@inproceedings{Granlund2000,
  author = {Granlund, G.H.},
  title = {An Associative Perception-Action Structure Using a Localized Space Variant Information Representation},
  year = {2000},
  month = {September 10--11},
  address = {Kiel, Germany},
  booktitle = {Proceedings of Algebraic Frames for the Perception-Action Cycle (AFPAC)}
}
@book{Papoulis2002,
  author = {Papoulis, A. and Pillai, S.U.},
  title = {Probability, Random Variables and Stochastic Processes},
  year = {2002, 1965},
  publisher = {McGraw-Hill},
  edition = {fourth}
}
@article{Brown1829,
  author = {Brown, R.},
  title = {Additional Remarks on Active Molecules},
  journal = {The Philosophical Magazine and Annals of Philosophy},
  year = {1829},
  volume = {6},
  number = {34},
  pages = {161-166}
}
@article{Unser1992,
  author = {Unser, Michael and Aldroubi, Akram and Eden, Murray},
  title = {Polynomial Spline Signal Approximations: Filter Design and Asymptotic Equivalence with Shannon's Sampling Theorem},
  journal = {IEEE Transactions on Information Theory},
  year = {1992},
  volume = {38},
  number = {1},
  pages = {95--103},
  month = {January}
}
@article{Worring1993,
  author = {Worring, M. and Smeulders, A.W.M.},
  title = {Digital curvature estimation},
  journal = {CVGIP: Image Understanding},
  year = {1993},
  volume = {58},
  number = {3},
  pages = {336--382}
}
@article{Medalia2002,
  author = {Medalia, O. and Weber, I. and Frangakis, A.S. and Nicastro, D. and Gerisch, G. and Baumeister, W.},
  title = {Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelectron Tomography},
  journal = {Ultramicroscopy},
  year = {2002},
  volume = {298},
  pages = {1209-1213}
}
@article{Wang1990,
  author = {Wang, Y.Y. and Feng, G. and Ritter, A.L.},
  title = {Electron-energy-loss and optical-transmittance investiationf of $Bi_2SR_2CaCu_2O_8$},
  journal = {Physical Review B},
  year = {1990},
  volume = {42},
  number = {1},
  pages = {420-425}
}
@misc{LeachXXXX,
  author = {Leach, S.},
  title = {Singular Value Decomposition -- A Primer},
  howpublished = {Web download-able. Department of Computer Science, Brown University, Providence, U.S.A.}
}
@article{Majumdar2000,
  author = {Majumdar, S. and Jayas, D.S.},
  title = {Classification of Cereal Grains Using Machine Vision: {III}. Texture Models},
  journal = {Transactions of the American Society of Agricultural Engineers},
  year = {2000},
  volume = {43},
  number = {6},
  pages = {1681--1687}
}
@techreport{Shewchuk1996,
  author = {Shewchuk, J.R.},
  title = {Adaptive Precision Floating-Point Arithmetic and Fast Robust Geometric Predicates},
  year = {1996},
  institution = {School of Computer Science, Carnegie Mellon University, USA}
}
@mastersthesis{Bezuijen2003,
  author = {Bezuijen, M.},
  title = {Improved sub-pixel shift estimation in 2D gray-value images},
  year = {2003},
  month = {September},
  address = {Delft, The Netherlands},
  school = {Delft University of Technology}
}
@article{Marr1980,
  author = {Marr, D. and Hildreth, E.},
  title = {Theory of edge detection},
  journal = {Proceedings of the Royal Society of London B},
  year = {1980},
  volume = {207},
  pages = {187--217}
}
@book{Marr1982,
  author = {Marr, D.},
  title = {Vision},
  year = {1982},
  publisher = {Freeman},
  address = {San Francisco, USA}
}
@article{Gerig1992,
  author = {Gerig, G. and {K\"ubler}, O. and Kikinis, R. and Jolesz, F.A.},
  title = {Nonlinear anisotropic filtering of {MRI} data},
  journal = {IEEE Transactions on Medical Imaging},
  year = {1992},
  volume = {11},
  number = {2},
  pages = {221--232},
  month = {June}
}
@article{Runnels1995,
  author = {Runnels, L.W. and Scarlata, S.F.},
  title = {Theory and application of fluorescence homotransfer to melittin oligomerization},
  journal = {Biophysical Journal},
  year = {1995},
  volume = {69},
  number = {4},
  pages = {1569-1583}
}
@article{Scharcanski1999,
  author = {Scharcanski, J. and Dodson, C.T.J.},
  title = {Local Spatial Anisotropy and Its Variability},
  journal = {Journal of Pulp and Paper Science},
  year = {1999},
  volume = {25},
  number = {11},
  pages = {393--397},
  month = {November}
}
@article{Pedersen2000,
  author = {Pedersen, K.S. and Nielsen, M.},
  title = {The {Hausdorff} Dimension and Scale-Space Normalization of Natural Images},
  journal = {Journal of Visual Communication and Image Representation},
  year = {2000},
  volume = {11},
  pages = {266--277}
}
@phdthesis{Fens2000,
  author = {Fens, T.W.},
  title = {Petrophysical Properties from Small Rock Samples using Image Analysis Techniques},
  year = {2000},
  school = {Delft University of Technology, Delft, The Netherlands}
}
@article{Keefe1992,
  author = {O'Keefe, M.A.},
  title = {'Resolution' in high-resolution electron microscopy},
  journal = {Ultramicroscopy},
  year = {1992},
  volume = {47},
  pages = {282-297}
}
@book{Hadwiger1957,
  author = {Hadwiger, H.},
  title = {{V}orlesungen {\"uber} {I}nhalt, {Oberfl\"ache} und {I}soperimetrie},
  year = {1957},
  publisher = {Springer-Verlag},
  address = {Berlin}
}
@book{Aguilera1999,
  author = {Aguilera, J.M. and Stanley, D.W.},
  title = {Microstructural Principles of Food Processing and Engineering},
  year = {1999},
  publisher = {Aspen Publishers, Inc.},
  edition = {second}
}
@article{Gramkov2001,
  author = {Gramkov, C.},
  title = {On Averaging Rotations},
  journal = {Journal of Mathematical Imaging and Vision},
  year = {2001},
  volume = {15},
  pages = {7--16}
}
@book{Bracewell2000,
  author = {Bracewell, R.N.},
  title = {The {F}ourier Transform and its Applications},
  year = {2000,1965},
  publisher = {McGraw-Hill},
  edition = {third},
  annote = {key_fft}
}
@article{Kimme1975,
  author = {Kimme, C. and Ballard, D. and Sklansky, J.},
  title = {Finding Circles by an Array of Accumulators},
  journal = {Communications of the ACM},
  year = {1975},
  volume = {18},
  number = {2},
  pages = {120--122},
  month = {February}
}
@article{Klar2001,
  author = {Klar, T. A. and Dyba, M. and Hell, S.W.},
  title = {Stimulated emission depletion microscopy with an offset depleting beam},
  journal = {Applied Physics Letters},
  year = {2001},
  volume = {78},
  number = {4},
  pages = {393-395}
}
@book{Madisetti1997,
  title = {The Digital Signal Processing Handbook},
  year = {1997},
  editor = {Madisetti, V.K. and Williams, D.B.},
  publisher = {IEEE Press/CRC Press}
}
@article{Granlund1978,
  author = {Granlund, G.H.},
  title = {In Search of a General Picture Processing Operator},
  journal = {Computer Graphics and Image Processing},
  year = {1978},
  volume = {8},
  pages = {155--173}
}
@book{Serra1982,
  author = {Serra, J.},
  title = {Image Analysis and Mathematical Morphology},
  year = {1982},
  publisher = {Academic Press},
  address = {London}
}
@book{Runge1924,
  author = {Runge, C. and Konitz, H.},
  title = {Vorlesungen {\"uber} Numerisches Rechnen},
  year = {1924},
  publisher = {Springer Verlag}
}
@article{Jeulin1992,
  author = {Jeulin, D. and Kurdy, M.B.},
  title = {Directional Mathematical Morphology for Oriented Image Restoration and Segmentation},
  journal = {Acta Stereology},
  year = {1992},
  volume = {11},
  number = {suppl. I},
  pages = {545--550}
}
@article{Jeulin1993,
  author = {Jeulin, D.},
  title = {Random Models for Morphological Analysis of Powders},
  journal = {Journal of Microscopy},
  year = {1993},
  volume = {172, Pt 1},
  pages = {13--21},
  month = {October}
}
@article{Westerweel1997,
  author = {Westerweel, J.},
  title = {Fundamentals of digital particle image velocimetry},
  journal = {Measurement Science and Technology},
  year = {1997},
  volume = {8},
  pages = {1379-1392}
}
@article{Vossepoel1979,
  author = {Vossepoel, A.M. and Smeulders, A.W.M and Broek, K. van den},
  title = {Dioda: Delineation and feature extraction of microscopical objects},
  journal = {Computer Programs in Biomedicine},
  year = {1979},
  volume = {10},
  pages = {231-244}
}
@inproceedings{Meyer1999a,
  author = {Meyer, Fernand and Maragos, Petros},
  title = {Morphological Scale-Space Representation with Levelings},
  year = {1999},
  volume = {1682},
  pages = {187--198},
  month = {September},
  editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
  publisher = {Springer-Verlag},
  series = {Lecture Notes on Computer Science},
  address = {Berlin Heidelberg},
  booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)}
}
@article{Gerlich2001,
  author = {Gerlich, D. and Beaudouin, J. and Gebhard, M. and Ellenberg, J. and Eils, R.},
  title = {Four-dimensional imaging and quantitative reconstruction to analyse complex spatiotemporal processes in living cells},
  journal = {Nature Cell Biology},
  year = {2001},
  volume = {9},
  pages = {852-855}
}
@article{Sklansky1978,
  author = {Sklansky, J.},
  title = {On the {H}ough Technique for Curve Detection},
  journal = {IEEE Transactions on Computers},
  year = {1978},
  volume = {27},
  number = {10},
  pages = {923--926},
  month = {October},
  annote = {key_radon}
}
@article{Vliet1994a,
  author = {Vliet, L.J. van and Verbeek, P.W.},
  title = {Edge localization by MoG filters: Multiple-of-Gaussians},
  journal = {Pattern Recognition Letters},
  year = {1994},
  volume = {15},
  number = {5},
  pages = {485--496}
}
@book{doCarmo,
  author = {do Carmo, M.P.},
  title = {Differential Geometry of Curves and Surfaces},
  year = {1976},
  publisher = {Prentice Hall},
  address = {New Jersey}
}
@book{Dullien1979,
  author = {Dullien, F.A.L.},
  title = {Porous Media - Fluid Transport and Pore Structure},
  year = {1979, 1992},
  publisher = {Academic Press},
  edition = {second}
}
@article{Gerlich2003,
  author = {Gerlich, D. and Mattes, J. and Eils, R.},
  title = {Quantitative motion analysis and visualization of cellular structures},
  journal = {Methods},
  year = {2003},
  volume = {29},
  pages = {3-13}
}
@phdthesis{Eckley2001,
  author = {Eckley, I.A.},
  title = {Wavelet Methods for Time Series and Spatial Data},
  year = {2001},
  month = {September},
  address = {Bristol, United Kingdom},
  school = {University of Bristol}
}
@article{Verveer1999,
  author = {Verveer, P.J. and Gemkow, M.J. and Jovin, T.M.},
  title = {A comparison of image restoration approaches applied to three-dimensional confocal and wide-field fluorescence microscopy},
  journal = {Journal of Microscopy},
  year = {1999},
  volume = {193},
  number = {1},
  pages = {50-61}
}
@article{Verveer1998,
  author = {Verveer, P.J. and Hanley, Q.S. and Verbeek, P.W. and Vliet, L.J. van and Jovin, T.M.},
  title = {Theory of confocal fluorescence imaging in the programmable array microscope (PAM)},
  journal = {Journal of Microscopy},
  year = {1998},
  volume = {198},
  number = {3},
  pages = {192-198}
}
@misc{FastICA,
  author = {Hurri, J. and {G\"avert}, H. and {S\"arel\"a}, J. and {Hyv\"arinen}, A.},
  title = {{FastICA}: An implementation of the fast fixed-point algorithm for independent component analysis in {MATLAB}, version 2.3},
  year = {2004},
  note = {Helsinki University of Technology, {\tt http://www.cis.hut.fi/projects/ica/fastica/}}
}
@article{Lambacher1996,
  author = {Lambacher, A. and Fromherz, P.},
  title = {Fluorescence interference-contrast microscopy on oxidized silicon using a monomolecular dye layer},
  journal = {Applied Physics A},
  year = {1996},
  volume = {63},
  number = {3},
  pages = {207--216}
}
@phdthesis{Eijlers1993,
  author = {Eijlers, E.J.},
  title = {Scaling and Texture, Pyramids and Fractals},
  year = {1993},
  address = {Delft},
  school = {Information Theory Group, Department of Electrical Engineering, Delft University of Technology}
}
@article{Verveer1997,
  author = {Verveer, P.J. and Jovin, T.M.},
  title = {Acceleration of the {ICTM} image restoration algorithm},
  journal = {Journal of Microscopy},
  year = {1997},
  volume = {188},
  pages = {191--195}
}
@article{Weickert1999,
  author = {Weickert, J.},
  title = {Coherence-enhancing diffusion of color images},
  journal = {Image and Vision Computing},
  year = {1999},
  volume = {17},
  pages = {201--212}
}
@article{Young2003,
  author = {Young, I.T. and Moerman, R. and Doel, L.R. van den and Iordanov, V. and Kroon, A. and Dietrich, H.R.C. and Dedem, G.W.K. van and Bossche, A. and Gray, B.L. and Sarro, L. and Verbeek, P.W. and Vliet, L.J. van},
  title = {Monitoring enzymatic reactions in nanolitre wells},
  journal = {Journal of Microscopy},
  year = {2003},
  volume = {212},
  number = {3},
  pages = {254-263}
}
@article{Michielsen2001,
  author = {Michielsen, K. and Raedt, H. de},
  title = {Integral-Geometry Morphological Image Analysis},
  journal = {Physics Report},
  year = {2001},
  volume = {347},
  pages = {461--538}
}
@article{Young2002,
  author = {Young, I.T. and van Vliet, L.J. and van Ginkel, M. },
  title = {Recursive Gabor filtering},
  journal = {IEEE Transactions on Signal Processing},
  year = {2002},
  volume = {50},
  number = {11},
  pages = {2798--2805}
}
@inproceedings{Young2000,
  author = {Young, I.T. and Vliet, L.J. van and Ginkel, M. van},
  title = {Recursive Gabor Filtering},
  year = {2000},
  volume = {3},
  pages = {342--345},
  month = {September 3-7},
  editor = {Sanfeliu, A. and Villanueva, J.J. and Vanrell, M. and Alquezar, R. and Huang, T. and Serra, J.},
  publisher = {IEEE Computer Society Press, Los Alamitos},
  booktitle = {ICPR15, Proc. 15th Int. Conference on Pattern Recognition (Barcelona, Spain)}
}
@article{Kues2002,
  author = {Kues, T. and Kubitscheck, U.},
  title = {Single Molecule Motion Perpendicular to the Focal Plane of a Microscope: Application to Splicing Factor Dynamics within the Cell Nucleus},
  journal = {Single Molecule},
  year = {2002},
  volume = {3},
  number = {4},
  pages = {218-224}
}
@article{Buelow2001,
  author = {{B\"ulow}, T. and Sommer, G.},
  title = {Hypercomplex Signals - A Novel Extension of the Analytic Signal to the Multidimensional Case},
  journal = {IEEE Transactions on Signal Processing},
  year = {2001},
  volume = {49},
  number = {11},
  pages = {2844--2852}
}
@article{Grunewald2003,
  author = {{Gr\"unewald}, K. and Medalia, O. and Gross, A. and Steven, A.C. and Baumeister, W.},
  title = {Prospects of electron cryotomography to visualize macromolecular complexes inside cellular compartments: implications of crowding},
  journal = {Biophysical Chemistry},
  year = {2003},
  volume = {100},
  pages = {577-591}
}
@inproceedings{Haglund1993,
  author = {Haglund, L. and Knutsson, H. and Granlund, G.H.},
  title = {Scale and Orientation Adaptive Filtering},
  year = {1993},
  pages = {847--855},
  month = {May},
  address = {{Troms\o}, Norway},
  booktitle = {Proceedings of the 8th Scandinavian Conference on Image Analysis}
}
@phdthesis{Haglund1992,
  author = {Haglund, L.},
  title = {Adaptive Multidimensional Filtering},
  year = {1992},
  address = {{Link\"oping, Sweden}},
  school = {{Link\"oping University}}
}
@article{SaintMarc1991,
  author = {Saint-Marc, P. and Chen, J.S. and Medioni, G.},
  title = {Adaptive Smoothing: A General Tool for Early Vision},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1991},
  volume = {13},
  number = {6},
  pages = {514}
}
@article{Verwer1993,
  author = {Verwer, B.J.H. and van Vliet, L.J. and Verbeek, P.W.},
  title = {Binary and Grey-Value Skeletons: Metrics and Algorithms},
  journal = {Int. Journal of Pattern Recognition and Artificial Intelligence},
  year = {1993},
  volume = {7},
  number = {5},
  pages = {1287--1308}
}
@article{Verwer1991,
  author = {Verwer, B.J.H.},
  title = {Local distances for distance transformations in two and three dimensions},
  journal = {Pattern Recognition Letters},
  year = {1991},
  volume = {12},
  pages = {671--682},
  month = {November}
}
@inproceedings{Johansen1986,
  author = {Johansen, P. and Skelboe, S. and Grue, K. and Andersen, J.D.},
  title = {Representing Signals by their Toppoints in Scale Space},
  year = {1986},
  volume = {1},
  pages = {215--217},
  booktitle = {Proceeding of the 8th International Conference on Pattern Recognition}
}
@book{Jahne1997,
  author = {{J\"ahne}, B.},
  title = {Digital Image Processing},
  year = {1997},
  publisher = {Springer},
  address = {Berlin},
  edition = {4th}
}
@inproceedings{Vulovic2010a,
  author = {Vulovic, M. and Brandt, P.L. and Ravelli, R.B.G. and Koster, A.J. and Vliet, L.J. van and Rieger, B.},
  title = {ESTIMATION OF DEFOCUS AND ASTIGMATISM IN TRANSMISSION ELECTRON MICROSCOPY},
  year = {2010},
  pages = {1121-1124},
  month = {April 14-17},
  address = {Rotterdam, The Netherlands},
  booktitle = {IEEE International Symposium on Biomedical Imaging}
}
@article{Verwer1994,
  author = {Verwer, B.J.H. and Vliet, L.J. van and Verbeek, P.W.},
  title = {Binary and grey-value skeletons: Metrics and algorithms},
  journal = {Int. Journal of Pattern Recognition and Artificial Intelligence},
  year = {1994},
  volume = {7},
  number = {5},
  pages = {1287--1308}
}
@article{Shao1998,
  author = {Shao, Z.},
  title = {On the fifth order aberration in a sextupole corrected probe forming system},
  journal = {Review of Scientific Instruments},
  year = {1998},
  volume = {59},
  number = {11},
  pages = {2428-2437}
}
@article{Nitzberg1992,
  author = {Nitzberg, M. and Shiota, T.},
  title = {Nonlinear Image Filtering with Edge and Corner Enhancement},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1992},
  volume = {14},
  number = {8},
  pages = {826--833},
  month = {August}
}
@article{Bernardini1994,
  author = {Bernardini, R. and Cortelazzo, G.M. and Mian, G.A.},
  title = {A New Technique for Twiddle-Factor Elimination in Multidimensional {FFT}'s},
  journal = {IEEE Transactions on Signal Processing},
  year = {1994},
  volume = {42},
  number = {8},
  pages = {2176--2178},
  month = {August},
  annote = {key_fft}
}
@article{Nellist1994,
  author = {Nellist, P.D. and Rodenburg, J.M.},
  title = {Beyond the conventional information limit: the relevant coherence function},
  journal = {Ultramicroscopy},
  year = {1994},
  volume = {54},
  pages = {61-74}
}
@article{Maragos1989,
  author = {Maragos, P.},
  title = {Pattern Spectrum and Multiscale Shape Representation},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1989},
  volume = {11},
  number = {7},
  pages = {701--716}
}
@article{DeMoment1989,
  author = {DeMoment, G.},
  title = {Image Reconstruction and Restoration: Overview of Common Estimation Structures and Problems},
  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
  year = {1989},
  volume = {37},
  number = {12},
  pages = {2024--2036},
  month = {December}
}
@article{Maragos1986,
  author = {Maragos, P. and Schafer, R. W.},
  title = {Morphological Skeleton Representation and Coding of Binary Images},
  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
  year = {1986},
  volume = {34},
  number = {5},
  pages = {1228-1244}
}
@article{GRADALT,
  author = {S. di Zeno},
  title = {A Note on the Gradient of a Multi-Image},
  journal = {Computer Vision, Graphics, and Image Processing},
  year = {1986},
  volume = {33},
  pages = {166--125}
}
@phdthesis{Ecker2004,
  author = {Ecker, C.},
  title = {Conformations of single polymer chains on surfaces},
  year = {2004},
  month = {September},
  address = {Berlin},
  school = {Humboldt-Universit{\"a}t zu Berlin}
}
@article{Haider2000,
  author = {Haider, M. and Uhlemann, S. and Zach, J.},
  title = {Upper limits for the residual aberrations of a high-resolution aberration-corrected {STEM}},
  journal = {Ultramicroscopy},
  year = {2000},
  volume = {81},
  pages = {163-175}
}
@article{Breen2000,
  author = {Breen, E.J. and Jones, R. and Talbot, H.},
  title = {Mathematical Morphology: A Useful Set of Tools for Image Analysis},
  journal = {Statistics and Computing},
  year = {2000},
  volume = {10},
  pages = {105--120}
}
@article{Mucke2004,
  author = {{M\"ucke}, N. and Kreplak, L. and Krimse, R. and Wedig, T. and Herrmann, H. and Aebi, U. and Langowski, J.},
  title = {Assessing the Flexibility of Intermediate Filaments by Atomic Force Microscopy},
  journal = {Journal of Molecular Biology},
  year = {2004},
  volume = {335},
  number = {5},
  pages = {1241-1250}
}
@article{Kusumi1993,
  author = {Kusumi, A. and Sako, Y. and Yamamoto, M.},
  title = {Confined Lateral Diffusion of Membrane Receptors as Studied by Single Particle Tracking (Nanovid Microscopy)},
  journal = {Biophysical Journal},
  year = {1993},
  volume = {65},
  pages = {2021-2040}
}
@article{Tarabusi1999,
  author = {Tarabusi, E.C. and Cohen, J.M. and Colonna, F.},
  title = {Characterization of the Range of the Radon Transform on Homogeneous Trees},
  journal = {Electronic Research Announcements of the American Mathematical Society},
  year = {1999},
  volume = {5},
  pages = {11--17},
  month = {February},
  annote = {key_radon}
}
@article{Dugelay1995,
  author = {Dugelay, J.L. and Sanson, H.},
  title = {Differential methods for the identification of 2D and 3D motion models in image sequences },
  journal = {Signal Processing: Image Communication},
  year = {1995},
  volume = {7},
  pages = {105--127}
}
@article{Gryczynski1995,
  author = {Gryczynski, I. and Malak, H. and Lakowicz, J.R.},
  title = {Three-photon induced fluorescence of 2,5-diphenyloxazole with a femtosecond {Ti:sapphire} laser},
  journal = {Chemical Physics Letters},
  year = {1995},
  volume = {245},
  number = {1},
  pages = {30-35}
}
@article{Fernandez2006a,
  author = {Fernandez, J.-J. and Sorzano, C.O.S. and Marabini, R. and Carazo, J.-M.},
  title = {Strategies for structural determination of biological specimens},
  journal = {IEEE Signal Processing Magazine},
  year = {2006},
  volume = {23},
  number = {3},
  pages = {84-94}
}
@article{Immerkaer1996,
  author = {{Immerk\aer}, J.},
  title = {Fast Noise Variance Estimation},
  journal = {Computer Vision and Image Understanding},
  year = {1996},
  volume = {64},
  number = {2},
  pages = {300-302}
}
@article{Bazin1965,
  author = {Bazin, M.J. and Benoit, J.W.},
  title = {Off-line Global Approach to Pattern Recognition for Bubble Chamber Pictures},
  journal = {IEEE Transactions on Nuclear Science},
  year = {1965},
  volume = {12},
  pages = {291--295},
  month = {August}
}
@article{Lenz1987a,
  author = {Lenz, R.},
  title = {Rotation-Invariant Operators and Scale-Space Filtering},
  journal = {Pattern Recognition Letters},
  year = {1987},
  volume = {6},
  pages = {151--154}
}
@article{Miller1953,
  author = {Miller, S.L.},
  title = {A Production of Amino Acids Under Possible Primitive Earth Conditions},
  journal = {Science},
  year = {1953},
  volume = {117},
  pages = {528--529}
}
@article{Thapa1997,
  author = {Thapa, B.B. and Hughett, P. and Karasaki, K.},
  title = {Semi-automatic Analysis of Rock Fracture Orientations From Borehole Wall Images},
  journal = {Geophysics},
  year = {1997},
  volume = {62},
  number = {1},
  pages = {129--137},
  month = {January/February}
}
@phdthesis{Xu1996,
  author = {Xu, S.},
  title = {Motion and Optical Flow in Computer Vision},
  year = {1996},
  address = {{Link\"oping}, Sweden},
  school = {{Link\"oping} University}
}
@misc{VedelJensen2000,
  author = {Vedel Jensen, E.B.},
  title = {Stereology and Geometric Tomography},
  year = {2000},
  month = {May 20--25},
  howpublished = {Summer School, Sandbjerg Manor, Denmark}
}
@article{Pauwels1995,
  author = {Pauwels, E.J. and Gool, L.J. van and Fiddelaers, P. and Moons, T.},
  title = {An Extended Class of Scale-Invariant and Recursive Scale Space Filters},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1995},
  volume = {17},
  number = {7},
  pages = {691--701},
  month = {July}
}
@inproceedings{Goldfarb1986,
  author = {Goldfarb, L.},
  title = {Metric Data Models and Associative Memories},
  year = {1986},
  volume = {3},
  pages = {53--73},
  booktitle = {IASTED/AFCET International Symposium on Robotics and Artificial Intelligence, University Paul Sabatier, Toulouse}
}
@article{Goldfarb1984,
  author = {Goldfarb, L.},
  title = {A Unified Approach to Pattern Recognition},
  journal = {Pattern Recognition},
  year = {1984},
  volume = {17},
  number = {5},
  pages = {575--582}
}
@article{Silcox1992,
  author = {Silcox, J. and Xu, P. and Loane, R.F.},
  title = {Resolution limits in annular dark field {STEM}},
  journal = {Ultramicroscopy},
  year = {1992},
  volume = {47},
  pages = {173-186}
}
@article{Blair1996,
  author = {Blair, S.C. and Berge, P.A. and Berryman, J.G.},
  title = {Using Two-Point Correlation Functions to Characterize Microgeometry and Estimate Permeabilities of Sandstones and Porous Glass},
  journal = {Journal of Geophysical Research},
  year = {1996},
  volume = {101},
  number = {B9},
  pages = {20359--20375}
}
@article{Rieger2001a,
  author = {Rieger, B. and Vliet, L.J. van},
  title = {Curvature of n-dimensional Space Curves in Grey-Value Images},
  journal = {IEEE Transactions on Image Processing},
  year = {2002},
  volume = {11},
  number = {7},
  pages = {738--745}
}
@article{Deegan1997,
  author = {Deegan, R.D. and Bakajin, O. and Dupont, T.F. and Huber, G. and Nagel, S.R. and Witten, T.A.},
  title = {Capillary flow as the cause of ring stains from dried liquid drops},
  journal = {Nature},
  year = {1997},
  volume = {389},
  pages = {827--829}
}
@article{Biemond1990,
  author = {Biemond, J. and Lagendijk, R.L. and Mersereau, R.M.},
  title = {Iterative Methods for Image Deblurring},
  journal = {Proceedings of the IEEE},
  year = {1990},
  volume = {78},
  number = {5},
  pages = {856--883},
  month = {May}
}
@article{Jones2005,
  author = {Jones, C.W. and Wang, J.C. and Briehl, R.W. and Turner, M.S.},
  title = {Measuring Forces between Protein Fibers by Microscopy},
  journal = {Biophysical Journal},
  year = {2005},
  volume = {88},
  number = {4},
  pages = {2433-2441}
}
@article{Jares-Erijman2003,
  author = {Jares-Erijman, E.A. and Jovin, T.M.},
  title = {{FRET} imaging},
  journal = {Nature Biotechnology},
  year = {2003},
  volume = {21},
  number = {7},
  pages = {1138-1395}
}
@article{Jares-Erijman2006,
  author = {Jares-Erijman, E.A. and Jovin, T.M.},
  title = {Imaging molecular interactions in living cells by {FRET} microscopy},
  journal = {Current Opinion in Chemical Biology},
  year = {2006}
}
@inproceedings{Sorensen1988,
  author = {Sorensen, H.V. and Burrus, C.S.},
  title = {Efficient Computation of the Short-Time {FFT}},
  year = {1988},
  pages = {1894--1897},
  month = {April},
  booktitle = {Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, (New York, U.S.A.)},
  annote = {key_fft}
}
@article{Bonnet2000,
  author = {Bonnet, {No\"el}},
  title = {Artificial Intelligence and Pattern Recognition Techniques in Microscope Image Processing and Analysis},
  journal = {Advances in Imaging and Electron Physics},
  year = {2000},
  volume = {114}
}
@article{Sukanya2000,
  author = {Sukanya, P. and Takamatsu, R. and Sato, M.},
  title = {Multiscale Image Analysis through the Surface-shape Operator},
  journal = {Journal of Electronic Imaging},
  year = {2000},
  volume = {9},
  number = {3},
  pages = {305--316},
  month = {July}
}
@article{Sorensen1987,
  author = {Sorensen, H.V. and Jones, D.L. and Heideman, M.T. and Burrus, C.S.},
  title = {Real-Valued Fast {Fourier} Transform Algorithms},
  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
  year = {1987},
  volume = {35},
  number = {6},
  pages = {849--863},
  month = {June},
  annote = {key_fft}
}
@article{Moon1996,
  author = {Moon, T.K.},
  title = {The Expectation-Maximization Algorithm},
  journal = {IEEE Signal Processing Magazine},
  year = {1996},
  volume = {13},
  number = {6},
  pages = {47--60},
  month = {November}
}
@article{Noble1988,
  author = {Noble, A.},
  title = {Finding Corners},
  journal = {Image and Vision Computing},
  year = {1988},
  volume = {6},
  number = {2},
  pages = {121--128},
  month = {May}
}
@book{Barham2001,
  author = {Barham, P.},
  title = {The Science of Cooking},
  year = {2001},
  publisher = {Springer},
  address = {Berlin, Heidelberg, New York}
}
@article{Bleau1992,
  author = {Bleau, A. and Guise, J. de and LeBlanc, A.-R.},
  title = {A New Set of Fast Algorithms for Mathematical Morphology, I. Idempotent Geodesic Transforms},
  journal = {CVGIP: Image Understanding},
  year = {1992},
  volume = {56},
  number = {2},
  pages = {178--209},
  month = {September}
}
@article{Iverson1995,
  author = {Iverson, L.A. and Zucker, S.W.},
  title = {Logical/Linear Operators for Image Curves},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1995},
  volume = {17},
  number = {10},
  pages = {982--996},
  month = {October}
}
@inproceedings{Tretiak1984,
  author = {Tretiak, O. and Pastor, L.},
  title = {Velocity estimation for mimage sequences with second order differential operators},
  year = {1984},
  pages = {20--22},
  publisher = {IEEE Computer Society Press, Los Alamitos, USA},
  booktitle = {Int. Conf. on Pattern Recognition (Montreal, Canada)}
}
@book{Dudgeon1984,
  author = {Dudgeon, D.E. and Merserau, R.M.},
  title = {Multidimensional Digital Signal Processing},
  year = {1984},
  publisher = {Prentice-Hall}
}
@phdthesis{Iverson1994,
  author = {Iverson, L.A.},
  title = {Toward Discrete Geometric Models for Early Vision},
  year = {1994},
  address = {{Montr\'eal}, Canada},
  school = {McGill University}
}
@article{Potter2004,
  author = {Potter, C.S. and Pulokas, J. and Smith, P. and Suloway, C. and Carragher, B.},
  title = {Robotic grid loading system for a transmission electron microscope},
  journal = {Journal of Structural Biology},
  year = {2004},
  volume = {146},
  pages = {431-440}
}
@book{Kohonen1995,
  author = {Kohonen, T.},
  title = {Self-Organizing Maps},
  year = {1995},
  volume = {30},
  publisher = {Springer-Verlag},
  series = {Springer Series in Information Sciences}
}
@article{Qian1999,
  author = {Qian, H. and Elson, E.L.},
  title = {Quantitative Study of Polymer Conformation and Dynamics by Single-Particle Tracking},
  journal = {Biophysical Journal},
  year = {1999},
  volume = {78},
  pages = {1598-1805}
}
@article{Bennett1999,
  author = {Bennett, N. and Burridge, R. and Saito, N.},
  title = {A Method to Detect and Characterize Ellipses using the Hough Transform},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1999},
  volume = {21},
  number = {7},
  pages = {652--657},
  month = {July},
  annote = {key_radon}
}
@inproceedings{Faas2003,
  author = {Faas, F.G.A. and Vliet, L.J. van},
  title = {3D-Orientation space; filters and sampling},
  year = {2003},
  month = {June 29 -July 2},
  booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden)}
}
@article{Qian1991,
  author = {Qian, H. and Sheetz, M.P. and Elson, E.L.},
  title = {Single Particle Tracking; Analysis of diffusion flow in two-dimensional systems},
  journal = {Biophysical Journal},
  year = {1991},
  volume = {60},
  pages = {910-921}
}
@article{Mallat1992a,
  author = {Mallat, S.G. and Hwang, W.L.},
  title = {Singularity Detection and Processing with Wavelets},
  journal = {IEEE Transactions on Information Theory},
  year = {1992},
  volume = {38},
  number = {2},
  pages = {617--643},
  month = {March}
}
@article{Qian1994,
  author = {Qian, Z. and Lu, C. and An, M. and Tolimieri, R.},
  title = {Self-Sorting In-Place {FFT} Algorithm with Minimum Working Space},
  journal = {IEEE Transactions on Signal Processing},
  year = {1994},
  volume = {42},
  number = {10},
  pages = {2835--2836},
  month = {October},
  annote = {key_fft}
}
@inproceedings{Williams1998,
  author = {Williams, G.M. Jr and Marsh, H.H. and Hinds, M.},
  title = {Back-Illuminated {CCD} Imagers for High Information Content Digital Photography},
  year = {1998},
  series = {Proceedings of SPIE}
}
@article{Ragnemalm1992,
  author = {Ragnemalm, I.R.},
  title = {Neighborhoods for Distance Transformation Using Ordered Propagation},
  journal = {CVGIP: Image Understanding},
  year = {1992},
  volume = {56},
  number = {3},
  pages = {399--409},
  month = {November}
}
@techreport{Andersson1999,
  author = {Andersson, M. and Wiklund, J. and Knutsson, H.},
  title = {Filter Networks},
  year = {1999},
  institution = {{Link\"oping} University}
}
@techreport{Andersson1998,
  author = {Andersson, M. and Wiklund, J. and Knutsson, H.},
  title = {Sequential Filter Trees for Efficient 2{D}, 3{D} and 4{D} Orientation Estimation},
  year = {1998},
  institution = {{Link\"oping} University}
}
@article{Duits2004,
  author = {Duits, R. and Florak, L.M.J. and Graaf, J. de and Haar Romey, B.M. ter},
  title = {On the Axioms of Scale Space Theory},
  journal = {Journal of Mathematical Imaging and Vision},
  year = {2004},
  volume = {20},
  number = {3},
  pages = {267-298}
}
@article{Louverdis2002,
  author = {Louverdis, G. and Vardavoulia, M.I. and Andreadis, I. and Tsalides, Ph.},
  title = {A New Approach to Morphological Color Image Processing},
  journal = {Pattern Recognition},
  year = {2002},
  volume = {35},
  pages = {1733-1741}
}
@article{Grunewald2003a,
  author = {{Gr\"unewald}, K. and Desai, P. and Winkler, D.C. and Heymann, J.B. and Belnap, D. and Baumeister, W. and Steven, A.C.},
  title = {Three-Dimensional Structure of Herpes Simplex Virus from Cryo-Electron Tomography},
  journal = {Science},
  year = {2003},
  volume = {302},
  pages = {1396-1398}
}
@article{Jamitzky2001,
  author = {Jamitzky, F. and Stark, R.W. and Bunk, W. and Thalhammer, S. and {R\"ath}, C. and Aschenbrenner, T. and Morfill, G.E. and Heckl, W.M.},
  title = {Scaling-index method as an image processing tool in scanning-probe microscopy},
  journal = {Ultramicroscopy},
  year = {2001},
  volume = {86},
  number = {1-2},
  pages = {241-246}
}
@phdthesis{Andersson1992,
  author = {Andersson, M.T.},
  title = {Controllable Multidimensional Filters and Models in Low Level Computer Vision},
  year = {1992},
  address = {{Link\"oping, Sweden}},
  school = {{Link\"oping University}}
}
@inproceedings{Ye1997,
  author = {Ye, S. and Rabiller, P. and Keskes, N.},
  title = {Automatic High Resolution Sedimentary Dip Detection on Borehole Imagery},
  year = {1997},
  month = {June 15-19},
  booktitle = {SPWLA 38th Annual Logging Symposium}
}
@article{Shannon1949,
  author = {Shannon, C.E.},
  title = {Communication in the Presence of Noise},
  journal = {Proceedings of the IRE},
  year = {1949},
  volume = {37},
  number = {1},
  pages = {10--21},
  note = {[reprinted in: Proceedings of the IEEE, vol. 86, no. 2, pp. 447-457, February 1998]}
}
@article{Peters2003,
  author = {Peters, P.J. and Vey, M. and Donselaar, E. van and Mironov, A. Jr. and Erpel, S. and Peretx, D. and Lexlerc, E. and DeArmond, S.J. and Burton, D.R. and Williamson, R.A. and Prusiner, S.B.},
  title = {Trafficking of prion proteins through a novel caveolae-mediated endosomal pathway},
  journal = {Journal of Cell Biology},
  year = {2001},
  volume = {162},
  pages = {703-717}
}
@article{Shannon1948,
  author = {Shannon, C.E.},
  title = {A Mathematical Theory of Communication},
  journal = {The Bell System Technical Journal},
  year = {1948},
  volume = {27},
  pages = {379--423, 623--656},
  month = {July, October}
}
@article{Robinson2004,
  author = {Robinson, K. and Whelan, P.F.},
  title = {Efficient morphological reconstruction: a downhill filter},
  journal = {Pattern Recognition Letters},
  year = {2004},
  volume = {25},
  number = {15},
  pages = {1759-1767}
}
@article{Cherny1999,
  author = {Cherny, D.I. and Striker, G. and Subramaniam, V. and Jett, S.D. and Pale\v{c}ek, E. and Jovin, T.M.},
  title = {{DNA} Bending Due to Specific p53 and p53 Core Domain-{DNA} Interactions Visualized by Electron Microscopy},
  journal = {Journal of Molecular Biology},
  year = {1999},
  volume = {294},
  number = {4},
  pages = {1015-1026}
}
@inproceedings{Rieger2001,
  author = {Rieger, B. and Vliet, L.J. van},
  title = {Estimation of Curvature of n-dimensional Space Curves in Grey-value Images},
  year = {2001},
  pages = {436--442},
  month = {May 30 -June 1},
  editor = {Lagendijk, R. and Pimentel, A. and Wilkinson, M.},
  address = {Delft},
  booktitle = {Proc. ASCI 2001, 7th Annual Conf. of the Advanced School for Computing and Imaging},
  organization = {ASCI}
}
@inproceedings{Rieger2003,
  author = {Rieger, B. and Vliet, L.J. van and Verbeek, P.W.},
  title = {Estimation of curvature based shape properties of surfaces in 3D grey-value images},
  year = {2003},
  pages = {262-267},
  month = {June 29 -July 2},
  editor = {{Big\"un}, J. and Gustavsson, T.},
  publisher = {Springer-Verlag},
  series = {LNCS 2749},
  address = {Berlin},
  booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) }
}
@article{Borgefors1986,
  author = {Borgefors, G.},
  title = {Distance transformations in digital images},
  journal = {Computer Vision, Graphics and Image Processing },
  year = {1986},
  volume = {34},
  pages = {344--371}
}
@article{Wiener1949,
  author = {Wiener, N.},
  title = {Extrapolation, Interpolation and Smoothing of stationary Time Series},
  journal = {Cambridge, MA : M.I.T. Press},
  year = {1949}
}
@article{Borgefors1984,
  author = {Borgefors, G.},
  title = {Distance transformations in arbitrary dimensions},
  journal = {Computer Vision, Graphics and Image Processing },
  year = {1984},
  volume = {27},
  pages = {321-345}
}
@article{Dougherty2001,
  author = {Dougherty, Edward R.},
  title = {Optimal Conjunctive Granulometric Bandpass Filters},
  journal = {Journal of Mathematical Imaging and Vision},
  year = {2001},
  volume = {14},
  pages = {39--51}
}
@article{Pei2001,
  author = {Pei, S.-C. and Ding, J.-J. and Chang, J.-H.},
  title = {Efficient Implementation of Quaternion Fourier Transform, Convolution, and Correlation by 2D Complex FFT},
  journal = {IEEE Transactions on Signal Processing},
  year = {2001},
  volume = {49},
  number = {11},
  pages = {2783--2797},
  annote = {key_fft}
}
@book{Scheck1999,
  author = {F. Scheck},
  title = {Mechanics: From {N}ewton's Law to Deterministic Chaos},
  year = {1999},
  publisher = {Springer},
  address = {Berlin}
}
@article{Gordon2004,
  author = {Gordon, M.P. and Ha, T. and Selvin, P.R.},
  title = {Single-molecule high-resolution imaging with photobleaching},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2004},
  volume = {101},
  number = {17},
  pages = {6462-6465}
}
@inproceedings{Koenderink2002,
  author = {Koenderink, J.J. and Doorn, A.J. van},
  title = {Image Processing Done Right},
  year = {2002},
  volume = {2350},
  pages = {158--172},
  editor = {Heyden, A.},
  publisher = {Springer-Verlag},
  series = {Lecture Notes in Computer Science},
  booktitle = {Proceedings of the ECCV 2002}
}
@article{Huang1979,
  author = {Huang, T.S. and Yang, G.J. and Tang, G.Y.},
  title = {A Fast Two-Dimensional Median Filtering Algorithm},
  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
  year = {1979},
  volume = {27},
  number = {1},
  pages = {13--18},
  month = {February}
}
@misc{LevitzXXXX,
  author = {Levitz, P.},
  title = {Evaluation of 3D Structural Properties of Porous Materials from 2D Sections: Morphology and Chord Length Distribution Functions},
  howpublished = {www}
}
@inproceedings{Vliet1988a,
  author = {Vliet, L.J. van and Young, I.T. and Beckers, A.L.D.},
  title = {An edge detection model based on nonlinear Laplace filtering},
  year = {1988},
  pages = {63--73},
  editor = {Gelsema, E.S. and Kanal L.N.},
  publisher = {Elsevier Science Publishers B.V.},
  address = {North-Holland},
  booktitle = {Pattern Recognition and Artificial Intelligence}
}
@article{Hansen2001,
  author = {Hansen, M.B. and Zwet, E.W. van},
  title = {Nonparametric Estimation of the Chord Length Distribution},
  journal = {Advances in Applied Probability},
  year = {2001},
  volume = {33}
}
@article{Baddeley1997,
  author = {Baddeley, A.J. and Gill, R.D.},
  title = {Kaplan-Meier Estimators for Interpoint Distance Distributions for Spatial Point Processes},
  journal = {Annals of Statistics 25},
  year = {1997},
  volume = {25},
  pages = {263--292}
}
@inproceedings{Vliet1995a,
  author = {Vliet, L.J. van and Verbeek, P.W.},
  title = {Estimators for Orientation and Anisotropy in Digitized Images},
  year = {1995},
  pages = {442--450},
  month = {June},
  editor = {van Katwijk, J. and Gerbrands, J.J. and van Steen, M.R. and Tonino, J.F.M.},
  address = {Heijen, The Netherlands},
  booktitle = {ASCI'95, Proceedings of the First Annual Conference of the Advanced School for Computing and Imaging}
}
@article{Maintz1998,
  author = {Maintz, J.B.A. and Viergever, M.A.},
  title = {A survey of medical image registration},
  journal = {Medical Image Analysis},
  year = {1998},
  volume = {1},
  number = {1},
  pages = {1-37}
}
@book{Barrett1981,
  author = {Barrett, H.H. and Swindell, W.},
  title = {Radiological Imaging; The Theory of Image Formation, Detection, and Processing},
  year = {1981},
  publisher = {Academic Press},
  annote = {key_radon}
}
@book{Honerkamp1998,
  author = {Honerkamp, J.},
  title = {Statistical Physics: An Advanced Approach with Applications},
  year = {1998},
  publisher = {Springer-Verlag}
}
@article{Maintz1996,
  author = {Maintz, J.B.A. and Elsen, P.A. van den and Viergever, M.A.},
  title = {Evaluation of ridge seeking operators for multimodality medical image matching},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1996},
  volume = {18},
  number = {4},
  pages = {353--365}
}
@book{Hyvarinen2001,
  author = {{Hyv\"arinen}, A. and Karhumen, J. and Oja, E.},
  title = {Independant Component Analysis},
  year = {2001},
  publisher = {Wiley Interscience},
  address = {New York}
}
@techreport{Almansa1998,
  author = {Almansa, A. and Lindeberg, T.},
  title = {Fingerprint Enhancement by Shape Adaptation of Scale-Space Operators with Automatic Scale Selection},
  year = {1998},
  institution = {University of the Republic of Uruguay},
  annote = {Partial document}
}
@article{Hofmann1984,
  author = {Hofmann, H. and Voss, T. and {K\"uhn}, K. and Engel, J.},
  title = {Localization of flexible sites in thread-like molecules from electron micrographs. Comparison of interstitial, basement membrane and intima collagens},
  journal = {Journal of Molecular Biology},
  year = {1984},
  volume = {172},
  number = {3},
  pages = {325-343}
}
@inproceedings{Aguado1996,
  author = {Aguado, A.S. and Montiel, M.E. and Nixon, M.S.},
  title = {Improving Parameter Space Decomposition for the Generalised {Hough} Transform},
  year = {1996},
  volume = {3},
  pages = {627--630},
  month = {16--19 September},
  booktitle = {International Conference on Image Processing}
}
@article{Roberts2001,
  author = {Roberts, A.},
  title = {Curvature attributes and their application to 3D interpreted horizons},
  journal = {First Break},
  year = {2001},
  volume = {19},
  number = {2},
  pages = {85-100},
  month = {February}
}
@inproceedings{Vliet1993akort,
  author = {Vliet, L.J. van and Verbeek, P.W. },
  title = {Curvature and Bending Energy in Digitized 2D and 3D Images },
  year = {1993},
  pages = {1403--1410 },
  address = {{Troms\o }, Norway},
  booktitle = {SCIA'93}
}
@article{Koenderink1992b,
  author = {Koenderink, J.J. and Doorn, A.J. van},
  title = {Second-order optic flow},
  journal = {Journal of the Optical Society of America A},
  year = {1992},
  volume = {9},
  number = {4},
  pages = {530-538}
}
@book{Lakowicz1999,
  author = {Lakowicz, J.R.},
  title = {Principles of Fluorescence Spectroscopy},
  year = {1999},
  publisher = {Kluwer Academic Press},
  address = {New York},
  edition = {2nd}
}
@article{Cardoso1998,
  author = {Cardoso, J.-F.},
  title = {Blind signal separation: statistical principles},
  journal = {Proceedings of the IEEE},
  year = {1998},
  volume = {86},
  number = {10},
  pages = {2009-2025}
}
@article{Koenderink1992a,
  author = {Koenderink, J.J. and Doorn, A.J. van},
  title = {Surface shape and curvature scales},
  journal = {Image and Vision Computing},
  year = {1992},
  volume = {10},
  number = {8},
  pages = {557--565}
}
@article{Kornprobst1999,
  author = {Kornprobst, P. and Sand, S. and Deriche, R. and Aubert, G.},
  title = {Image Sequence Analysis via Partial Differential Equations},
  journal = {Journal of Mathematical Imaging and Vision},
  year = {1999},
  volume = {11},
  pages = {5--26}
}
@article{Shevelev1998,
  author = {Shevelev, I.A.},
  title = {Second-order features extraction in the cat visual cortex: selective and invariant sensitivity of neurons to the shape and orientation of crosses and corners},
  journal = {BioSystems},
  year = {1998},
  volume = {48},
  pages = {195-204}
}
@article{Bacia2003,
  author = {Bacia, K. and Schwille, P.},
  title = {A dynamic view of cellular processes by in vivo fluorescence auto- and cross-correlation spectroscopy},
  journal = {Methods},
  year = {2003},
  volume = {29},
  number = {1},
  pages = {74-85}
}
@article{Yuille1986,
  author = {Yuille, A.L. and Poggio, T.},
  title = {Scaling theorems for zero crossings},
  journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
  year = {1986},
  volume = {8},
  number = {1},
  pages = {15--25},
  month = {January}
}
@article{Volkmer2000,
  author = {Volkmer, A. and Subramaniam, V. and Birch, D.J. and Jovin, T.M.},
  title = {One- and two-photon excited fluorescence lifetimes and anisotropy decays of green fluorescent proteins},
  journal = {Biophysical Journal},
  year = {2000},
  volume = {78},
  number = {3},
  pages = {1589-1598}
}
@article{Bigelow2003,
  author = {Bigelow, C.E. and Conover, D.L. and Foster, T.H.},
  title = {Confocal fluorescence spectroscopy and anisotropy imaging system},
  journal = {Optics Letters},
  year = {2003},
  volume = {28},
  number = {9},
  pages = {695-697},
  month = {May}
}
@inproceedings{Coeurjolly2001,
  author = {Coeurjolly, D. and Miguet, S. and Tougne, L.},
  title = {Discrete Curvature Based on Osculating Circle Estimation},
  year = {2001},
  volume = {2059},
  pages = {303--312},
  month = {May},
  editor = {Arcelli, C. and Cordella, L.P. and Sanniti di Baja, G. },
  publisher = {Springer-Verlag},
  series = {Lecture Notes on Computer Science},
  address = {Capri, Italy},
  booktitle = {Visual Form 2001}
}
@book{Kak1988,
  author = {Kak, A. C. and Slaney, M.},
  title = {Principles of Computerized Tomographic Imaging},
  year = {1988},
  publisher = {IEEE Press}
}
@inproceedings{Cao1999,
  author = {Cao, {Fr\'ed\'eric}},
  title = {Morphological Scale Space and Mathematical Morphology},
  year = {1999},
  volume = {1682},
  pages = {164--174},
  month = {September},
  editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
  publisher = {Springer-Verlag},
  series = {Lecture Notes on Computer Science},
  address = {Berlin Heidelberg},
  booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)}
}
@book{Leibovic1990,
  author = {Leibovic (ed), K.N.},
  title = {Science of Vision},
  year = {1990},
  publisher = {Springer-Verlag}
}
@inbook{Hediger2004,
  author = {Hediger, F. and Taddei, A. and Neumann, F.R. and Gasser, S.M.},
  title = {Methods for Visualizing Chromatin Dynamics in Living Yeast},
  year = {2004},
  volume = {375},
  publisher = {Elsevier Academic Press},
  series = {Methods in Enzymology},
  chapter = {22}
}
@article{Axelrod2001,
  author = {Axelrod, D.},
  title = {Total Internal Reflection Fluorescence Microscopy in Cell Biology},
  journal = {Traffic},
  year = {2001},
  volume = {2},
  pages = {764-774}
}
@article{Kuwahara1980,
  author = {Kuwahara, M. and Hachimura, K. and Kinoshita, M.},
  title = {Image enhancement and left ventricular contour extraction techniques applied to radioisotope angiocardiograms},
  journal = {Audiomedica},
  year = {1980},
  volume = {3},
  pages = {107-119}
}
@inproceedings{Whitworth1999,
  author = {Whitworth, M.B. and Alava, J.M.},
  title = {The imaging and measurement of bubbles in bread doughs},
  year = {1999},
  pages = {221-231},
  editor = {Campbell, G.M. and Webb, C. and Pandiella, S.S.},
  publisher = {Eagan Press},
  address = {St. Paul, USA},
  booktitle = {Bubbles In Food}
}
@article{Daugman1988,
  author = {Daugman, J.G.},
  title = {Pattern and motion vision without Laplacian zero-crossings},
  journal = {Journal of the Optical Society of America A},
  year = {1988},
  volume = {5},
  number = {7},
  pages = {1142--1148}
}
@book{Rutishauer1990,
  author = {Rutishauer, H.},
  title = {Lectures on numerical mathematics},
  year = {1990},
  publisher = {{Birkh\"auser}}
}
@article{Nagel1983,
  author = {Nagel, H.H.},
  title = {Displacement vectors derived from second-order intensity variations in image sequences},
  journal = {Computer Graphics and Image Processing},
  year = {1983},
  volume = {21},
  pages = {85-117}
}
@misc{BaddeleyXXXX,
  author = {Baddeley, A.},
  title = {Spatial Sampling and Censoring},
  howpublished = {Some chapter. From www}
}
@article{Nagel1986,
  author = {Nagel, H.H. and Enkelmann, W.},
  title = {An investigation of smoothness constraints for the estimation of displacement vector fields form image sequences},
  journal = {IEEE Transactions of Pattern Recognition and Machine Intelligence},
  year = {1986},
  volume = {8},
  pages = {168-176}
}
@article{Daugman1985,
  author = {Daugman, J.G.},
  title = {Uncertainty Relation for Resolution in Space, Spatial Frequency, and Orientation Optimized by Two-dimensional Visual Cortical Filters},
  journal = {Journal of the Optical Society of America A},
  year = {1985},
  volume = {2},
  number = {7},
  pages = {1160--1169},
  month = {July}
}
@article{Sorzano2004,
  author = {Sorzano, C.O.S. and Marabini, R. and Vel\'azquez-Muriel, J. and Bilbao-Castro, J.R. and Scherees, S.H.W. and Carazo, J.M. and Pascual-Montano, A.},
  title = {{XMIPP:} a new generation of an open-source image processing package for electron microscopy},
  journal = {Journal of Structural Biology},
  year = {2004},
  volume = {148},
  pages = {194-204}
}
@article{Sorzano2001,
  author = {Sorzano, C.O.S. and Marabini, R. and Boisset, N. and Rietzel, E. and {Schr\"oder}, R. and Herman, G.T. and Carazo, J.M.},
  title = {The Effect of Overabundant Projection Directions on {3D} Reconstruction Algorithms},
  journal = {Journal of Structural Biology},
  year = {2001},
  volume = {133},
  pages = {108-118}
}
@inproceedings{Kerbyson1995,
  author = {Kerbyson, D.J. and Atherton, T.J.},
  title = {Circle Detection using {Hough} Transform Filters},
  year = {1995},
  pages = {370--374},
  month = {4--6 July},
  booktitle = {Image Processing and Its Applications}
}
@article{Meyer2004,
  author = {Meyer, R.R. and Kirkland, A.I. and Saxton, W.O.},
  title = {A new method for the determination of the wave aberration function for high-resolution {TEM}. {2. Measurement} of the antisymmetric aberrations},
  journal = {Ultramicroscopy},
  year = {2004},
  volume = {99},
  pages = {115-123}
}
@article{Lin1999,
  author = {Lin, T. and Chen, Z. and Usha, R. and Stauffacher, C.V. and Dai, J.-B. and Schmidt, T. and Johnson, J.E.},
  title = {The Refined Crystal Structure of Cowpea Mosaic Virus at 2.8 Resolution},
  journal = {Virology},
  year = {1999},
  volume = {265},
  pages = {20-34}
}
@book{Mitra2000,
  author = {Mitra (Ed), S. and Sicuranza (Ed), G.},
  title = {Nonlinear Image Processing},
  year = {2000},
  publisher = {Academic Press}
}
@book{HandbookCP1980,
  title = {Handbook of Chemistry and Physics},
  year = {1980},
  editor = {Lide, D.R.},
  publisher = {CRC Press},
  edition = {60th}
}
@article{Olsen1994,
  author = {Olsen, T. and DeStefano, J.},
  title = {Wavelet Localization of the {R}adon Transform},
  journal = {IEEE Transactions on Signal Processing},
  year = {1994},
  volume = {42},
  number = {8},
  pages = {2055--2067},
  month = {August}
}
@inproceedings{Wijk2004,
  author = {Wijk, C. van and Truyen, R. and Gelder, R.E. van and Vliet, L.J. van and Vos, F.M.},
  title = {On Normalized Convolution to Measure Curvature Features for Automatic Polyp Detection},
  year = {2004},
  pages = {200-208},
  editor = {Barillot, C. and Haynor, D.R. and Hellier, P.},
  booktitle = {LNCS 3216, MICCAI'04}
}
@article{Aitken1995,
  author = {Aitken, V.C. and Schwartz, H.M.},
  title = {A Comparison of Rotational Representation in Structure and Motion Estimation for Maneuvering Objects},
  journal = {IEEE Transactions on Image Processing},
  year = {1995},
  volume = {4},
  number = {4},
  pages = {516--520}
}
@article{Barber1996,
  author = {Barber, C.B. and Dobkin, D.P. and Huhdanpaa, H.},
  title = {The Quickhull Algorithm for Convex Hulls},
  journal = {ACM Transactions on Mathematical Software},
  year = {1996},
  volume = {22},
  number = {4},
  pages = {469--483},
  month = {December}
}
@book{Wilson1984a,
  author = {Wilson, T. and Sheppard, C.J.R.},
  title = {Theory and Practice of Scanning Optical Microscopy},
  year = {1984},
  publisher = {Academic Press},
  address = {London,New York},
  annote = {ph2341}
}
@misc{Zach2001,
  author = {Zach, J.},
  title = {Method for detecting geometrical-optical aberrations},
  year = {2001},
  howpublished = {WO 01.56057}
}
@article{Lee2001,
  author = {Lee, S.-H. and Blake, R.},
  title = {Neural Synergy in Visual Grouping: When Good Continuation Meets Common Fate},
  journal = {Vision Research},
  year = {2001},
  volume = {41},
  number = {16},
  pages = {2057--2064},
  month = {July}
}
@article{Lichte1996,
  author = {Lichte, H.},
  title = {Electron holography: optimum position of the biprism in the electron microscope},
  journal = {Ultramicroscopy},
  year = {1996},
  volume = {64},
  pages = {89-109}
}
@article{Lee2005,
  author = {Lee, N.K. and Kapanidis, A.N. and Wang, Y. and Michalet, X. and Mukhopadhyay, J. and Ebright, R.H. and Weiss, S.},
  title = {Accurate {FRET} Measurements within Single Diffusing Biomolecules Using Alternating-Laser Excitation},
  journal = {Biophysical Journal},
  year = {2005},
  volume = {88},
  number = {4},
  pages = {2939-2953}
}
@misc{Verbeek1999,
  author = {Verbeek, P.W.},
  year = {1999},
  howpublished = {private communications},
  note = {The GST as a projection operator}
}
@article{Cuisenaire1999,
  author = {Cuisenaire, O. and Macq, B.},
  title = {Fast Euclidean distance transformation by propagation using multiple neighborhoods},
  journal = { Computer Vision and Image Understanding},
  year = {1999},
  volume = {76},
  number = {2},
  pages = {163-172}
}
@inproceedings{Verbeek1995,
  author = {Verbeek, P.W. and Vliet, L.J. van},
  title = {Approximate Analytic Paraboloid Dilation},
  year = {1995},
  volume = {1},
  pages = {95--102},
  month = {June 6-9},
  editor = {Borgefors, G.},
  booktitle = {9th Scandinavian Conference on Image Analysis (Uppsala, Sweden)}
}
@inproceedings{Verbeek1998,
  author = {Verbeek, P.W. and van Vliet, L.J. and van de Weijer, J.},
  title = {Improved Curvature and Anisotropy Estimation for Curved Line Bundles},
  year = {1998},
  pages = {528--533},
  month = {17-20 August},
  editor = {Jain, A.K. and Venkatesh, S. and Lovell, B.C.},
  publisher = {IEEE Computer Society Press, Los Alamitos},
  booktitle = {ICPR'98, Proc. 14th Int. Conference on Pattern Recognition}
}
@article{Verbeek1990,
  author = {Verbeek, P.W. and Verwer, B.J.H},
  title = {Shading from shape, the eikonal equation solved by grey-weighted distance transform},
  journal = {Pattern Recognition Letters},
  year = {1990},
  volume = {11},
  pages = {681--690}
}
@misc{Verbeek1996,
  author = {Verbeek, P.W.},
  title = {Angular Deconvolution},
  year = {1996},
  howpublished = {Internal Communication}
}
@article{Verbeek1994,
  author = {Verbeek, P.W. and Vliet, L.J. van},
  title = {On the location error of curved edges in low-pass filtered {2-D} and {3-D} images},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1994},
  volume = {16},
  number = {7},
  pages = {726--733}
}
@article{Verbeek1993,
  author = {Verbeek, P.W. and Vliet, L.J. van},
  title = {Estimators of {2D} edge length and position, {3D} surface area and position in sampled grey-valued images},
  journal = {BioImaging},
  year = {1993},
  volume = {1},
  number = {1},
  pages = {46--61}
}
@inproceedings{Verbeek1992,
  author = {Verbeek, P.W. and Vliet, L.J. van},
  title = {Line and Edge Detection by Symmetry Filters},
  year = {1992},
  volume = {III},
  pages = {749--753},
  month = {August 30-September 3},
  publisher = {IEEE Computer Society Press, Los Alamitos, USA},
  booktitle = {Proc. 11th IAPR Int. Conf. on Pattern Recognition (ICPR11, The Hague, The Netherlands)}
}
@article{Griffith1973,
  author = {Griffith, A.K.},
  title = {Edge Detection in Simple Scenes Using A Priori Information},
  journal = {IEEE Transactions on Computers},
  year = {1973},
  volume = {22},
  number = {4},
  pages = {371--381},
  month = {April}
}
@article{Chermant2001,
  author = {Chermant, J.-L. and Chermant, L. and Coster, M. and Dequiedt, A.-S. and Redon, C.},
  title = {Some Fields of Applications of Automatic Image Analysis in Civil Engineering},
  journal = {Cement {\&} Concrete Composites},
  year = {2001},
  volume = {23},
  pages = {157--169}
}
@article{Thrift1983,
  author = {Thrift, P.R. and Dunn, S.M.},
  title = {Approximating Point-Set Images by Line Segments Using a Variation of the {H}ough Transform},
  journal = {Computer Vision, Graphics and Image Processing},
  year = {1983},
  volume = {21},
  number = {3},
  pages = {383--394},
  annote = {key_radon}
}
@misc{Rull1993,
  author = {Rull, P.H.},
  title = {{BARRY}: An Autonomous Train-Spotter},
  year = {1993}
}
@article{Schellman1980a,
  author = {Schellman, J.A.},
  title = {The flexibility of {DNA : II. Spontaneous} and ligand induced distortions},
  journal = {Biophysical Chemistry},
  year = {1980},
  volume = {11},
  number = {3},
  pages = {329-337}
}
@article{Tang2001,
  author = {Tang, Chi-Keung and Medioni, G. and Lee, Mi-Suen},
  title = {N-dimensional tensor voting and application to epipolar geometry estimation},
  journal = {I