Index: /qipapers.bib
===================================================================
--- /qipapers.bib	(revision 169)
+++ /qipapers.bib	(revision 170)
@@ -11223,7171 +11223,3 @@
   journal = {Signal Processing},
   year = {1994},
-  volume = {38},
-  pages = {79--98}
-}
-@article{Lichte1996a,
-  author = {Lichte, H. and Geiger, D. and Harscher, A. and Heindl, E. and Lehman, M. and Malamidis, D. and Orchowski, A. and Rau, W.-D.},
-  title = {Artefacts in electron holography},
-  journal = {Ultramicroscopy},
-  year = {1996},
-  volume = {64},
-  pages = {67-77}
-}
-@article{Thust1996,
-  author = {Thust, A. and Overwijk, M.H.F. and Coene, W.M.J. and Lentzen, M.},
-  title = {Numerical correction of lens aberrations in phase-retrieval {HRTEM}},
-  journal = {Ultramicroscopy},
-  year = {1996},
-  volume = {64},
-  pages = {249-264}
-}
-@article{Katsevich1997,
-  author = {Katsevich, A.I.},
-  title = {Local Tomography for the Generalized Radon Transform},
-  journal = {SIAM J. Appl. Math.},
-  year = {1997},
-  volume = {57},
-  number = {4},
-  pages = {1128--1162},
-  month = {August},
-  annote = {key_radon}
-}
-@article{Lopez1999,
-  author = {{L\'opez}, A.M. and Lumbreras, F. and Serrat, J. and Villanueva, J.J.},
-  title = {Evaluation of Methods for Ridge and Valley Detection},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1999},
-  volume = {21},
-  number = {4},
-  pages = {327--335},
-  month = {April}
-}
-@article{Beil1994,
-  author = {Beil, W.},
-  title = {Steerable Filters and Invariance Theory},
-  journal = {Pattern Recognition Letters},
-  year = {1994},
-  volume = {15},
-  pages = {453--460}
-}
-@book{Stauffer1985,
-  author = {Stauffer, D. and Aharony, A.},
-  title = {Introduction to Percolation Theory},
-  year = {1985, 1994},
-  publisher = {Taylor \& Francis},
-  edition = {second}
-}
-@inproceedings{Simoncelli1996a,
-  author = {Simoncelli, E.P. and Adelson, E.H.},
-  title = {Noise Removal via Bayesian Wavelet Coring},
-  year = {1996},
-  pages = {379--382},
-  booktitle = {3rd IEEE International Conference on Image Processing (Lausanne, Switzerland)}
-}
-@article{Shafarenko1997,
-  author = {Shafarenko, Leila and Petrou, Maria and Kittler, Josef},
-  title = {Automatic Watershed Segmentation of Randomly Textured Color Images},
-  journal = {IEEE Transactions on Image Processing},
-  year = {1997},
-  volume = {6},
-  number = {11},
-  pages = {1530--1544},
-  month = {November}
-}
-@article{Duhamel1988,
-  author = {Duhamel, P. and Piron, B. and Etcheto, J.M.},
-  title = {On Computing the Inverse DFT},
-  journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
-  year = {1988},
-  volume = {36},
-  number = {2},
-  pages = {285--286},
-  month = {February},
-  annote = {key_fft}
-}
-@article{Moser2006,
-  author = {Moser, C. and Mayr, T. and Klimant, I.},
-  title = {Filter cubes with built-in ultrabright light-emitting diodes as exchangeable excitation light sources in fluorescence microscopy},
-  journal = {Journal of Microscopy},
-  year = {2006},
-  volume = {222},
-  pages = {135-140}
-}
-@article{Morrone1988,
-  author = {Morrone, M.C. and Burr, D.C.},
-  title = {Feature Detection in Human Vision: a Phase-Dependent Energy Model},
-  journal = {Proc. Roc. Soc. Lond. B},
-  year = {1988},
-  volume = {235},
-  pages = {221--245}
-}
-@article{Giordano2002,
-  author = {Giordano, L. and Jovin, T.M. and Irie, M. and Jare-Erijman, E.A.},
-  title = {Diheteroarylethenes as Thermally Stable Photoswitchable Acceptors in Photochromic Fluorescence Resonance Energy Transfer ({pcFRET})},
-  journal = {Journal of the American Chemical Society},
-  year = {2002},
-  volume = {124},
-  pages = {7481-7489}
-}
-@article{Iddir2005,
-  author = {Iddir, H. and Disko, M.M. and Ogut, S. and Browning, N.D.},
-  title = {Atomic scale characterization of the Pt/TiO$_2$ interface},
-  journal = {Micron},
-  year = {2005},
-  volume = {36},
-  pages = {233-241}
-}
-@article{Bleau1992a,
-  author = {Bleau, A. and Guise, J. de and LeBlanc, A.-R.},
-  title = {A New Set of Fast Algorithms for Mathematical Morphology, {II}. Identification of Topographic Features on Grayscale Images},
-  journal = {CVGIP: Image Understanding},
-  year = {1992},
-  volume = {56},
-  number = {2},
-  pages = {210--229},
-  month = {September}
-}
-@article{Starink1996,
-  author = {Starink, J.P.P. and Jovin, T.M.},
-  title = {Background correction in scanning probe microscope recordings of macromolecules},
-  journal = {Surface Science},
-  year = {1996},
-  volume = {359},
-  pages = {291-305}
-}
-@inproceedings{Barth2000,
-  author = {Barth, E.},
-  title = {The minors of the structure tensor},
-  year = {2000},
-  pages = {221--228},
-  editor = {Sommer, G. and Krger, N. and Perwass, C.},
-  publisher = {Springer},
-  address = {Berlin},
-  booktitle = {Mustererkennung 2000}
-}
-@article{Sander2003,
-  author = {Sander, B. and Golas, M.M. and Stark, H.},
-  title = {Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra},
-  journal = {Journal of Structural Biology},
-  year = {2003},
-  volume = {142},
-  pages = {392-401}
-}
-@misc{Waagepetersen1997,
-  author = {Waagepetersen, R.},
-  title = {Contributions to the Statistical Modeling of Image Data and Spatial Point Processes},
-  year = {1997},
-  howpublished = {www},
-  note = {University of Aarhus}
-}
-@article{Hentschell1983,
-  author = {Hentschell, H.G.E. and Procaccia, I.},
-  title = {The Infinite Number of Generalized Dimensions of Fractals and Strange Attractors},
-  journal = {Physica D},
-  year = {1983},
-  volume = {8},
-  number = {3},
-  pages = {435--444}
-}
-@inproceedings{Croisier1976,
-  author = {Croisier, A. and Esteban, D. and Galand, C.},
-  title = {Perfect Channel Splitting by Use of Interpolation/Decimation/Tree Decomposition Techniques},
-  year = {1976},
-  pages = {443--446},
-  month = {August},
-  address = {Patras, Greece},
-  booktitle = {International Conference on Information Sciences and Systems}
-}
-@article{Barnard1980,
-  author = {Barnard, S.T. and Thompson, W.B.},
-  title = {Disparity Analysis of Images},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1980},
-  volume = {2},
-  number = {4},
-  pages = {527--534},
-  month = {July}
-}
-@article{Desolneux2001,
-  author = {Desolneux, A. and Moisan, L. and Morel, J.-M.},
-  title = {Edge Detection by {Helmholtz} Principle},
-  journal = {Journal of Mathematical Imaging and Vision},
-  year = {2001},
-  volume = {14},
-  pages = {271--284}
-}
-@phdthesis{Picka1996,
-  author = {Picka, J.D.},
-  title = {Variance-Reducing Modifications for Estimators of Dependence in Random Sets},
-  year = {1996},
-  month = {December},
-  address = {Chicago, USA},
-  school = {University of Chicago}
-}
-@inproceedings{Dijk2003,
-  author = {Dijk, J. and Ginkel, M. van and Asselt, R.J. van and Vliet, L.J. van and Verbeek, P.W.},
-  title = {A new sharpness measure based on Gaussian lines and edges},
-  year = {2003},
-  volume = {2756},
-  pages = {149-156},
-  month = {Aug 25-27},
-  editor = {Petkov, N. and Westenberg, M.A.},
-  publisher = {Springer},
-  series = {Lecture Notes in Computer Science},
-  address = {Berlin},
-  booktitle = {CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands)}
-}
-@inproceedings{Dijk2002,
-  author = {Dijk, J. and Ginkel, M. van and Asselt, R.J. van and Vliet, L.J. van and Verbeek, P.W.},
-  title = {A new sharpness measure based on Gaussian lines and edges},
-  year = {2002},
-  pages = {39--44},
-  month = {June 19-21},
-  editor = {Deprettere, E.F. and Belloum, A. and Heijnsdijk, J.W.J. and Stappen, F. van der},
-  publisher = {ASCI},
-  address = {Delft},
-  booktitle = {Proc. ASCI 2002, 8th Annual Conf. of the Advanced School for Computing and Imaging}
-}
-@article{Bruijne2003,
-  author = {Bruijne, M. de and Niessen, W.J. and Maintz, J.B.A. and Viergever, M.A.},
-  title = {Localization and segmentation of aortic endografts using marker detection},
-  journal = {IEEE Transactions on Medical Imaging},
-  year = {2003},
-  volume = {22},
-  pages = {473-482}
-}
-@article{Rader1968,
-  author = {Rader, C.M.},
-  title = {Discrete {Fourier} Transforms When the Number of Data Samples is Prime},
-  journal = {Proceedings of the IEEE},
-  year = {1968},
-  volume = {56},
-  number = {6},
-  pages = {1107--1108},
-  month = {June},
-  annote = {key_fft}
-}
-@phdthesis{Robbins1996,
-  author = {Robbins, B.J.},
-  title = {The Detection of {2D} Image Features using Local Energy},
-  year = {1996},
-  month = {August},
-  address = {Australia},
-  school = {University of Western Australia}
-}
-@article{Ando2004,
-  author = {Ando, R. and Muzuno, H. and Miyawaki, A.},
-  title = {Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting},
-  journal = {Science},
-  year = {2004},
-  volume = {306},
-  pages = {1370-1373}
-}
-@article{Robbins1997,
-  author = {Robbins, B. and Owens, R.},
-  title = {{2D} Feature Detection via Local Energy},
-  journal = {Image and Vision Computing},
-  year = {1997},
-  volume = {15},
-  number = {5},
-  pages = {353--368}
-}
-@article{Stokke1990,
-  author = {Stokke, B.T. and Brant, D.A.},
-  title = {The reliability of wormlike polysaccharides chain dimensions estimated from electron micrographs},
-  journal = {Biopolymers},
-  year = {1990},
-  volume = {30},
-  number = {13},
-  pages = {1161-1181}
-}
-@article{Ando2000,
-  author = {Ando, S.},
-  title = {Consistent Gradient Operators},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {2000},
-  volume = {22},
-  number = {3},
-  pages = {252--265},
-  month = {March}
-}
-@techreport{Cullip1990,
-  author = {Cullip, T.J. and Fredericksen, R.E. and Gauch, J.M. and Pizer, S.M.},
-  title = {Algorithms for 2D and 3D Image Description Based on the IAS},
-  year = {1990},
-  institution = {University of North Carolina, U.S.A.},
-  note = {TR90-034}
-}
-@article{Dempster1977,
-  author = {Demster, A.P. and Laird, N.M. and Rubin, D.B.},
-  title = {Maximum Likelihood from Incomplete Data via the {EM} algorithm},
-  journal = {Journal of the Royal Statistical Society B},
-  year = {1977},
-  volume = {39},
-  pages = {1--37}
-}
-@article{Marshall1997,
-  author = {Marshall, W.F. and Straight, A. and Marko, J.F. and Swedlow, J. and Dernburg, A. and Murray, A.W. and Agard, D.A. and Sedat, J.W.},
-  title = {Interphase chromosomes undergo constrained diffusional motion in living cells},
-  journal = {Current Biology},
-  year = {1998},
-  volume = {7},
-  number = {12},
-  pages = {930-939}
-}
-@inproceedings{Borga1997,
-  author = {Borga, M. and Knutsson, H. and Landelius, T.},
-  title = {Learning Canonical Correlations},
-  year = {1997},
-  volume = {I},
-  pages = {1--8},
-  month = {June 9-11},
-  booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)}
-}
-@article{Perona1998,
-  author = {Perona, P.},
-  title = {Orientation Diffusions},
-  journal = {IEEE Transactions on Image Processing},
-  year = {1998},
-  volume = {7},
-  number = {3},
-  pages = {457--467},
-  month = {March}
-}
-@phdthesis{Borga1998,
-  author = {Borga, M.},
-  title = {Learning Multidimensional Signal Processing},
-  year = {1998},
-  address = {{Link\"oping, Sweden}},
-  school = {{Link\"oping University}}
-}
-@article{Perona1990,
-  author = {Perona, P. and Malik, J.},
-  title = {Scale-Space and Edge Detection Using Anisotropic Diffusion},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1990},
-  volume = {12},
-  number = {7},
-  pages = {629--639},
-  month = {July}
-}
-@inproceedings{Wink2001,
-  author = {Wink, O. and Niessen, W.J. and Verdonck, B. and Viergever, M.A.},
-  title = {Vessel Axis Determination Using Wave Front Propagation Analysis},
-  year = {2001},
-  pages = {845-853},
-  editor = {Niessen, W. and Viergever, M.A.},
-  booktitle = {MICCAI'01}
-}
-@article{Perona1995,
-  author = {Perona, P.},
-  title = {Deformable Models for Early Vision},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1995},
-  volume = {17},
-  number = {5},
-  pages = {488--499},
-  month = {May}
-}
-@book{Gauss1801,
-  author = {Gauss, C.F.},
-  title = {Disquisitiones Arithmeticae},
-  year = {1801},
-  publisher = {{K\"oniglichen Gesellschaft der Wissenschaft}},
-  address = {{G\"ottingen} }
-}
-@article{Dirks2003,
-  author = {Dirks, R.W. and Molenaar, C. and Tanke, H.J.},
-  title = {Visualizing {RNA} molecules inside the nucleus of living cells},
-  journal = {Methods},
-  year = {2003},
-  volume = {29},
-  number = {1},
-  pages = {51-57}
-}
-@article{Dirks2001,
-  author = {Dirks, R.W. and Molenaar, R.W. and Tanke, H.J.},
-  title = {Methods for visualizing RNA processing and transport pathways in living cells},
-  journal = {Histochemistry and Cell Biology},
-  year = {2001},
-  volume = {115},
-  number = {1},
-  pages = {3-11}
-}
-@article{Bangham1994,
-  author = {Bangham, J.A. and Campbell, T.G. and Aldridge, R.V.},
-  title = {Multiscale Median and Morphological Filters for 2D Pattern Recognition},
-  journal = {Signal Processing},
-  year = {1994},
-  volume = {38},
-  number = {3},
-  pages = {387--415}
-}
-@book{HandbookCP1992,
-  title = {Handbook of Chemistry and Physics },
-  year = {1992},
-  editor = {Lide, D.R. },
-  publisher = {CRC Press },
-  edition = {82th}
-}
-@article{Bangham1996,
-  author = {Bangham, J.A. and Chardaire, P. and Pye, C.J. and Ling, P.D.},
-  title = {Multiscale Nonlinear Decomposition: The Sieve Decomposition Theorem},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1996},
-  volume = {18},
-  number = {5},
-  pages = {529--539},
-  month = {May}
-}
-@article{Clerc2002,
-  author = {Clerc, M. and Mallat, S.},
-  title = {The Texture Gradient Equation for Recovering Shape from Texture},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {2002},
-  volume = {24},
-  number = {4},
-  pages = {536--549},
-  month = {April}
-}
-@article{Dijkstra1959,
-  author = {Dijkstra, E.W.},
-  title = {A note on two problems in connexion with graphs.},
-  journal = {Numerische Mathematik },
-  year = {1959},
-  volume = {1},
-  pages = {269--271}
-}
-@article{Andrey1998,
-  author = {Andrey, P. and Tarroux, P.},
-  title = {Unsupervised Segmentation of {M}arkov Random Field Modeled Textured Images Using Selectionist Relaxation},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1998},
-  volume = {20},
-  number = {3},
-  pages = {252--262},
-  month = {March}
-}
-@article{Hestenes1994,
-  author = {Hestenes, D.},
-  title = {Invariant Body Kinematics: {I}. Saccadic and Compensatory Eye Movements},
-  journal = {Neural Networks},
-  year = {1994},
-  volume = {7},
-  number = {1},
-  pages = {65--77}
-}
-@article{Osher1988,
-  author = {Osher, S. and Sethian, J.A.},
-  title = {Fronts Propagating with Curvature-Dependent Speed: Algorithms Based on {H}amilton-{J}acobi Formulations},
-  journal = {Journal of Computational Physics},
-  year = {1988},
-  volume = {79},
-  pages = {12--49}
-}
-@article{Ram2006,
-  author = {Ram, S. and Ward, E.S. and Ober, R.J.},
-  title = {Beyond {Rayleighs} criterion: {A} resolution measure with application to single-molecule microscopy},
-  journal = {Proceedings of the National Academy of Sciences USA},
-  year = {2006},
-  volume = {103},
-  number = {12},
-  pages = {4457-4462}
-}
-@article{Schwertner2004a,
-  author = {Schwertner, M. and Booth, M.J. and Neil, M.A.A. and Wilson, T.},
-  title = {Measurement of specimen induced aberrations of biological samples using phase stepping interferometry},
-  journal = {Journal of Microscopy},
-  year = {2004},
-  volume = {213},
-  number = {1},
-  pages = {11-19}
-}
-@article{Schwertner2004b,
-  author = {Schwertner, M. and Booth, M.J. and Wilson, T.},
-  title = {Simulation of specimen-induced aberrations for objects with spherical and cylindrical symmetry},
-  journal = {Journal of Microscopy},
-  year = {2004},
-  volume = {215},
-  number = {3},
-  pages = {271-280}
-}
-@article{Simoncelli1992,
-  author = {Simoncelli, E.P. and Freeman, W.T. and Adelson, E.H. and Heeger, D.J.},
-  title = {Shiftable Multi-scale Transforms},
-  journal = {IEEE Transactions on Information Theory},
-  year = {1992},
-  volume = {38},
-  number = {2},
-  pages = {587--607},
-  month = {March}
-}
-@article{Simoncelli1996,
-  author = {Simoncelli, E.P. and Farid, H.},
-  title = {Steerable wedge filters for local orientation analysis},
-  journal = {IEEE Transactions on Image Processing},
-  year = {1996},
-  volume = {5},
-  number = {9},
-  pages = {1377--1382}
-}
-@article{Viero1995,
-  author = {Viero, T. and Jeulin, D.},
-  title = {Morphological Extraction of Line Networks from Noisy Low-Contrast Images},
-  journal = {Journal of Visual Communication and Image Representation},
-  year = {1995},
-  volume = {6},
-  number = {4},
-  pages = {335--347},
-  month = {December}
-}
-@article{Simoncelli1990,
-  author = {Simoncelli, E.P. and Adelson, E.H.},
-  title = {Non-Separable Extensions of Quadrature Mirror Filters to Multiple Dimensions},
-  journal = {Proceedings of the IEEE},
-  year = {1990},
-  volume = {78},
-  number = {4},
-  pages = {652--664},
-  month = {April}
-}
-@inproceedings{Luengo2001b,
-  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
-  title = {A Rotation-Invariant Morphology for Shape Analysis of Anisotropic Objects and Structures},
-  year = {2001},
-  volume = {2059},
-  pages = {378--387},
-  editor = {Arcelli, C. and Cordella, L.P. and Sanniti, G. di Baja},
-  publisher = {Springer-Verlag},
-  series = {Lecture Notes on Computer Science},
-  address = {Capri, Italy},
-  booktitle = {Proc. 4th International Workshop on Visual Form}
-}
-@inproceedings{Luengo2001a,
-  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
-  title = {Segmentation-Free Estimation of Length Distributions Using Sieves and RIA Morphology},
-  year = {2001},
-  pages = {129--136},
-  publisher = {ASCI, Delft},
-  address = {Heijen, the Netherlands},
-  booktitle = {Proc. 7th Annual Conference of the Advanced School for Computing and Imaging}
-}
-@article{Khotanzad1990,
-  author = {Khotanzad, A. and Hong, Y.H.},
-  title = {Invariant Image Recognition by {Z}ernike Moments},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1990},
-  volume = {12},
-  number = {5},
-  pages = {489--497},
-  month = {May}
-}
-@article{Lindenbaum1993,
-  author = {Lindenbaum, M. and Fischer, M. and Bruckstein, A.},
-  title = {On {G}abor's contribution to image enhancement},
-  journal = {Pattern Recognition},
-  year = {1993},
-  volume = {27},
-  number = {1},
-  pages = {1--8}
-}
-@article{Rose2002,
-  author = {Rose, H.},
-  title = {Theory of electron-optical achromats and apochromats},
-  journal = {Ultramicroscopy},
-  year = {2002},
-  volume = {93},
-  pages = {293-303}
-}
-@inproceedings{Hertzmann2001,
-  author = {Hertzmann, A. and Jacobs, C.E. and Oliver, N. and Curless, B. and Salesin, D.H.},
-  title = {Image Analogies},
-  year = {2001},
-  pages = {327--340},
-  publisher = {ACM Press},
-  booktitle = {{SIGGRAPH}, Computer Graphics Proceedings}
-}
-@article{Rose2005,
-  author = {Rose, H.},
-  title = {Prospects for aberration-free electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {2005},
-  volume = {103},
-  pages = {1-6}
-}
-@article{Rioul1991,
-  author = {Rioul, O. and Vetterli, M.},
-  title = {Wavelets and Signal Processing},
-  journal = {IEEE Signal Processing Magazine},
-  year = {1991},
-  pages = {14--38},
-  month = {October}
-}
-@article{Torok1995,
-  author = {{T\"or\"ok}, P. and Varga, P. and Laczik, Z. and Booker, G.R. },
-  title = {Electromagnetic diffraction of light focused through a planar interface between materials of mismatched refractive indices: an integral representation},
-  journal = {Journal of the Optical Society of America A},
-  year = {1995},
-  volume = {12},
-  number = {2},
-  pages = {325-332}
-}
-@article{Acton2001,
-  author = {Acton, S.T.},
-  title = {Fast Algorithms for Area Morphology},
-  journal = {Digital Signal Processing},
-  year = {2001},
-  volume = {11},
-  pages = {187--203}
-}
-@article{Acton2000,
-  author = {Acton, Scott T. and Mukherjee, Dipti Prasad},
-  title = {Scale Space Classification Using Area Morphology},
-  journal = {IEEE Transactions on Image Processing},
-  year = {2000},
-  volume = {9},
-  number = {4},
-  pages = {623--635},
-  month = {April}
-}
-@article{Vonck2000,
-  author = {Vonck, J.},
-  title = {Parameters a?ecting specimen flatness of two-dimensional crystals for electron crystallography},
-  journal = {Ultramicroscopy},
-  year = {2000},
-  volume = {85},
-  pages = {123-129}
-}
-@book{Bishop1998,
-  author = {Bishop, C.M.},
-  title = {Neural Networks for Pattern Recognition},
-  year = {1998},
-  publisher = {Oxford University Press},
-  address = {New York}
-}
-@book{Bishop1995,
-  author = {Bishop, C.M.},
-  title = {Neural Networks for Pattern Recognition},
-  year = {1995},
-  publisher = {Oxford University Press}
-}
-@misc{Hough1962,
-  author = {Hough, P.V.C.},
-  title = {Method and Means for Recognizing Complex Patterns},
-  year = {1962},
-  howpublished = {US misc nr. 3069654}
-}
-@article{Clayton2004,
-  author = {Clayton, A.H.A. and Hanley, Q.S. and Verveer, P.J.},
-  title = {Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data},
-  journal = {Journal of Microscopy},
-  year = {2004},
-  volume = {213},
-  pages = {1-5}
-}
-@article{Maintz1996kort,
-  author = {Maintz, J.B.A. and Elsen, P.A. van den and Viergever, M.A. },
-  title = {Evaluation of ridge seeking operators for multimodality medical image matching },
-  journal = {PAMI},
-  year = {1996},
-  volume = {18},
-  number = {4},
-  pages = {353--365}
-}
-@phdthesis{SMALLSMALLGinkel2002,
-  author = {Ginkel, M. van},
-  title = {Image Analysis using Orientation Space based on Steerable Filters},
-  year = {2002},
-  address = {Delft, The Netherlands},
-  school = {Delft University of Technology}
-}
-@misc{Stereology2000,
-  title = {Summer School on Stereology and Geometric Tomography},
-  year = {2000},
-  month = {20-25 May},
-  howpublished = {www},
-  note = {Sandberg Manor, Denmark}
-}
-@article{Clayton2002,
-  author = {Clayton, A.H.A. and Hanley, Q.S. and Arndt-Jovin, D.J. and Subramaniam, V. and Jovin, T.M.},
-  title = {Dynamic Fluorescence Anisotropy Imaging Microscopy in the Frequency Domain {(rFLIM)}},
-  journal = {Biophysical Journal},
-  year = {2002},
-  volume = {83},
-  number = {3},
-  pages = {1631-1649}
-}
-@article{Desolneux2002,
-  author = {Desolneux, A. and Ladjal, S. and Moisan, L. and Morel, J.-M.},
-  title = {Dequantizing image orientation},
-  journal = {IEEE Transactions on Image Processing},
-  year = {2002},
-  volume = {11},
-  number = {10},
-  pages = {1129--1140}
-}
-@inproceedings{Bigun1987,
-  author = {{Big\"un}, J. and Granlund, G.H.},
-  title = {Optimal orientation detection of linear symmetry},
-  year = {1987},
-  pages = {433-438},
-  month = {June 8-11},
-  publisher = {IEEE Computer Society Press},
-  address = {London},
-  booktitle = {Proceedings of the first IEEE International Conference on Computer Vision}
-}
-@techreport{Bigun1986,
-  author = {{Big\"un}, J.},
-  title = {Circular Symmetry Models in Image Processing.},
-  number = {LIU-TEK-LIC-1986:25},
-  address = {{Link\"oping University}, Sweden},
-  institution = {Computer Vision Laboratory},
-  type = {Lic. Thesis},
-  note = {Thesis No. 85}
-}
-@article{Bowie1977a,
-  author = {Bowie, J.E. and Young, I.T.},
-  title = {An Analysis Technique for Biological Shape -- {III}},
-  journal = {Acta Cytologica},
-  year = {1977},
-  volume = {21},
-  number = {6},
-  pages = {739--746}
-}
-@article{Glossop1999,
-  author = {Glossop, K. and Lisboa, P.J.G. and Russell, P.C. and Siddans, A. and Jones, G.R.},
-  title = {An implementation of the Hough Transformation for the Identification and Labeling of Fixed Period Sinusoidal Curves},
-  journal = {Computer Vision and Image Understanding},
-  year = {1999},
-  volume = {74},
-  number = {1},
-  pages = {96--100},
-  month = {April},
-  annote = {key_radon}
-}
-@article{Crowley1984,
-  author = {Crowley, J.L. and Parker, A.C.},
-  title = {A Representation for Shape Based on Peaks and Ridges in the Difference of Low-Pass Transform},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1984},
-  volume = {6},
-  number = {2},
-  pages = {156--170},
-  month = {March}
-}
-@inproceedings{Kraaijveld2000,
-  author = {Kraaijveld, M.A. and Epping, W.J.M.},
-  title = {Harnessing Advanced Image Analysis Technology for Quantitative Core and Borehole Image Interpretation},
-  year = {2000},
-  pages = {paper VV},
-  month = {June 4-7},
-  booktitle = {proceedings of the 41st SPWLA annual symposium, Dallas}
-}
-@article{Joanicot1987,
-  author = {Joanicot, M. and Revet, B.},
-  title = {{DNA} conformational studies from electron microscopy. {I. Excluded} volume effect and structure dimensionality},
-  journal = {Biopolymers},
-  year = {1987},
-  volume = {26},
-  number = {2},
-  pages = {315-326}
-}
-@article{Brown2003,
-  author = {Brown, M.Z. and Burschka, D. and Hager, G.D.},
-  title = {Advances in Computational Stereo},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {2003},
-  volume = {25},
-  number = {8},
-  pages = {993--1007},
-  month = {August}
-}
-@article{Typke2004,
-  author = {Typke, D. and Duwning, K.H. and Glaeser, R.M.},
-  title = {Electron Microscopy of Biological Macromolecules: Bridging the GAp between What Physics Allows and What We Currently Can Get},
-  journal = {Microscopy and Microanalysis},
-  year = {2004},
-  volume = {10},
-  pages = {21-27}
-}
-@book{Simmonds1982,
-  author = {Simmonds, J.G.},
-  title = {A Brief on Tensor Analysis},
-  year = {1982},
-  publisher = {Springer-Verlag}
-}
-@article{Li2004,
-  author = {Li, W. and Leung, W.},
-  title = {A maximum likelihood approach for image registration using control point and intensity},
-  journal = {IEEE Transactions on Image Processing},
-  year = {2004},
-  volume = {13},
-  number = {8},
-  pages = {1115-1127}
-}
-@book{Cressie1993,
-  author = {Cressie, N.A.C.},
-  title = {Statistics for Spatial Data},
-  year = {1993},
-  publisher = {John Wiley \& Sons, inc},
-  edition = {Revised}
-}
-@article{McLaughlin1998,
-  author = {McLaughlin, R.A. and Alder, M.D.},
-  title = {The Hough Transform Versus the Upwrite},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1998},
-  volume = {20},
-  number = {4},
-  pages = {396--400},
-  month = {April},
-  annote = {key_radon}
-}
-@inproceedings{Rieger2003b,
-  author = {Rieger, B. and Vliet, L.J. van},
-  title = {Representing Orientation in n-Dimensional Spaces},
-  year = {2003},
-  pages = {17-24},
-  month = {August 25-27 },
-  editor = {Petkov, N. and Westenberg, M.A.},
-  publisher = {Springer Verlag},
-  series = {LNCS 2756},
-  address = {Berlin},
-  booktitle = {CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands) }
-}
-@article{Rieger2003c,
-  author = {Rieger, B. and Doel, L.R. van den and Vliet, L.J. van },
-  title = {Ring Formation in Nanoliter Cups: Quantitative Measurements of Flow in Micromachined Wells},
-  journal = {Physical Review E},
-  year = {2003},
-  volume = {68},
-  number = {3},
-  pages = {036312}
-}
-@inproceedings{Rieger2003a,
-  author = {Rieger, B. and Molenaar, C. and Dirks, R.W. and Vliet, L.J. van},
-  title = {Affine correction without correspondence applied to 4D cellular motion in confocal microscopy},
-  year = {2003},
-  month = {June 4-6},
-  editor = {Vassiliadis, S. and Florak, L.M.J. and Heijnsdijk, J.W.J and Steen, A. van den},
-  booktitle = {ASCI'03, Proceedings of the 9th Annual Conference of the Advanced School for Computing and Imaging (Lommel, Belgium) }
-}
-@article{Grayson1987,
-  author = {Grayson, M.},
-  title = {The heat equation shrinks embedded plane curves to round points},
-  journal = {Journal of Differential Geometry},
-  year = {1987},
-  volume = {26},
-  pages = {285--314}
-}
-@article{Danielsson1990,
-  author = {Danielsson, P.-E. and Seger, O.},
-  title = {Rotation Invariance in Gradient and Higher Order Derivative Detectors},
-  journal = {Computer Vision, Graphics, and Image Processing},
-  year = {1990},
-  volume = {49},
-  number = {2},
-  pages = {198--221}
-}
-@article{Hanley2001,
-  author = {Hanley, Q.S. and Subramaniam, V. and Arndt-Jovin, D.J. and Jovin, T.M.},
-  title = {Fluorescence Lifetime Imaging: Multi-point Calibration, Minimum Resolvable Differences, and Artifact Suppression},
-  journal = {Cytometry},
-  year = {2001},
-  volume = {43},
-  pages = {248-260}
-}
-@article{Hanley2002,
-  author = {Hanley, Q.S. and Ardent-Jovin, D.J. and Jovin, T.M.},
-  title = {Spectrally resolved fluorescence lifetime imaging microscopy},
-  journal = {Applied Spectroscopy},
-  year = {2002},
-  number = {56},
-  pages = {155-166}
-}
-@article{Saffman1975,
-  author = {Saffman, P.G. and {Delbr\"uck}, M.},
-  title = {Brownian motion in biolocial membranes},
-  journal = {Proc. Nat. Acad. Sci. USA},
-  year = {1975},
-  volume = {72},
-  number = {8},
-  pages = {3111-3113}
-}
-@article{Casadio1999,
-  author = {Casadio Tarabusi, E. and Cohen, J.M. and Colonna, F.},
-  title = {Characterization of the Range of the {Radon} Transform on Homogeneous Trees},
-  journal = {Electronic Research Announcements of the American Mathematical Society},
-  year = {1999},
-  volume = {5},
-  pages = {11--17},
-  month = {February}
-}
-@article{Goldberg1991a,
-  author = {Goldberg, D.},
-  title = {What Every Computer Scientist Should Know about Floating-Point Arithmetic},
-  journal = {ACM Computing Surveys},
-  year = {1991},
-  volume = {23},
-  number = {1},
-  pages = {5--48},
-  note = {A reprint. Extended?}
-}
-@article{Willert1991,
-  author = {Willert, C.E. and Gharib, M.},
-  title = {Digital particle image velocimetry},
-  journal = {Experiments in Fluids},
-  year = {1991},
-  volume = {10},
-  pages = {181-193}
-}
-@article{Soille2001,
-  author = {Soille, Pierre and Talbot, Hugues},
-  title = {Directional Morphological Filtering},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {2001},
-  volume = {23},
-  number = {11},
-  pages = {1313--1329},
-  month = {November}
-}
-@article{Soille2002,
-  author = {Soille, P.},
-  title = {Short Survey on Morphological Operators Based on Rank Filters},
-  journal = {Pattern Recognition},
-  year = {2002},
-  volume = {35},
-  pages = {527-535}
-}
-@book{Landau1999,
-  author = {Landau, L.D. and Lifshitz, E.M.},
-  title = {Statistical Physics, Part 1},
-  year = {1999},
-  publisher = {Butterworth-Heinemann},
-  edition = {third}
-}
-@article{Rintoul1997,
-  author = {Rintoul, M.D. and Torquato, S.},
-  title = {Precise determination of the critical threshold and exponents in a three-dimensional continuum percolation model},
-  journal = {J. Phys. A: Math Gen},
-  year = {1997},
-  volume = {30},
-  pages = {585--592}
-}
-@article{Belongie2002,
-  author = {Belongie, S. and Malik, J. and Puzicha, J.},
-  title = {Shape Matching and Object Recognition Using Shape Contexts},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {2002},
-  volume = {24},
-  number = {4},
-  pages = {509--522},
-  month = {April}
-}
-@phdthesis{Reinders2001,
-  author = {Reinders, F.},
-  title = {Feature-Based Visualization of Time-Dependent Data},
-  year = {2001},
-  address = {The Netherlands},
-  school = {Delft University of Technology}
-}
-@article{Deans1981,
-  author = {Deans, S.R.},
-  title = {{H}ough Transform from the {R}adon Transform},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1981},
-  volume = {3},
-  number = {2},
-  pages = {185--188},
-  month = {March},
-  annote = {key_radon}
-}
-@article{Meijering2003,
-  author = {Meijering, E. and Unser, M.},
-  title = {A Note on Cubic Convolution Interpolation},
-  journal = {IEEE Transactions on Image Processing},
-  year = {2003},
-  volume = {12},
-  number = {4},
-  pages = {477--479},
-  month = {April}
-}
-@article{Meijering2002,
-  author = {Meijering, E.},
-  title = {A Chronology of Interpolation: From Ancient Astronomy to Modern Signal and Image Processing},
-  journal = {Proceedings of the IEEE},
-  year = {2002},
-  volume = {90},
-  number = {3},
-  pages = {319--342},
-  month = {March}
-}
-@incollection{Jovin1989,
-  author = {Jovin, T.M. and Arndt-Jovin, D.J.},
-  title = {{FRET} Microscopy: Digital Imaging of Fluorescence Resonance Energy Transfer. Application in Cell Biology},
-  year = {1989},
-  pages = {99-117},
-  editor = {Kohen, E.},
-  publisher = {Academic Press},
-  address = {New York},
-  booktitle = {Cell Structure and Function by Microspectrofluorometry}
-}
-@article{Egner2004,
-  author = {Egner, A. and Verrier, S. and Goroshkov, A. and S?ing, H-D. and Hell, S.W.},
-  title = {{4Pi}-microscopy of the {Golgi} apparatus in live mammalian cells},
-  journal = {Journal of Structural Biology},
-  year = {2004},
-  volume = {147},
-  number = {1},
-  pages = {70-76}
-}
-@article{Dorst1987,
-  author = {Dorst, L. and Smeulders, A.W.M.},
-  title = {Length Estimators for Digitized Contours},
-  journal = {Computer Vision, Graphics and Image Processing},
-  year = {1987},
-  volume = {40},
-  pages = {311--333}
-}
-@article{Dorst1986,
-  author = {Dorst, L. and Smeulders, A.W.M.},
-  title = {Best Linear Unbiased Estimators for Properties of Digitized Straight Lines},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1986},
-  volume = {8},
-  number = {2},
-  pages = {276--282},
-  month = {March}
-}
-@incollection{Olver1994,
-  author = {Olver, P. and Sapiro, G. and Tannenbaum, A.},
-  title = {Differential invariant signatures and flows in computer vision: a symmetry group approach},
-  year = {1994},
-  pages = {255--306},
-  editor = {Ter Haar Romeny B.M.},
-  publisher = {Kluwer Academic Publishers},
-  chapter = {11},
-  booktitle = {Geometry-driven diffusion in computer vision}
-}
-@techreport{Dorst1980,
-  author = {Dorst, L.},
-  title = {A Coordinate System for the Crystal Ball},
-  year = {1980},
-  institution = {CERN}
-}
-@article{Hoyer2002,
-  author = {Hoyer, W. and Antony, T. and Cherny, D.I. and Heim, G. and Jovin, T.M. and Subramaniam, V.},
-  title = {Dependence of $\alpha$-synuclein aggregate morphology on solution conditions},
-  journal = {Journal of Molecular Biology},
-  year = {2002},
-  volume = {322},
-  number = {2},
-  pages = {383-393}
-}
-@inproceedings{Ginneken1999,
-  author = {Ginneken, B. van and Haar Romeny, B. M. ter},
-  title = {Applications of Locally Orderless Images},
-  volume = {1682},
-  pages = {10--21},
-  editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
-  publisher = {Springer-Verlag},
-  series = {Lecture Notes on Computer Science},
-  booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)}
-}
-@article{Mitiche1988,
-  author = {Mitiche, A. and Grisell, R. and Aggarwal, J.K.},
-  title = {On smoothness of a vector field-application to optical flow},
-  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
-  year = {1988},
-  volume = {10},
-  number = {6},
-  pages = {943--949}
-}
-@article{Cognet1999,
-  author = {Cognet, J.A.H. and Pakleza, C. and Cherny, D.I. and Delain, E. and Cam, E. le},
-  title = {Static curvature and flexibility measurements of {DNA} with microscopy. {A} simple renormalization method, its assessment by experiment and simulation},
-  journal = {Journal of Molecular Biology},
-  year = {1999},
-  volume = {285},
-  number = {3},
-  pages = {997-1009}
-}
-@article{Segall2006,
-  author = {Segall, D.E. and Nelson, P.C. and Phillips, R.},
-  title = {Volume-Exclusion Effects in Tethered-Particle Experiments: Bead Size Matters},
-  journal = {Physical Review Letters},
-  year = {2006},
-  volume = {96},
-  pages = {088306}
-}
-@article{Krieger1996,
-  author = {Krieger, G. and Zetzsche, C.},
-  title = {Nonlinear Image Operators for the Evaluation of Local Intrinsic Dimensionality},
-  journal = {IEEE Transactions on Image Processing},
-  year = {1996},
-  volume = {5},
-  number = {6},
-  pages = {1026--1042},
-  month = {June}
-}
-@book{Rudin1991,
-  author = {Rudin, W.},
-  title = {Functional Analysis},
-  year = {1991, 1973},
-  publisher = {McGraw-Hill},
-  edition = {second}
-}
-@article{Mattfeldt2000a,
-  author = {Mattfeldt, T. and Stoyan, D.},
-  title = {Improved Estimation of the Pair Correlation Function of Random Sets},
-  journal = {Journal of Microscopy},
-  year = {2000},
-  volume = {200, Pt 2},
-  pages = {158--173},
-  month = {November}
-}
-@article{Toprak2007,
-  author = {Toprak, E. and Balci, H. and Blehm, B.H. and  Selvin, P.R.},
-  title = {Three-Dimensional Particle Tracking via Bifocal Imaging},
-  journal = {Nano Letter},
-  year = {2007},
-  volume = {7},
-  number = {7},
-  pages = {2043-2045}
-}
-@article{Xu2010,
-  author = {Xu, Q. and Dyck, D. van and Zandbergen, H.W.},
-  title = {From thickness dependent exit waves to projected potential: Thickness derivative approach},
-  journal = {Ultramicroscopy},
-  year = {2010},
-  volume = {110},
-  pages = {535-542}
-}
-@article{Zewail2010,
-  author = {Zewail, A. H. and },
-  title = {Four-Dimensional Electron Microscopy},
-  journal = {Science},
-  year = {2010},
-  volume = {328},
-  pages = {187-193}
-}
-@article{Pertsinidis2010,
-  author = {Pertsinidis, A. and Zhang, Y. and Chu, S.},
-  title = {Subnanometre single-molecule localization, registration and distance measurements},
-  journal = {Nature},
-  year = {2010}
-}
-@article{Okamoto2010,
-  author = {Okamoto, H.},
-  title = {Subnanometre single-molecule localization,
-registration and distance measurements},
-  journal = {Physical Review A},
-  year = {2010},
-  volume = {38},
-  pages = {043807}
-}
-@article{Muller2010,
-  author = {{M\"uller}, C.B. and Enderlein, J.},
-  title = {Image Scanning Microscopy},
-  journal = {Physical Review Letters},
-  year = {2010},
-  volume = {104},
-  pages = {198101}
-}
-@article{Jonge2010,
-  author = {Jonge, N. de and Poirier-Demes, N. and Dermes, H. and Peckys, D.B. and Drouin, D.},
-  title = {Nanometer-resolution electron microscopy through micrometers-thick water layers},
-  journal = {Ultramicroscopy},
-  year = {2010},
-  volume = {110},
-  pages = {1114-1119}
-}
-@article{Kouskousis2010,
-  author = {Kouskousis, B.P. and Embden J. van and Morrish, D. and Russell, S.M. and Gu, M.},
-  title = {Super-resolution imaging and statistical analysis
-of {CdSe/CdS} Core/Shell semiconductor nanocrystals},
-  journal = {Journal of Biophotonics},
-  year = {2010},
-  volume = {3},
-  number = {7},
-  pages = {437-445}
-}
-@article{Stark2001,
-  author = {Stark, H. and Dube, P. and {L\"uhrmann}, R. and Kastner, B.},
-  title = {Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle},
-  journal = {Nature},
-  year = {2001},
-  volume = {409},
-  pages = {539-541}
-}
-@article{Milazzo2010,
-  author = {Milazzo, A-C. and Moldovan, G. and Lanman, J. and Jin, L. and Bouwer, J.C. and Klienfelder, S. and Peltier, S.T. and Ellisman, M.H. and Kirkland, A.I. and Xoung, N.-H.},
-  title = {Characterization of a direct detection device imaging camera for transmission electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {2010},
-  volume = {110},
-  pages = {744-747}
-}
-@article{Lupini2010,
-  author = {Lupini, A.R. and Wang, P. and Nellist, P.D. and Kirkland, A.I. and Pennycook, S.J.},
-  title = {Aberration measurement using the Ronchigram contrast transfer function},
-  journal = {Ultramicroscopy},
-  year = {2010},
-  volume = {110},
-  pages = {891-898}
-}
-@article{Saxton1982,
-  author = {Saxton, W.O and Baumeister, W.},
-  title = {The correlation averaging of a regularly arranged bacterial cell envelope protein},
-  journal = {Journal of Microscopy},
-  year = {1982},
-  volume = {127},
-  number = {2},
-  pages = {127-138}
-}
-@article{Rudnaya2010,
-  author = {Rudnaya, M.E. and Mattheij, R.M.M. and Maubach, J.M.L.},
-  title = {Evaluating sharpness functions for automated scanning
-electron microscopy},
-  journal = {Journal of Microscopy},
-  year = {2010}
-}
-@inproceedings{Brinkers2010,
-  author = {Brinkers, Sanneke and Dietrich, Heidelinde R. C. and Stallinga, Sjoerd and Mes, Jurriaan J. and Young, Ian T. and Rieger, Bernd},
-  title = {Single Molecule Detection Of Tuberculosis Nucleic Acid Using Dark Field Tethered Particle Motion},
-  year = {2010},
-  pages = {1269},
-  month = {April 14-17},
-  address = {Rotterdam, The Netherlands},
-  booktitle = {IEEE International Symposium on Biomedical Imaging}
-}
-@article{Cordes2010,
-  author = {Cordes, T. and Vogelsang, J. and Anaya, M. and Spaguolo, C. and Gietl, A. and Summerer, W. and Herrmann, A. and {M\"ullen}, K. and Tinnefeld, P.},
-  title = {Single-Molecule Redox Blinking of Perylene Diimide
-Derivatives in Water},
-  journal = {Journal of the American Chemical Society},
-  year = {2010}
-}
-@article{Jiang2010,
-  author = {Jiang, L. and Liu, Z. and Georgieva, D. and Kuil, M.E. and Abrahams, J.P.},
-  title = {A novel approximation method of CTF amplitude correction of 3D single particle reconstruction},
-  journal = {Ultramicroscopy},
-  year = {2010}
-}
-@article{Dwyer2010,
-  author = {Dwyer, C.},
-  title = {Simulation of scanning transmission electron microscope images on desktop computers},
-  journal = {Ultramicroscopy},
-  year = {2010},
-  volume = {110},
-  pages = {195-198}
-}
-@article{Tamura2010,
-  author = {Tamrua, K. and Okayama, S. and Shimizu, R.},
-  title = {Third-order spherical aberration correction using multistage self-aligned quadrupole correction-lens systems},
-  journal = {Journal of Electron Microscopy},
-  year = {2010}
-}
-@article{Paik2009,
-  author = {Paik, D.H. and Seol, Y. and Halsey, W.A. and Perkins, T.T.},
-  title = {Integrating a High-Force Optical Trap with Gold Nanoposts and a Robust Gold-DNA Bond},
-  journal = {Nano Letters},
-  year = {2009},
-  volume = {9},
-  number = {8},
-  pages = {2978-2983}
-}
-@article{Oijen1998,
-  author = {Oijen, A.M. van and {K\"ohler}, J. and Schmidt, J. and {M\"uller}, M. and Brakenhoff, G.J.},
-  title = {3-Dimensional super-resolution by spectrally selective imaging},
-  journal = {Chemical Physics Letters},
-  year = {1998},
-  volume = {292},
-  pages = {183-187}
-}
-@article{Marzetta1993,
-  author = {Marzetta, T.L.},
-  title = {A Simple derivation of the constrained multiple parameter Cramer-Rao Bound},
-  journal = {IEEE Transactions on Signal Processing},
-  year = {1993},
-  volume = {41},
-  number = {6},
-  pages = {2247-2249}
-}
-@article{Mortensen2010,
-  author = {Mortensen, K.I. and Churchman, L.S. and Spudich, J.A. and Flyvbjerg},
-  title = {Optimized localization analysis for single-molecule tracking and super-resolution microscopy},
-  journal = {Nature Methods},
-  year = {2010},
-  volume = {7},
-  number = {5},
-  pages = {377-384}
-}
-@article{Chang2010,
-  author = {Chang, W-H. and Chiu, M.T.K. and CHen, C.-Y. and Yen, C.F. and Lin,Y.-C. and Weng, Y.-P. and Chang, J.-C. and Wu, Y.-M. and Cheng, H. and Fu, J. and Tu, I-P.},
-  title = {Zernike Phase Plate Cryoelectron Microscopy
-Facilitates Single Particle Analysis of Unstained
-Asymmetric Protein Complexes},
-  journal = {Structure},
-  year = {2010},
-  volume = {18},
-  pages = {17-27}
-}
-@article{Smith2010,
-  author = {Smith, C.S. and Joseph, N. and Rieger, B. and Lidke, K.A.},
-  title = {Fast, single-molecule localization that achieves theoretically minimum uncertainty},
-  journal = {Nature Methods},
-  year = {2010},
-  volume = {7},
-  number = {5},
-  pages = {373-375}
-}
-@article{Serge2008,
-  author = {Serge, A. and Bertaux, N. and Rigneault, H. and Marguet, D.},
-  title = {Dynamic multiple-target tracing to probe
-spatiotemporal cartography of cell membranes},
-  journal = {Nature Methods},
-  year = {2008},
-  volume = {5},
-  number = {8},
-  pages = {687-694}
-}
-@article{Aguet2005,
-  author = {Aguet, F. and Ville, D. van de and Unser, M.},
-  title = {Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes},
-  journal = {Optics Express},
-  year = {2005},
-  volume = {13},
-  number = {26},
-  pages = {10503-10522}
-}
-@article{Harauz1997,
-  author = {Harauz, G. and Heel, M. van},
-  title = {Exact filters for general geometry three dimensional reconstruction},
-  journal = {Optik},
-  year = {1997},
-  volume = {78},
-  number = {4},
-  pages = {146-156}
-}
-@article{Lingwood2009,
-  author = {Lingwood, D. and Simons, K.},
-  title = {Lipid rafts as a membrane organizing principle},
-  journal = {Science},
-  year = {2009},
-  volume = {327},
-  pages = {46-53}
-}
-@article{Baddeley2010,
-  author = {Baddeley, D. and Cannell, M.B. and Soeller, C.},
-  title = {Visualization of localization microscopy data},
-  journal = {Microscopy and Microanalysis},
-  year = {2010},
-  volume = {16},
-  pages = {64-72}
-}
-@inbook{Krivanek2010,
-  author = {Krivanek, O.L. and Delby, N. and Keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.},
-  title = {Advances in Imaging and Electron Physics},
-  year = {2010},
-  volume = {153},
-  pages = {121-160},
-  publisher = {Elsevier},
-  chapter = {Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy}
-}
-@article{Jaqaman2008,
-  author = {Jaqaman, K. and Loerke, D. and Mettlen, M. and Kuwara, H. and Grinstein, S. and Schmid, S.L. and Danuser, G.},
-  title = {Robust single-particle tracking in live-cell time-lapse sequences},
-  journal = {Nature Methods},
-  year = {2008},
-  volume = {5},
-  number = {8},
-  pages = {695-702}
-}
-@article{Li2010,
-  author = {Li, T. and Kheifets, S. and Medellin, D. and Raizen, M.G.},
-  title = {Measurement of the Instantaneous Velocity of a Brownian Particle},
-  journal = {Science},
-  year = {2010},
-  volume = {328},
-  pages = {1673-1676}
-}
-@article{Kwon2010,
-  author = {Kwon, O.-H. and Zewail, A.H.},
-  title = {4D Electron Tomography},
-  journal = {Science},
-  year = {2010},
-  number = {328},
-  pages = {1668-1673}
-}
-@article{Brinkers2009,
-  author = {Brinkers, S. and Dietrich, H.R.C. and Groote, F.H. de and Young, I.T. and Rieger, B.},
-  title = {The Persistence Length of Double Stranded {DNA} Determined Using Dark Field Tethered Particle Motion},
-  journal = {Journal of Chemical Physics},
-  year = {2009},
-  volume = {130},
-  number = {21},
-  pages = {215105}
-}
-@article{Snijdervanderas2009,
-  author = {Snijder-van As, M.I. and Rieger, B. and Joosten, B. and Figdor, C. and Subramaniam, V. and Kanger, J.S.},
-  title = {A hybrid total internal reflection fluorescence and optical tweezers microscope to study cell adhesion and membrane protein dynamics of single living cells },
-  journal = {Journal of Microscopy},
-  year = {2009},
-  volume = {223},
-  number = {1},
-  pages = {84-92}
-}
-@article{Faas2009,
-  author = {Faas, F.G.A. and Rieger, B. and Vliet, L.J. van and Cherny, D.I.},
-  title = {{DNA} deformations near charged surfaces: electron and atomic force microscopy views},
-  journal = {Biophysical Journal},
-  year = {2009},
-  volume = {97},
-  number = {4},
-  pages = {1148-1157}
-}
-@article{Castaldo2008,
-  author = {Castaldo, V. and  Hagen, C.W. Rieger, B. and Kruit, P.},
-  title = {Sputtering limits versus signal-to-noise limits in the observation of {Sn} balls in a {Ga+} microscope},
-  journal = {Journal of Vacuum Science and Technology B},
-  year = {2008},
-  volume = {26},
-  number = {6},
-  pages = {2107-2115}
-}
-@article{Lidke2010,
-  author = {Lidke, D.S. and Huang, F. and Post, J.N. and Rieger, B. and Thomas, J.L.and Pouyssegur, J. and Jovin, T.M. and Lenormand, P. },
-  title = {ERK nuclear translocation is dimerization-independent but controlled by the rate of phosphorylation},
-  journal = {Journal of Biological Chemistry},
-  year = {2010},
-  volume = {285},
-  pages = {3092-3102}
-}
-@inbook{Hagen2008,
-  author = {Hagen, G.M. and Lidke, K.A. and Rieger, B. and Lidke,  D.S. and Caarls, W. and  Arndt-Jovin, D.J. and Jovin, T.M.},
-  title = {Single Molecule Dynamics in Life Sciences},
-  year = {2008},
-  pages = {117-130},
-  editor = {Yanagida, T. and Ishii, Y.},
-  publisher = {Wiley},
-  chapter = {Dynamics of membrane receptors: single molecule tracking of quantm dot liganded epidermal growth factor}
-}
-@article{Haider2010,
-  author = {Haider, M .and Hartel, P. and {M\"uller}, H. and Uhlemann, S. and Zach, J.},
-  title = {Information Transfer in a TEM Corrected for Spherical
-and Chromatic Aberration},
-  journal = {Microscopy and Microanalysis},
-  year = {2010},
-  volume = {16},
-  pages = {393-408}
-}
-@article{Borgnia2004,
-  author = {Borgnia, M.J. and Shi, D. and Zhang, P. and Milne, J.L.S.},
-  title = {Visualization of $\alpha$-helical features in a density map constructed using 9 molecular images of the {1.8MDa} icosahedral core of pyruvate dehydrogenase},
-  journal = {Journal of Structural Biology},
-  year = {2004},
-  volume = {147},
-  pages = {136-145}
-}
-@article{Dubochet1988,
-  author = {Dubochet, J. and Adrian, M. and Chang, J.-J. and Homo, J.-C. and Lepault, J. and McDowall, A.W.and Schultz, P.},
-  title = {Cryo-electron microscopy of vitrified specimens},
-  journal = {Quarterly Review of Biophysics},
-  year = {1988},
-  volume = {21},
-  pages = {129-228}
-}
-@article{Khursheed2007,
-  author = {Khursheed, A. and Hoang, H.Q.},
-  title = {Redesign of the scanning electron microscope for parallel energy spectral acquisition},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {108},
-  pages = {151-157}
-}
-@article{Arslan2006,
-  author = {Arslan, I. and Tong, J.R. and Midgley, P.A.},
-  title = {Reducing the missing wedge: High-resolution dual axis tomography of inorganic materials},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {106},
-  pages = {944-1000}
-}
-@article{Dierksen1992,
-  author = {Dierksen, K. and Typke, D. and Hegerl, R. and Koster, A.J. and Baumeister, W.},
-  title = {Towards automatic electron tomography},
-  journal = {Ultramicroscopy},
-  year = {1992},
-  volume = {40},
-  pages = {71-87}
-}
-@book{Born1999,
-  author = {Born, M. and Wolf, E.},
-  title = {Principles of Optics},
-  year = {1999},
-  publisher = {Cambridge University Press},
-  edition = {7th}
-}
-@article{Dyck1996,
-  author = {Dyck, D. van and Lichte, H. and Mast, K.D. van der},
-  title = {Sub-{\aa}ngstr{\"o}m structure characterisation: the {Brite-Euram} route towarde one {\AA}ngstr{\"o}m},
-  journal = {Ultramicroscopy},
-  year = {1996},
-  volume = {64},
-  pages = {1-15}
-}
-@article{Billinge2007,
-  author = {Billinge, S.J.L. and Levin, I.},
-  title = {The Problem with Determining Atomic Structure at the Nanoscale},
-  journal = {Science},
-  year = {2007},
-  volume = {316},
-  pages = {561-565}
-}
-@article{Stoeger2008,
-  author = {Stoeger-Pollach, M.},
-  title = {Optical properties and bandgaps from low loss EELS: Pitfalls and solutions},
-  journal = {Micron},
-  year = {2008},
-  volume = {39},
-  pages = {1092-1110}
-}
-@article{Kim1997a,
-  author = {Kim, H.S. and Yu, M.L. and Thomson, M.G.R. and Kratchmer, E. and Chang, T.H.P.},
-  title = {Performance of Zr/O/W Schottky emitters at reduced temperatures},
-  journal = {Journal of Vaccum Science and Technology B},
-  year = {1997},
-  volume = {15},
-  pages = {2284-2288}
-}
-@inproceedings{Mitterbauer2003a,
-  author = {Mitterbauer, C. and Kothleitner, G. and Hofer, F. and Tiemeijer, P.C. and Freitag, B.H. and Zandbergen, H.W.},
-  title = {High energy resolution {EELS} using a monochromoized {200kV TEM}: Comparative investigation of titanum oxides},
-  year = {2003},
-  volume = {9S3},
-  pages = {1-2},
-  booktitle = {Microscoc. Microanal.}
-}
-@article{Gyobu2004,
-  author = {Gyobu, N. and Tani, K. and Hiroaki, Y. and Kamegawa, A. and Mitsuoka, K. and Fujiyoshi, Y.},
-  title = {Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique},
-  journal = {Journal of Structural Biology},
-  year = {2004},
-  volume = {146},
-  pages = {325-333}
-}
-@article{Hebert2003,
-  author = {Hebert, C. and Schattschneider, P.},
-  title = {A proposal for dichroic experiments in the electron microscope},
-  journal = {Ultramicroscopy},
-  year = {2003},
-  volume = {96},
-  pages = {463-468}
-}
-@article{Oshima2010,
-  author = {Oshima, Y. and et al.},
-  title = {Direct imaging of lithium atoms in {$LiV_2O_4$} by spherical aberration-corrected electron microscopy},
-  journal = {Journal of Electron Microscopy},
-  year = {2010},
-  pages = {1-5}
-}
-@article{Ishitani2002,
-  author = {Ishitani, T. and Sato, M.},
-  title = {Contrast-to-gradient method for the evaluation of image resolution in scanning electron microscopy},
-  journal = {Journal of Electron Mircoscopy},
-  year = {2002},
-  volume = {51},
-  number = {6},
-  pages = {369-382}
-}
-@article{Ishitani2005,
-  author = {Ishitani, T. and Kamiya, C. and Sato, M.},
-  title = {Influence of random noise on the contrast-to-gradient image resolution in scanning electron microscopy},
-  journal = {Journal of Electron Mircoscopy},
-  year = {2005},
-  volume = {54},
-  number = {2},
-  pages = {85-97}
-}
-@article{Ishitani2004,
-  author = {Ishitani, T. and Sato, M.},
-  title = {Contrast-to-gradient method for the evaluation of image resolution taking account of random noise in scanning electron microscopy},
-  journal = {Journal of Electron Mircoscopy},
-  year = {2004},
-  volume = {53},
-  number = {3},
-  pages = {245-255}
-}
-@article{Loane1991,
-  author = {Loane, R.F. and Xu, P. and Slicox, J.},
-  title = {Thermal vibrations in convergent-beam electron diffraction},
-  journal = {Acta Crystallography},
-  year = {1991},
-  volume = {A47},
-  pages = {267-278}
-}
-@article{Zaneti2009,
-  author = {Zaneti, G. and Riches, J.D. and Fuller, S.D. and Briggs, J.A.G.},
-  title = {Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging},
-  journal = {Journal of Structural Biology},
-  year = {2009},
-  volume = {168},
-  pages = {305-312}
-}
-@article{Diez2006,
-  author = {Diez, D.C. and Seybert, A. and Frangakis, A.S.},
-  title = {Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis},
-  journal = {Journal of Strcutural Biology},
-  year = {2006},
-  volume = {154},
-  number = {2},
-  pages = {195-205}
-}
-@article{Diez2007,
-  author = {Diez, C.D. and Mueller, H. and Frangakis, A.S.},
-  title = {Implementation and performance evaluation of reconstruction algorithms on graphics processors},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {288-295}
-}
-@article{Barth1996,
-  author = {Barth, J. E. and Kruit, P.},
-  title = {Addition of different contributions to the charged particle probe size},
-  journal = {Optik},
-  year = {1996},
-  volume = {101},
-  pages = {101-109}
-}
-@article{Uchida2010,
-  author = {Uchida, M. and Tonomura, A.},
-  title = {Generation of electron beams carrying orbital angular momentum},
-  journal = {Nature},
-  year = {2010},
-  volume = {464}
-}
-@article{Jacobsen2001,
-  author = {Jacobsen, C. and Wirick, S. and Flynn, G. and Zimba, C.},
-  title = {Soft X-ray spectroscopy from image sequences with sub-100nm spatial resolution},
-  journal = {Journal of Microscopy},
-  year = {2001},
-  volume = {197},
-  number = {2},
-  pages = {173-184}
-}
-@article{Hammel1995,
-  author = {Hammel, M. and Rose, H.},
-  title = {Optimum rotationally symmetric detector configurations for phase-contrast imaging in scanning transmission electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {1995},
-  volume = {58},
-  pages = {403-415}
-}
-@article{Braat2005,
-  author = {Braat, J.J.M. and Dirksen, P. and Janssen, A.J.E.M. and Haver, S. van and Nes, S. van de},
-  title = {Extended {Nijboer-Zernike} approach to aberration and birefringence retrieval in a high-numerical-aperture optical system},
-  journal = {Journal of the Optical Society of America A},
-  year = {2005},
-  volume = {22},
-  number = {12},
-  pages = {2635-26550}
-}
-@article{Swanson2009,
-  author = {Swanson, L.W. and Schwind, G.A.},
-  title = {A review of the cold-field electron cathode},
-  journal = {Advances in Imaging and Electron Physics},
-  year = {2009},
-  volume = {159},
-  pages = {63-100}
-}
-@article{Nakanishi2005,
-  author = {Nakanishi, N. and Kotaka, Y. and Yamazaki, T.},
-  title = {An expanded approach to noise reduction from high-resolution STEM images based on the maximum entropy method},
-  journal = {Ultramicroscopy},
-  year = {2005},
-  note = {accepted}
-}
-@article{Carragher2000,
-  author = {Carragher, B. and Kisseberth, N. and Kriegman, D. and Milligan, R.A. and Potter, C.S. and Pulokas, J. and Reilein, A.},
-  title = {Leginon: an automated system for acquisition of images from vitrecus ice specimens},
-  journal = {Journal of Structural Biology},
-  year = {2000},
-  volume = {132},
-  pages = {33-45}
-}
-@article{Finn2000,
-  author = {Finn, R.D. and Orlova, E.V. and Gowen, B. and Buck, M. and Heel, M. van},
-  title = {Escherichia coli {RNA} polymerase core and holoenzyme structures},
-  journal = {EMBO Journal},
-  year = {2000},
-  volume = {19},
-  number = {24},
-  pages = {6833-6844}
-}
-@article{Rubenstein2007,
-  author = {Rubenstein, J.L.},
-  title = {Structural analysis of membrane protein complexes by single particle electron microscopy},
-  journal = {Methods},
-  year = {2007},
-  volume = {41},
-  pages = {409-416}
-}
-@article{Wang2007,
-  author = {Wang, J. and Li, Q. and Egerton, R.F.},
-  title = {Probing the electronic structure of ZnO nanowires by valence electron energy loss spectroscopy},
-  journal = {Micron},
-  year = {2007},
-  volume = {38},
-  pages = {346-353}
-}
-@article{Wang2004,
-  author = {Wang, Y.Y. and Kawasaki, M. and Bruley, J. and Gribelyuk, M. and Domenicucci, A. and Gaudiello, J.},
-  title = {Off-axis electron holography with a dual-lens imaging system andits usefulness in 2-D potential mapping of semiconductor devices},
-  journal = {Ultramicroscopy},
-  year = {2004},
-  volume = {101},
-  pages = {63-72}
-}
-@article{Wang2008,
-  author = {Wang, J. and Li, Q. and Ronning, C. and Stichtenoth, D. and Muller, S. and Tang, D.},
-  title = {Nanomaterial electronic structure investigation by valence electron energy loss spectroscopy - An example of doped ZnO nanowires},
-  journal = {Micron},
-  year = {2008},
-  volume = {39},
-  pages = {703-708}
-}
-@article{Okayama2005,
-  author = {Okayama, S. and Haraichi, S. and Matsuhata, H.},
-  title = {Reference sample for the evaluation of {SEM} image resolution at a high magnification - nanometer-scale {Au} particles on an {HOPG} substrate},
-  journal = {Journal of Electron Mircoscopy},
-  year = {2005},
-  volume = {54},
-  number = {4},
-  pages = {345-350}
-}
-@book{Slayter1992,
-  author = {Slayter,E.M. and Slayter, H.S.},
-  title = {Ligth and Electron Microscopy},
-  year = {1992},
-  publisher = {Cambridge University Press},
-  address = {Cambridge, United Kingdom}
-}
-@article{Ortalan2009,
-  author = {Ortalan, V. and Herra, M. and Morgan, D.G. and Browning, N.D.},
-  title = {Application of image processing to STEM tomography of low-contrast materials},
-  journal = {Ultramicroscopy},
-  year = {2009},
-  volume = {110},
-  pages = {67-81}
-}
-@article{Lazar2010,
-  author = {Lazar, S. and Shao, Y. and Gunawan, L. and Nechache, R. and Pignolet, A. and Botton, G.A.},
-  title = {Imaging, Core-Loss, and Low-Loss Electron-Energy-Loss Spectroscopy Mapping in Aberration-Corrected STEM},
-  journal = {Microscopy and Microanalysis},
-  year = {2010},
-  volume = {16},
-  pages = {1-9}
-}
-@article{Takaoka2006,
-  author = {Takaoka, A. and Hasegawa, T.},
-  title = {Observations of unstained biological specimens using a low-energy, high-resolution STEM},
-  journal = {Journal of Electron Microscopy},
-  year = {2006},
-  volume = {55},
-  pages = {157-163}
-}
-@article{Batson2002,
-  author = {Batson, P.E. and Dellby, N. and Krivanek, O.L.},
-  title = {Sub-{\AA}ngstrom resolution using aberration corrected electron optics},
-  journal = {Nature},
-  year = {2002},
-  volume = {418},
-  pages = {617-622}
-}
-@article{Batson2006,
-  author = {Batson, P.E.},
-  title = {Characterizing probe performance in the aberration corrected {STEM}},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {106},
-  pages = {1104-1114}
-}
-@article{Wang2007a,
-  author = {Wang, J. and Zhou, M.J. and Hark, S.K. and Li, Q.},
-  title = {Local electronic structure and luminescence properties of Er doped ZnO nanowires},
-  journal = {Applied Physics Letters},
-  year = {2007},
-  volume = {89},
-  pages = {221917}
-}
-@article{Eisebit2004,
-  author = {Eisebit, S. and {J\"uning}, J. and Schlotter, W.F. and {L\"orgen}, M. and Hellwig, O. and Eberhardt, W. and {St\"ohr}, J.},
-  title = {Lensless imaging of magnetic nanostructures by {X-ray} spectro-holography},
-  journal = {Nature},
-  year = {2004},
-  volume = {432},
-  pages = {885-888}
-}
-@phdthesis{Tuggle1984,
-  author = {Tuggle, D.W.},
-  title = {Emission Characteristics and Electron optical properties of the ZrO/W point cathode},
-  year = {1984},
-  address = {Oregon State University},
-  school = {Oregon, USA}
-}
-@article{Cowley1959a,
-  author = {Cowley, J.M. and Moodie, A.F.},
-  title = {The Scattering of Electrons by Atoms and Crystals. {III.} {The} Single-Crytal Diffraction Patterns},
-  journal = {Acta Crystallography},
-  year = {1959},
-  volume = {12},
-  pages = {360-368}
-}
-@article{Harrach2009,
-  author = {Harrach, H.S. von},
-  title = {Development of the 300-kV Vacuum Generator STEM (1985-1996)},
-  journal = {Advances in Imaging and Electron Physics},
-  year = {2009},
-  volume = {159},
-  pages = {287-322}
-}
-@article{Plaisier2007,
-  author = {Plaisier, J.R. and Jiang, L. and Abrahams, J.P.},
-  title = {Cyclops: New modular software suite for cryo-EM},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {19-27}
-}
-@article{Benthem2006,
-  author = {Benthem, K. van and Lupini, A.R. and Oxley, M.P. and Findlay, S.D. and Alleen, L.J. and Pennycook, S.J.},
-  title = {Three-dimensional {ADF} imaging of individual atoms by through-focal series scanning transmission electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {106},
-  pages = {1062-1068}
-}
-@misc{Rieger2009,
-  author = {Zande, M. van der and Kok, C. and Rieger, B.},
-  title = {Method for determining the aberration coefficients of the aberration function of a particle-opticle lens},
-  year = {2009},
-  organization = {FEI Company},
-  howpublished = {EP1804272}
-}
-@article{Fujita2005,
-  author = {Fujita, S. and Shimoyama, H.},
-  title = {A new evaluation method of electron optical performance of high beam current probe forming systems},
-  journal = {Journal of Electron Mircoscopy},
-  year = {2005},
-  volume = {54},
-  number = {5},
-  pages = {413-427}
-}
-@article{Heel1997,
-  author = {Heel, M. van and Orlova, E.V. and Harauz, G. and Stark, H. and Dube, P. and Zemlin, F. and Schatz, M.},
-  title = {Angular reconstitution in three-dimensional electron microscopy: historical and theoretical aspects},
-  journal = {Scanning Microscopy},
-  year = {1997},
-  volume = {11},
-  pages = {195-210}
-}
-@article{Sawada2010,
-  author = {Sawada, H. and Sasaki, T. and Hosokawa, F. and Yuasa, S. and Terao, M. and Kawazoe, M. and Nakamichi, T. and Kaneyama, T. and Kondo. Y. and Kimoto, K. and Suenaga, K.},
-  title = {Higher-order aberration corrector for an image-forming system in a transmission electron microscope},
-  journal = {Ultramicroscopy},
-  year = {2010},
-  pages = {1-4}
-}
-@article{Rau1999,
-  author = {Rau, W.D. and Schwander, P. and Baumann, F.H. and Hoeppner, W. and Ourmazd, A.},
-  title = {Two-Dimensional Mapping of the Electrostatic Potential in Transistors by Electron Holography},
-  journal = {Physical Review Letters},
-  year = {1999},
-  volume = {82},
-  number = {12},
-  pages = {2614-2617}
-}
-@article{Kishita2009,
-  author = {Kishita, K. and Sakai, H. and Tanaka, H. and Saka, H. and Kuroda, K. and Sakamoto, M. and Watabe, A. and Kamnio, T.},
-  title = {Development of an analytical environmental TEM system and its application},
-  journal = {Journal of Electron Microscopy},
-  year = {2009},
-  volume = {58},
-  pages = {331-339}
-}
-@article{Bartle2008,
-  author = {Bartle, J. and Plies, E.},
-  title = {Energy width reduction using an electrostatic Omega-monochromator},
-  journal = {Physics Procedia},
-  year = {2008},
-  volume = {1},
-  pages = {479}
-}
-@article{Armstrong2007,
-  author = {Armstrong, M. R. and Boyden, K. and Browning, N.D. and Campbell, G.H. and Colvin, J.D. and DeHope, W.J. and Frank, A.M. and hartemann, F. and Kim, J.S. and King, W.E. and LaGrange, T.B. and Pyke, B.J. and Reed, B.W. and Shuttleswoth, M. and Stuart, B.C. and Torralava, B.R.},
-  title = {Practical considerations for high spatial and temporal resolution dynamic transmission electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {107},
-  pages = {356-367}
-}
-@article{Lichte1993,
-  author = {Lichte, H.},
-  title = {Parameters for gih-resolution electron holography},
-  journal = {Ultramicroscopy},
-  year = {1993},
-  volume = {51},
-  pages = {15-20}
-}
-@article{Blom2006,
-  author = {Blom, D.A. and Allard, L.F. and Mishina, S. and O'Keefe, M.A.},
-  title = {Early Results from an Aberration-Corrected {JEOL 2200FS} {STEM/TEM} at {Oak} {Ridge} {National} {Laboratory}},
-  journal = {Microscopy and Microanalysis},
-  year = {2006},
-  volume = {12},
-  pages = {483-491}
-}
-@article{Zach2009,
-  author = {Zach2009},
-  title = {Chromatic correction: a revolution in electron microscopy?},
-  journal = {Philosophical Transactions of the Royal Society},
-  year = {2009},
-  volume = {367},
-  pages = {3699-3707}
-}
-@article{Arslan2005,
-  author = {Arslan, I. and Yates, T.J.V. and Browning, N.D. and Midgley, P.A.},
-  title = {Embedded nanostructures revealed in three dimensions},
-  journal = {Sciences},
-  year = {2005},
-  volume = {309},
-  pages = {2195-2198}
-}
-@article{Urban2008,
-  author = {Urban, K.},
-  title = {Studying Atomic Structures by Aberration-Corrected Transmission Electron Microscopy},
-  journal = {Science},
-  year = {2008},
-  volume = {321},
-  pages = {506-510}
-}
-@article{Christenson1988,
-  author = {Christenson, K.K. and Eades, J.A.},
-  title = {Skew thoughts on parallelism},
-  journal = {Ultramicroscopy},
-  year = {1988},
-  volume = {26},
-  pages = {113-132}
-}
-@article{Lupini2003,
-  author = {Lupini, A.R. and Pennycook, S.J.},
-  title = {Localization in Elastic and Inelastic Scattering},
-  journal = {Ultramicroscopy},
-  year = {2003},
-  volume = {96},
-  pages = {313-322}
-}
-@article{Loane1992,
-  author = {Loane, R.F. and Xu, P. and Slicox, J.},
-  title = {Incoherent imaging of zone axis crystals with {ADF STEM}},
-  journal = {Ultramicroscopy},
-  year = {1992},
-  volume = {40},
-  pages = {121-138}
-}
-@phdthesis{Lupini2001,
-  author = {Lupini, A.R.},
-  title = {Aberration correction in {STEM}},
-  year = {2001},
-  address = {Cambridge, United Kingdom},
-  school = {University of Cambridge},
-  note = {Copy Bernd Rieger}
-}
-@article{Deptuch2007,
-  author = {Deptuch, G. and Besson, A. and Rehak, P. and Szelezniak, M. and Wall, J. and Winter, M. and Zhu, Y.},
-  title = {Direct electron imaging in electron microscopy with monolithic active pixel sensors},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {107},
-  pages = {674-684}
-}
-@article{Yamasaki2005,
-  author = {Yamasaki, J. and Sawada, H. and Tanaka, N.},
-  title = {First experiments of selected area nano-diffraction from semiconductor interfaces using a spherical aberration corrected {TEM}},
-  journal = {Journal of Electron Microscopy},
-  year = {2005},
-  volume = {54},
-  number = {2},
-  pages = {123-126}
-}
-@article{Rodenburg2006,
-  author = {Rodenburg, J.M. and Hurst, A.C. and Cullis, A.G.},
-  title = {Transmission microscopy without lenses for objects of unlimited size},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {107},
-  pages = {227-231}
-}
-@article{Stewart2004,
-  author = {Stewart, A. and Grigorieff, N.},
-  title = {Noise bias in the refinement of structures deried from single particles},
-  journal = {Ultramicroscopy},
-  year = {2004},
-  volume = {102},
-  pages = {67-84}
-}
-@inproceedings{CheynetXXXX,
-  author = {Cheynet, M.C. and Tichelaar, F.R. and Lazar, S. and Jullian, S. and Pantel, R.},
-  title = {{VEELS} experiments using a monochromated {FEG-TEM}},
-  pages = {1-2}
-}
-@article{Fan1996,
-  author = {Fan, G.Y. and Young, S.J. and Deerinck, T. and Ellisman, M.H.},
-  title = {A new electron-optical mode for high contrast imaging and online stereo observation in {TEM}},
-  journal = {Journal of Microscopy},
-  year = {1996},
-  volume = {2},
-  number = {3},
-  pages = {137-146}
-}
-@inproceedings{SaorzanoXXXX,
-  author = {Sorzano, C.O.S. and {Fern\'andez}, J.J. and Marabini, R. and Herman, G.T. and Censor, Y. and Carazo, J.M.},
-  title = {Transfer function restoration in {3D} electron microscopy via iterative data refinement},
-  pages = {1-4}
-}
-@article{Miao2002,
-  author = {Miao, J. and Ohsuna, T. and Terasaki, O. and Hodgson, K.O. and O'Keefe, M.A.},
-  title = {Atomic Resolution Three-Dimensional Electron Diffraction Microscopy},
-  journal = {Physical Review Letters},
-  year = {2002},
-  volume = {89}
-}
-@article{Lentzen2004,
-  author = {Lentzen, M.},
-  title = {The tuning of a {Zernike} phase plate with defocus and variable spherical aberration and its use in {HRTEM} imaging},
-  journal = {Ultramicroscopy},
-  year = {2004},
-  volume = {99},
-  pages = {211-220}
-}
-@article{Lentzen2002,
-  author = {Lentzen, M. and Jahnen, B. and Jia, C.L. and Thust, A. and Tillmann, K. and Urban, K.},
-  title = {High-resolution imaging with an aberration-corrected transmission electron microscope},
-  journal = {Ultramicroscopy},
-  year = {2002},
-  volume = {92},
-  pages = {233-242}
-}
-@article{Cowley1957,
-  author = {Cowley, J.M. and Moodie, A.F.},
-  title = {The Scattering of Electrons by Atoms and Crystals. {I.} {A} New Theorectial Approach},
-  journal = {Acta Crystallography},
-  year = {1957},
-  volume = {10},
-  pages = {609-620}
-}
-@article{Sander2005,
-  author = {Sander, B. and Golas, M.M. and Stark, H.},
-  title = {Advantages of CCD detectors for de novo three-dimensional structure determination in single-particle electron microscopy},
-  journal = {Journal of Structural Biology},
-  year = {2005},
-  volume = {151},
-  pages = {92-105}
-}
-@article{Alloyeau2009,
-  author = {Alloyeau, D. and Freitag, B. and Dag, S. and Wang, L.W. and Kisielowski, C.},
-  title = {Atomic-resolution three-dimensional imaging of germanium self-interstitials near a surface: Aberration-corrected transmission electron microscopy},
-  journal = {Physical Review B},
-  year = {2009},
-  volume = {80},
-  pages = {014114}
-}
-@article{Fujiyoshi1998,
-  author = {Fujiyoshi, Y.},
-  title = {The structural study of membranse proteins by electron crystallography},
-  journal = {Adv. Biophysics},
-  year = {1998},
-  volume = {35},
-  pages = {25-80}
-}
-@article{Cowley1959,
-  author = {Cowley, J.M. and Moodie, A.F.},
-  title = {The Scattering of Electrons by Atoms and Crystals. {II.} {The} Effect of Finite Source Size},
-  journal = {Acta Crystallography},
-  year = {1959},
-  volume = {12},
-  pages = {353-360}
-}
-@article{Baba2001,
-  author = {Baba, N. Teryama, K. and Yoshimizu, T. and Ichise, N. and Tanaka, N.},
-  title = {An auto-tunning method for focusing and astigmatism correction in HAADF-STEM, based on the image contrast transfer function},
-  journal = {Journal of Electron Micrsocopy},
-  year = {2001},
-  volume = {50},
-  pages = {163-176}
-}
-@article{Miyashita2004,
-  author = {Miyashita, K. and Yamamoto, K. and Hirayama, T. and Tanji, T.},
-  title = {Direct observation of electrostatic microfields by four-electron-wave interference using two electron biprisms},
-  journal = {Journal of Electron Microscopy},
-  year = {2004},
-  volume = {53},
-  number = {6},
-  pages = {577-582}
-}
-@article{Barthel2008,
-  author = {Barthel, J. and Thust, A.},
-  title = {Quantification of the Information Limit of Transmission Electron Microscopes},
-  journal = {Physical Review Letters},
-  year = {2008},
-  volume = {101},
-  pages = {200801}
-}
-@inproceedings{Barthel2005,
-  author = {Barthel, J. and Thust, A.},
-  title = {Ultra-Precise Measurement of Optical Aberrations for Sub-\AA ngstrom {HRTEM}},
-  year = {2005},
-  booktitle = {{Dreil\"andertagung}, 28 August - 2 September, Davos, Zwitserland}
-}
-@article{Winkler2007,
-  author = {Winkler, H.},
-  title = {3D reconstruction and processing of volumetric data in cryo-electron tomography},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {126-137}
-}
-@article{Kohl1985,
-  author = {Kohl, H. and Rose, H.},
-  title = {Theory of image formation by inelastically scattered electrons in the electron microscope},
-  journal = {Advances in Electronics and Electron Physics},
-  year = {1985},
-  volume = {65},
-  pages = {173-224}
-}
-@article{Henderson1992,
-  author = {Henderson, R.},
-  title = {Image contrast in high-resolution electron microscopy of biological macromlecules: {TMV} in ice},
-  journal = {Ultramicroscopy},
-  year = {1992},
-  volume = {46},
-  pages = {1-18}
-}
-@article{Einspahr2006,
-  author = {Einspahr, J.J. and Voyles, P.M.},
-  title = {Prospects for {3D}, nanometer-resolution imaging by confocal {STEM}},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {106},
-  pages = {1041-1052}
-}
-@article{Bohm2000,
-  author = {{B\"ohm}, J. and Frangakis, A.S. and Hegerl, R. and Nickell, S. and Typke, D. and Baumeister, W.},
-  title = {Toward detecting and identifying macromolecules in a cellular context: Template matching applied to electron tomograms},
-  journal = {Biophysical Journal},
-  year = {2000},
-  volume = {97},
-  pages = {14245-14250}
-}
-@article{Zhou1996,
-  author = {Zhou, Z.H. and Hardt, S. and Wang, B. and Sherman, M.B. and Jakana, J. and Chiu, W.},
-  title = {{CTF} Determination of Images of Ice-Embedded Single Particles Using from Cryoelectron Micrographs to Subnanometer Resolution},
-  journal = {Journal of Strcutural Biology},
-  year = {1996},
-  volume = {116},
-  number = {1},
-  pages = {216-22}
-}
-@article{Mitome2009,
-  author = {Mitome, M. and Ishizuka, K. and Bando, Y.},
-  title = {Quantitativeness of phase measurement by transport of intensity equation},
-  journal = {Journal of electron microscopy},
-  year = {2009},
-  pages = {1-9}
-}
-@article{Schiske1956,
-  author = {Schiske, P.},
-  title = {Die untere Grenze des Farbfehlers magnetischer Linsen bei vorgeschriebener Maximalfeldstaerke},
-  journal = {Optik},
-  year = {1956},
-  volume = {13},
-  pages = {502-503}
-}
-@article{Edgcombe1999,
-  author = {Edgcombe, C.J. and Lupini, A.R. and Taylor, J.H.},
-  title = {Robust optimization for magnetic lens design},
-  journal = {Nuclear Instruments and Methods in Physics Research A},
-  year = {1999},
-  volume = {427},
-  pages = {306-309}
-}
-@article{Abajo2010,
-  author = {Abajo, F.J. Garcia de},
-  title = {Optical excitations in electron microscopy},
-  journal = {REVIEWS OF MODERN PHYSICS},
-  year = {2010},
-  volume = {82},
-  pages = {209-275}
-}
-@article{Chang2006,
-  author = {Chang, L.Y. and Kirkland, A.I. and Tichmarsh, J.M.},
-  title = {On the importance of fifth-order spherical aberration for a fully corrected electron microscope},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  pages = {in press}
-}
-@article{Treacy2007,
-  author = {Treacy, M.M.J.},
-  title = {When structural noise is the signal: Speckle statistics in fluctuation electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {107},
-  pages = {166-171}
-}
-@article{Yi2010,
-  author = {Yi, F. and Tiemeijer, P. and Voyles, P.M.},
-  title = {Flexible formation of coherent probes on an aberrationcorrected STEM with three condensers},
-  journal = {Journal of Electron Microscopy},
-  year = {2010},
-  pages = {1-7}
-}
-@article{Erni2005,
-  author = {Erni, R. and Browning, N.D. and Dia, Z.R. and Bradley, J.P.},
-  title = {Analysis of extraterrestrial particles using monochromated electron energy-loss spectroscopy},
-  journal = {Micron},
-  year = {2005},
-  volume = {36},
-  pages = {369-379}
-}
-@article{Erni2006,
-  author = {Erni, R. and Freitag, B. and Hartel, P. and {M\"uller}, H. and Tiemeijer, P. and Stam, M. van der and Stekelenburg, M. and Hubert, D. and Specht, P. and Garibay-Febles, V.},
-  title = {Atomic Scale Analysis of Planar Defects in Polycrystalline Diamond},
-  journal = {Microscopy and Microanalysis},
-  year = {2006},
-  volume = {12},
-  pages = {492-497}
-}
-@article{Erni2007,
-  author = {Erni, R. and Browning, N.D.},
-  title = {Quantification of the size-dependent energy gap of individual {CdSe} quantum dots by valence electron energy-loss spectroscopy},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {107},
-  pages = {267-273}
-}
-@article{Peng2004,
-  author = {Peng, Y. and Nellist, P.D. and Pennycook, S.J.},
-  title = {{HAADF-STEM} Imaging With Sub-{\AA}ngstrom Probes, a full Bloch wave analysis},
-  journal = {Journal of Electron Microscopy},
-  year = {2004},
-  volume = {53},
-  pages = {257}
-}
-@article{Erni2008,
-  author = {Erni, R. and Lazar, S. and Browning, N.D.},
-  title = {Prospects for analyzing the electronic properties in nanoscale systems by {VEELS}},
-  journal = {Ultramicroscopy},
-  year = {2008},
-  volume = {108},
-  pages = {270-276}
-}
-@article{Erni2009,
-  author = {Erni, R. and Rossell, M.D. and Kisielowski, C. and Dahmen, U.},
-  title = {Atomic-resolution Imaging with sub-50-pm Electron Probe},
-  journal = {Physical Review Letters},
-  year = {2009},
-  volume = {102},
-  pages = {096101}
-}
-@article{Malac2007,
-  author = {Malac, M. and Beleggia, M. and Egerton, R. and Zhu, Y.},
-  title = {Imaging of radiation-sensitive samples in transmission electron microscopes equipped with Zernike phase plates},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {108},
-  pages = {126-140}
-}
-@article{Bron1999,
-  author = {Bron, P. and {Lacap\'ere}, J.-J. and Breyton, C. and Mosser, G.},
-  title = {The 9 {\AA} projection structure of cytochrome $b_6f$ complex determined by electron crystallography},
-  journal = {Journal of Molecular Biology},
-  year = {1999},
-  volume = {287},
-  pages = {117-126}
-}
-@inproceedings{Kothleitner2003a,
-  author = {Kothleitner, G. and Mitterbauer, C. and Grogger, W. and Zandbergen, H. and Tiemeijer, P.C. and Bert Freitag, B. and Barfels, M. and Hofer, F.},
-  title = {First Applications of Electron Energy-Loss Spectroscopy with High Energy Resolution},
-  year = {2003},
-  volume = {738},
-  pages = {27-32},
-  booktitle = {Mat. Res. Soc. Symp. Proc.}
-}
-@article{Saxton1998,
-  author = {Saxton, W.O.},
-  title = {Quantitative comparision of images and transforms},
-  journal = {Journal of Microscopy},
-  year = {1998},
-  volume = {1-2},
-  pages = {52-60}
-}
-@article{Kothleitner1998,
-  author = {Kothleitner, G. and Hofer, F.},
-  title = {Optimization of the Signal to Noise Ratio in {EFTEM} Elemental Maps with Regard to Different Eonization Edge Types},
-  journal = {Micron},
-  year = {1998},
-  volume = {29},
-  number = {5},
-  pages = {349-357}
-}
-@article{Dwyer2007,
-  author = {Dwyer, C. and Kirkland, A.I. and Hartel, P. and {M\"uller}, H. and Haider, M.},
-  title = {Electron nanodiffraction using sharply focused parallel probes},
-  journal = {Applied Physics Letters},
-  year = {2007},
-  volume = {90},
-  pages = {151104}
-}
-@article{Dwyer2008,
-  author = {Dwyer, C. and Erni, R. and Etheridge, J.},
-  title = {Method to measure spatial coherence of subangstrom electron beams},
-  journal = {Applied Physics Letters},
-  year = {2008},
-  volume = {93},
-  pages = {021115}
-}
-@book{Reisner,
-  author = {Reisner, J.H.},
-  title = {An early history of the electron microsope in the united states},
-  year = {1989},
-  publisher = {Adavances in electronics and electron physics},
-  edition = {73},
-  note = {sold out, reprint 2006}
-}
-@article{Bottcher1995,
-  author = {{B\"ottcher}, B.},
-  title = {Electron cryo-micrsocopy of graphite in amorphous ice},
-  journal = {Ultramicroscopy},
-  year = {1995},
-  volume = {58},
-  pages = {417-424}
-}
-@article{Coene1992,
-  author = {Coene, W.M.J. and Jansen, G. and Beeck, M. op de and Dyck, D. van},
-  title = {Phase retrieval through focus variation for ultra-resolution in field-emission transmission electron microscopy},
-  journal = {Physical Review Letters},
-  year = {1992},
-  volume = {69},
-  number = {26},
-  pages = {3743-3749}
-}
-@article{Atsuzawa2009,
-  author = {Atusuzawa, K. and et al.},
-  title = {High-contrast imaging of plastic-embedded tissues by phase contrast electron microscopy},
-  journal = {Journal of Electron Microscopy},
-  year = {2009},
-  volume = {58},
-  pages = {35-45}
-}
-@article{Bailey2004,
-  author = {Bailey, B. and Agard, D.A. and Sedat, J.W. and Barfels, M. and Chao, H. and Mooney, P.E.},
-  title = {Performance Evaluation of a Transmission Scintillator-Based Lens-Coupled 4K CCD Camera for Use in Low-Dose Electron Cryo-Microscopy},
-  journal = {Mircoscopy Mircoanal},
-  year = {2004},
-  volume = {10},
-  pages = {S2}
-}
-@article{Muto2006,
-  author = {Muto, S. and Pueter, R.C. and Tatsumi, K.},
-  title = {Spectral restoration and energy resolution improvement of electron energy-loss spectra by Pixon reconstruction: {I. Principle} and test examples},
-  journal = {Journal of Electron Microscopy},
-  year = {2006},
-  volume = {55},
-  number = {4},
-  pages = {215-223}
-}
-@article{Alem2009,
-  author = {Alem, N. and Erni, R. and Kisielowski, C. and Rosell, M.D. and Gannett, W. and Zettl, A.},
-  title = {Atomically thin hexagonal boron nitride probed by ultrahigh-resolution transmission electron microscopy},
-  journal = {Physics Review B},
-  year = {2009},
-  volume = {80},
-  pages = {155425}
-}
-@article{Meyer2008a,
-  author = {Meyer, J.C. and Kisielowski, C. and Erni, R. and Rossell, M.D. and Crommie, M.F. and Zettl, A.},
-  title = {Direct Imaging of Lattice Atoms and Topological Defects in Graphene Membranes},
-  journal = {Nano Letters},
-  year = {2008},
-  volume = {8},
-  pages = {3582-3586}
-}
-@article{Ishizuka1980,
-  author = {Ishizuka, K.},
-  title = {Contrast transfer of crystal images in {TEM}},
-  journal = {Ultramicroscopy},
-  year = {1980},
-  volume = {5},
-  pages = {55-65}
-}
-@article{Jia2008,
-  author = {Jia, C.-L. and Mi, S.-B. and Urban, K. and Verjoiu, I. and Alexe, M. and Hesse, D.},
-  title = {Atomic-scale study of electric dipoles near charged and uncharged domain walls in ferroelectric films},
-  journal = {Nature},
-  year = {2008},
-  volume = {7},
-  pages = {57-61}
-}
-@article{Gonen2004,
-  author = {Gonen, T. and Sliz, P. and Kistler, J. and Cheng, Y. and Walz, T.},
-  title = {Aquaporin-O membrane junctions reveal the structure of a closed water pore},
-  journal = {Nature},
-  year = {2004},
-  volume = {429},
-  pages = {193-196}
-}
-@article{Jia2004,
-  author = {Jia, C.-L. and Lentzen, M. and Urban, K.},
-  title = {High-Resolution Transmission Electron Microscopy Using Negative Spherical Aberration},
-  journal = {Microscopy and Mircoanalysis},
-  year = {2004},
-  volume = {10},
-  pages = {174-184}
-}
-@article{Ishitani2002a,
-  author = {Ishitani, T. and Sato, M.},
-  title = {A Method for Personal Expertise-Independent Evaluation of Image Resolution in Scanning Electron Microscopy},
-  journal = {Scanning},
-  year = {2003},
-  volume = {24},
-  number = {4},
-  pages = {191-203}
-}
-@article{Oho2001,
-  author = {Oho, E. and Toyomura, K.},
-  title = {Strategies for Optimum Use of Superposition Diffractogram in Scanning Electron Microscopy},
-  journal = {Scanning},
-  year = {2001},
-  volume = {23},
-  number = {5},
-  pages = {351-356}
-}
-@article{Kazemian2006,
-  author = {Kazemian, P. and Mentink, S.A.M. and Rodenburg, C. and Humphreys, C.J.},
-  title = {Quantitative secondary electron energy filtering in a scanning electron microscope and its applications},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {107},
-  pages = {140-150}
-}
-@article{Rau1996,
-  author = {Rau, E.I. and Robinson, V.N.E.},
-  title = {An Annular Toroidal Backscattered Electron Energy Analyser for Use in Scanning Electron Microscopy},
-  journal = {Scanning},
-  year = {1996},
-  volume = {18},
-  pages = {556-561}
-}
-@article{Bronsgeest2007,
-  author = {Bronsgeest, M.S. and barth, J.E. and Schwind, G.A. and Swanson, L.W. and Kruit, P.},
-  title = {Extracting the Boersch effect contribution from experimental energy spread measurements for Schottky electron emitters},
-  journal = {Journal of Vaccuum Science Technology B},
-  year = {2007},
-  volume = {25},
-  number = {6},
-  pages = {2049-254}
-}
-@article{Nellist1999,
-  author = {Nellist, P.D. and Pennycook, S.J.},
-  title = {Incoherent imaging using dynamically scattered coherent electrons},
-  journal = {Ultramicroscopy},
-  year = {1999},
-  volume = {78},
-  pages = {111-124}
-}
-@article{Nellist1998,
-  author = {Nellist, P.D. and Pennycook, S.J.},
-  title = {Subangstrom Resolution by Underfocused Incoherent Transmission Electron Microscopy},
-  journal = {Physical Review Letters},
-  year = {1998},
-  volume = {81},
-  number = {19},
-  pages = {4156-4159}
-}
-@article{Yonekura2006,
-  author = {Yonekura, K. and Braunfeld, M.B. and Mari-Yonekura, S. and Agard, D.A.},
-  title = {Electron energy filtering significantly improves amplitude contrast of frozen-hydrated protein at 300 kV},
-  journal = {Journal of Structural Biology},
-  year = {2006},
-  volume = {156},
-  pages = {524-536}
-}
-@article{Park2009,
-  author = {Park, H.S. and Baskin, J.S. and Barwick, B. and Kwon, O.H. and Zewail, A.H.},
-  title = {4D ultra fast electron microscopy: Imaging of atomic motions, acoustic resonances, and moire fringe dynamics},
-  journal = {Ultramicroscopy},
-  year = {2009},
-  volume = {110},
-  pages = {7-19}
-}
-@article{Bahn2008,
-  author = {Bahn, A.S. and J.E. and Schwind, G.A. and Swanson},
-  title = {Range of validity of field emission equations},
-  journal = {Journal of Vaccuum Science Technology B},
-  year = {2008},
-  volume = {26},
-  number = {6},
-  pages = {2080-2084}
-}
-@article{Beck2004,
-  author = {Beck, M. and {F\"orster}, F. and Ecke, M. and Plitzko, J.M. and Melchior, F. and Gerisch, G. and Baumeister, W. and Medalia, O.},
-  title = {Nuclear Pore Complex Structure and Dynamics Revealed by Cryoelectron Tomography},
-  journal = {Science},
-  year = {2004},
-  volume = {306},
-  pages = {1387-1390}
-}
-@article{Ban2000,
-  author = {Ban, N. and Nissen, P. and Hansen, J. and Moore, P.B. and Steitz, T.A.},
-  title = {The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 {\AA} Resolution},
-  journal = {Science},
-  year = {2000},
-  volume = {289},
-  pages = {905-920}
-}
-@article{Havelka1993,
-  author = {Havelka, W. A. and Henderson, R. and Heymann, J.A.W. and Oesterhelt, D.},
-  title = {Projection structure of Halorhodopsin from Halobacterium halobium at 6 {\AA} resolution obtrained by electron cryo-microscopy},
-  journal = {Journal of Molecular Biology},
-  year = {1993},
-  volume = {234},
-  pages = {837-846}
-}
-@article{Havelka1995,
-  author = {Havelka, W.A. and Henderson, R. and Oesterhelt, D.},
-  title = {Three-dimensional structure of halorhodopsin at 7 {\AA} resolution},
-  journal = {Journal of Molecular Biology},
-  year = {1995},
-  volume = {247},
-  pages = {726-738}
-}
-@article{Ruprecht2001,
-  author = {Ruprecht, J. and Nield, J.},
-  title = {Determining the structure of biological macromolecules by transmission electron microscopy, single particle analysis and 3D reconstruction},
-  journal = {Biophysics and Molecular Biology},
-  year = {2001},
-  volume = {75},
-  pages = {121-164}
-}
-@article{Pennycook2000,
-  author = {Pennycook, S.J. and Rafferty, B. and Nellist, P.D.},
-  title = {Z-Contrast Imaging in an Aberration-Corrected Scanning Transmission Electron Microscope},
-  journal = {Microscopy and Microanalysis},
-  year = {2000},
-  volume = {6},
-  pages = {343}
-}
-@inproceedings{Pennycook2003,
-  author = {Pennycook, S.J. and Lupini, A.R. and Varela, M. and Borisevich, A. and Peng, Y. and Nellist, P.D.},
-  title = {Quantum Mechanical Resolution Limits to Imaging and Spectroscopy in the Transmission Electron Microscope},
-  year = {2003},
-  pages = {126},
-  editor = {McGuire, J.},
-  publisher = {Old Dominion Universtity},
-  booktitle = {From the Atomic to the Nano Scale}
-}
-@article{Pennycook2009,
-  author = {Zach2009},
-  title = {Aberration corrected scanning transmission electron microscopy: from atomic imaging and analysis to solving energy problems},
-  journal = {Philosophical Transactions of the Royal Society},
-  year = {2009},
-  volume = {367},
-  pages = {3709-3733}
-}
-@article{Pennycook1990,
-  author = {Pennycook, S.J. and Jesson, D.E.},
-  title = {High-Resolution Incoherent Imaging of Crystals},
-  journal = {Physical Review Letters},
-  year = {1990},
-  volume = {64},
-  pages = {938}
-}
-@article{Muto2006a,
-  author = {Muto, S. and Tatsumi, K. and Puetter, R.C. and Yosida, T. and Yamamoto, Y. and Sasano, Y.},
-  title = {Spectral restoration and energy resolution improvement of electron energy-loss spectra by Pixon reconstruction: {II. Application} to practical {ELNES} analysis of low {SNR}},
-  journal = {Journal of Electron Microscopy},
-  year = {2006},
-  volume = {55},
-  number = {4},
-  pages = {225-230}
-}
-@article{Kujawa1990,
-  author = {Kujawa, S. and Krahl, D. and Niedrig, H. and Zeitler, E.},
-  title = {Second-rank aberrations of a magnetic imaging energy filter: measurement and correction},
-  journal = {Optik},
-  year = {1990},
-  volume = {86},
-  pages = {39-46}
-}
-@article{Kujawa1992,
-  author = {Kujawa, S. and Krahl, D.},
-  title = {Performance of a low-noise CCD camera adapted to a transmission electron microscope},
-  journal = {Ultramicrosopy},
-  year = {1992},
-  volume = {46},
-  pages = {395-403}
-}
-@article{Lugg2010,
-  author = {Lugg, N.R. and Freitag, B. and Findlay, S.D. and Allen, L.J..},
-  title = {Energy-filtered transmission electron microscopy based on inner-shell ionization},
-  journal = {Ultramicroscopy},
-  year = {2010}
-}
-@article{Avoort2005,
-  author = {Avoort, C. van der and Braat, J.J.M. and Dirksen, P. and Janssen, A.J.E.M.},
-  title = {Aberration retrieval from the intensity point-spread function in the focal region using the extended {Nijboer-Zernike} approach},
-  journal = {Journal of Modern Optics},
-  year = {2005},
-  volume = {52},
-  number = {12},
-  pages = {1695-1728}
-}
-@article{Eastham2009,
-  author = {Eastham, D.A. and Edmondson, P. and Greene, S. and Donnelly, S. and Olsson, E. and Svensson, K. and Bleloch, A.},
-  title = {A design for a subminiature, low energy scanning electron microscope with atomic resolution},
-  journal = {Journal of Appplied Physics},
-  year = {2009},
-  volume = {105},
-  pages = {014702}
-}
-@article{Schonhense2002,
-  author = {{Sch\"onhense}, G. and Spiecker, H.},
-  title = {Correction of chromatic and spherical aberration in electron microscopy utilizing the time structure of pulsed excitation sources},
-  journal = {Journal of Vacuum Science Technology B},
-  year = {2002},
-  volume = {20},
-  number = {6},
-  pages = {2526-2534}
-}
-@article{Sawada2005,
-  author = {Sawada, H. and Tomita, T. and Naruse, M. and Honda, T. and Hambridge, P. and Hartel, P. and Haider, M. and Hetherington, C. and Doole, R. and Kirkland, A. and Hutchison, J. and Titchmarsh, J. and Cockayne, D.},
-  title = {Experimental evaluation of a spherical aberration-corrected {TEM} and {STEM}},
-  journal = {Journal of Electron Microscopy},
-  year = {2005},
-  volume = {54},
-  number = {2},
-  pages = {119-121}
-}
-@article{Hartel1996,
-  author = {Hartel, P. and Rose, H. and Dinges, C.},
-  title = {Conditions and reasons for incoherent imaging in {STEM}},
-  journal = {Ultramicroscopy},
-  year = {1996},
-  volume = {63},
-  pages = {93-114}
-}
-@article{Egelman2007,
-  author = {Egelman, E.H.},
-  title = {The iterative helical real space reconstruction method: Surmounting the problems posed by real polymers},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {83-94}
-}
-@article{Sawada2009,
-  author = {Sawada, H. and Sasaki, T. and Hosokawa, F. and Yuasa, S. and Terao, M. and Kawazoe, M .and Nakamichi, T. and Kaneyama, T. and Kondo, Y. and Kimoto, K. and Suenada, K.},
-  title = {Correction of higher order geometrical aberration by triple 3-fold astigmatism field},
-  journal = {Journal of electron microscopy},
-  year = {2009},
-  pages = {1-7}
-}
-@article{Sawada2008,
-  author = {Sawada, H. and Sannomiya, T. and Hosokawa, F. and Nakamichi, T. and Kaneyama, T. and Tomita, T. and Kondo, Y. and Tanaka, T. and Oshima, Y. and Tanishiro, Y. and Takayanagi, K.},
-  title = {Measurement method of aberration from Ronchigram by autocorrelation function},
-  journal = {Ultramicroscopy},
-  year = {2008},
-  volume = {108},
-  pages = {1467-1475}
-}
-@article{Erni2005a,
-  author = {Erni, R. and Browning, N.D.},
-  title = {Valence electron energy-loss spectroscopy in monochromated scanning transmission electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {2005},
-  volume = {104},
-  pages = {176-192}
-}
-@article{Gilbert1972,
-  author = {Gilbert, P.},
-  title = {Iterative Methods for the three-dimensional reconstruction of a object from projections},
-  journal = {Journal of Theoretical Biology},
-  year = {1972},
-  volume = {36},
-  number = {1},
-  pages = {105-117}
-}
-@article{Shiue2009,
-  author = {Shiue, J. and et al.},
-  title = {Phase TEM for biological imaging utilizing a Boersch electrostatic phase plate: theory and practice},
-  journal = {Journal of Electron Microscopy},
-  year = {2009},
-  volume = {58},
-  pages = {135-145}
-}
-@techreport{Zande2005,
-  author = {Zande, M.J. van der and Kok, C.},
-  title = {Local magnification in Ronchigrams (Aberration retrieval in {STEM})},
-  year = {2005},
-  number = {PR-TN-2005/00002},
-  address = { Eindhoven, The Netherlands},
-  institution = {Philips Research},
-  type = {Technical Note}
-}
-@article{Rafferty1998,
-  author = {Rafferty, B. and Brown, L.M.},
-  title = {Direct and indirect transitions in the region of the band gap using electron-energy-loss spectroscopy},
-  journal = {Physical Review B},
-  year = {1998},
-  volume = {58},
-  number = {16},
-  pages = {10326-10337}
-}
-@article{Lichte1986,
-  author = {Lichte, H.},
-  title = {Electron Holography approaching atomic resolution},
-  journal = {Ultramicroscopy},
-  year = {1986},
-  volume = {20},
-  pages = {293-304}
-}
-@article{Bosman2009,
-  author = {Bosman, M. and Tang, L.J. and Ye, J.D. and Zhang, Y. and Keast, V.J.},
-  title = {Nanoscale band gap spectroscopy on ZnO and GaN-based compounds with a monochromated electron microscope},
-  journal = {Applied Physics Letters},
-  year = {2009},
-  volume = {95},
-  pages = {101110}
-}
-@article{Conway1999,
-  author = {Conway, J.F. and Steven, A.C.},
-  title = {Methods for Reconstructing Density Maps of Single Particles from Cryoelectron Micrographs to Subnanometer Resolution},
-  journal = {Journal of Strcutural Biology},
-  year = {1999},
-  volume = {128},
-  pages = {106-118}
-}
-@article{Muller2008a,
-  author = {Muller, H. and Uhlemann, S. and Hartel, P. and Haider, M.},
-  title = {Aberration-corrected optics: from an idea to a device},
-  journal = {Physcis Procedia},
-  year = {2008},
-  volume = {1},
-  pages = {167-178}
-}
-@article{Chiu1977,
-  author = {Chiu, W. and Glaeser, R.M.},
-  title = {Factors affecting high resolution fixed-beam transmission electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {1977},
-  volume = {2},
-  pages = {207-217}
-}
-@article{HitatchiSEM2007,
-  author = {Ngo, V. van and Hernandez, M. and Roth, B. and Joy, D.C.},
-  title = {{STEM} Imaging of Lattic Fringes and beyond in a {UHR} In-Lens Field-Emission {SEM}},
-  journal = {Microscopy Today},
-  year = {2007},
-  number = {3},
-  pages = {12-16}
-}
-@article{Schatz1997,
-  author = {Schatz, M. and Orlova, E.V. and Harauz, G. and Stark, H. and Dube, P. and Zemlin, F. and Heel, M. van},
-  title = {Angular reconstitution in three-dimensional electron microscopy: practical and technical aspects},
-  journal = {Scanning Microscopy},
-  year = {1997},
-  volume = {11},
-  pages = {179-193}
-}
-@article{Isabell2009,
-  author = {Isabell, T. and Brink, J. and Kawasaki, M. and Armbruster, B. and Ishikawa, I. and Okunishi, E. and Sawada, H. and Okura, Y. and Yamazaki, K. and Ishikawa, T. and Kawazu, M. and Hori, M. and Terao, M. and Kanno, M. and Tanba, S. and Kondo, Y.},
-  title = {Development of a 200kV Atomic resolution Analytical Electron Microscope},
-  journal = {Microscopy Today},
-  year = {2009},
-  pages = {8-10}
-}
-@article{Penczek2002a,
-  author = {Penczek, P.A.},
-  title = {Resolution Measures in Single Particle Analysis},
-  year = {2002}
-}
-@article{Majorovits2007,
-  author = {Majorovits, E. and Barton, B. and {Schulthei\ss}, K. and Perez-Willard, F. and Gerthsen, D. and {Schr\"oder}, R.R.},
-  title = {Optimizing phase contrast in transmission electron microscopy with an electrostatic (Boersch) phase plate},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {107},
-  pages = {213-226}
-}
-@article{Baumeister2004,
-  author = {Baumeister, W.},
-  title = {Mapping molecular landscapes inside cells},
-  journal = {Biological Chemistry},
-  year = {2004},
-  volume = {385},
-  pages = {865-872}
-}
-@article{Harrach1995,
-  author = {Harrach, H.S. von},
-  title = {Instrumental factors in high-resolution {FEG STEM}},
-  journal = {Ultramicroscopy},
-  year = {1995},
-  volume = {58},
-  pages = {1-5}
-}
-@article{Baxter2007,
-  author = {Baxter, W.T. and Leith, A. and Frank, J.},
-  title = {SPIRE: The SPIDER Reconstruction Engine},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {56-63}
-}
-@article{Rafferty2001,
-  author = {Rafferty, B. and Nellist, P.D. and Pennycook, S.J.},
-  title = {On the origin of transverse incoherence in {Z-}constrast {STEM}},
-  journal = {Journal of Electron Microscopy},
-  year = {2001},
-  volume = {50},
-  number = {3},
-  pages = {227-233}
-}
-@article{Drummy2004,
-  author = {Drummy, L.F. and Yang, J. and Martin, D.C.},
-  title = {Low-voltage electron microscopy of polymer and organic molecular thin films},
-  journal = {Ultramicroscopy},
-  year = {2004},
-  volume = {99},
-  pages = {247-256}
-}
-@article{Jiang2006,
-  author = {Jiang, N. and Jiang, B. and Erni, R. and Browning, N.D. and Spence, J.C.H.},
-  title = {Experimental and theoretical improvements on understanding of the {O K-edge} of {TeO}$_2$},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {106},
-  pages = {123-129}
-}
-@article{Jiang2005,
-  author = {Jiang, W. and Baker, M.L. and Wu, Q. and Bajaj, C. and Chiu, W.},
-  title = {Applications of a bilateral denoising filter in biological electron microscopy},
-  journal = {Journal of Structural Biology},
-  year = {2003},
-  volume = {144},
-  pages = {114-122}
-}
-@article{Jiang2008,
-  author = {Jiang, X. and chen, R. and Bent, S.F.},
-  title = {Spatial control over atomic layer deposition using microcontact-printed resists},
-  journal = {Surface & Coatings Technology},
-  year = {2008},
-  volume = {201},
-  pages = {8799-8807}
-}
-@article{Chen2007,
-  author = {Chen, J.Z. and Sachse, C. and Xu, C. and Mielke, T. and Spahn, C.M.T. and Grigorieff, N.},
-  title = {A dose-rate effect in single-particle electron microscopy},
-  journal = {Journal of Structural Biology},
-  year = {2007},
-  volume = {161},
-  pages = {92-100}
-}
-@article{Alloyeau2010,
-  author = {Alloyeau, D. and Hsieh, W.K. and Anderson, E.H. and Hilken, L. and Benner, G. and Meng, X. and Chen, F.R. and Kisielowski, C.},
-  title = {Imaging of soft and hard materials using a Boersch phase plate in a transmission electron microscope},
-  journal = {Ultramicroscopy},
-  year = {2010},
-  volume = {110},
-  pages = {563-570}
-}
-@article{Heel2005,
-  author = {Heel, M. van and Schatz, M.},
-  title = {Fourier shell correlation threshold criteria},
-  journal = {Journal of Structural Biology},
-  year = {2005},
-  volume = {151},
-  pages = {250-262}
-}
-@article{Heel2000,
-  author = {Heel, M. van and Gowen, B. and Matadeen, R. and Orlova, E.V. and Finn, R. and Pape, T. and Cohen, D. and Stark, H. and Schmidt, R. and Schatz, M. and Patwardhan, A.},
-  title = {Single-particle electron cryo-microscopy: towards atomic resolution},
-  journal = {Quarterly Review of Biophysics},
-  year = {2000},
-  volume = {33},
-  number = {4},
-  pages = {307-369}
-}
-@article{Walther2006a,
-  author = {Walther, T. and Stegmann, H.},
-  title = {Preliminary Results from the First Monochromated and Aberration Corrected 200-kV Field-Emission Scanning Transmission Electron Microscope},
-  journal = {Microscopy and Microanalysis},
-  year = {2006},
-  volume = {12},
-  pages = {498-505}
-}
-@article{Yamaguchi2009,
-  author = {Yamaguchi, M. and Okada, H. and Namiki, Y.},
-  title = {Smart specimen preparation for freeze substitution and serial ultrathin sectioning of yeast cells},
-  journal = {Journal of Electron Microscopy},
-  year = {2009},
-  volume = {58},
-  pages = {261-266}
-}
-@article{Sparrow1916,
-  author = {Sparrow, C.M.},
-  title = {On spectroscopic resolving power},
-  journal = {Astrophysical Journal},
-  year = {1916},
-  volume = {44},
-  pages = {76-86}
-}
-@article{Rose1984,
-  author = {Rose, H.},
-  title = {Information transfer in transmission electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {1984},
-  volume = {15},
-  pages = {173-192}
-}
-@article{Martinez2008,
-  author = {Martinez, G. and Tsuno, K.},
-  title = {The use of multipole fields for aberration correctionin pi/2 Wien filters},
-  journal = {Physics Procedia},
-  year = {2008},
-  volume = {1},
-  pages = {193-198}
-}
-@article{Driel2009,
-  author = {Driel, L.F. van and Valentijn, J.A. and Valentijn, K.M. and Koning, R.I. and Koster, A.J.},
-  title = {Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells},
-  journal = {European Journal of Cell Biology},
-  year = {2009},
-  volume = {88},
-  pages = {669-684}
-}
-@article{Pomfret2007,
-  author = {Pomfret, A.J. and Rice, W.J. and Stokes, D.L.},
-  title = {Application of the iterative helical real-space reconstruction method to large membranous tubular crystals of P-type ATPases},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {106-116}
-}
-@article{Beek1996,
-  author = {Beek, M. op de and Dyck, D. van and Coene, W.},
-  title = {Wave function reconstruction in {HRTEM}: the parabola method},
-  journal = {Ultramicroscopy},
-  year = {1996},
-  volume = {64},
-  pages = {167-183}
-}
-@article{Lichte2008,
-  author = {Lichte, H.},
-  title = {Performance limits of electron holography},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {108},
-  pages = {256-262}
-}
-@article{Hue2005,
-  author = {Hue, F. and Johnson, C.L. and Lartigue-Korinek, S. and Wang, G. and Buseck, P.R. and Hytch, M.J.},
-  title = {Calibration of Projector Lens Distortions for Quantitative High-Resolution TEM},
-  journal = {Microsc Microanal},
-  year = {2005},
-  volume = {11 (Suppl 2)},
-  pages = {552-553}
-}
-@article{Kaiser2002,
-  author = {Kaise, U. and Muller, D.A. and Grazul, J.L. and Chuvilin, A. and Kawasaki, M.},
-  title = {Direct observation of defect-mediated cluster nucleation},
-  journal = {Nature materials},
-  year = {2002},
-  volume = {1},
-  pages = {102-106}
-}
-@article{Turchanin2009,
-  author = {Turchanin, A. and Beyer, A. and Nottbohm, T. and Zhang, X. and Stosch, R. and and Sologubenko, A.S. and Mayer, J. and Hinze, P. and Weimann, T. and {G\"olzh\"auser}},
-  title = {One Nanometer Thin Carbon Nanosheets with Tunable Conductivity and Stiffness},
-  journal = {Advanced Materials},
-  year = {2009},
-  volume = {21},
-  pages = {1233-1237}
-}
-@article{Mkhoyan2006,
-  author = {Mkhoyan, K.A. and Batson, P.E. and Cha, J. and Schaff, W.J. and Silcox, J.},
-  title = {Direct Determination of Local Lattice Polarity in Crystals},
-  journal = {Science},
-  year = {2006},
-  volume = {312},
-  pages = {1354}
-}
-@inproceedings{Sawada2006,
-  author = {Sawada, H. and Sannomiya, T. and Hosokawa, F. and Kaneyama, T. and Kondo, Y. and Tanishiro, Y. and Takayanagi, K.},
-  title = {Method to Measure Aberrations from Ronchigram by Auto-Correlation Function},
-  journal = {Journal of Electron Microscopy},
-  volume = {IMC 16},
-  address = {Sapporo, Japan}
-}
-@article{Allen2003,
-  author = {Allen, L.J. and Findlay, S.D. and Lupini, A.R. and Oxley, M.P. and Pennycook, S.J.},
-  title = {Atomic Resolution Electron Energy Loss Spectroscopy Imaging in Aberration Corrected Scanning Transmission Electron Microscopy},
-  journal = {Physical Review Letters},
-  year = {2003},
-  volume = {91},
-  pages = {105503}
-}
-@article{Erni2010,
-  author = {Erni, R. and Rossell, M.D. and Nakashima, P.N.H.},
-  title = {Optimizationofexit-planewavesrestoredfromHRTEMthrough-focalseries},
-  journal = {Ultramicroscopy},
-  year = {2010},
-  volume = {110},
-  pages = {151-161}
-}
-@article{Meyer1998,
-  author = {Meyer, R.R. and Krikland, A.I.},
-  title = {The effects of electron and photon scattering on signal and noise transfer properties of scintillators in CCD cameras used for electron detection},
-  journal = {Ultramicroscopy},
-  year = {1998},
-  volume = {75},
-  pages = {23-33}
-}
-@article{Lencova2008,
-  author = {Lencova, B. and Lenc, M. and Hawkes, P.W.},
-  title = {A pitfall in the calculation of higher order aberrations},
-  journal = {Ultramicroscopy},
-  year = {2008},
-  volume = {108},
-  pages = {737-740}
-}
-@article{Browning1996,
-  author = {Browning, N.D. and Pennycook, S.J.},
-  title = {Direct Experimental Determination of the Atomic Structure at Internal Interfaces},
-  journal = {Journal of Physics D},
-  year = {1996},
-  volume = {29},
-  pages = {1779}
-}
-@article{Fellmann2002,
-  author = {Fellmann, D. and Pulokas, J. and MIlligan, R.A. and Carragher, B. and Potter, C.S.},
-  title = {A relational database for {cryoEM}: experience at one year and 50000 images},
-  journal = {Journal of Structural Biology},
-  year = {2002},
-  volume = {137},
-  pages = {273-282}
-}
-@article{Mueller2007,
-  author = {{M\"uller}, S.A. and Engel, A.},
-  title = {Biological Scanning Transmission Electron Microscopy: Imaging and Single Molecule Mass Determination},
-  journal = {Chimia},
-  year = {2006},
-  volume = {60},
-  number = {11},
-  pages = {749-752}
-}
-@article{Rhinow2008,
-  author = {Rhinow, D. and Kuhlbrandt, W.},
-  title = {Electron cryo-microscopy of biological specimens on conductive titanium-silicon metal glass films},
-  journal = {Ultramicroscopy},
-  year = {2008},
-  volume = {108},
-  pages = {698-705}
-}
-@article{Nomaguchi2004,
-  author = {Nomaguchi, T. and Kawasaki, T. and Kimura, Y. and Takai, Y.},
-  title = {Separation of linear and non-linear imaging components in high-resolution transmission electron microscope images},
-  journal = {Journal of Electron Microscopy},
-  year = {2004},
-  volume = {53},
-  pages = {403-406}
-}
-@article{Browning1997,
-  author = {Browning, N.D. and Wallis, D.J. and Nllist, P.D. and Pennycook, S.J.},
-  title = {{EELS} in the {STEM}: Determination of Materials Properties on the Atomic Scale},
-  journal = {Micron},
-  year = {1997},
-  volume = {28},
-  pages = {333}
-}
-@article{Gipson2007,
-  author = {Gipson, B. and Zeng, X. and Zhang, Z.Y. and Stahlberg, H.},
-  title = {2dx - User-friendly image processing for 2D crystals},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {64-72}
-}
-@article{Oho1997,
-  author = {Oho, E. and Hoshino, Y. and Ogashiwa, T.},
-  title = {New Generation Scanning Electron Microscopy Technology Based on the Concept of Active Image Processing},
-  journal = {Scanning},
-  year = {1997},
-  volume = {19},
-  number = {7},
-  pages = {483-488}
-}
-@article{Penczek2002,
-  author = {Penczek, P.A.},
-  title = {Three-dimensional spectral signal-to-noise ratio for a class of reconstruction algorithms},
-  journal = {Journal of Structural Biology},
-  year = {2002},
-  volume = {138},
-  pages = {34-46}
-}
-@article{Gu2003,
-  author = {Gu, Y. and Zhou, Z.H. and McCarthy, D.B. and Reed, L.J. and Stoops, J.K.},
-  title = {3D electron microscopy reveals the variables deposition and protein dynamics of the peripheral pyruvate dehydrogenase component about the core},
-  journal = {Proceedings of the National Academy of Sciences of the United States of America},
-  year = {2003},
-  volume = {100},
-  number = {23},
-  pages = {7015-7020}
-}
-@article{Bouwer2004,
-  author = {Bouwer, J.C. and Mackey, M.R.and Lawrence, A. and Deerinck, T.J. and Jones, Y.Z. and Terada, M. and Martone, M.E. and Peltier, S. and Ellisman, M.H.},
-  title = {Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement},
-  journal = {Journal of Structural Biology},
-  year = {2004},
-  volume = {148},
-  pages = {297-306}
-}
-@article{Hell2007,
-  author = {Hell, S.W.},
-  title = {Far-Field Optical Nanoscopy},
-  journal = {Science},
-  year = {2007},
-  volume = {316},
-  pages = {1153-1158}
-}
-@techreport{Bosch2004,
-  author = {Bosch, E.G.T.},
-  title = {The use of mutual information in image registration},
-  year = {2004},
-  number = {PR-TN-2004/00364},
-  address = { Eindhoven, The Netherlands},
-  institution = {Philips Research},
-  type = {Technical Note}
-}
-@article{Kunji2001,
-  author = {Kunji, E.R.S. and Spudich, E.N. and Grisshammer, R. and Henderson, R. and Spudich, J.L.},
-  title = {Electron Crystallographic Analysis of Two-Twodimensional Crystals of Sensory Rhodopsin II:A 6.9 {\AA} Projection Structure},
-  journal = {Journal of Molecular Biology},
-  year = {2001},
-  volume = {308},
-  pages = {279-293}
-}
-@article{Reichenbach1991,
-  author = {Reichenbach, S.E. and Park, S.K. and Narayanswamy, R.},
-  title = {Characterizing digital image acquisition devices},
-  journal = {Optical Engineering},
-  year = {1991},
-  volume = {30},
-  pages = {170-177}
-}
-@article{Bos1993,
-  author = {Bos, A. van den and Swarte, J.H.},
-  title = {Resolvability of the parameters of multiexponentials and other sum models},
-  journal = {IEEE Transactions of Signal Processing},
-  year = {1993},
-  volume = {41},
-  pages = {313-322}
-}
-@article{Gu2007,
-  author = {Gu, L. and Srot, V. and Sigle, W. and Koch, C. and Aken, P. van and Scholz, F. and Thapa, S.B. and Kirchner, C. and Jetter, M. and Ruehle, M.},
-  title = {Band-gap measurements of direct and indirect semiconductors using monochromated electrons},
-  journal = {Physical Review B},
-  year = {2007},
-  volume = {75},
-  pages = {195214}
-}
-@article{Kisielowski2008,
-  author = {Kisielowski, C.},
-  title = {Detection of Single Atoms and Buried Defects in Three Dimensions by Aberration-Corrected Electron Microscope with 0.5-AA Information Limit},
-  journal = {Microscopy and Microanalysis},
-  year = {2008},
-  volume = {14},
-  pages = {469-477}
-}
-@article{Nellist2006,
-  author = {Nellist, P.D. and behan, G. and Kirkland, A.I. and Hetherington, C.J.D.},
-  title = {Confocal operation of a transmission electron microscope with two aberration correctors},
-  journal = {Applied Physics Letters},
-  year = {2006},
-  volume = {89},
-  pages = {124105}
-}
-@article{Scheres2005,
-  author = {Scheres, S.H.W. and Valle, M. and Carazo, J.-M.},
-  title = {Fast maximum-likelihood refinement of electron microscopy images},
-  journal = {Bioinfomatics},
-  year = {2005},
-  volume = {21 S2},
-  pages = {ii243-ii244}
-}
-@article{Girit2009,
-  author = {Girit, C.O. and Meyer, J.C. and Erni, R.and Rossel, M.D. and Kisielowski, C. and Yang, Li. and Park, C.-H. and Crommie, M.F. and Cohen, M.L. and Louie, S.G. and Zettl, A.},
-  title = {Graphene at the Edge: Stability and Dynamics},
-  journal = {Science},
-  year = {2009},
-  volume = {323},
-  pages = {1705-1707}
-}
-@article{Yamazaki2005,
-  author = {Yamazaki, T. and Kotaka, Y. and Kikuchi, Y. and Watanabe, K.},
-  title = {Precise measurement of third-order spherical aberration using low-order zone-axis {Ronchigrams}},
-  journal = {Ultramicroscopy},
-  year = {2005},
-  note = {in press}
-}
-@article{Ronchi1964,
-  author = {Ronchi, V.},
-  title = {Forty years of history of a grating interferometer},
-  journal = {Applied Optics},
-  year = {1964},
-  volume = {3},
-  number = {4},
-  pages = {437-452}
-}
-@article{Lorusso2003,
-  author = {Lorusso, G.F. and Joy, D.C.},
-  title = {Experimental Resolution Measurement in Critical Dimension Scanning Electron Microscope Metrology},
-  journal = {Scanning},
-  year = {2003},
-  volume = {25},
-  number = {4},
-  pages = {175-180}
-}
-@article{Yin2003,
-  author = {Yin, Z. and Zheng, Y. and Doerschuk, P.C. and Nararajan, P. and Johnson, J.E.},
-  title = {A statistical approach to computer processing of cryo-electron microscope images: virion classification and {3-D} reconstruction},
-  journal = {Journal of Structural Biology},
-  year = {2003},
-  volume = {144},
-  pages = {24-50}
-}
-@article{Bammes2009,
-  author = {Bammes, B.E. and Jakana, J. and Schmid, M.F. and Chiu, W.},
-  title = {Radiation damage effects at four specimen temperatures from 4 K to 100 K},
-  journal = {Journal of Structural Biology},
-  year = {2009}
-}
-@article{Shao1988,
-  author = {Shao, Z.},
-  title = {On the fifth order aberration in a sextupole corrected probe forming system},
-  journal = {Rev. Sci. Instrum.},
-  year = {1988},
-  volume = {59},
-  number = {11},
-  pages = {2428-2437}
-}
-@article{Haas1999,
-  author = {Haas, F. de and Paatero, A.O. and Mindich, L. and Bamford, D.H. and Fuller, S.D.},
-  title = {A Symmetry Mismatch at the Site of {RNA} Packaging in the Polymerase Complex of {dsRNA} Bacteriophage $\phi$6},
-  journal = {Journal of Molecular Biology},
-  year = {1999},
-  volume = {294},
-  pages = {357-372}
-}
-@article{Glaeser2004,
-  author = {Glaeser, R.M. and Downing, K.H.},
-  title = {Specimen charging on thin films with one conducting layer: discussion of physical principles},
-  journal = {Microscopy and Microanalysis},
-  year = {2004},
-  volume = {10},
-  pages = {790-796}
-}
-@article{Takai2006,
-  author = {Takai, Y. and Nomaguchi, T. and Matsushita, S. and Kimura, Y.},
-  title = {Molecular-scale imaging of unstained deoxyribonucleic acid fibers by phase transmission electron microscopy},
-  journal = {Applied Physics Letters},
-  year = {2006},
-  volume = {89},
-  pages = {133903}
-}
-@article{Gabashvili2000,
-  author = {Gabashvili, I.S. and Agrawal, R.K. and Spahn, C.M.T. and Gracssucci, R.A. and Svergun, D.I. and Frank, J. and Penczek, P.},
-  title = {Solution Structure of the {E. coli} {70S} Ribosome at 11.5{\AA} Resolution},
-  journal = {Cell},
-  year = {2000},
-  volume = {100},
-  pages = {537-549}
-}
-@article{Kabius2009,
-  author = {Kabius, B. and Hartel, P. and Haider, M. and {M\"uller}, H. and Uhlemann, S. and Loebau, U. and Zach, J. and Rose, H.},
-  title = {First application of Cc-corrected imaging for high-resolution and energy-filtered TEM},
-  journal = {Journal Of Electron Microscopy},
-  year = {2009},
-  volume = {1},
-  pages = {1-9}
-}
-@article{Rose1977,
-  author = {Rose, H.},
-  title = {Nonstandard imaging methods in electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {1977},
-  volume = {2},
-  pages = {251-267}
-}
-@article{HohmannMarriott2009_SI,
-  author = {Hohmann-Marriott, M.F. and Sousa, A.A. and Azari, A.A. and Glushakova, S. and Zhang, G. and Zimmerberg, J. and Leapmann, R.D.},
-  title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography},
-  journal = {Nature Methods},
-  year = {2009},
-  volume = {6},
-  number = {10},
-  pages = {729-732},
-  note = {Supplementary Information}
-}
-@article{Zhu2009,
-  author = {Zhu, Y. and Inada, H. and Nakamura, K. and Wall, J.},
-  title = {Imaging single atoms using secondary electrons with an aberration-corrected electron microscope},
-  journal = {Nature Methods},
-  year = {2009},
-  volume = {8},
-  pages = {808-811}
-}
-@article{Pennycook1988,
-  author = {Pennycook, S.J. and Boatner, L.A.},
-  title = {Chemically Sensitive Structure Imaging with a Scanning Transmission Electron Microscope},
-  journal = {Nature},
-  year = {1988},
-  volume = {336},
-  pages = {565}
-}
-@article{Lehmann1999,
-  author = {Lehmann, M. and Lichte, H. and Geiger, D. and Lang, G. and Schweda, E.},
-  title = {Electron Holography at atomic dimensions - present state},
-  journal = {Materials Characterization},
-  year = {1999},
-  volume = {42},
-  pages = {249-263}
-}
-@article{Zuo2003,
-  author = {Zuo, J.M. and Vartanyants, I. and Gao, M. and Zhang, R. and Nagahara, L.A.},
-  title = {Atomic Resolution Imaging of a Carbon Nanotube from Diffraction Intensities},
-  journal = {Science},
-  year = {2003},
-  volume = {300},
-  pages = {1419-1421}
-}
-@article{Sousa2009,
-  author = {Sousa, A.A. and Hohmann-Marriott, M.F. and Zhang, G. and Leapman, R.D.},
-  title = {Monte Carlo electron-trajectory simulations in bright-field and dark-field STEM:Implications for tomography of thick biological sections},
-  journal = {Ultramicroscopy},
-  year = {2009},
-  volume = {109},
-  pages = {213-221}
-}
-@article{Downing1975,
-  author = {Downing, K.H. and Siegel, B.M.},
-  title = {Discrimination of Heavy and Ligth Components in Electron Microscopy Using Single-Sideband Holographic Techniques},
-  journal = {Optik},
-  year = {1975},
-  volume = {42},
-  pages = {155-175}
-}
-@article{Takeguchi2008,
-  author = {Takeguchi, M. and Hasimoto, A. and Shimojo, M. and Mitsuishi, K. and Furuya, K.},
-  title = {Development of a stage-scanning system for high-resolution confocal STEM},
-  journal = {Journal of Electron Microscopy},
-  year = {2008},
-  volume = {57},
-  pages = {123-127}
-}
-@article{Nottbohm2008,
-  author = {Nottbohm, C.T. and Beyer, A. and Sologubenko, A.S. and Ennen, I. and {H\"utten}, A. and {R\"osner}, H. and Eck, W. and Mayer, J. and {G\"olzh\"auser}},
-  title = {Novel carbon nanosheets as support for ultrahigh-resolution structural analysis of nanoparticles},
-  journal = {Ultramicroscopy},
-  year = {2008},
-  volume = {108},
-  pages = {885-892}
-}
-@article{Mitterbauer2003,
-  author = {Mitterbauer, C. and Kothleitner, G. and Grogger, W. and Zandbergen, H. and Freitag, B. and Tiemeijer, P.C. and Hofer, F.},
-  title = { Electron energy-loss near-edge structures of 3d transition metal oxides recorded at high-energy resolution},
-  journal = {Ultramicroscopy},
-  year = {2003},
-  volume = {96},
-  pages = {469-480}
-}
-@article{Morniroli1992,
-  author = {Morniroli, J.P. and Steeds, J.W.},
-  title = {Microdiffratction as a tool for crystal structure identification and determination},
-  journal = {Ultramicroscopy},
-  year = {1992},
-  volume = {45},
-  pages = {219-239}
-}
-@article{Hetherington2008,
-  author = {Hetherington, C.J.D. and Chang, L.Y.S. and Haigh, S. and Nellist, P.D. and Gontard, L.C. and Dunin-Borkowski, R.E. and Kirkland, A.I.},
-  title = {High-Resolution TEM and the Application of Direct and Indirect Aberration Correction},
-  journal = {Microscopy and Microanalysis},
-  year = {2008},
-  volume = {14},
-  pages = {60-67}
-}
-@article{Hartwell1999,
-  author = {Hartwell, L.H. and Hopfield, J.J. and Leibler, S. and Murray, A.M.},
-  title = {From molecular to modular cell biology},
-  journal = {Nature},
-  year = {1999},
-  volume = {402},
-  pages = {C47-C50}
-}
-@article{Uno2005,
-  author = {Uno, S. and Honda, K. and Nakamura, N. and Matsuya, M. and Zach, J.},
-  title = {Aberration correction and its automatic control in scanning electron microscopes},
-  journal = {Optik},
-  year = {2005},
-  volume = {116},
-  pages = {438-448}
-}
-@article{Joy2002,
-  author = {Joy, D.C.},
-  title = {{SMART}- a programm to measure {SEM} resolution and imaging performance},
-  journal = {Journal of Microscopy},
-  year = {2002},
-  volume = {208},
-  number = {1},
-  pages = {24-34}
-}
-@article{Danev2006,
-  author = {Danev, R. and Nagayama, K.},
-  title = {Applicability of thin film phase plates in biological electron microscopy},
-  journal = {Biophysics},
-  year = {2006},
-  volume = {2},
-  pages = {35-43}
-}
-@article{Malac2006,
-  author = {Malac, M. and Beleggia, M. and Egerton, R. and Zhu, Y.},
-  title = {Bright-field {TEM} imaging of single molecules: Dream or near future?},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {107},
-  pages = {40-49}
-}
-@article{Harutyunyan2009,
-  author = {Harutyunyan, A.R. and Chen, G. and Paronyan, T.M. and Pigos, E.M. and Kuznetsov, O.A. and Hewaparakrama, K. and Kim, S.M. and Zakharov, D. and Stach, E.A. and Sumanasekera, G.U.},
-  title = {Preferential Growth of Single-Walled Carbon Nanotubes with Metallic Conductivity},
-  journal = {Science},
-  year = {2009},
-  volume = {326},
-  pages = {116-120}
-}
-@article{Yan2007,
-  author = {Yan, X. and Sinkovits, R.S. and Baker, T.S.},
-  title = {AUTO3DEM - an automated and high throughput program for image reconstruction of icosahedral particles},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {73-82}
-}
-@article{Buban2009,
-  author = {Buban, J.P. and Ramasse, Q. and Gipson, B. and Browning, N.D. and Stahlberg, H.},
-  title = {High-resolution low-dose scanning transmission electron microscopy},
-  journal = {Journal of Electron Microscopy},
-  year = {2009},
-  pages = {1-10}
-}
-@article{Bleloch2004,
-  author = {Bleloch, A. and Lupini, A. },
-  title = {Imaging at the picometer scale},
-  journal = {Materials Today},
-  year = {2004},
-  pages = {42-48}
-}
-@article{Nelayah2009,
-  author = {Nelayah, J. and Gu, L. and Sigle, W. and Koch, C.T. and Pastoriza-Santos, I. and Liz-Marzan, L.M. and Aken, P.A. van},
-  title = {Direct imaging of surface plasmon resonances on single triangular silver nanoprisms at optical wavelength using low-loss EFTEM imaging},
-  journal = {Optics Letters},
-  year = {2009},
-  volume = {34},
-  number = {7},
-  pages = {1003-1005}
-}
-@article{Penrose1956,
-  author = {Penrose, R.},
-  title = {On best approximate solution of linear matrix equations},
-  journal = {Proceedings of the Cambridge Philosophical Society},
-  year = {1956},
-  volume = {52},
-  pages = {17-19}
-}
-@article{Buczko2000,
-  author = {Buczko, R. and Duscher, G. and Pennycook, S>J. and Pantelides, S.T.},
-  title = {Excitonic Effects in Core-Excitation Spectra of Semiconductors},
-  journal = {Physical Review Letters},
-  year = {2000},
-  volume = {85},
-  pages = {2168}
-}
-@article{Penrose1955,
-  author = {Penrose, R.},
-  title = {A generalized inverse for matrices},
-  journal = {Proceedings of the Cambridge Philosophical Society},
-  year = {1955},
-  volume = {51},
-  pages = {406-413}
-}
-@article{Cooper2007,
-  author = {Cooper, D. and Truche, R. and Rivallin, P. and Hartmann, J.-M. and Laugier, F. and Bertin, F. and Chabli, A. and Rouviere, J.-L.},
-  title = {Medium resolution off-axis electron holography with mV sensitivity},
-  journal = {Applied Physics Letters},
-  year = {2007}
-}
-@article{Frank2009,
-  author = {Frank, J.},
-  title = {Single-particle reconstructionof biological macromolecules in electron microscopy - 30 years},
-  journal = {Quaterly Reviews of Biophysics},
-  year = {2009},
-  volume = {42},
-  number = {3},
-  pages = {139-158}
-}
-@book{Bronstein1991,
-  author = {Bronstein, I.N. and Semendjajew, K.A.},
-  title = {Taschenbuch der Mathematik},
-  year = {1991},
-  publisher = {Teubner},
-  address = {Thun, Frankfurt (Main)},
-  edition = {25th}
-}
-@article{Krivanek2008a,
-  author = {Krivanek, O.L. and Delby, N. and keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.},
-  title = {Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy},
-  journal = {Advances in Imaging and Electron Physics},
-  year = {2008},
-  volume = {153},
-  pages = {121-160}
-}
-@article{Nellist2000,
-  author = {Nellist, P.D. and Pennycook, S.J.},
-  title = {The principles and interpretation of annular dark-field z-contrast imaging},
-  journal = {Advances in Imaging and Electron Physics},
-  year = {2000},
-  volume = {113},
-  pages = {147-203},
-  note = {Copy Bernd,Rolf}
-}
-@article{Chu2009a,
-  author = {Chu, M.-W. et al.},
-  title = {Probing surface plasmons in individual Ag nanoparticles in the ultra-violet spectral regime},
-  journal = {Nanotechnology},
-  year = {2009},
-  volume = {20},
-  pages = {235705}
-}
-@article{Boisset1997,
-  author = {Boisset, N. and Penczek, P.A. and Taveau, J-C. and You, V. and Haas, F. de and Lamy, J.},
-  title = {Effects of angular oversampling in three-dimensional reconstruction},
-  journal = {Scanning Microscopy},
-  year = {1997},
-  volume = {11},
-  pages = {131-145}
-}
-@article{Vincent1994,
-  author = {Vincent, R. and Midgley, P.A.},
-  title = {Double concial beam-rocking system for measurement of integrated electron diffreation intensities},
-  journal = {Ultramicroscopy},
-  year = {1994},
-  volume = {53},
-  pages = {271-282}
-}
-@article{Scheres2005a,
-  author = {Scheres, S.H.W. and Valle, M. and {Nu\~nez}, R. and Sorzano, C.O.S. and Marabini, R. and Herman, G.T. and Carazo, J.-M.},
-  title = {Maximum-likelihood Multi-reference Refinement for Electron Microscopy Images},
-  journal = {Journal of Molecular Biology},
-  year = {2005},
-  volume = {348},
-  pages = {139-149}
-}
-@article{Cowley2001,
-  author = {Cowley, J.M.},
-  title = {{STEM} imaging with a thin annular detector},
-  journal = {Journal of Electron Microscopy},
-  year = {2001},
-  volume = {50},
-  number = {3},
-  pages = {147-155}
-}
-@article{Uhlemann1996,
-  author = {Uhlemann, S. and Rose, H.},
-  title = {Acceptance of imaging energy filters},
-  journal = {Ultramicroscopy},
-  year = {1996},
-  volume = {63},
-  pages = {161-167}
-}
-@article{Frank1981,
-  author = {Frank, J. and Verschoor, A. and Boublik, M.},
-  title = {Computer Averaging of Electron Micrographs of 40S Ribosomal Subunits},
-  journal = {Science},
-  year = {1981},
-  volume = {214}
-}
-@article{Maccagnano-Zacher2008,
-  author = {Maccagnano-Zacher, S.E. and Mkhoyan, K.A. and Kirkland, E.J. and Silcox, J.},
-  title = {Effects of tilt on high-resolution ADF-STEM imaging},
-  journal = {Ultramicroscopy},
-  year = {2008},
-  volume = {187},
-  pages = {718-726}
-}
-@article{Gubbens2010,
-  author = {Gubbens, A. and Barfels, M. and Trevor, C. and Twesten, R. and Mooney, P. and Thomas, P. and Menon, N. and Kraus, B. and Mao, C. and Mcginn, B.},
-  title = {The GIF quantum, a next generation post-column imaging energy filter},
-  journal = {Ultramicroscopy},
-  year = {2010}
-}
-@article{James1999,
-  author = {James, E.M. and Browning, N.D.},
-  title = {Practical aspects of atomic resolution imaging and analysis in {STEM}},
-  journal = {Ultramicroscopy},
-  year = {1999},
-  volume = {78},
-  pages = {125-139}
-}
-@article{Du2007,
-  author = {Du, K. and Hochmeister, K. von and Philipp, F.},
-  title = {Quantitative comparison of image contrast and pattern between experimental and simulated high-resolution transmission electron micrographs},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {107},
-  pages = {281-292}
-}
-@article{Krivanek1991,
-  author = {Krivanek, O.L. and Gubbens, A.J. and Dellby, N.},
-  title = {Developments in EELS instrumentation for spectroscopy and imaging},
-  journal = {Mirosc. Mircoanal. Microstruct},
-  year = {1999},
-  volume = {2},
-  pages = {315-332}
-}
-@article{Moore1920,
-  author = {Moore, E.H.},
-  title = {On the reciprocal of the general algebraic matrix},
-  journal = {Bulletin of the American Mathematical Society},
-  year = {1920},
-  volume = {26},
-  pages = {394-395}
-}
-@article{James1997,
-  author = {James, E.M. and Rodenburg, J.M},
-  title = {A method for measuring the effective source coherence in a field emission transmission electron microscope},
-  journal = {Applied Surface Science},
-  year = {1997},
-  volume = {111},
-  pages = {174-179}
-}
-@article{Davey2002,
-  author = {Davey, C.A. and Richmond, T.J.},
-  title = {{DNA}-dependent divalent cation binding in the nucleosome core particle},
-  journal = {Proceedings of the National Academy of Sciences of the United States of America},
-  year = {2002},
-  volume = {99},
-  pages = {11169-11174}
-}
-@article{Kisielowski2001,
-  author = {Kisielowski, C. and Hetherington, C.J.D. and Wang, Y.C. and Kilaas, R. and O'keefe, M.A. and Thust, A.},
-  title = {Imaging columns of the light elements carbon,nitrogen and oxygen with sub {\AA}ngstrom resolution},
-  journal = {Ultramicroscopy},
-  year = {2001},
-  volume = {89},
-  pages = {243-263}
-}
-@article{Chu2009,
-  author = {Chu, M.-W. and Myroshnchenko, V. and Chen, C.H. and Deng, J.-P. and Mou, C.-Y. and Garcia de Abajo, F.J.G.},
-  title = {Crystal Structure of the {30S} Ribosomal Subunit from Thermus thermophilus: Purification, Crystallization and Structure Determination},
-  journal = {Journal of Molecualar Biology},
-  year = {2009}
-}
-@article{Chu2008,
-  author = {Chu, M.-W. and Chen, C.-H. and Garcia de Abajo, F.J.G. and Deng, J.-P. and Mou, C.-Y.},
-  title = {Surface exciton polaritons in individual Au nanoparticles in the far-ultraviolet spectral regime},
-  journal = {Physical Review B},
-  year = {2008},
-  volume = {77},
-  pages = {245402}
-}
-@article{Duscher2001,
-  author = {Duscher, G. and Buczko, R. and Pennycook, S.J. and Pantelides, S.T.},
-  title = {Core-Hole Effects on Energy-Loss Near-Edge Structure},
-  journal = {Ultramicroscopy},
-  year = {2001},
-  volume = {86},
-  pages = {355}
-}
-@article{Hytch1998,
-  author = {Hytch, M.J. and Snoeck, E. and Kilaas, R.},
-  title = {Quantitative measurement of displacement and strain fields from HREM micrographs},
-  journal = {Ultramicroscopy},
-  year = {1998},
-  volume = {74},
-  pages = {131-146}
-}
-@article{Lazar2006,
-  author = {Lazar, S. and Botton, G.A. and Zandbergen, H.W.},
-  title = {Enhancement of resolution in core-loss and low-loss spectroscopy in a monochromated microscope},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {106},
-  pages = {1091-1103}
-}
-@article{Bullogh1999,
-  author = {Bullough, P.A. and Henderson, R.},
-  title = {The Projection Structure of the Low Temperature K Intermediate of the Bacteriorhodopsin Photocycle D etermined by Electron Diffraction},
-  journal = {Journal of Molecular Biology},
-  year = {1999},
-  volume = {286},
-  pages = {1663-1671}
-}
-@article{Rohde2005,
-  author = {Rohde, G.K. and Barnett, A.S. and Basser, P.J. and Pierpaoli, C.},
-  title = {Estimating intensity variance due to noise in registered images: Applications to diffusion tensor {MRI}},
-  journal = {NeuroImage},
-  year = {2005},
-  volume = {26},
-  pages = {673-684}
-}
-@article{Lichte2008a,
-  author = {Lichte, H. and Lehmann, M.},
-  title = {Electron holography - basics and applications},
-  journal = {Reports on Progress in Physics},
-  year = {2008},
-  pages = {1-43}
-}
-@article{HohmannMarriott2009,
-  author = {Hohmann-Marriott, M.F. and Sousa, A.A. and Azari, A.A. and Glushakova, S. and Zhang, G. and Zimmerberg, J. and Leapmann, R.D.},
-  title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography},
-  journal = {Nature Methods},
-  year = {2009},
-  volume = {6},
-  number = {10},
-  pages = {729-732}
-}
-@article{Sawada2009a,
-  author = {Sawada, H. and Tanishiro, Y. and Ohashi, N. and Tomita, T. and Hosokawa, F. and Kaneyama, T. and Kondo, Y. and Takayanagi, K.},
-  title = {STEM imaging of 47-pm-separated atomic columns by a spherical aberration-corrected electron microscope with a 300-kV cold field emission gun},
-  journal = {Journal of electron microscopy},
-  year = {2009},
-  volume = {58},
-  pages = {357-361}
-}
-@article{Kim1997,
-  author = {Kim, H.S. and Yu, M.L. and Thomson, M.G.R. and Kratchmer, E. and Chang, T.H.P.},
-  title = {Energy distributions of Zr/O/W Schottky electron emission},
-  journal = {Journal of Applied Physics},
-  year = {1997},
-  volume = {81},
-  pages = {461-465}
-}
-@article{Baldock2002,
-  author = {Baldock, C. and Gilpin, C.J. and Koster, A.J. and Ziese, U. and Kadler, K.E. and Kielty, C.M. and Holmes, D.F.},
-  title = {Three-dimensional reconstructions of extracellular matrix polymers using automated electron tomography},
-  journal = {Journal of Structural Biology},
-  year = {2002},
-  volume = {138},
-  pages = {130-136}
-}
-@article{Grigorieff1996,
-  author = {Grigorieff, N. and Ceska, T.A. and Downing, K.H. and Baldwin, J.M. and Henderson, R.},
-  title = {Electron-crystallographic Refinement of the Structure of Bacteriorhopdopsin},
-  journal = {Journal of Molecular Biology},
-  year = {1996},
-  volume = {259},
-  pages = {393-421}
-}
-@article{Heel1987,
-  author = {Heel, M. van},
-  title = {Similarity measures between images},
-  journal = {Ultramicroscopy},
-  year = {1987},
-  volume = {21},
-  pages = {95-100}
-}
-@article{Akase2010,
-  author = {Akase, Z. and Shindo, D.},
-  title = {In situ Lorentz microscopy in an alternating magnetic field},
-  journal = {Journal of Electron Microscopy},
-  year = {2010},
-  pages = {1-75}
-}
-@article{Xiong2009,
-  author = {Xiong, Q. and Morphew, M.K. and Schwartz, C.L. and Hoenger, A.H. and Mastronarde, D.N.},
-  title = {CTF determination and correction for low dose tomographic tilt series},
-  journal = {Journal of Structural Biology},
-  year = {2009},
-  volume = {168},
-  pages = {378-387}
-}
-@article{Unser1987,
-  author = {Unser, M. and Trus, B.L. and Steven, A.C.},
-  title = {A new resolution criterion based on spectral signal-to-noise ratio},
-  journal = {Ultramicroscopy},
-  year = {1987},
-  volume = {23},
-  pages = {39-52}
-}
-@article{Morniroli2007,
-  author = {Morniroli, J.P. and Houdellier, F. and Roucau, C. and Puiggali, J. and Gesti, S. and Redjaimia, A.},
-  title = {LACDIF, a new electron diffraction technique obtained with the LACBED configuration and a Cs corrector: Comparison with electron precession},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {108},
-  pages = {100-115}
-}
-@article{Fu1999,
-  author = {Fu, J. and Gnatt, A.L. and Bushnell, D.A. and Jensen, G.J. and Thompson, N.E. and Burgess, R.R. and David, P.R. and Kornberg, R.D.},
-  title = {Yeast {RNA} Polymerase {II} at 5{\AA} Resolution},
-  journal = {Cell},
-  year = {1999},
-  volume = {98},
-  pages = {799-810}
-}
-@article{Stadelmann1987,
-  author = {Stadelmann, P.A.},
-  title = {{EMS} - {A} software package for electron diffration analysis and {HREM} image simulation in material science},
-  journal = {Ultramicroscopy},
-  year = {1987},
-  volume = {21},
-  pages = {131-146}
-}
-@inproceedings{Pennycook2003a,
-  author = {Pennycook, S.J. and Lupini, A.R. and Borisevich, A. and Varela, M. and Peng, Y. and Nellist, P.D. and Duscher, G. and Buczko, R. and Pantelides, S.T.},
-  title = {Transmission Electron Microscopy: Overview and Challenges},
-  year = {2003},
-  volume = {683},
-  pages = {627},
-  publisher = {American Institute of Physics},
-  series = {AIP Conference},
-  booktitle = {Characterization and Metrology for ULSI Technology}
-}
-@article{Ronchi1961,
-  author = {Ronchi, V.},
-  title = {Resolving power of calculates and detected images},
-  journal = {Journal of the Optical Society of America},
-  year = {1961},
-  volume = {51},
-  pages = {458-460}
-}
-@article{Philippsen2007,
-  author = {Philippsen, A. and Engel, H.-A. and Engel, A.},
-  title = {The contrast-imaging function for tilted specimens},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {107},
-  pages = {202-212}
-}
-@article{Haurauz1986,
-  author = {Haurauz, G. and Heel, M. van},
-  title = {Exact filters for general geometry three dimensional reconstruction},
-  journal = {Optik},
-  year = {1986},
-  volume = {78},
-  pages = {146-156}
-}
-@article{Walther2006,
-  author = {Walther, T. and Quandt, E. and Stegmann, H. and Thesen, A. and Benner, G.},
-  title = {First experimental test of a new monochromated and aberration-corrected 200 {kV} field-emission scanning transmission electron microscope},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {106},
-  pages = {963-969}
-}
-@article{Muller2006a,
-  author = {{M\"uller}, H. and Uhlemann, S. and Hartel, P. and Haider, M.},
-  title = {Advancing the Hexapole Cs-Corrector for the Scanning Transmission Electron Microscope},
-  journal = {Microscopy and Microanalysis},
-  year = {2006},
-  volume = {12},
-  pages = {442-455}
-}
-@article{Aoyama2008,
-  author = {Aoyama, K. and takagi, T. and Hirase, A. and Miyazawa, A.},
-  title = {STEM tomography for thick biological specimens},
-  journal = {Ultramicroscopy},
-  year = {2008},
-  volume = {109},
-  pages = {70-80}
-}
-@techreport{Zande2004,
-  author = {Zande, M.J. van der and Kok, C.},
-  title = {Aberration analysis in electron microscopy ({T}heory)},
-  year = {2004},
-  number = {PR-TN-2004/00608},
-  address = { Eindhoven, The Netherlands},
-  institution = {Philips Research},
-  type = {Technical Note}
-}
-@article{Shibata2004,
-  author = {Shibata, N. and Pennycook, S.J. and Gosnell, T.R. and Painter, G.S. and Shelton, W.A. and Becher, P.F.},
-  title = {Observation of rare-earth segregation in silicon nitride ceramics at subnanometre dimensions},
-  journal = {Nature},
-  year = {2004},
-  volume = {428},
-  pages = {730-734}
-}
-@article{DeRosier1999,
-  author = {DeRosier, D. and Stokes, D.L. and Darst, S.A.},
-  title = {Averaging Data Derived from Images of Helical Structures with Different Symmetries},
-  journal = {Journal of Molecular Biology},
-  year = {1999},
-  volume = {289},
-  pages = {159-165}
-}
-@article{Crozier2006,
-  author = {Crozier, P.A.},
-  title = {Book review: Transmission Electron Energy Loss Spectrometry in Materials Science and the EELS Atlas},
-  journal = {Micron},
-  year = {2006},
-  volume = {38},
-  pages = {332}
-}
-@article{Carlo2002,
-  author = {Carlo, S. de and El-Bez, C. and Alvarez-Rua, C. and Borge, J. and Dubochet, J.},
-  title = {Cryo-negative staining reduces electron-beam sensitivity of vitrified biological particles},
-  journal = {Journal of Structural Biology},
-  year = {2002},
-  volume = {138},
-  pages = {216-222}
-}
-@inproceedings{Tiemeijer1999a,
-  author = {Tiemeijer, P.C.},
-  title = {Operation modes of a {TEM} monochromator},
-  year = {1999},
-  volume = {161},
-  pages = {191-196},
-  publisher = {IOP Publishing Ltd},
-  series = {Electron Microscopy and Analysis Group Conference EMAG99},
-  address = {Sheffiled, UK}
-}
-@article{Thust2009,
-  author = {Thust, A.},
-  title = {High-Resolution Transmission Electron Microscopy on an Absolute Contrast Scale},
-  journal = {Physical Review Letters},
-  year = {2009},
-  volume = {102},
-  pages = {220801}
-}
-@article{Suenaga2009,
-  author = {Suenaaga, K. and Sato, Y. and Liu, Z. and kataura, H. and Okazaki, T. and Kimoto, K. and Sawada, H. and Sasaki, T. and Omoto, K. and Kaneyama, T. and Kondo, Y.},
-  title = {Visualizing and identifying single atoms using electron energy-loss spectroscopy with low accelerating voltage},
-  journal = {Nature Chemistry},
-  year = {2009},
-  pages = {1-4}
-}
-@article{Hill2008,
-  author = {Hill, R.and Notte, J. and Ward, B.},
-  title = {The ALIS He ion source and its application to high resolution microscopy},
-  journal = {Physics Procedia},
-  year = {2008},
-  volume = {1},
-  pages = {135-141}
-}
-@article{Hohn2007,
-  author = {Hohn, M. and Tang, G. and Goodyear, G. and Baldwin, P.R. and Huang, Z. and Penczek, P.A. and Yang, C. and Glaeser, R.M. and Adama, P.D. and Ludtke, S.J.},
-  title = {SPARX, a new environment for Cryo-EM image processing},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {47-55}
-}
-@article{Tang2007,
-  author = {Tang, G. and Peng, L. and Baldwin, P.R. and Mann, D.S. and Jiang, W. and Rees, I. and Ludtke, S.J.},
-  title = {EMAN2: An extensible image processing suite for electron microscopy},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {38-46}
-}
-@article{Krivanek2009,
-  author = {Krivanek, O.L. and Ursin, J.P. and Bacon, N.J. and Corbin, G.J. and Delby, N. and Hrncirik, P. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.},
-  title = {High-energy resolution monochromator for aberration-corrected scanning transmission electron microscopy/electron energy-loss spectroscopy},
-  journal = {Philosophical Transactions of the Royal Society},
-  year = {2009},
-  volume = {367},
-  pages = {3683-3697}
-}
-@article{Krivanek2008,
-  author = {Krivanek, O.L. and Corbin, G.K. and Dellby, N. and Elston, B.F. and Keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S. and Woodruff,J.W.},
-  title = {An electron microscope for the aberration-corrected era},
-  journal = {Ultramicroscopy},
-  year = {2008},
-  volume = {108},
-  pages = {179-195}
-}
-@article{Gunawan2009,
-  author = {Gunawan, L. and Lazar, S. and Gautreau, O. and Narnagea, C. and Pignolet, A. and Botton, G.A.},
-  title = {Locating La atoms in epitaxial $Bi_{3.25}La_{0.75}Ti_3O_{12}$ films through atomic resolution electron energy loss spectroscopy mapping},
-  journal = {Applied Physics Letters},
-  year = {2009},
-  volume = {95},
-  pages = {192902}
-}
-@misc{Krivanek2001,
-  author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.},
-  title = {Autoadjusting charged-particle probe-forming apparatus},
-  year = {2001},
-  organization = {NION},
-  howpublished = {EP application number: 01308443.9},
-  note = {pending}
-}
-@article{Cox1986,
-  author = {Cox, I.J. and Sheppard, C.J.R.},
-  title = {Information capacity and resolution in an optical system},
-  journal = {Journal of the Optical Society of America A},
-  year = {1986},
-  volume = {3},
-  pages = {1152-1158}
-}
-@article{Downing2004,
-  author = {Downing, K.H. and McCartney, M.R. and Glaeder, R.M.},
-  title = {Experimental characterization and mitigation of specimen charging on thin films with one conducting layer},
-  journal = {Microscopy and Microanalysis},
-  year = {2004},
-  volume = {10},
-  pages = {783-789}
-}
-@article{Hohenstein1992,
-  author = {Hohenstein, M.},
-  title = {Single Sideband Imagin in High-Resolution Electron Microscopy},
-  journal = {Applied Physics A},
-  year = {1992},
-  volume = {54},
-  pages = {485-492}
-}
-@article{Mitsuishi2006,
-  author = {Mitsuishi, K. and Takeguchi, M. and Kondo, Y. and Hosokawa, F. and Okamoto, K. and Sannomiva, T. and Hori, M. and Iwama, T.},
-  title = {Ultrahigh-Vacuum Third-Order Spherical Aberration (Cs) Corrector for a Scanning Transmission Electron Microscope},
-  journal = {Microscopy and Microanalysis},
-  year = {2006},
-  volume = {12},
-  pages = {1-5}
-}
-@article{Koster1987,
-  author = {Koster, A.J. and Bos, A. van den and Mast, K.D. van der},
-  title = {An autofocus method for a {TEM}},
-  journal = {Ultramicroscopy},
-  year = {1987},
-  volume = {21},
-  pages = {209-222}
-}
-@article{Egerton2003,
-  author = {Egerton, R.F.},
-  title = {New techniques in electron energy-loss spectroscopy and energy-filtered imaging},
-  journal = {Micron},
-  year = {2003},
-  volume = {34},
-  pages = {127-139}
-}
-@article{Egerton2004,
-  author = {Egerton, R.F. and Li, P. and Malac, M.},
-  title = {Radiation damage in the TEM and SEM},
-  journal = {Micron},
-  year = {2004},
-  volume = {35},
-  pages = {399-409}
-}
-@article{Egerton2007,
-  author = {Egerton, R.F.},
-  title = {Limits to the spatial, energy and momentum resolution of electron energy-loss spectroscopy},
-  journal = {Ultramicroscopy},
-  year = {2007},
-  volume = {107},
-  pages = {575-586}
-}
-@article{Egerton2009,
-  author = {Egerton, R.F.},
-  title = {Electron energy-loss spectroscopy in the TEM},
-  journal = {Reports on Progress in Physics},
-  year = {2009},
-  volume = {72},
-  pages = {016502}
-}
-@article{Baldwin1988,
-  author = {Baldwin, J.M. and Henderson, R. and Backman, E. and Zemlin, F.},
-  title = {Images of purple membrane at 2.8{\AA} resolution obtained by cryo-electron microscopy},
-  journal = {Journal of Molecular Biology},
-  year = {1988},
-  volume = {202},
-  pages = {585-591}
-}
-@article{Zhang2008,
-  author = {Zhang, X. and Settembre, E. and Xu. Chen, Dormitzer, P.R. and Bellamy, R. and Harrison, S.C. and Grigorieff, N.},
-  title = {Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction},
-  journal = {Proceedings of the National Academy of Science of America},
-  year = {2008},
-  volume = {105},
-  number = {6},
-  pages = {1867-1872}
-}
-@article{Downing1979,
-  author = {Downing, K.H.},
-  title = {Possibilities of heavy atom discrimination using single-sideband techniques},
-  journal = {Ultramicroscopy},
-  year = {1979},
-  volume = {4},
-  pages = {13-31}
-}
-@article{Zheng2007,
-  author = {Zheng, S.Q. and Kollman, J.M. and Braunfeld, M.B. and Sedat, J.W. and Agard, D.A.},
-  title = {Automated acquisition of electron microscopic random conical tilt sets},
-  journal = {Journal of Strcutural Biology},
-  year = {2007},
-  volume = {157},
-  pages = {148-155}
-}
-@article{Eyidi2006,
-  author = {Eyidi, D. and Hebert, C. and Schattschneider, P.},
-  title = {Short note on parallel illumination in the {TEM}},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {106},
-  pages = {1144-1149}
-}
-@article{Mallick2005,
-  author = {Mallick, S.P. and Carragher, B. and Potter, C.S. and Kriegman, D.J.},
-  title = {ACE: Automated CTF Estimation},
-  journal = {Ultramicroscopy},
-  year = {2005},
-  volume = {104},
-  pages = {8-29}
-}
-@article{Liu2009,
-  author = {Liu, K. and Schwind, G.A. and Swanson, L.W.},
-  title = {Off-axis emission properties for the extended Schottky electron source},
-  journal = {J. Vac. Sci. Technol. B},
-  year = {2009},
-  volume = {27},
-  pages = {2547-2552}
-}
-@article{Kirkland1987,
-  author = {Kirkland, E.J. and Loane, R.F. and Silcox, J.},
-  title = {Simulation of annular dark field {STEM} images using a modified mutlislice method},
-  journal = {Ultramicroscopy},
-  year = {1987},
-  volume = {23},
-  pages = {77-96}
-}
-@article{Sigworth1998,
-  author = {Sigworth, F.J.},
-  title = {A Maximum-Likelihood Approach to Single-Particle Image Refinement},
-  journal = {Journal of Structural Biology},
-  year = {1998},
-  volume = {122},
-  pages = {328-339}
-}
-@article{Harada2004,
-  author = {Harada, K. and Akashi, T. and Togawa, Y. and Matsuda, T.},
-  title = {Double-biprism electron interferometry},
-  journal = {Applied Physics Letters},
-  year = {2004},
-  volume = {84},
-  number = {17},
-  pages = {3219-3231}
-}
-@article{Mooney2007,
-  author = {Mooney, P..},
-  title = {Optimization of Image Collection for Cellular Electron Microscopy},
-  journal = {Methods in cell biology},
-  year = {2007},
-  volume = {79},
-  pages = {661-719}
-}
-@article{Brarnova1999,
-  author = {Baranova, L.A. and Yavor, S.Y.},
-  title = {The optics of round and multipole electrostatic lenses},
-  journal = {Advances in electronics and electron physics},
-  year = {2004},
-  volume = {76},
-  pages = {1-207}
-}
-@article{Kuramochi2008,
-  author = {Kurmochi, K. and Yamazaki, T. and Kotaka, Y. and Kikuchi, Y. and Hashimoto, I. and Watanabe, K.},
-  title = {Measurement of twofold astigmatism of probe-forming lens using low-order zone-axis ronchigram},
-  journal = {Ultramicroscopy},
-  year = {2008},
-  volume = {108},
-  pages = {339-345}
-}
-@article{Kuramochi2009,
-  author = {Kurmochi, K. and Yamazaki, T. and Kotaka, Y. and Ohtsuka, M. and Hashimoto, I. and Watanabe, K.},
-  title = {Effect of chromatic aberration on atomic-resolved spherical aberration corrected STEM images},
-  journal = {Ultramicroscopy},
-  year = {2009},
-  volume = {110},
-  pages = {36-42}
-}
-@article{Crewe1980,
-  author = {Crewe, A.V.},
-  title = {The physics of the high-resolution scanning microscope},
-  journal = {Rep. Prog. Phys.},
-  year = {1980},
-  volume = {43},
-  pages = {621-642}
-}
-@article{Haider2008,
-  author = {Haider, M. and Mueller, H. and Uhlemann, S.},
-  title = {Present and Future Hexapole Aberration Correctors for High-Resolution Electron Microscopy},
-  journal = {Advances in Imaging and Electron Physics},
-  year = {2008},
-  volume = {153},
-  pages = {43-119}
-}
-@article{Pogany1968,
-  author = {Pogany, A.P. and Turner, P.S.},
-  title = {Reciprocity in Electron Diffraction and Microscopy},
-  journal = {Acta Crystallography A},
-  year = {1968},
-  volume = {24},
-  pages = {103-109}
-}
-@article{Sasaki2010,
-  author = {Sasaki, T. and Sawada, H. and Hosokawa, F. and Kohno, Y. and Tomita, T. and Kaneyama, T. and Kondo, Y. and Kimoto, K. and Sato, Y. and Suenaga, K.},
-  title = {Performance of low-voltage STEM/TEM with delta corrector and cold field emission gun},
-  journal = {Journal of Electron Microscopy},
-  year = {2010}
-}
-@article{Muller2008,
-  author = {Muller, D.A. and Fitting Kourkoutis, L. and Murfitt, M. and Song, J.H. and Hwang, H.Y. and Silcox, J. and Dellby, N. and Krivanek, O.L.},
-  title = {Atomic-Scale Chemical Imaging of Composition and Bonding by Aberration-Corrected Microscopy},
-  journal = {Science},
-  year = {2008},
-  volume = {319},
-  pages = {1073-1076}
-}
-@article{Meyer2008,
-  author = {Meyer, J.C. and Girit, C.O. and Crommie, M.F. and Zettl, A.},
-  title = {Imaging and dynamics of light atoms and molecules on graphene},
-  journal = {Nature},
-  year = {2008},
-  volume = {454},
-  pages = {319-323}
-}
-@article{Muller2006,
-  author = {Muller, D.A. and Kirkland, E.J. and Thomas, M.G. and Grazul, J.L. and Fitting, L. and Weyland, M.},
-  title = {Room design for high-performance electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {2006},
-  volume = {106},
-  pages = {1033-1040}
-}
-@article{Xing2009,
-  author = {Xing, Q. and Lograsso, T.A.},
-  title = {A rapid method to correct objective lens astigmatism in a TEM},
-  journal = {Ultramicroscopy},
-  year = {2009},
-  volume = {109},
-  pages = {287-290}
-}
-@article{Nellist1998a,
-  author = {Nellist, P.D. and Pennycook, S.J.},
-  title = {Accurate structure determination from image reconstruction in {ADF} {STEM}},
-  journal = {Journal of Microscopy},
-  year = {1998},
-  volume = {1-2},
-  pages = {159-170}
-}
-@article{Schaffer2009,
-  author = {Schaffer, B. and Hohenester, U. and Truegler, A. and Hofer, F.},
-  title = {High-resolution surface plasmon imaging of gold nanoparticles by energy-filtered transmission electron microscopy},
-  journal = {Physical Review B},
-  year = {2009},
-  volume = {79},
-  pages = {041401}
-}
-@inproceedings{Rieger2008,
-  author = {Rieger, B. and Veen, G.N.A. van},
-  title = {Method to determine image sharpness and resolution
-in Scanning Electron Microscopy images},
-  year = {2008},
-  pages = {613-614},
-  month = {September 1-5},
-  editor = {Luysberg, M. and Tillmann, K. and Weirich, T.},
-  publisher = {Springer Verlag},
-  address = {Berline},
-  booktitle = {EMC 2008, Vol.1: Instrumentation and Methods}
-}
-@mastersthesis{Smith2009,
-  author = {Smith, S.C.},
-  title = {Improving single molecule 
-fluorescence superresolution techniques},
-  year = {2009},
-  school = {Delft University of Technology}
-}
-@mastersthesis{Vroonland2010,
-  author = {Vroonland, S.},
-  title = {Superresolution Using Blinking Emitters},
-  year = {2010},
-  month = {June},
-  address = {Delft, The Netherlands},
-  school = {Delft University of Technology}
-}
-@article{Hell2009,
-  author = {Hell, S.W.},
-  title = {Microscopy and its focal switch},
-  journal = {Nature Methods},
-  year = {2009},
-  volume = {6},
-  pages = {24-32}
-}
-@article{Small2009,
-  author = {Small, A.R.},
-  title = {Theoretical Limits on Errors and Acquisition Rates in Localizing Switchable Fluorophores},
-  journal = {Biophysical Journal - Biophysical Letters},
-  year = {2009},
-  volume = {92},
-  number = {2},
-  pages = {L16-L18}
-}
-@article{Podczeck1997,
-  author = {Podczeck, F.},
-  title = {A shape factor to assess the shape of particles using image analysis},
-  journal = {Powder Technology},
-  year = {1997},
-  volume = {93},
-  pages = {47-53}
-}
-@article{Shaner2004,
-  author = {Shaner, N.C. and Campbell, R.E. and Steinbach, P.A. and Giepmans, B.N.G. and Palmer, A.E. and Tsien, R.Y.},
-  title = {Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein},
-  journal = {Nature Biotechnology},
-  year = {2004},
-  volume = {22},
-  number = {12},
-  pages = {1567-1672}
-}
-@article{Sader2010,
-  author = {Sader, K. and Brown, A. and Brydon, R. and Bleloch, A.},
-  title = {Quantitativ eanalysis of image contrast in phase contrast STEM for low dose imaging},
-  journal = {Ultramicroscopy},
-  year = {2010},
-  volume = {110},
-  pages = {1324-1331}
-}
-@article{Aert2010,
-  author = {Aert, s. van and Chen, J.H. and Dyck, D. van},
-  title = {Linear versus non-linear structural information limit in high-resolution transmission electron microscopy},
-  journal = {Ultramicroscopy},
-  year = {2010},
-  volume = {110},
-  pages = {1404-1410}
-}
-@article{Donzel2001,
-  author = {Donzel, Christian and Geissler, Matthias and Bernard, Andr\\\'e and Wolf, Heiko and Michel, Bruno and Hilborn, J\\\"ons and Delamarche, Emmanuel},
-  title = {{Hydrophilic Poly(dimethylsiloxane) Stamps for Microcontact Printing}},
-  journal = {{Advanced Materials}},
-  year = {2001},
-  volume = {{13}},
-  number = {{15}}
-}
-@article{Wang1997,
-  author = {Wang, Michelle D. and Yin, Hong and Landick, Robert and Gelles, Jeff and Block, Steven M.},
-  title = {{Stretching DNA with Optical Tweezers}},
-  journal = {{Biophysical Journal}},
-  year = {1997},
-  volume = {{72}},
-  number = {{3}},
-  pages = {{1335-1346}}
-}
-@article{Blanchard1999,
-  author = {Blanchard, Paul M.
- Greenaway, Alan H.},
-  title = {{Simultaneous multiplane imaging with a distorted diffraction grating}},
-  journal = {{Applied Optics}},
-  year = {1999},
-  volume = {{38}},
-  number = {{32}},
-  pages = {{6692-6699}}
-}
-@article{Eversole2007,
-  author = {Eversole, D. and Luk'Yanchuk, B. and Ben-Yakar, A.},
-  title = {{Plasmonic laser nanoablation of silicon by the scattering of femtosecond pulses near gold nanospheres}},
-  journal = {{Applied Physics A}},
-  year = {2007},
-  volume = {{89}},
-  pages = {{283-291}}
-}
-@article{Dessinges2002,
-  author = {Dessinges, M. N. and Maier, B. and Zhang, Y. and Peliti, M. and Bensimon, D. and Croquette, V.},
-  title = {{Stretching Single Stranded DNA, a Model Polyelectrolyte}},
-  journal = {{Physical Review Letters}},
-  year = {2002},
-  volume = {{89}},
-  number = {{24}},
-  pages = {{248102-248106}}
-}
-@article{Taylor1990,
-  author = {Taylor, William H. and Hagerman, Paul J.},
-  title = {{Application of the Method of Phage T4 DNA Ligase-catalyzed Ring-closure to the Study of DNA Structure}},
-  journal = {{Journal of Molecular Biology}},
-  year = {1990},
-  volume = {{212}},
-  number = {{2}},
-  pages = {{363-376}}
-}
-@article{Uhlenbeck1930,
-  author = {Uhlenbeck, G.E. and Ornstein, L.S.},
-  title = {{On the Theory of the Brownian Motion}},
-  journal = {{Physical Review}},
-  year = {1930},
-  volume = {{36}}
-}
-@article{Yguerabide2001,
-  author = {Yguerabide, Juan and Yguerabide, Evangelina E.},
-  title = {{Resonance Light Scattering Particles as Ultrasensitive Labels for Detection of Analytes in a Wide Range of Applications}},
-  journal = {{Journal of Cellular Biochemistry Supplement}},
-  year = {2001},
-  volume = {{84}},
-  number = {{S37}},
-  pages = {{71-81}}
-}
-@article{Samuel2002,
-  author = {Samuel, Joseph and Sinha, Supurna},
-  title = {{Elasticity of semiflexible polymers}},
-  journal = {{Physical Review E}},
-  year = {2002},
-  volume = {{66}},
-  pages = {{050801}}
-}
-@article{Porschke1991,
-  author = {Porschke, Dietmar},
-  title = {{Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations}},
-  journal = {{Biophysical Chemistry}},
-  year = {1991},
-  volume = {{40}},
-  pages = {{169-179}}
-}
-@article{Schutz2000,
-  author = {Sch\\\"utz, Gerhard J. and Pastushenko, Vassili, Ph. and Gruber, Hermann J. and Knaus, Hans-G\\\"unter and Pragl, Bernt and Schindler, Hansgeorg},
-  title = {{3D Imaging of Individual Ion Channels in Live Cells at 40 nm Resolution}},
-  journal = {{Single Molecules}},
-  year = {2000},
-  volume = {{1}},
-  number = {{1}},
-  pages = {{25-31}}
-}
-@incollection{Vilfan2009,
-  author = {Vilfan, I.D. and Lipfert, J. and Koster, D.A. and Lemay, S.G. and Dekker, N.H.},
-  title = {{Magnetic Tweezers for Single-Molecule Experiments}},
-  year = {2009},
-  editor = {Hinterdorfer, P. and A., van Oijen},
-  publisher = {{Springer Science+Business Media}},
-  booktitle = {{Springer Handbook of Single-Molecule Biophysics}}
-}
-@article{Dvorak2003,
-  author = {Dvor\\\'ak, Zdenek and Pascussi, Jean-Marc and Modriansk\\\'y, Martin},
-  title = {{Approaches to Messenger RNA Detection - Comparison of Methods}},
-  journal = {{Biomedical Papers}},
-  year = {2003},
-  volume = {{147}},
-  number = {{2}},
-  pages = {{131-135}}
-}
-@article{Medalion2010,
-  author = {Medalion, Shlomi and Rappaport, Shay M. and Rabin, Yitzhak},
-  title = {{Coupling of twist and writhe in short DNA loops
- }},
-  journal = {{The Journal of Chemical Physics}},
-  year = {2010},
-  volume = {{132}},
-  number = {{4}},
-  pages = {{045101}}
-}
-@article{Cherif2006,
-  author = {Cherif, Boutheina and Roget, Andr\\\'e and Villiers, Christian L. and Calemczuk, Roberto and Leroy, Vincent and Marche, Patrice N. and Livache, Thierry and Villiers, Marie-Bernadette},
-  title = {{Clinically Related Protein-Peptide Interactions Monitored in Real Time on Novel Peptide Chips by Surface Plasmon Resonance Imaging}},
-  journal = {{Clinical Chemistry}},
-  year = {2006},
-  volume = {{52}},
-  number = {{2}},
-  pages = {{255-262}}
-}
-@article{Gibson1991,
-  author = {Gibson, Sarah Frisken and Lanni, Frederick},
-  title = {{Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy}},
-  journal = {{Journal of the Optical Society of America A}},
-  year = {1991},
-  volume = {{8}},
-  number = {{10}},
-  pages = {{1601-1613}}
-}
-@misc{Bouchiat2007,
-  author = {Bouchiat, C.},
-  title = {{Spatial Constraint Corrections to the Elasticity of dsDNA Measured with Magnetic Tweezers}},
-  year = {2007}
-}
-@article{Bouchiat2006,
-  author = {Bouchiat, C.},
-  title = {{Entropic elasticity of double-strand DNA subject to simple spatial constraints}},
-  journal = {{Journal of Statistical Mechanics: Theory and Experiment}},
-  year = {2006},
-  number = {{03}},
-  pages = {{P03019}}
-}
-@article{Yoshinaga2002,
-  author = {Yoshinaga, Natsuhiko and Yoshikawa, Kenichi and Kidoaki, Satoru},
-  title = {{Multiscaling in a long semiflexible polymer chain in two dimensions}},
-  journal = {{Journal of Chemical Physics}},
-  year = {2002},
-  volume = {{116}},
-  number = {{22}}
-}
-@article{Sottas1999,
-  author = {Sottas, Pierre-Edouard and Larquet, Eric and Stasiak, Andrzej and Dubochet, Jacques},
-  title = {{Brownian Dynamics Simulation of DNA Condensation}},
-  journal = {{Biophysical Journal}},
-  year = {1999},
-  volume = {{77}},
-  pages = {{1858-1870}}
-}
-@article{Yamakawa1976a,
-  author = {Yamakawa, Hiromi and Fujii, Motoharu},
-  title = {{Statistical mechanics of helical wormlike chains. I. Differential equations and moments}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1976},
-  volume = {{64}},
-  number = {{12}},
-  pages = {{5222-5228}}
-}
-@article{Odijk1979,
-  author = {Odijk, Theo},
-  title = {{On the Ionic-Strength Dependence of the Intrinsic Viscosity of DNA}},
-  journal = {{Biopolymers}},
-  year = {1979},
-  volume = {{18}},
-  pages = {{3111-3113}}
-}
-@article{Sheppard1997,
-  author = {Sheppard, C. J. R. and T\\\"or\\\"ok, P.},
-  title = {{Effects of specimen refractive index on confocal imaging}},
-  journal = {{Journal of Microscopy}},
-  year = {1997},
-  volume = {{185}},
-  number = {{3}},
-  pages = {{366-374}}
-}
-@article{Vologodskii1994,
-  author = {Vologodskii, Alexander},
-  title = {{DNA Extension under the Action of an External Force}},
-  journal = {{Macromolecules}},
-  year = {1994},
-  volume = {{27}},
-  number = {{20}},
-  pages = {{5623-5625}}
-}
-@article{Rayleigh1919,
-  author = {Rayleigh, Lord},
-  title = {{On the problem of random vibrations, and of random flights in one, two, or three dimensions}},
-  journal = {{Philosophical Magazine}},
-  year = {1919},
-  volume = {{37}},
-  pages = {{321-347}}
-}
-@article{Lukic2007,
-  author = {Luki\\\c{c}, Branimir and Jeney, Sylvia and Sviben, Zeljko and Kulik, Andrzej and Florin, Ernst-Ludwig and Forr\\\'o, L\\\'aszl\\\'o},
-  title = {{Motion of a colloidal particle in an optical trap}},
-  journal = {{Physical Review E}},
-  year = {2007},
-  volume = {{76}},
-  pages = {{011112}}
-}
-@article{Storm2003a,
-  author = {Storm, C. and Nelson, P. C.},
-  title = {{The bend stiffness of S-DNA}},
-  journal = {{Europhysics Letters (EPL)}},
-  year = {2003},
-  volume = {{62}},
-  number = {{5}},
-  pages = {{760-766}}
-}
-@article{Odijk1977,
-  author = {Odijk, Theo},
-  title = {{Polyelectrolytes near the Rod Limit}},
-  journal = {{Journal of Polymer Science: Polymer Physics Edition}},
-  year = {1977},
-  volume = {{15}},
-  pages = {{477-483}}
-}
-@article{Beausang2007b,
-  author = {Beausang, John F. and Nelson, Philip C.},
-  title = {{Diffusive hidden Markov model characterization of DNA looping dynamics in tethered particle experiments}},
-  journal = {{Physical Biology}},
-  year = {2007}
-}
-@article{Fixman1973,
-  author = {Fixman, Marshall and Alben, Richard},
-  title = {{Polymer conformational statistics. I. Probability distribution}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1973},
-  volume = {{58}},
-  number = {{4}},
-  pages = {{1553-1558}}
-}
-@article{Gupta1993,
-  author = {Gupta, Anshu M. and Edwards, Sam F.},
-  title = {{Mean-field theory of phase transitions in liquid-crystalline polymers}},
-  journal = {{Journal of Chemical Physics}},
-  year = {1993},
-  volume = {{98}},
-  number = {{2}},
-  pages = {{1588-1596}}
-}
-@article{Butler2005,
-  author = {Butler, Jason E. and Shaqfeh, Eric S.G.},
-  title = {{Brownian dynamics simulations of a flexible polymer chain which includes continuous resistance and multibody hydrodynamic interactions}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {2005},
-  volume = {{122}}
-}
-@article{Csiszar1991,
-  author = {Csiszar, Imre},
-  title = {{Why Least Squares and Maximum Entropy? An Axiomatic Approach to Inference for Linear Inverse Problems}},
-  journal = {{The Annals of Statistics}},
-  year = {1991},
-  volume = {{19}},
-  number = {{4}},
-  pages = {{2032-2066}}
-}
-@inproceedings{Dietrich2006,
-  author = {Dietrich, Heidelinde R.C. and Young, Ian T. and Garini, Yuval},
-  title = {{Advances in the Development of a Novel Method to be used in Proteomics using Gold Nanobeads}},
-  year = {2006},
-  volume = {{6092}},
-  editor = {Enderlein, J\\\"org and Gryczynski, Zygmunt K.},
-  publisher = {{Proceedings of SPIE}},
-  booktitle = {{Ultrasensitive and Single-Molecule Detection Technologies}}
-}
-@inproceedings{Dietrich2007,
-  author = {Dietrich, Heidelinde R.C. and Vermolen, Bart J. and Rieger, Bernd and Young, Ian T. and Garini, Yuval},
-  title = {{A New Optical Method for Characterizing Single Molecule Interactions based on Dark Field Microscopy}},
-  year = {2007},
-  volume = {{6444}},
-  pages = {644403-1 - 64403-8},
-  editor = {Enderlein, J\\\"org and Gryczynski, Zygmunt K.},
-  publisher = {{Proceedings of SPIE}},
-  booktitle = {{Ultrasensitive and Single-Molecule Detection Technologies II}}
-}
-@article{Torok1996,
-  author = {T\\\"or\\\"ok, P. and Sheppard, C. J. R. and Laxzik, Z.},
-  title = {{Dark-field and differential phase contrast imaging modes in confocal microscopy using a half-aperture stop}},
-  journal = {{Optik}},
-  year = {1996},
-  volume = {{103}},
-  number = {{3}},
-  pages = {{101-106}}
-}
-@article{Dietrich2002,
-  author = {Dietrich, Chrisian and Yang, Bing and Fujiwara, Takahiro and Kusumi, Akihiro and Jacobson, Ken},
-  title = {{Relationship of Lipid Rafts to Transient Confinement Zones Detected by Single Particle Tracking}},
-  journal = {{Biophysical Journal}},
-  year = {2002},
-  volume = {{82}},
-  number = {{1}},
-  pages = {{274-284}}
-}
-@article{Schafer1991,
-  author = {Schafer, Dorothy A. and Gelles, Jeff and Sheetz, Michael P. and Landick, Robert},
-  title = {{Transcription by single molecules of RNA polymerase observed by light microscopy}},
-  journal = {{Nature}},
-  year = {1991},
-  volume = {{352}},
-  number = {{6334}},
-  pages = {{444-448}}
-}
-@book{Mazo2002,
-  author = {Mazo, Robert M.},
-  title = {{Brownian Motion: fluctuations, dynamics, and applications}},
-  year = {2002},
-  publisher = {{Clarendon Press}},
-  series = {{International series of monographs on physics}},
-  address = {{Oxford}}
-}
-@article{Deng2009,
-  author = {Deng, Yi. and Shaevitz, Joshua W.},
-  title = {{Effect of aberration on height calibration in three-dimensional localization-base microscoyp and particle tracking}},
-  journal = {{Applied Optics}},
-  year = {2009},
-  volume = {{48}},
-  number = {{10}},
-  pages = {{1886-1890}}
-}
-@article{Han2006,
-  author = {Han, Y. and Alsayed, A.M. and Nobili, M. and Zhang, J. and Lubensky, T.C. and Yodh, A.G.},
-  title = {{Brownian Motion of an Ellipsoid}},
-  journal = {{Science}},
-  year = {2006},
-  volume = {{314}}
-}
-@article{Dietrich2009,
-  author = {Dietrich, Heidelinde R. C. and Rieger, Bernd and Wiertz, Frank G.M. and de Groote, Frederik H. and Heering, Hendrik A. and Young, Ian T. and Garini, Yuval},
-  title = {{Tethered Particle Motion Mediated by Scattering from Gold Nanoparticles and Darkfield Microscopy}},
-  journal = {{Journal of Nanophotonics}},
-  year = {2009},
-  volume = {{3}},
-  pages = {{031795}}
-}
-@article{Shaevitz2007,
-  author = {Shaevitz, Joshua W. and Fletcher, Daniel A.},
-  title = {{Enhanced three-dimensional deconvolution microscopy using a measured depth-varying point-spread function}},
-  journal = {{Journal of the Optical Society of America A}},
-  year = {2007},
-  volume = {{24}},
-  number = {{9}},
-  pages = {{2622-2627}}
-}
-@book{Doi1986,
-  author = {Doi, M. and Edwards, S.F. },
-  title = {{The Theory of Polymer Dynamics}},
-  year = {1986},
-  publisher = {{Oxford University Press}},
-  address = {{New York}}
-}
-@article{Dhar2002,
-  author = {Dhar, Abhishek and Chaudhuri, Debasish},
-  title = {{Triple Minima in the Free Energy of Semiflexible Polymers}},
-  journal = {{Physical Review Letters}},
-  year = {2002},
-  volume = {{89}},
-  number = {{6}},
-  pages = {{065502}}
-}
-@article{Watkins2004,
-  author = {Watkins, Lucas P. and Yang, Haw},
-  title = {{Information Bounsd and Optimal Analysis of Dynamic Single Molecule Measurements}},
-  journal = {{Biophysical Journal}},
-  year = {2004},
-  volume = {{86}},
-  number = {{6}},
-  pages = {{4015-4029}}
-}
-@article{Elburg2007,
-  author = {Elburg, H.J. van and Kuypers, L.C. and Decraemer, W.F. and Dirckx, J.J.J.},
-  title = {{Improved correction of axial geometrical distortion in index-mismatched fluorescent confocal microscopic images using high-aperture objective lenses}},
-  journal = {{Journal of Microscopy}},
-  year = {2007},
-  volume = {{228}},
-  number = {{1}},
-  pages = {{45-54}}
-}
-@phdthesis{Li2006,
-  author = {Li, Jinyu and Nelson, Philip C. and Betterton, M.D.},
-  title = {{DNA entropic elasticity for short molecules attached to beads}},
-  year = {2006}
-}
-@book{Cohen1988,
-  author = {Cohen, A. Clifford and Whitten, Betty Jones},
-  title = {{Parameter estimation in reliability and life span models}},
-  year = {1988},
-  volume = {{96}},
-  publisher = {{Marcel Dekker, Inc}},
-  series = {{Statistics: Textbooks and monographs}},
-  address = {{New York}}
-}
-@article{Cocco2002,
-  author = {Cocco, S. and Marko, J.F. and Monasson, R.},
-  title = {{Theoretical models for single-molecule DNA and RNA experiments: from elasticity to unzipping}},
-  journal = {{Comptes rendus de l'Academie des Sciences Physique}},
-  year = {2002},
-  volume = {{3}},
-  pages = {{569-584}}
-}
-@article{Cocco2003,
-  author = {Cocco, S. and Marko, J.F. and Monasson, R. and Sarkar, A. and Yan, J.},
-  title = {{Force-extension behavior of folding polymers}},
-  journal = {{The European Physical Journal E}},
-  year = {2003},
-  volume = {{10}},
-  pages = {{249-263}}
-}
-@article{Hughes2001,
-  author = {Hughes, Timothy R. and Shoemaker, Daniel D.},
-  title = {{DNA microarrays for expression profiling}},
-  journal = {{Current Opinion in Chemical Biology}},
-  year = {2001},
-  volume = {{5}},
-  pages = {{21-25}}
-}
-@article{Tinland1997,
-  author = {Tinland, Bernard and Pluen, Alain and Sturm, Jean and Weill, Gilbert},
-  title = {{Persistence Length of Single-Stranded DNA}},
-  journal = {{Macromolecules}},
-  year = {1997},
-  volume = {{30}},
-  number = {{19}},
-  pages = {{5763-5765}}
-}
-@article{Massey1951,
-  author = {Massey, Frank J., Jr.},
-  title = {{The Kolmogorov-Smirnov test for goodness of fit}},
-  journal = {{Journal of the American Statistical Association}},
-  year = {1951},
-  volume = {{46}},
-  pages = {{68-78}}
-}
-@article{Burkhardt1993,
-  author = {Burkhardt, Theodore W.},
-  title = {{Semiflexible polymer in the half plane and statistics of the integral of a Brownian curve}},
-  journal = {{Journal of Physics A: Mathematical and General}},
-  year = {1993},
-  volume = {{26}},
-  pages = {{L1157-L1162}}
-}
-@article{Stepanow2002,
-  author = {Stepanow, S. and Sch\\\"utz, G. M.},
-  title = {{The distribution function of a semiflexible polymer and random walks with constraints}},
-  journal = {{Europhysics Letters (EPL)}},
-  year = {2002},
-  volume = {{60}},
-  number = {{4}},
-  pages = {{546-551}}
-}
-@article{Smith1992,
-  author = {Smith, Steven B. and Finzi, Laura and Bustamante, Carlos},
-  title = {{Direct Mechanical Measurement of the Elasticity of Single DNA Molecules by Using Magnetic Beads}},
-  journal = {{Science}},
-  year = {1992},
-  volume = {{258}},
-  number = {{5085}},
-  pages = {{1122-1126}}
-}
-@article{Bao2002,
-  author = {Bao, Paul and Frutor, Anthony G. and Greef, Charles and Lahiri, Joydeep and Muller, Uwe and Peterson, Todd C. and Warden, Laurence and Xie, Xinying},
-  title = {{High-Sensitivity Detection of DNA Hybridization on Microarrays Using Resonance Light Scattering}},
-  journal = {{Analytical Chemistry}},
-  year = {2002},
-  volume = {{74}},
-  number = {{8}},
-  pages = {{1792-1979}}
-}
-@article{Baumann1997,
-  author = {Baumann, Christoph G. and Smith, Steven B. and Bloomfield, Victor A. and Bustamante, Carlos},
-  title = {{Ionic effects on the elasticity of single DNA molecules}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {1997},
-  volume = {{94}},
-  pages = {{6185-6190}}
-}
-@article{Vandenberg1991,
-  author = {Vandenberg, Elaine T. and Bertilsson, Lars and Liedberg, Bo and Uvdal, Kajsa and Erlandsson, Ragnar and Elwing, Hans and Lundstrom, Ingemar},
-  title = {{Structure of 3-aminopropyl triethoxy silane on silicon oxide}},
-  journal = {{Journal of Colloid and Interface Science}},
-  year = {1991},
-  volume = {{147}},
-  number = {{1}},
-  pages = {{103-118}}
-}
-@article{Blumberg2005,
-  author = {Blumberg, Seth and Gajraj, Arivalagan and Pennington, Matthew W.},
-  title = {{Three-Dimensional Characterization of Tethered Microspheres by Total Internal Reflection Fluorescence Microscopy}},
-  journal = {{Biophysical Journal}},
-  year = {2005},
-  volume = {{89}},
-  pages = {{1272-1281}}
-}
-@misc{Neumann2001,
-  author = {Neumann, Richard M.},
-  title = {{Entropic Elasticity of Weakly Perturbed Polymers}},
-  year = {2001},
-  pages = {11},
-  month = {January 22, 2001},
-  publisher = {{The Energy Institute, The Pennsylvania State University}}
-}
-@article{Ommering2010,
-  author = {van Ommering, Kim and Somers, Philip A. and Koets, Marjo and Schleipen, Jean J.H.B. and van Ijzendoorn, Leo J. and Prins, Menno W.J.},
-  title = {{Mobility and height detection of particle labels in an optical evanescent wave biosensor with single-label resolution}},
-  journal = {{Journal of Physics D: Applied Physics}},
-  year = {2010},
-  volume = {{43}},
-  number = {{15}},
-  pages = {{155501}}
-}
-@article{Heaton2001,
-  author = {Heaton, Richard J. and Peterson, Alexander W. and Georgiadis, Rosina M.},
-  title = {{Electrostatic surface plasmon resonance: Direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2001},
-  volume = {{98}},
-  number = {{7}},
-  pages = {{3701-3704}}
-}
-@article{Gobush1972,
-  author = {Gobush, William and Yamakawa, Hiromi and Stockmayer, W. H. and Magee, W. S.},
-  title = {{Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1972},
-  volume = {{57}},
-  number = {{7}},
-  pages = {{2839-2843}}
-}
-@article{Henderson2001,
-  author = {Henderson, Michael and Meyer, Mary C.},
-  title = {{Exploring the Confidence Interval for a Binomial Parameter in a First Course in Statistical Computing}},
-  journal = {{The American Statistician}},
-  year = {2001},
-  volume = {{55}},
-  number = {{4}},
-  pages = {{337-344}}
-}
-@article{Winkler1994,
-  author = {Winkler, Roland G. and Reineker, Peter and Harnau, Ludger},
-  title = {{Models and equilibrium properties of stiff molecular chains}},
-  journal = {{journal of Chemical Physics}},
-  year = {1994},
-  volume = {{101}},
-  number = {{9}},
-  pages = {{8119-8129}}
-}
-@article{William1972,
-  author = {William, Gobush and Hiromi, Yamakawa and Stockmayer, W. H. and Magee, W. S.},
-  title = {{Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1972},
-  volume = {{57}},
-  number = {{7}},
-  pages = {{2839-2843}}
-}
-@article{Peterlinz1997,
-  author = {Peterlinz, Kevin A. and Georgiadis, Rosina M. and Herne, Tonya M. and Tarlov, Michael J.},
-  title = {{Observation of Hybridization and Dehybridization of Thiol-Tethered DNA Using Two-Color Surface Plasmon Resonance Spectroscopy}},
-  journal = {{Journal of the American Chemical Society}},
-  year = {1997},
-  volume = {{119}},
-  pages = {{3401-3402}}
-}
-@article{Morriss2010,
-  author = {Morriss-Andrews, Alex and Rottler, Joerg and Plotkin, Steven S.},
-  title = {{A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {2010},
-  volume = {{132}},
-  number = {{3}},
-  pages = {{035105}}
-}
-@article{Chandrasekhar1943,
-  author = {Chandrasekhar, S.},
-  title = {{Stochastic Problems in Physics and Astronomy}},
-  journal = {{Revieuws of Modern Physics}},
-  year = {1943},
-  volume = {{15}},
-  number = {{1}},
-  pages = {{2-87}}
-}
-@inproceedings{Ram2005,
-  author = {Ram, Sripad and Ward, E. Sally and Ober, Raimond J.},
-  title = {{How accurately can a single molecule be localized in three dimensions using a fluorescence microscope?}},
-  year = {2005},
-  volume = {{5699}},
-  pages = {426-435},
-  series = {{Proceedings of SPIE}},
-  booktitle = {{Imaging, Manipulation and Analysis of Biomolecule and Cells: Fundamentals and Applications III}}
-}
-@book{Papoulis1991,
-  author = {Papoulis, Athanasios},
-  title = {{Probability, random variables, and stochastic processes}},
-  year = {1991},
-  publisher = {{McGraw-Hill}},
-  series = {{McGraw-Hill series in electrical engineering, Communications and signal processing}},
-  address = {{Singapore}},
-  edition = {{Third edition}}
-}
-@inproceedings{Ram2007,
-  author = {Ram, Sripad and Chao, Jerry and Prabhat, Prashant and Ward, E. Sally and Ober, Raimond J.},
-  title = {{A novel approach to determining the three-dimensional location of microscopic objects with applications to 3D particle tracking}},
-  year = {2007},
-  volume = {{6443}},
-  pages = {64430D},
-  editor = {Conchello, Jose-Angel and Cogswell, Carol J. and Wilson, Tony},
-  publisher = {{Proceedings of SPIE}},
-  booktitle = {{Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIV}}
-}
-@article{Wu2005,
-  author = {Wu, Mingming and Roberts, John W. and Buckley, Mark},
-  title = {{Three-dimensional fluorescent particle tracking at micron-scale using a single camera}},
-  journal = {{Experiments in Fluids}},
-  year = {2005},
-  volume = {{38}},
-  pages = {{461-465}}
-}
-@article{Maier2000,
-  author = {Maier, Berenike and Bensimon, David and Croquette, Vincent},
-  title = {{Replication by a single DNA polymerase of a stretched single-stranded DNA}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2000},
-  volume = {{97}},
-  number = {{22}},
-  pages = {{12002-12007}}
-}
-@misc{Odijk2005,
-  author = {Odijk, Theo},
-  title = {{Note on DNA grafted to a surface (experiments Heidi Dietrich, TU Delft)}},
-  year = {2005},
-  month = {August 4, 2005}
-}
-@article{Zimm1956,
-  author = {Zimm, Bruno H.},
-  title = {{Dynamics of Polymer Molecules in Dilute Solution: Viscoelasticity, Flow Birefringence and Dielectric Loss}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1956},
-  volume = {{24}},
-  number = {{2}},
-  pages = {{269-278}}
-}
-@article{Sadr2007,
-  author = {Sadr, Reza and Hohenegger, Christel and Li, Haifeng and Mucha, Peter J. and Yoda, Minami},
-  title = {{Diffusion-induced bias in near-wall velocimetry}},
-  journal = {{Journal of Fluid Mechanics}},
-  year = {2007},
-  volume = {{577}},
-  pages = {{443-456}}
-}
-@article{Qian2000b,
-  author = {Qian, Hong},
-  title = {{Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials}},
-  journal = {{Biophysical Journal}},
-  year = {2000},
-  volume = {{79}},
-  number = {{1}},
-  pages = {{137-143}}
-}
-@article{Pirrung2002,
-  author = {Pirrung, Michael C.},
-  title = {{How to Make a DNA Chip}},
-  journal = {{Angewandte Chemie International Edition}},
-  year = {2002},
-  volume = {{41}},
-  number = {{8}},
-  pages = {{1276-1289}}
-}
-@article{Marko2003,
-  author = {Marko, John F. and Cocco, Simona},
-  title = {{The micromechanics of DNA}},
-  journal = {{Physics World}},
-  year = {2003},
-  volume = {{16}},
-  number = {{3}}
-}
-@article{Qian2000a,
-  author = {Qian, Hong},
-  title = {{A mathematical analysis for the Brownian dynamics of a DNA tether}},
-  journal = {{Journal of Mathematical Biology}},
-  year = {2000},
-  volume = {{41}},
-  number = {{4}},
-  pages = {{331-340}}
-}
-@misc{Marko2005,
-  author = {Marko, J.F.},
-  title = {{Introduction to Single-DNA Micromechanics}},
-  year = {2005},
-  pages = {63},
-  month = {June 2, 2005},
-  publisher = {{Department of Physics, University of Illinois at Chicago}}
-}
-@article{Schaefer1980,
-  author = {Schaefer, D.W. and Joanny, J.F. and Pincus, P.},
-  title = {{Dynamics of Semiflexible Polymers in Solution}},
-  journal = {{Macromolecules}},
-  year = {1980},
-  volume = {{13}},
-  number = {{5}},
-  pages = {{1280-1289}}
-}
-@article{Zurla2006,
-  author = {Zurla, C. and Franzini, A. and Galli, G. and Dunlap, D. D. and Lewis, D. E. A. and Adhya, S. and Finzi, L.},
-  title = {{Novel tethered particle motion analysis of CI protein-mediated DNA looping in the regulation of bacteriophage lambda}},
-  journal = {{Journal of Physics: Condensed Matter}},
-  year = {2006},
-  volume = {{18}},
-  pages = {{S225-S234}}
-}
-@article{Prabhat2007,
-  author = {Prabhat, Prashant and Gan, Zhuo and Chao, Jerry and Ram, Sripad and Vaccaro, Carlos and Gibbons, Steven and Ober, Raimond J. and Ward, E. Sally},
-  title = {{Elucidation of intracellular recycling pathways leading to exocytosis of the Fc receptor, FcRn, by using multifocal plane microscopy}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2007},
-  volume = {{104}},
-  number = {{14}},
-  pages = {{5889-5894}}
-}
-@inproceedings{Prabhat2006,
-  author = {Prabhat, Prashant and Ram, Sripad and Ward, E. Sally and Ober, Raimond J.},
-  title = {{Simultaneous imaging of several focal planes in fluorescence microscopy for the study of cellular dynamics in 3D}},
-  year = {2006},
-  volume = {{6090}},
-  pages = {60900L},
-  editor = {Conchello, Jose-Angel and Cogswell, Carol J. and Wilson, Tony},
-  publisher = {{Proceedings of SPIE}},
-  booktitle = {{Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIII}}
-}
-@article{Marko1994,
-  author = {Marko, John F. and Siggia, Eric D.},
-  title = {{Fluctuations and Supercoiling of DNA}},
-  journal = {{Science}},
-  year = {1994},
-  volume = {{265}},
-  number = {{5171}},
-  pages = {{506-508}}
-}
-@article{Marko1995,
-  author = {Marko, John F. and Siggia, Eric D.},
-  title = {{Stretching DNA}},
-  journal = {{Macromolecules}},
-  year = {1995},
-  volume = {{28}},
-  number = {{26}},
-  pages = {{8759-8770}}
-}
-@article{Winkler1992,
-  author = {Winkler, R.G. and Reineker, P.},
-  title = {{Finitie Size Distribution and Partition Functions of Gaussian Chains: Maximum Entropy Approach}},
-  journal = {{Macromolecules}},
-  year = {1992},
-  volume = {{25}},
-  number = {{24}},
-  pages = {{6891-6896}}
-}
-@article{Berciaud2005,
-  author = {Berciaud, St\\\'ephane and Cognet, Laurent and Tamarat, Philippe and Lounis, Brahim},
-  title = {{Observation of Intrinsic Size Effects in the Optical Response of Individual Gold Nanoparticles}},
-  journal = {{Nano Letters}},
-  year = {2005},
-  volume = {{5}},
-  number = {{3}},
-  pages = {{515-518}}
-}
-@article{Lahtinen2001,
-  author = {Lahtinen, J.M. and Hjelt, T. and Ala-Nissila, T. and Chvoj, Z.},
-  title = {{Diffusion of hard disks and rodlike molecules on surfaces}},
-  journal = {{Physical Review E}},
-  year = {2001},
-  volume = {{64}}
-}
-@article{Wong2006,
-  author = {Wong, Wesley P. and Halvorsen, Ken},
-  title = {{The effect of integration time on fluctuation measurements: calibrating an optical trap in the presence of motion blur}},
-  journal = {{Optics Express}},
-  year = {2006},
-  volume = {{14}},
-  number = {{25}},
-  pages = {{12517-12531}}
-}
-@article{Perkins1994,
-  author = {Perkins, Thomas T. and Quake, Stephern R. and Smith, Douglas E. and Chu, Steven},
-  title = {{Relaxation of a Single DNA Molecule Observed by Optical Microscopy}},
-  journal = {{Science}},
-  year = {1994},
-  volume = {{264}},
-  pages = {{822-826}}
-}
-@article{Lu2002,
-  author = {Lu, Yongjun and Weers, Brock and Stellwagen, Nancy C.},
-  title = {{DNA Persistencde Length Revisited}},
-  journal = {{Biopolymers}},
-  year = {2002},
-  volume = {{61}},
-  pages = {{261-275}}
-}
-@article{Laurens2009,
-  author = {Laurens, Niels and Bellamy, Stuart R. W. and Harms, August F. and Kovacheva, Yana S. and Halford, Stephen F. and Wuite, Gijs J. L.},
-  title = {{Dissecting protein-induced DNA looping dynamics in real time}},
-  journal = {{Nucleic Acids Research}},
-  year = {2009}
-}
-@article{Yguerabide1998b,
-  author = {Yguerabide, Juan and Yguerabide, Evangelina E.},
-  title = {{Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. II. Experimental Characterization}},
-  journal = {{Analytical Biochemistry}},
-  year = {1998},
-  volume = {{262}},
-  pages = {{157-176}}
-}
-@article{Capitanio2004,
-  author = {Capitanio, M. and Vanzi, F. and Broggio, C. and Cicchi, R. and Normanno, D. and Romano, G. and Sacconi, L. and Pavone, F.S.},
-  title = {{Exploring Molecular Motors and Switches at the Single-Molecule Level}},
-  journal = {{Microscopy Research and Technique}},
-  year = {2004},
-  volume = {{65}},
-  pages = {{194-204}}
-}
-@article{Sheppard2004,
-  author = {Sheppard, Colin J.R.},
-  title = {{Annular pupils, radial polarization, and superresolution}},
-  journal = {{Applied Optics}},
-  year = {2004},
-  volume = {{43}},
-  number = {{22}},
-  pages = {{4322-4327}}
-}
-@article{Zhu2006,
-  author = {Zhu, Qiang and Zeng, Jun and Triantafyllou, Michael S. and Yue, Dick K.P.},
-  title = {{Direct Numerical Simulation of Single-Molecule DNA by Cable Dynamics}},
-  journal = {{Journal of Microelectromechanical Systems}},
-  year = {2006},
-  volume = {{15}},
-  number = {{5}},
-  pages = {{1078-1087}}
-}
-@article{Strick1998,
-  author = {Strick, T.R. and Allemand, J.-F. and Bensimon, D. and Croquette, V.},
-  title = {{Behavior of Supercoiled DNA}},
-  journal = {{Biophysical Journal}},
-  year = {1998},
-  volume = {{74}},
-  pages = {{2016-2028}}
-}
-@article{Pouget2004,
-  author = {Pouget, Noelle and Dennis, Cynthia and Turlan, Catherine and Grigoriev, Mikhail and Chandler, Michael and Salome, Laurence},
-  title = {{Single-particle tracking for DNA tether length monitoring}},
-  journal = {{Nucleic Acids Research}},
-  year = {2004},
-  volume = {{32}},
-  number = {{9}}
-}
-@article{Saito1967,
-  author = {Saito, Nobuhiko and Takahashi, Kunihiko and Yunoki, Yasuo},
-  title = {{The Statistical Mechanical Theory of Stiff Chains}},
-  journal = {{Journal of the Physical Society of Japan}},
-  year = {1967},
-  volume = {{22}},
-  number = {{1}},
-  pages = {{219-226}}
-}
-@article{Smith1996,
-  author = {Smith, Steven B. and Cui, Yujia and Bustamante, Carlos},
-  title = {{Overstretching B-DNA: The Elastic Response of Individual Double-Stranded and Single-Stranded DNA Molecules}},
-  journal = {{Science}},
-  year = {1996},
-  volume = {{271}},
-  number = {{5250}},
-  pages = {{795-799}}
-}
-@article{Roeffaers2007,
-  author = {Roeffaers, Maarten B.J. and De Cremer, Gert and Uji-i, Hiroshi and Muls, Beniot and Sels, Bert F. and Jacobs, Pierre A. and De Schryver, Frans C. and De Vos, Dirk E. and Hofkens, Johan},
-  title = {{Single-molecule fluorescence spectroscopy in (bio)catalysis}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2007},
-  volume = {{104}},
-  number = {{31}},
-  pages = {{12603-12609}}
-}
-@book{Pluta1989,
-  author = {Pluta, Maksymilian},
-  title = {{Advanced Light Microscopy}},
-  year = {1989},
-  volume = {{2: Specialized Methods}},
-  publisher = {{Elsevier}},
-  address = {{Amsterdam}}
-}
-@book{Pluta1988,
-  author = {Pluta, Maksymilian},
-  title = {{Advanced Light Microscopy}},
-  year = {1988},
-  volume = {{1: Principles and Basic Properties}},
-  publisher = {{Elsevier}},
-  address = {{Amsterdam}}
-}
-@article{Broek2006,
-  author = {Broek, Bram van den and Vanzi, Francesco and Normanno, Davide and Pavone, Francesco S. and Wuite, Gijs J. L.},
-  title = {{Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI}},
-  journal = {{Nucleic Acids Research}},
-  year = {2006},
-  volume = {{34}},
-  number = {{1}},
-  pages = {{167-174}}
-}
-@article{Braslavsky2003,
-  author = {Braslavsky, Ido and Hebert, Benedict and Kartalov, Emil and Quake, Stephern R.},
-  title = {{Sequence Information can be Obtained from Single DNA Molecules}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2003},
-  volume = {{100}},
-  number = {{7}},
-  pages = {{3960-3964}}
-}
-@article{Ariel2003,
-  author = {Ariel, Gil and Andelman, David},
-  title = {{Persistence length of a strongly charged rodlike polyelectrolyte in the presence of salt}},
-  journal = {{Physical Review E}},
-  year = {2003},
-  volume = {{67}},
-  number = {{1}},
-  pages = {{011805-1-011805-11}}
-}
-@article{Yamakawa1972,
-  author = {Yamakawa, Hiromi and Stockmayer, W. H.},
-  title = {{Statistical Mechanics of Wormlike Chains. II. Excluded Volume Effects}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1972},
-  volume = {{57}},
-  number = {{7}},
-  pages = {{2843-2854}}
-}
-@article{Davidson1995,
-  author = {Davidson, John A.},
-  title = {{Arrays of Uniform Latex Spheres as Test Objects in Optical Microscopy}},
-  journal = {{Particle and Particle Systems Characterization}},
-  year = {1995},
-  volume = {{12}},
-  pages = {{173-178}}
-}
-@article{Huisken2004,
-  author = {Huisken, Jan and Swoger, Jim and Del Bene, Filippo and Wittbrodt, Joachim and Stelzer, Ernst H. K.},
-  title = {{Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy}},
-  journal = {{Science}},
-  year = {2004},
-  volume = {{305}},
-  number = {{5686}},
-  pages = {{1007-1009}}
-}
-@article{Goldman1967,
-  author = {Goldman, A.J. and Cox, R.G. and Brenner, H.},
-  title = {{Slow viscous motion of a sphere parallel to a plane wall - I Motion through a quiescent fluid}},
-  journal = {{Chemical Engineering Science}},
-  year = {1967},
-  volume = {{22}},
-  number = {{4}},
-  pages = {{637-651}}
-}
-@article{Maher2007,
-  author = {Maher, Brendan},
-  title = {{Spring theory}},
-  journal = {{Nature}},
-  year = {2007},
-  volume = {{448}},
-  pages = {{984-986}}
-}
-@article{Cui2008,
-  author = {Cui, Xiquan and Lee, Lap Man and Heng, Xin and Zhong, Weiwei and Sternberg, Paul W. and Psaltis, Demetri and Yang, Changhuei},
-  title = {{Lensless high-resolution on-chip optrofluidic microscopes for Caenorhabditis elegans and cell imaging}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2008},
-  volume = {{105}},
-  number = {{31}},
-  pages = {{10670-10675}}
-}
-@article{Hagerman1988,
-  author = {Hagerman, P.J.},
-  title = {{Flexibility of DNA}},
-  journal = {{Annual Review of Biophysics and BioEngineering}},
-  year = {1988},
-  volume = {{17}},
-  pages = {{265-286}}
-}
-@article{Vanzi2006,
-  author = {Vanzi, Francesco and Broggio, Chiara and Sacconi, Leonardo and Pavone, Francesco Saverio},
-  title = {{Lac repressor hinge flexibility and DNA looping: single molecule kinetics by tethered particle motion}},
-  journal = {{Nucleic Acids Research}},
-  year = {2006},
-  volume = {{34}},
-  number = {{12}},
-  pages = {{3409-3420}}
-}
-@article{Bronstein2009,
-  author = {Bronstein, I. and Israel, Y. and Kepten, E. and Mai, S. and Shav-Tal, Y. and Barkai, E. and Garini, Y.},
-  title = {{Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells}},
-  journal = {{Physical Review Letters}},
-  year = {2009},
-  volume = {{103}},
-  number = {{1}},
-  pages = {{018102}}
-}
-@article{Bawendi1985,
-  author = {Bawendi, M.G. and Freed, Karl F.},
-  title = {{A Wiener integral model for stiff polymer chains}},
-  journal = {{Journal of Chemical Physics}},
-  year = {1985},
-  volume = {{83}},
-  number = {{5}},
-  pages = {{2491}}
-}
-@article{Martin2002,
-  author = {Martin, Douglas S. and Forstner, Martin B. and K\\\"as, Josef A.},
-  title = {{Apparent Subdiffusion Inherent to Single Particle Tracking}},
-  journal = {{Biophysical Journal}},
-  year = {2002},
-  volume = {{83}},
-  number = {{4}},
-  pages = {{2109-2117}}
-}
-@article{Savelkoul2006,
-  author = {Savelkoul, Paul H.M. and Catsburg, Arnold and Mulder, Sije and Oostendorp, Ludo and Schirm, Jurjen and Wilke, Hans and van der Zanden, Adri G.M. and Noordhoek, Gerda T.},
-  title = {{Detection of Mycobacterium tuberculosis complex with Real Time PCR: Comparison of different primer-probe sets based on the IS6110 element}},
-  journal = {{Journal of Microbiological Methods}},
-  year = {2006},
-  volume = {{66}},
-  number = {{1}},
-  pages = {{177-180}}
-}
-@article{Bustamante2000,
-  author = {Bustamante, Carlos and Smith, Steven B. and Liphardt, Jan and Smith, Doug},
-  title = {{Single-molecule studies of DNA mechanics}},
-  journal = {{Current Opinion in Structural Biology}},
-  year = {2000},
-  volume = {{10}},
-  number = {{3}},
-  pages = {{279-285}}
-}
-@article{Bustamante2003,
-  author = {Bustamante, Carlos and Bryant, Zev and Smith, Steven B.},
-  title = {{Ten years of tension: single-molecule DNA mechanics}},
-  journal = {{Nature}},
-  year = {2003},
-  volume = {{421}},
-  pages = {{423-427}}
-}
-@article{Holtzer2007,
-  author = {Holtzer, L. and Meckel, T. and Schmidt, T.},
-  title = {{Nanometric three-dimensional tracking of individual quantom dots in cells}},
-  journal = {{Applied Physics Letters}},
-  year = {2007},
-  volume = {{90}},
-  pages = {{053902}}
-}
-@article{Huang2008,
-  author = {Huang, Bo and Wang, Wenqin and Bates, Mark and Zhuang, Xiaowei},
-  title = {{Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy}},
-  journal = {{Science}},
-  year = {2008},
-  volume = {{319}},
-  pages = {{810-813}}
-}
-@article{Lindner2009,
-  author = {Lindner, Moshe and Nir, Guy and Dietrich, Heidelinde R. C. and Young, Ian T. and Tauber, Elad and Bronshtein, I. and Altman, Liat and Garini, Yuval},
-  title = {{Studies of Single Molecules in their Natural Form}},
-  journal = {{Israel Journal of Chemistry}},
-  year = {2009},
-  volume = {{49}},
-  pages = {{283-291}}
-}
-@article{Wilhelm1996,
-  author = {Wilhelm, Jan and Frey, Erwin},
-  title = {{Radial Distribution Function of Semiflexible Polymers}},
-  journal = {{Physical Review Letters}},
-  year = {1996},
-  volume = {{77}},
-  number = {{12}},
-  pages = {{2581}}
-}
-@article{Clercx1992,
-  author = {Clercx, H.J.H. and Schram, P.P.J.M.},
-  title = {{Brownian particles in shear flow and harmonic potentials: A study of long-time tails}},
-  journal = {{Physical Review A}},
-  year = {1992},
-  volume = {{46}},
-  number = {{4}},
-  pages = {{1942-1950}}
-}
-@inproceedings{Subotic2004,
-  author = {Subotic, Nadja and van de Ville, Dimitri and Unser, Michael},
-  title = {{On the Feasability of Axial Tracking of a Fluorescent Nano-Particle Using a Defocusing Model}},
-  year = {2004},
-  volume = {{2}},
-  pages = {1231-1234},
-  booktitle = {{Proceedings IEEE International Symposium on Biomedical Imaging: From Macro to Nano}}
-}
-@article{Ebenstein2009,
-  author = {Ebenstein, Y. and Gassman, N. and Kim, S. and Antelman, J. and Kim, Y. and Ho, S. and Samuel, R. and Michalet, X. and Weiss, S.},
-  title = {Lighting Up Individual {DNA} Binding Proteins with Quantum Dots},
-  journal = {{Nano Letters}},
-  year = {2009},
-  volume = {{9}},
-  number = {{4}},
-  pages = {{1598-1603}}
-}
-@article{Harlepp2004,
-  author = {Harlepp, S. and Robert, J. and Darnton, N.C. and Chateney, D.},
-  title = {{Subnanometric measurements of evanescent wave penetration depth using total internal reflection microscopy combined with fluorescent correlation spectroscopy}},
-  journal = {{Applied Physics Letters}},
-  year = {2004},
-  volume = {{85}},
-  number = {{17}}
-}
-@inproceedings{Nguyen2000,
-  author = {Nguyen, Lam K. and Bravo-Zanoguera, Miguel and Kellner, Albert L. and Price, Jeffrey H.},
-  title = {{Magnification Corrected Optical Image Splitting for Simultaneous Multiplanar Acquisition}},
-  year = {2000},
-  volume = {{3921}},
-  pages = {31-40},
-  editor = {Farkas, Daniel L. and Leif, Robert C.},
-  publisher = {{Proceedings of SPIE}},
-  booktitle = {{Optical Diagnostics of Living Cells III}}
-}
-@article{Baslavsky2001,
-  author = {Baslavsky, Ido and Amit, Roee and Jaffar Ali, B.M. and Gileadi, Opher and Oppenheim, Amos and Stavans, Joel},
-  title = {{Objective-type dark-field illumination for scattering from microbeads}},
-  journal = {{Applied Optics}},
-  year = {2001},
-  volume = {{40}},
-  number = {{31}},
-  pages = {{5650-5667}}
-}
-@article{Stepanow2004,
-  author = {Stepanow, S.},
-  title = {{Statistical mechanics of semiflexible polymers}},
-  journal = {{The European Physical Journal B}},
-  year = {2004},
-  volume = {{39}},
-  number = {{4}},
-  pages = {{499-512}}
-}
-@article{Gelles1988,
-  author = {Gelles, Jeff and Schnapp, Bruce J. and Sheetz, Michael P.},
-  title = {{Tracking kinesin-driven movements with nanometric-scale precision}},
-  journal = {{Nature}},
-  year = {1988},
-  volume = {{331}},
-  number = {{6155}},
-  pages = {{450-453}}
-}
-@book{Rubinstein2006,
-  author = {Rubinstein, Michael and Colby, Ralph H.},
-  title = {{Polymer Physics}},
-  year = {2006},
-  publisher = {{Oxford University Press Inc.}},
-  address = {{New York}}
-}
-@article{Seol2007,
-  author = {Seol, Yeonee and Li, Jinyu and Nelson, Philip C. and Perkins, Thomas T. and Betterton, M.D.},
-  title = {{Elasticity of Short DNA Molecules: Theory and Experiment for Contour Lengths of 0.6-7 um}},
-  journal = {{Biophysical Journal}},
-  year = {2007},
-  volume = {{93}},
-  number = {{12}},
-  pages = {{4360-4373}}
-}
-@article{Cohen2007,
-  author = {Cohen, Adam E. and Moerner, W.E.},
-  title = {{Principle-component analysis of shape fluctuations of single DNA molecules}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2007},
-  volume = {{104}},
-  number = {{31}},
-  pages = {{12622-12627}}
-}
-@article{Saxton2007,
-  author = {Saxton, Michael J.},
-  title = {{A Biological Interpretation of Transient Anomalous Subdiffusion. I. Qualitative Model}},
-  journal = {{Biophysical Journal}},
-  year = {2007},
-  volume = {{92}},
-  number = {{4}},
-  pages = {{1178-1191}}
-}
-@article{Otto1994,
-  author = {Otto, Matthias and Eckert, Jochen and Vilgis, Thomas A.},
-  title = {{Persistence lengths of semiflexible chains - Methods and approximations}},
-  journal = {{Macromolecular Theory and Simulations}},
-  year = {1994},
-  volume = {{3}},
-  number = {{3}},
-  pages = {{543-555}}
-}
-@article{Vennemann2007,
-  author = {Vennemann, Peter and Lindken, Ralph and Westerweel, Jerry},
-  title = {{In vivo whole-field blood velocity measurement techniques}},
-  journal = {{Experiments in Fluids}},
-  year = {2007},
-  volume = {{42}},
-  number = {{3}},
-  pages = {{495-511}}
-}
-@article{Vosch2007,
-  author = {Vosch, Tom and Antoku, Yasuko and Hsiang, Jung-Cheng and Richards, Chris I. and Gonzalez, Jose I. and Dickson, Robert M.},
-  title = {{Strongly emissive individual DNA-encapsulated Ag nanoclusters as single-molecule fluorophores}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2007},
-  volume = {{104}},
-  number = {{31}},
-  pages = {{12616-12621}}
-}
-@article{Galletto2006,
-  author = {Galletto, Roberto and Amitani, Ichiro and Baskin, Ronald J. and Kowalczykowski, Stephen C.},
-  title = {{Direct observation of individual RecA filaments assembling on single DNA molecules}},
-  journal = {{Nature}},
-  year = {2006},
-  volume = {{443}},
-  number = {{7113}},
-  pages = {{875-878}}
-}
-@article{Singh-Zocchi2003,
-  author = {Singh-Zocchi, Mukta and Dixit, Sanhita and Ivanov, Vassili and Zocchi, Giovanni},
-  title = {{Single-molecule detection of DNA hybridization}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2003},
-  volume = {{100}},
-  number = {{13}},
-  pages = {{7605-7610}}
-}
-@article{Frej1993,
-  author = {Frej, Nasser A. and Prieve, Dennis C.},
-  title = {{Hindered diffusion of a single sphere very near a wall in a nonuniform force field}},
-  journal = {{Journal of Chemical Physics}},
-  year = {1993},
-  volume = {{98}},
-  number = {{9}},
-  pages = {{7552-7564}}
-}
-@article{Lagowski1991,
-  author = {Lagowski, Jolanta B. and Noolandi, Jaan and Nickel, Bernie},
-  title = {{Stiff chain model-functional integral approach}},
-  journal = {{Journal of Chemical Physics}},
-  year = {1991},
-  volume = {{95}},
-  number = {{2}},
-  pages = {{1266-1296}}
-}
-@article{Bednar1995,
-  author = {Bednar, Jan and Furrer, Patrick and Katritch, Vsevolod and Stasiak, Alicja Z. and Dubochet, Jacques and Stasiak, Andrzej},
-  title = {{Determination of DNA Persistence Length by Cryo-electron Microscopy. Separation of the Static and Dynamic Contributions to the Apparent Persistence Length of DNA}},
-  journal = {{Journal of Molecular Biology}},
-  year = {1995},
-  volume = {{254}},
-  number = {{4}},
-  pages = {{579-594}}
-}
-@article{McIntosh2009,
-  author = {McIntosh, D.B. and Ribeck, N. and Saleh, O.A.},
-  title = {{Detailed scaling analysis of low-force polyelectrolyte elasticity}},
-  journal = {{Physical Review E}},
-  year = {2009},
-  volume = {{80}},
-  number = {{4}},
-  pages = {{041803}}
-}
-@article{Hyeon2006b,
-  author = {Hyeon, Changbong and Dima, Ruxandra I. and Thirumalai, D.},
-  title = {{Size, shape, and flexibility of RNA structures}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {2006},
-  volume = {{125}},
-  number = {{3}},
-  pages = {{194905}}
-}
-@article{Caarls2010,
-  author = {Caarls, W. and Rieger, B and de Vries, A.H.B. and Arndt-Jovin, D.J. and Jovin, T.M.},
-  title = {{Minimizing light exposure with the programmable array microscope}},
-  journal = {{Journal of Microscopy}},
-  year = {2010}
-}
-@article{Jacobsen2006,
-  author = {Jacobsen, Volker and Stoller, Patrick and Brunner, Christian and Vogel, Viola and Sandoghdar, Vahid},
-  title = {{Interferometric optical detection and tracking of very small gold nanoparticles at a water-glass interface}},
-  journal = {{Optics Express}},
-  year = {2006},
-  volume = {{14}},
-  number = {{1}},
-  pages = {{405}}
-}
-@article{Crut2007,
-  author = {Cut, Aur\\\'elien and Koster, Daniel A. and Seidel, Ralf and Wiggins, Chris H. and Dekker, Nynke H.},
-  title = {{Fast dynamics of supercoiled DNA revealed by single-molecule experiments}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2007},
-  volume = {{104}},
-  number = {{29}},
-  pages = {{11957-11962}}
-}
-@article{Yguerabide1998a,
-  author = {Yguerabide, Juan and Yguerabide, Evangelina E.},
-  title = {{Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. I. Theory}},
-  journal = {{Analytical Biochemistry}},
-  year = {1998},
-  volume = {{262}},
-  pages = {{137-156
- }}
-}
-@article{Strick1998b,
-  author = {Strick, T.R. and Allemand, J.-F. and Croquette, V. and Bensimon, D.},
-  title = {{Physical Approaches to the Study of DNA}},
-  journal = {{Journal of Statistical Physics}},
-  year = {1998},
-  volume = {{93}},
-  number = {{3-4}},
-  pages = {{647-672}}
-}
-@article{Rechendorff2009,
-  author = {Rechendorff, Kristian and Witz, Guillaume and Adamcik, Jozef and Dietler, Giovanni},
-  title = {{Persistence length and scaling properties of single-stranded DNA adsorbed on modified graphite}},
-  journal = {{Journal of Chemical Physics}},
-  year = {2009},
-  volume = {{131}},
-  number = {{9}},
-  pages = {{095103}}
-}
-@article{Graff2006,
-  author = {Graff, Mason and Frazier, A. Bruno},
-  title = {{Resonance Light Scattering (RLS) Detection of Nanoparticle Separations in a Microelectrical Field-Flow Fractionation System}},
-  journal = {{IEEE Transactions on Nanotechnology}},
-  year = {2006},
-  volume = {{5}},
-  number = {{1}},
-  pages = {{8-13}}
-}
-@article{Kao1994,
-  author = {Kao, H.P. and Verkman, A.S.},
-  title = {{Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position}},
-  journal = {{Biophysical Journal}},
-  year = {1994},
-  volume = {{67}},
-  number = {{3}},
-  pages = {{1291-1300}}
-}
-@article{Jo2007,
-  author = {Jo, Kyubong and Dhingra, Dalia M. and Odijk, Theo and de Pablo, Juan J. and Graham, Michael D. and Runnheim, Rod and Forrest, Dan and Schwartz, David C.},
-  title = {{A single-molecule barcoding system using nanoslits for DNA analysis}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2007},
-  volume = {{104}},
-  number = {{8}},
-  pages = {{2673-2678}}
-}
-@article{Speidel2003,
-  author = {Speidel, Michael and Jonas, Alexandr and Florin, Ernst-Ludwig},
-  title = {{Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging}},
-  journal = {{Optics Letters}},
-  year = {2003},
-  volume = {{28}},
-  number = {{2}},
-  pages = {{69-71}}
-}
-@article{Pounder2006,
-  author = {Pounder, June I. and Aldous, Wade K. and Woods, Gail L.},
-  title = {{Comparison of real-time polymerase chain reaction using the Smart Cycler and the Gen-Probe amplified Mycobacterium tuberculosis direct test for detection of M. tuberculosis complex in clinical specimens }},
-  journal = {{Diagnostic Microbiology and Infectious Disease}},
-  year = {2006},
-  volume = {{54}},
-  number = {{3}},
-  pages = {{217-222}}
-}
-@article{Harris1966,
-  author = {Harris, R.A. and Hearst, J.E.},
-  title = {{On Polymer Dynamics}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1966},
-  volume = {{44}},
-  number = {{7}},
-  pages = {{2595}}
-}
-@article{Willert1992,
-  author = {Willert, C. E. and Gharib, M.},
-  title = {{Three-dimensional particle imaging with a single camera}},
-  journal = {{Experiments in Fluids}},
-  year = {1992},
-  volume = {{12}},
-  pages = {{353-358}}
-}
-@article{Oberholzer1997,
-  author = {Oberholzer, Matthew R. and Wagner, Norman J. and Lenhoff, Abraham M.},
-  title = {{Grand canonical Brownian dynamics simulation of colloidal adsorption}},
-  journal = {{Journal of Chemical Physics}},
-  year = {1997},
-  volume = {{107}},
-  number = {{21}},
-  pages = {{9157-9167}}
-}
-@article{Wiggins2006,
-  author = {Wiggins, Paul A. and Nelson, Philip C.},
-  title = {{Generalized theory of semiflexible polymers}},
-  journal = {{Physical Review E}},
-  year = {2006},
-  volume = {{73}}
-}
-@article{Brenner1961,
-  author = {Brenner, Howard},
-  title = {{The slow motion of a sphere through a viscous fluid towards a plane surface}},
-  journal = {{Chemical Engineering Science}},
-  year = {1961},
-  volume = {{16}},
-  number = {{3-4}},
-  pages = {{242-251}}
-}
-@article{Bhattacharjee1987,
-  author = {Bhattacharjee, Somendra M. and Muthukumar, M.},
-  title = {{Statistical mechanics of solutions of semiflexible chains: A path integral formulation}},
-  journal = {{the Journal of Chemical Physics}},
-  year = {1987},
-  volume = {{86}},
-  number = {{1}},
-  pages = {{411-418}}
-}
-@article{Armani2007,
-  author = {Armani, Andrea M. and Kulkarni, Rajan P. and Fraser, Scott E. and Flagan, Richard C. and Vahala, Kerry J.},
-  title = {{Label-Free, Single-Molecule Detection with Optical Microcavities}},
-  journal = {{Sciencexpress}},
-  year = {2007}
-}
-@article{Hegner1999,
-  author = {Hegner, Martin and Smith, Steven B. and Bustamante, Carlos},
-  title = {{Polymerization and mechanical properties of single RecA-DNA filaments}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {1999},
-  volume = {{96}},
-  number = {{18}},
-  pages = {{10109-10114}}
-}
-@article{Zhu2001,
-  author = {Zhu, Heng and Snyder, Michael},
-  title = {{Protein arrays and microarrays}},
-  journal = {{Current Opinion in Chemical Biology}},
-  year = {2001},
-  volume = {{5}},
-  number = {{1}},
-  pages = {{40-45}}
-}
-@article{Wiggins2006b,
-  author = {Wiggins, P. A. and van der Heijden, T. and Moreno-Herrero, F. and Spakowitz, A. and Philips, R. and Windom, J. and Dekker, C. and Nelson, P. C.},
-  title = {{High flexibility of DNA on short length scales probed by atomic force microscopy}},
-  journal = {{Nature Nanotechnology}},
-  year = {2006},
-  volume = {{1}},
-  pages = {{137-141}}
-}
-@article{Zhang2007,
-  author = {Zhang, B. and Zerubia, J. and Olivio-Marin, J.-C.},
-  title = {{Gaussian approximations of fluorescence microscope point-spread function models}},
-  journal = {Applied Optics},
-  year = {2007},
-  volume = {{46}},
-  number = {{10}},
-  pages = {{1819-1829}}
-}
-@article{Scott1979,
-  author = {Scott, David W.},
-  title = {{On optimal and data-based histograms}},
-  journal = {{Biometrika}},
-  year = {1979},
-  volume = {{66}},
-  number = {{3}},
-  pages = {{605-610}}
-}
-@article{Mlodzianoski2009,
-  author = {Mlodzianoski, M.J. and Juette, M.F. and Beane, G.L. and Bewersdorf, J.},
-  title = {Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy},
-  journal = {{Optics Express}},
-  year = {2009},
-  volume = {{17}},
-  number = {{10}},
-  pages = {{8264-8277}}
-}
-@article{Carre2003,
-  author = {Carr\\\'e, Alain and Lacarri\\\`ere, Val\\\'erie and Birch, William},
-  title = {{Molecular interactions between DNA and an aminated glass substrate}},
-  journal = {{Journal of Colloid and Interface Science}},
-  year = {2003},
-  volume = {{260}},
-  pages = {{49-55}}
-}
-@article{Sage2005,
-  author = {Sage, Daniel and Neumann, Franck R. and Hediger, Florence and Gasser, Susan M. and Unser, Michael},
-  title = {{Automatic Tracking of Individual Fluorescence Particles: Application to the Study of Chromosome Dynamics}},
-  journal = {{IEEE Transactions on Image Processing}},
-  year = {2005},
-  volume = {{14}},
-  number = {{9}},
-  pages = {{1372-1383}}
-}
-@article{Dohoney2001,
-  author = {Dohoney, Kathleen M. and Gelles, Jeff},
-  title = {{Chi-Sequence recognition and DNA translocation by single RecBCD helicase/nuclease molecules}},
-  journal = {{Nature}},
-  year = {2001},
-  volume = {{409}},
-  pages = {{370-374}}
-}
-@article{Saleh2009,
-  author = {Saleh, O.A. and McIntosh, D.B. and Pincus, P. and Ribeck, N.},
-  title = {{Nonlinear Low-Force Elasticity of Single-Stranded DNA Molecules}},
-  journal = {{Physical Review Letters}},
-  year = {2009},
-  volume = {{102}},
-  number = {{6}},
-  pages = {{068301}}
-}
-@article{Moerner2007,
-  author = {Moerner, W.E.},
-  title = {{New directions in single-molecule imaging and analysis}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {2007},
-  volume = {{104}},
-  number = {{31}},
-  pages = {{12596-12602}}
-}
-@article{Spakowitz2005,
-  author = {Spakowitz, Andrew J. and Wang, Zhen-Gang},
-  title = {{End-to-end distance vector distribution with fixed end orientations for the wormlike chain model}},
-  journal = {{Physical Review E}},
-  year = {2005},
-  volume = {{72}}
-}
-@article{Spakowitz2004,
-  author = {Spakowitz, Andrew J. and Wang, Zhen-Gang},
-  title = {{Exact Results for a Semiflexible Polymer Chain in an Aligning Field}},
-  journal = {{Macromolecules}},
-  year = {2004},
-  volume = {{37}},
-  pages = {{5814-5823}}
-}
-@article{Spakowitz2006,
-  author = {Spakowitz, A. J.},
-  title = {{Wormlike chain statistics with twist and fixed ends}},
-  journal = {{Europhysics Letters (EPL)}},
-  year = {2006},
-  volume = {{73}},
-  number = {{5}},
-  pages = {{684-690}}
-}
-@article{Wieser2008,
-  author = {Wieser, Stefan and Axmann, Markus and Sch\\\"utz, Gerhard J.},
-  title = {{Versatile Analysis of Single-Molecule Tracking Data by Comprehensive Testing against Monte Carlo Simulations}},
-  journal = {{Biophysical Journal}},
-  year = {2008},
-  volume = {{95}},
-  number = {{12}},
-  pages = {{5988-6001}}
-}
-@phdthesis{Sarkar2002,
-  author = {Sarkar, Abhijit},
-  title = {{Theoretical micromechanics of DNA and DNA-protein complexes}},
-  year = {2002},
-  school = {{University of Illinois at Chicago}}
-}
-@article{Ha1995,
-  author = {Ha, B.-Y. and Thirumalai, D.},
-  title = {{A mean-field model for semiflexible chains}},
-  journal = {{Journal of Chemical Physics}},
-  year = {1995},
-  volume = {{103}},
-  number = {{21}},
-  pages = {{9408-9412}}
-}
-@misc{Beausang2006,
-  author = {Beausang, John F. and Zurla, Chiara and Sullivan, Luke and Finzi, Laura and Nelson, Philip C.},
-  title = {{Elementary simulation of tethered Brownian motion}},
-  year = {2006},
-  month = {October 1, 2006}
-}
-@article{Beausang2007,
-  author = {Beausang, John F. and Zurla, Chiara and Finzi, Laura and Sullivan, Luke and Nelson, Philip C.},
-  title = {{Elementary simulation of tethered Brownian motion}},
-  journal = {{American Journal of Physics}},
-  year = {2007},
-  volume = {{75}},
-  number = {{6}},
-  pages = {{520-523}}
-}
-@phdthesis{Guasto2008,
-  author = {Guasto, Jeffrey S.},
-  title = {{Micro- and Nano-scale Colloidal Dynamics Near Surfaces}},
-  year = {2008},
-  school = {{Brown University}}
-}
-@misc{Nelson2001,
-  author = {Nelson, Edward},
-  title = {{Dynamical Theories of Brownian Motion}},
-  year = {2001},
-  volume = {Second edition},
-  publisher = {{Princeton University Press}}
-}
-@article{Shivashankar1998,
-  author = {Shivashankar, G.V. and Stolovitzky, G. and Libchaber, A.},
-  title = {{Backscattering from a tethered bead as a probe of DNA flexibility}},
-  journal = {{Applied Physics Letters}},
-  year = {1998},
-  volume = {{73}},
-  number = {{3}},
-  pages = {{291-293}}
-}
-@phdthesis{Niu2004,
-  author = {Niu, Sanjun},
-  title = {{A Label-free, Fluorescence Based Assay for Microarray}},
-  year = {2004},
-  school = {{Virginia Polytechnic Institute and State University}}
-}
-@article{Hiraoka1987,
-  author = {Hiraoka, Yasushi and Sedat, John W. and Agard, David A.},
-  title = {{The Use of a Charge-Coupled Device for Quantitative Optical Microscopy of Biological Structures}},
-  journal = {{Science}},
-  year = {1987},
-  volume = {{238}},
-  pages = {{36-41}}
-}
-@article{Yamakawa1976,
-  author = {Yamakawa, Hiromi and Fujii, Motoharu and Shimada, Jiro},
-  title = {{Statistical mechanics of helical wormlike chains. II. Operational method and moments}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1976},
-  volume = {{65}},
-  number = {{6}},
-  pages = {{2371-2376}}
-}
-@article{Nelson2007,
-  author = {Nelson, Philip C.},
-  title = {{Colloidal particle motion as a diagnostic of DNA conformational transitions}},
-  journal = {{Current Opinion in Colloid & Interface Science}},
-  year = {2007}
-}
-@article{Allemand2003,
-  author = {Allemand, Jean-Francois and Bensimon, David and Croquette, Vincent},
-  title = {{Stretching DNA and RNA to probe their interactions with proteins}},
-  journal = {{Current Opinion in Structural Biology}},
-  year = {2003},
-  volume = {{13}},
-  pages = {{266-274}}
-}
-@article{Liu2007,
-  author = {Liu, Gang Logan and Long, Yi-Tao and Choi, Yeonho and Kang, Taewook and Lee, Luke P.},
-  title = {{Quantized plasmon quenching dips nanospectroscopy via plasmon resonance energy transfer}},
-  journal = {{Nature Methods}},
-  year = {2007},
-  volume = {{4}},
-  number = {{12}},
-  pages = {{1015-1017}}
-}
-@article{Prieve1990,
-  author = {Prieve, Dennis C. and Frej, Nasser A.},
-  title = {{Total Internal Reflection Microscopy: a Tool for Measuring Colloidal Forces}},
-  journal = {{Langmuir}},
-  year = {1990},
-  volume = {{6}},
-  number = {{2}},
-  pages = {{396-403}}
-}
-@article{Strick1996,
-  author = {Strick, T.R. and Allemand, J.-F. and Bensimon, D. and Bensimon, A. and Croquette, V.},
-  title = {{The Elasticity of a Single Supercoiled DNA Molecule}},
-  journal = {{Science}},
-  year = {1996},
-  volume = {{271}},
-  number = {{5257}},
-  pages = {{1835-1837}}
-}
-@article{Prieve1993,
-  author = {Prieve, Dennis C. and Walz, John Y.},
-  title = {{Scattering of an evanescent surface wave by a microscopic dielectric sphere}},
-  journal = {{Applied Optics}},
-  year = {1993},
-  volume = {{32}},
-  number = {{9}}
-}
-@article{Montanari2001,
-  author = {Montanari, Andrea and M\\\'ezard, Marc},
-  title = {{Hairpin Formation and Elongation of Biomolecules}},
-  journal = {{Physical Review Letters}},
-  year = {2001},
-  volume = {{86}},
-  number = {{10}},
-  pages = {{2178-2181}}
-}
-@article{Storm2003b,
-  author = {Storm, C. and Nelson, P. C.},
-  title = {{Theory of high-force DNA stretching and overstretching}},
-  journal = {{Physical Review E}},
-  year = {2003},
-  volume = {{67}},
-  number = {{5}},
-  pages = {{051906}}
-}
-@article{Bouchiat1999,
-  author = {Bouchiat, C. and Wang, M. D. and Allemand, J.-F. and Strick, T. and Block, S. M. and Croquette, V.},
-  title = {{Estimating the Persistence Length of a Worm-Like Chain Molecule from Force-Extension Measurements}},
-  journal = {{Biophysical Journal}},
-  year = {1999},
-  volume = {{76}},
-  pages = {{409-413}}
-}
-@article{Cady2007,
-  author = {Cady, Nathaniel C. and Strickland, Aaron D. and Batt, Carl A.},
-  title = {{Optimized linkage and quenching strategies for quantum dot molecular beacons}},
-  journal = {{Molecular and Cellular Probes}},
-  year = {2007},
-  volume = {{21}},
-  pages = {{116-124}}
-}
-@article{Fraden1993,
-  author = {Fraden, Seth and Maret, Georg},
-  title = {{Angular correlations and the isotropic-nematic phase transition in suspensions of tobacco mosaic virus}},
-  journal = {{Physical Review E}},
-  year = {1993},
-  volume = {{48}},
-  number = {{4}},
-  pages = {{2816-2838}}
-}
-@article{Bustamante1994,
-  author = {Bustamante, C. and Marko, J.F. and Siggia, E.D. and Smith, S.},
-  title = {{Entropic Elasticity of lambda-Phage DNA}},
-  journal = {{Science}},
-  year = {1994},
-  volume = {{265}},
-  number = {{5178}},
-  pages = {{1599-1601}}
-}
-@article{Rouse1953,
-  author = {Rouse, Prince E.},
-  title = {{A Theory of the Linear Viscoelastic Properties of Dilute Solutions of Coiling Polymers}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1953},
-  volume = {{21}},
-  number = {{7}},
-  pages = {{1272-1280}}
-}
-@article{Vanzi2003,
-  author = {Vanzi, Francesco and Vladimirov, Serguei and Knudsen, Charlotte R. and Goldman, Yale E. and Cooperman, Barry S.},
-  title = {{Protein synthesis by single ribosomes}},
-  journal = {{RNA}},
-  year = {2003},
-  volume = {{9}},
-  number = {{10}},
-  pages = {{1174-1179}}
-}
-@article{Lambert2006,
-  author = {Lambert, Meredith Newby and V\\\"ocker, Eva and Blumberg, Seth and Redemann, Stefanie and Gajraj, Arivalagan and Meiners, Jens-Christian and Walter, Nils. G.},
-  title = {{Mg2+-Induced Compaction of Single RNA Molecules Monitored by Tethered Particle Microscopy}},
-  journal = {{Biophysical Journal}},
-  year = {2006},
-  volume = {{90}},
-  pages = {{3672-3685}}
-}
-@article{Kessler2004,
-  author = {Kessler, David A. and Rabin, Yitzhak},
-  title = {{Distribution functions for filaments under tension}},
-  journal = {{Journal of Chemical Physics}},
-  year = {2004},
-  volume = {{121}},
-  number = {{2}},
-  pages = {{1155-1164}}
-}
-@article{Edwards1970,
-  author = {Edwards, S.F.},
-  title = {{Theory of the Single Chain}},
-  journal = {{Discussions of the Faraday Society}},
-  year = {1970},
-  volume = {{49}},
-  pages = {{43}}
-}
-@article{Bouzigues2008,
-  author = {Bouzigues, C. I. and Tabeling, P. and Bocquet, L.},
-  title = {{Nanofluidics in the Debye Layer at Hydrophilic and Hydrophobic Surfaces}},
-  journal = {{Physical Review Letters}},
-  year = {2008},
-  volume = {{101}},
-  number = {{11}},
-  pages = {{114503}}
-}
-@misc{Odijk2008,
-  author = {Odijk, Theo},
-  title = {{Private communication}},
-  year = {2008},
-  month = {05 September 2008}
-}
-@article{Kirkpatrick2008,
-  author = {Kirkpatrick, S.J. and Duncan, D.D.},
-  title = {{Performance of a gradient-based shift estimator in a spatially sparse data environment: tracking the sub-pixel motion of fluorescent particles}},
-  journal = {{Journal of Microscopy}},
-  year = {2008},
-  volume = {{212}},
-  number = {{1}},
-  pages = {{64-72}}
-}
-@article{Visnapuu2009,
-  author = {Visnapuu, Mari-Liis and Greene, Eric C.},
-  title = {{Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition}},
-  journal = {{Nature Structural & Molecular Biology}},
-  year = {2009},
-  volume = {{16}},
-  number = {{10}},
-  pages = {{1056-1062}}
-}
-@book{Conover1980,
-  author = {Conover, W.J.},
-  title = {{Practical Nonparametric Statistics}},
-  year = {1980},
-  publisher = {{Wiley}},
-  series = {{Wiley series in probability and mathematical statistics}},
-  address = {{New York}},
-  edition = {{Second edition}}
-}
-@article{Snyder1992,
-  author = {Snyder, Donald L. and Schulz, Timothy H. and O'Sullivan, Joseph A.},
-  title = {{Deblurring Subject to Nonnegativity Constraints}},
-  journal = {{IEEE Transactions on Signal Processing}},
-  year = {1992},
-  volume = {{40}},
-  number = {{5}},
-  pages = {{1143-1150}}
-}
-@article{DiMarzio1965b,
-  author = {DiMarzio, Edmund A. and McCrackin, Frank L.},
-  title = {{One-Dimensional Model of Polymer Adsorption}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1965},
-  volume = {{43}},
-  number = {{2}}
-}
-@article{DiMarzio1965a,
-  author = {DiMarzio, Edmund A.},
-  title = {{Proper Accounting of Conformations of a Polymer Near a Surface}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {1965},
-  volume = {{42}},
-  number = {{6}},
-  pages = {{2101-2106}}
-}
-@article{Netopilik1990,
-  author = {Netopil\\\'{\\\i}k, M.},
-  title = {{Orientation-dependent rotational diffusion coefficient of rod-like macromolecules in semi-dilute solution}},
-  journal = {{Rheologica Acta}},
-  year = {1990},
-  volume = {{29}},
-  pages = {{172-173}}
-}
-@article{Hamaker1937,
-  author = {Hamaker, H.C.},
-  title = {{The London-Van Der Waals Attraction Between Spherical Particles}},
-  journal = {{Physica }},
-  year = {1937},
-  volume = {{4}},
-  number = {{10}},
-  pages = {{1058-1072}}
-}
-@article{Cheezum2001,
-  author = {Cheezum, Michael K. and Walker, William F. and Guilford, William H.},
-  title = {{Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles}},
-  journal = {{Biophysical Journal}},
-  year = {2001},
-  volume = {{81}},
-  number = {{4}},
-  pages = {{2378-2388}}
-}
-@article{Ritchie2005,
-  author = {Ritchie, Ken and Sha, Xiao-Yuan and Kondo, Junko and Iwasawa, Kokoro and Fujiwara, Takahiro and Kusumi, Akihiro},
-  title = {{Detection of Non-Brownian Diffusion in the Cell Membrane in Single Molecule Tracking}},
-  journal = {{Biophysical Journal}},
-  year = {2005},
-  volume = {{88}},
-  number = {{3}},
-  pages = {{2266-2277}}
-}
-@incollection{Han2009,
-  author = {Han, Lin and Lui, Bertrand and Blumberg, Seth and Beausang, John F. and Nelson, Philip C. and Philips, Rob},
-  title = {{Calibration of Tethered Particle Motion Experiments}},
-  year = {2009},
-  volume = {150},
-  editor = {Benham, C.J. and Harvey, S. and Olson, W.K. and Sumners, D.W. and Swigon, D.},
-  publisher = {{Springer}},
-  series = {{The IMA Volumes in Mathematics and its Applications}},
-  booktitle = {{Mathematics of DNA Structure, Funcion and Interactions}}
-}
-@article{Towles2009,
-  author = {Towles, Kevin B. and Beausang, John F. and Garcia, H.G. and Philips, Rob and Nelson, Philip C.},
-  title = {{First-principles calculation of DNA looping in tethered particle experiments}},
-  journal = {{Physical Biology}},
-  year = {2009},
-  volume = {{6}},
-  pages = {{025001}}
-}
-@article{Pralle1999,
-  author = {Pralle, A. and Prummer, M. and Florin, E.-L and Stelzer, E.H.K. and H\\\"orber, J.K.H.},
-  title = {{Three-Dimensional High-resolution Particle Tracking for Optical Tweezers by Forward Scattered Light}},
-  journal = {{Microscopy Research and Technique}},
-  year = {1999},
-  volume = {{44}},
-  number = {{5}},
-  pages = {{378-386}}
-}
-@article{Wrobel2003,
-  author = {Wrobel, Gunnar and Schlingemann, Joerg and Hummerich, Lars and Kramer, Heidi and Lichter, Peter and Hahn, Meinhard},
-  title = {{Optimization of high-density cDNA-microarray protocols by 'design of experiments'}},
-  journal = {{Nucleic Acids Research}},
-  year = {2003},
-  volume = {{131}},
-  number = {{12}}
-}
-@article{Gibson1989,
-  author = {Gibson, Sarah Frisken and Lanni, Frederick},
-  title = {{Diffraction by a Circular Aperture as a Model for Three-Dimensional Microscopy}},
-  journal = {{Journal of the Optical Society of America A}},
-  year = {1989},
-  volume = {{6}},
-  number = {{9}},
-  pages = {{1357-1367}}
-}
-@article{Destainville2006,
-  author = {Destainville, Nicolas and Salom\\\'e, Laurence},
-  title = {{Quantification and Correction of Systematic Erros Due to Detector Time-Averaging in Single-Molecule Tracking Experiments}},
-  journal = {{Biophysical Journal}},
-  year = {2006},
-  volume = {{90}},
-  number = {{2}},
-  pages = {{L17-L19}}
-}
-@article{Sader1997,
-  author = {Sader, John Elie},
-  title = {{Accurate Analytic Formulae for the Far Field Effective Potential and Surface Charge Density of a Uniformly Charged Sphere}},
-  journal = {{Journal of Colloid and Interface Science}},
-  year = {1997},
-  volume = {{188}},
-  number = {{2}},
-  pages = {{508-510}}
-}
-@article{Durnin1987,
-  author = {Durnin, J. and Miceli, J.J., Jr. and Eberly, J.H.},
-  title = {{Diffraction-Free Beams}},
-  journal = {{Physical Review Letters}},
-  year = {1987},
-  volume = {{58}},
-  number = {{15}},
-  pages = {{1499-1501}}
-}
-@article{Moroz1998,
-  author = {Moroz, J. David and Nelson, Philip},
-  title = {{Entropic Elasticity of Twist-Storing Polymers}},
-  journal = {{Macromolecules}},
-  year = {1998},
-  volume = {{31}},
-  pages = {{6333-6347}}
-}
-@article{Peters1998,
-  author = {Peters, Inge M. and de Grooth, Bart G. and Schins, Juleon M. and Figdor, Carl G. and Greve, Jan},
-  title = {{Three dimensional single-particle tracking with nanometer resolution}},
-  journal = {{Review of Scientific Instruments}},
-  year = {1998},
-  volume = {{69}},
-  number = {{7}},
-  pages = {{2762-2766}}
-}
-@article{Kessler1991,
-  author = {Kessler, Christoph},
-  title = {{The digoxigenin:anti-digoxigening (DIG) technology - a survey on the concept and realization of a novel bioanalytical indicator system}},
-  journal = {{Molecular and Cellular Probes}},
-  year = {1991},
-  volume = {{5}},
-  pages = {{161-205}}
-}
-@article{Hyeon2006a,
-  author = {Hyeon, Changbong and Thirumalai, D.},
-  title = {{Kinetics of interior loop formation in semiflexible chains}},
-  journal = {{The Journal of Chemical Physics}},
-  year = {2006},
-  volume = {{124}},
-  number = {{10}},
-  pages = {{104905}}
-}
-@article{Moroz1997,
-  author = {Moroz, J. David and Nelson, Philip},
-  title = {{Torsional directed walks, entropic elasticity, and DNA twist stiffness}},
-  journal = {{Proceedings of the National Academy of Sciences of the USA}},
-  year = {1997},
-  volume = {{94}},
-  number = {{26}},
-  pages = {{14418-14422}}
-}
-@article{Massart2005,
-  author = {Massart, D.L. and Smeyers-Verbeke, J. and Capron, X. and Schlesier, Karin},
-  title = {{Visual Presentation of Data by Means of Box Plots}},
-  journal = {{LC-GC Europe}},
-  year = {2005},
-  volume = {{18}},
-  number = {{4}},
-  pages = {{215-218}}
-}
-@article{Hynes2001,
-  author = {Hynes, N. E. and Horsch, K. and Olayioye, M. A. and Badache, A.},
-  title = {The ErbB receptor tyrosine family as signal integrators},
-  journal = {Endocr Relat Cancer},
-  year = {2001},
-  volume = {8},
-  number = {3},
-  pages = {151-9}
-}
-@article{Michalet2001,
-  author = {Michalet, X. and Pinaud, F. and Lacoste, T. D. and Dahan, M. and Bruchez, M. P. and Alivisatos, A. P. and Weiss, S.},
-  title = {Properties of fluorescent semiconductor nanocrystals and their application to biological labeling},
-  journal = {Single Molecules},
-  year = {2001},
-  volume = {2},
-  number = {4},
-  pages = {261-276}
-}
-@article{Kuno2001,
-  author = {Kuno, M. and Fromm, D. P. and Hamann, H. F. and Gallagher, A. and Nesbitt, D. J.},
-  title = {"On"/"off" fluorescence intermittency of single semiconductor quantum dots},
-  journal = {Journal of Chemical Physics},
-  year = {2001},
-  volume = {115},
-  number = {2},
-  pages = {1028-1040}
-}
-@article{Martinez2003,
-  author = {Martinez, M. J. and Aragon, A. D. and Rodriguez, A. L. and Weber, J. M. and Timlin, J. A. and Sinclair, M. B. and Haaland, D. M. and Werner-Washburne, M.},
-  title = {Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays},
-  journal = {Nucleic Acids Research},
-  year = {2003},
-  volume = {31},
-  number = {4},
-  pages = {e18}
-}
-@article{Stauffer1997,
-  author = {Stauffer, T. P. and Meyer, T.},
-  title = {Compartmentalized IgE receptor-mediated signal transduction in living cells},
-  journal = {J Cell Biol},
-  year = {1997},
-  volume = {139},
-  number = {6},
-  pages = {1447-54}
-}
-@article{Hebert2005,
-  author = {Hebert, B. and Costantino, S. and Wiseman, P. W.},
-  title = {Spatiotemporal image correlation Spectroscopy (STICS) theory, verification, and application to protein velocity mapping in living CHO cells},
-  journal = {Biophysical Journal},
-  year = {2005},
-  volume = {88},
-  number = {5},
-  pages = {3601-3614}
-}
-@article{Pyenta2003,
-  author = {Pyenta, P. and Schwille, P. and Webb, W. and Holowka, D. and Baird, B.},
-  title = {Lateral diffusion of membrane lipid-anchored probes before and after aggregation of cell surface IgE-receptors},
-  journal = {J. Phys. Chem. A},
-  year = {2003},
-  volume = {107},
-  pages = {8310-8318}
-}
-@misc{CUDA,
-  author = {NVIDIA},
-  title = {Compute Unified Device Architecture (CUDA)},
-  year = {2007},
-  note = {{http://www.nvidia.com}}
-}
-@article{Petersen1993,
-  author = {Petersen, N. and Hoddelius, P.L. and Wiseman, P. and Seger, O. and Magnusson, K.},
-  title = {Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application},
-  journal = {Biophys. J.},
-  year = {1993},
-  volume = {65},
-  pages = {1135-1146}
-}
-@article{Hess2006,
-  author = {Hess, S. T. and Girirajan, T. P. K. and Mason, M. D.},
-  title = {Ultra-high resolution imaging by fluorescence photoactivation localization microscopy},
-  journal = {Biophysical Journal},
-  year = {2006},
-  volume = {91},
-  number = {11},
-  pages = {4258-4272}
-}
-@article{Kotula2004,
-  author = {Kotula, P. G. and Keenan, M. R. and Michael, J. R. },
-  title = {Automated analysis of SEM X-Ray spectral images: a powerful new microanalysis tool},
-  journal = {Microscopy and Microanalysis },
-  year = {2004},
-  volume = {9},
-  pages = {1-17}
-}
-@article{Yarden2001,
-  author = {Yarden, Y. and Sliwkowski, M. X.},
-  title = {Untangling the ErbB signalling network},
-  journal = {Nat Rev Mol Cell Biol},
-  year = {2001},
-  volume = {2},
-  number = {2},
-  pages = {127-37}
-}
-@article{MinGW,
-  author = {MinGW},
-  title = {Minimalist GNU for Windows},
-  year = {2008},
-  url = {http://www.mingw.org/}
-}
-@article{Shroff2008,
-  author = {Shroff, H. and Galbraith, C. G. and Galbraith, J. A. and Betzig, E.},
-  title = {Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics},
-  journal = {Nature Methods},
-  year = {2008},
-  volume = {5},
-  number = {5},
-  pages = {417-423}
-}
-@book{Jain1988,
-  author = {Jain, A. and Dubes, R.},
-  title = {Algorithms for Clustering Data},
-  year = {1988},
-  publisher = {Prentice Hall}
-}
-@article{Grecco2004,
-  author = {Grecco, H. E. and Lidke, K. A. and Heintzmann, R. and Lidke, D. S. and Spagnuolo, C. and Martinez, O. E. and Jares-Erijman, E. A. and Jovin, T. M.},
-  title = {Ensemble and single particle photophysical proper-ties (Two-Photon excitation, anisotropy, FRET, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells},
-  journal = {Microscopy Research and Technique},
-  year = {2004},
-  volume = {65},
-  number = {4-5},
-  pages = {169-179}
-}
-@article{VanBenthem2002,
-  author = {Van Benthem, M. H. and Keenan, M. R. and Haaland, D. M. },
-  title = {Application of equality constraints on variables during alternating least squares procedures},
-  journal = {Journal of Chemometrics},
-  year = {2002},
-  volume = {16},
-  pages = {613-622}
-}
-@article{Manley2008,
-  author = {Manley, S. and Gillette, J. M. and Patterson, G. H. and Shroff, H. and Hess, H. F. and Betzig, E. and Lippincott-Schwartz, J.},
-  title = {High-density mapping of single-molecule trajectories with photoactivated localization microscopy},
-  journal = {Nature Methods},
-  year = {2008},
-  volume = {5},
-  number = {2},
-  pages = {155-157}
-}
-@article{Wilson2000,
-  author = {Wilson, B. S. and Pfeiffer, J. R. and Oliver, J. M.},
-  title = {Observing FcepsilonRI signaling from the inside of the mast cell membrane},
-  journal = {Journal of Cell Biology},
-  year = {2000},
-  volume = {149},
-  number = {5},
-  pages = {1131-1142}
-}
-@article{Wilson2004,
-  author = {Wilson, B. S. and Steinberg, S. L. and Liederman, K. and Pfeiffer, J. R. and Surviladze, Z. and Zhang, J. and Samelson, L. E. and Yang, L. H. and Kotula, P. G. and Oliver, J. M.},
-  title = {Markers for detergent-resistant lipid rafts occupy distinct and dynamic domains in native membranes},
-  journal = {Molecular Biology of the Cell},
-  year = {2004},
-  volume = {15},
-  number = {6},
-  pages = {2580-2592}
-}
-@article{Timlin2005,
-  author = {Timlin, J. A. and Haaland, D. M. and Sinclair, M. B. and Aragon, A. D. and Martinez, M. J. and Werner-Washburne, M.},
-  title = {Hyperspectral microarray scanning: impact on the accuracy and reliability of gene expression data},
-  journal = {BMC Genomics},
-  year = {2005},
-  volume = {6},
-  number = {1},
-  pages = {72}
-}
-@article{Forney1973,
-  author = {Forney, G. D.},
-  title = {Viterbi Algorithm},
-  journal = {Proceedings of the Ieee},
-  year = {1973},
-  volume = {61},
-  number = {3},
-  pages = {268-278}
-}
-@article{Szent-Gyorgyi2008,
-  author = {Szent-Gyorgyi, C. and Schmidt, B. F. and Creeger, Y. and Fisher, G. W. and Zakel, K. L. and Adler, S. and Fitzpatrick, J. A. J. and Woolford, C. A. and Yan, Q. and Vasilev, K. V. and Berget, P. B. and Bruchez, M. P. and Jarvik, J. W. and Waggoner, A.},
-  title = {Fluorogen-activating single-chain antibodies for imaging cell surface proteins (vol 26, pg 235, 2008)},
-  journal = {Nature Biotechnology},
-  year = {2008},
-  volume = {26},
-  number = {4},
-  pages = {470-470}
-}
-@article{Andrews2008,
-  author = {Andrews, N. L. and Lidke, K. A. and Pfeiffer, J. R. and Burns, A. R. and Wilson, B. S. and Oliver, J. M. and Lidke, D. S.},
-  title = {Actin restricts {Fc}$\epsilon${RI} diffusion and facilitates antigen-induced receptor immobilization},
-  journal = {Nature Cell Biology},
-  year = {2008},
-  volume = {10},
-  number = {8},
-  pages = {955-963}
-}
-@inproceedings{Lidke2007ieee,
-  author = {Lidke, K. A. and Heintzmann, R.},
-  title = {Localization fluorescence microscopy using quantum dot blinking},
-  year = {2007},
-  pages = {936-939},
-  address = {Metro Washington DC, USA. },
-  booktitle = {4th IEEE International Symposium on Biomedical Imaging}
-}
-@article{Jinschek2010,
-  author = {Jinschek, J.R. and Yucelen, E. and Calderon, H.A. and Freitag, B.},
-  title = {Quantitative atomic 3-D imaging of single/double sheet graphene structure},
-  journal = {Carbon},
-  year = {2010}
-}
-@article{Bates2007,
-  author = {Bates, M. and Huang, B. and Dempsey, G. T. and Zhuang, X.},
-  title = {Multicolor super-resolution imaging with photo-switchable fluorescent probes},
-  journal = {Science},
-  year = {2007},
-  volume = {317},
-  number = {5845},
-  pages = {1749-53}
-}
-@book{Bos2007,
-  author = {A. van den Bos},
-  title = {Parameter Estimation for Scientists and Engineers},
-  year = {2007},
-  publisher = {Wiley \& Sons},
-  address = {New Jersey}
-}
-@article{Wolter2009,
-  author = {Wolter, S. and Schuttpelz, M. and Tescherepanow, M. and Linde, van de S. and Heilemann, M. and Sauer, M.},
-  title = {Real-time computation of subdiffraction-resolution fluorescence images},
-  journal = {Journal of Microscopy},
-  year = {2010},
-  volume = {237},
-  number = {1},
-  pages = {12-22}
-}
-@article{Bock2007,
-  author = {Bock, H. and Geisler, C. and Wurm, C. A. and Von Middendorff, C. and Jakobs, S. and Schonle, A. and Egner, A. and Hell, S. W. and Eggeling, C.},
-  title = {Two-color far-field fluorescence nanoscopy based on photoswitchable emitters},
-  journal = {Applied Physics B-Lasers and Optics},
-  year = {2007},
-  volume = {88},
-  number = {2},
-  pages = {161-165}
-}
-@article{Rust2006,
-  author = {Rust, M. J. and Bates, M. and Zhuang, X. W.},
-  title = {Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy {(STORM)}},
-  journal = {Nature Methods},
-  year = {2006},
-  volume = {3},
-  number = {10},
-  pages = {793-795}
-}
-@article{Enderlein2006,
-  author = {Enderlein, J. and Toprak, E. and Selvin, P.R.},
-  title = {Polariztion effect on position accuracy of fluorophore localization},
-  journal = {Optics Express},
-  year = {2006},
-  volume = {14},
-  number = {18},
-  pages = {8112-8120}
-}
-@article{Enderlein2000,
-  author = {Enderlein, J.},
-  title = {Theoretical Study of detection of a dipole emitter through an objective with high numerical aperture},
-  journal = {Optics Letters},
-  year = {2000},
-  volume = {25},
-  number = {9},
-  pages = {634-636}
-}
-@article{Dahan2003,
-  author = {Dahan, M. and Levi, S. and Luccardini, C. and Rostaing, P. and Riveau, B. and Triller, A.},
-  title = {Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking},
-  journal = {Science},
-  year = {2003},
-  volume = {302},
-  number = {5644},
-  pages = {442-445}
-}
-@misc{OberEstimationtool,
-  author = {Ober, R.J. and Ward, E.S.},
-  title = {Estimation tool},
-  year = {2009},
-  note = {University of Texas, Southwestern {http://www4.utsouthwestern.edu/wardlab}}
-}
-@article{Jin2007,
-  author = {Jin, S. and Haggie, P. M. and Verkman, A. S.},
-  title = {Single-particle tracking of membrane protein diffusion in a potential: Simulation, detection, and application to confined diffusion of CFTR Cl- channels},
-  journal = {Biophysical Journal},
-  year = {2007},
-  volume = {93},
-  number = {3},
-  pages = {1079-1088}
-}
-@article{Jin2007b,
-  author = {Jin, S. and Verkman, A. S.},
-  title = {Single particle tracking of complex diffusion in membranes: Simulation and detection of barrier, raft, and interaction phenomena},
-  journal = {Journal of Physical Chemistry B},
-  year = {2007},
-  volume = {111},
-  number = {14},
-  pages = {3625-3632}
-}
-@article{Rasnik2006,
-  author = {Rasnik, I. and McKinney, S. A. and Ha, T.},
-  title = {Nonblinking and longlasting single-molecule fluorescence imaging},
-  journal = {Nature Methods},
-  year = {2006},
-  volume = {3},
-  number = {11},
-  pages = {891-893}
-}
-@article{Hell1992,
-  author = {Hell, S. and Stelzer, E. H. K.},
-  title = {Fundamental Improvement of Resolution with a 4Pi-Confocal Fluorescence Microscope Using 2-Photon Excitation},
-  journal = {Optics Communications},
-  year = {1992},
-  volume = {93},
-  number = {5-6},
-  pages = {277-282}
-}
-@article{LidkeDS2007,
-  author = {Lidke, D. S. and Andrews, N. L. and Pfeiffer, J. R. and Jones, H. D. T. and Sinclair, M. B. and Haaland, D. M and Burns, A. R. and Wilson, B. S. and M., Oliver. J. and Lidke, K. A.},
-  title = {Exploring membrane protein dynamics by multicolor single quantum dot imaging using wide field, TIRF, and hyperspectral microscopy},
-  journal = {Proc. of SPIE},
-  year = {2007},
-  volume = {6448},
-  pages = {6448Y1-8}
-}
-@article{Warren1997,
-  author = {Warren, D. W. and Hackwell, J. A. and Gutierrez, D. J.},
-  title = {Compact prism spectrographs based on aplanatic principles},
-  journal = {Optical Engineering},
-  year = {1997},
-  volume = {36},
-  number = {4},
-  pages = {1174-1182}
-}
-@article{Schlessinger2002,
-  author = {Schlessinger, J.},
-  title = {Ligand-induced, receptor-mediated dimerization and activation of EGF receptor},
-  journal = {Cell},
-  year = {2002},
-  volume = {110},
-  number = {6},
-  pages = {669-72}
-}
-@article{Arndt-Jovin2006,
-  author = {Arndt-Jovin, D. J. and Lopez-Quintela, M. A and Lidke, D. S. and Rodr\'{i}guez, M. J. and Santos, F. M. and Lidke, K. A. and Hagen, G. M. and Jovin, T. M.},
-  title = {In vivo cell imaging with semiconductor quantum dots and noble-metal nanodots},
-  journal = {Proc. of SPIE},
-  year = {2006},
-  volume = {6096, 60960P}
-}
-@article{Ehrensperger2007,
-  author = {Ehrensperger, M. V. and Hanus, C. and Vannier, C. and Triller, A. and Dahan, M.},
-  title = {Multiple association states between glycine receptors and gephyrin identified by SPT analysis},
-  journal = {Biophysical Journal},
-  year = {2007},
-  volume = {92},
-  number = {10},
-  pages = {3706-3718}
-}
-@article{Gilfillan2006,
-  author = {Gilfillan, A. M. and Tkaczyk, C.},
-  title = {Integrated signalling pathways for mast-cell activation},
-  journal = {Nat Rev Immunol},
-  year = {2006},
-  volume = {6},
-  number = {3},
-  pages = {218-30}
-}
-@article{Eggeling2009,
-  author = {Eggeling, C. and Ringemann, C. and Medda, R. and 
-Schwarzmann, G. and Sandhoff, K. and Polyakova, S. and Belov, V.N. and Hein, B. and Middendorff, C. v. and {Sch\"onle}, A. and  Hell, S. W.},
-  title = {Direct observation of the nanoscale dynamics of membrane lipids in a living cell},
-  journal = {Nature},
-  year = {2009},
-  volume = {457},
-  pages = {1159-1163}
-}
-@article{Huang2008a,
-  author = {Huang, B. and Jones, S.A. and Brandenburg, B. and Zhuang, X.},
-  title = {Whole-cell 3D STORM reveals interactions between
-cellular structures with nanometer-scale resolution},
-  journal = {Nature Methods},
-  year = {2008},
-  volume = {5},
-  number = {12},
-  pages = {1047-1053}
-}
-@article{Hess2007,
-  author = {Hess, S.T. and Gould, T.J. and Gudhetl, M.V. and Maas, S.A. and Mills, K.D. and Zimmerberg, J.},
-  title = {Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories},
-  journal = {Proceedings of the National Academy of Sciences},
-  year = {2007},
-  volume = {104},
-  number = {44},
-  pages = {17370-17375}
-}
-@article{Gustafsson2005,
-  author = {Gustafsson, M. G. L.},
-  title = {Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution},
-  journal = {Proceedings of the National Academy of Sciences of the United States of America},
-  year = {2005},
-  volume = {102},
-  number = {37},
-  pages = {13081-13086}
-}
-@article{Egner2007,
-  author = {Egner, A. and Geisler, C. and Von Middendorff, C. and Bock, H. and Wenzel, D. and Medda, R. and Andresen, M. and Stiel, A. C. and Jakobs, S. and Eggeling, C. and Schonle, A. and Hell, S. W.},
-  title = {Fluorescence nanoscopy in whole cells by asynchronous localization of photoswitching emitters},
-  journal = {Biophysical Journal},
-  year = {2007},
-  volume = {93},
-  number = {9},
-  pages = {3285-3290}
-}
-@article{Bates2005,
-  author = {Bates, M. and Blosser, T. R. and Zhuang, X. W.},
-  title = {Short-range spectroscopic ruler based on a single-molecule optical switch},
-  journal = {Physical Review Letters},
-  year = {2005},
-  volume = {94},
-  number = {10},
-  pages = {-}
-}
-@article{Sinclair2006,
-  author = {Sinclair, M. B. and Haaland, D. M. and Timlin, J. A. and Jones, H. D.},
-  title = {Hyperspectral confocal microscope},
-  journal = {Appl Opt},
-  year = {2006},
-  volume = {45},
-  number = {24},
-  pages = {6283-91}
-}
-@article{Sinclair2004,
-  author = {Sinclair, M. B. and Timlin, J. A. and Haaland, D. M. and Werner-Washburne, M.},
-  title = {Design, construction, characterization, and application of a hyperspectral microarray scanner},
-  journal = {Applied Optics},
-  year = {2004},
-  volume = {43},
-  number = {10},
-  pages = {2079-2088}
-}
-@article{Sark2002,
-  author = {Sark, W. G. J. H. M. van and Frederix, P. L. T. M. and Bol, A. A. and Gerritsen, H. C. and Meijerink, A.},
-  title = {Blueing, bleaching, and blinking of single CdSe/ZnS quantum dots},
-  journal = {Chemphyschem},
-  year = {2002},
-  volume = {3},
-  number = {10},
-  pages = {871-879}
-}
-@book{Haaland2003,
-  author = {Haaland, D. M. and Timlin, J. A. and Sinclair, M. B. and Van Benthem, M. H. and Martinez, M. J. and Aragon, A. D. and Werner-Washburne, M.},
-  title = {Multivariate curve resolution for hyperspectral image analysis: applications to microarray technology},
-  year = {2003},
-  volume = {4959},
-  publisher = {International Society for Optical Engineering},
-  series = {In Spectral Imaging: Instrumentation, Applications, and Analysis},
-  address = {San Jose, CA.}
-}
-@article{Geisler2007,
-  author = {Geisler, C. and Schonle, A. and von Middendorff, C. and Bock, H. and Eggeling, C. and Egner, A. and Hell, S. W.},
-  title = {Resolution of lambda/10 in fluorescence microscopy using fast single molecule photo-switching},
-  journal = {Applied Physics a-Materials Science and Processing},
-  year = {2007},
-  volume = {88},
-  number = {2},
-  pages = {223-226}
-}
-@article{Metzger1992,
-  author = {Metzger, H.},
-  title = {Transmembrane signalling: the joy of aggregation},
-  journal = {Journal of Immunology },
-  year = {1992},
-  volume = {149},
-  pages = {1477-1487}
-}
-@article{Hanser2004,
-  author = {Hanser, B. M. and Gustafsson, M. G. L. and Agard, D. A. and Sedat, J. W.},
-  title = {Phase-retrieved pupil functions in wide-field fluorescence microscopy},
-  journal = {Journal of Microscopy-Oxford},
-  year = {2004},
-  volume = {216},
-  pages = {32-48}
-}
-@book{Bharucha-Reid1960,
-  author = {Bharucha-Reid, A. T},
-  title = {Elements of the Theory of Markov Processes and Their Applications},
-  year = {1960},
-  publisher = {New York: McGraw-Hill}
-}
-@article{Herring2010,
-  author = {Herring, R.A. and Saitoh, K. and Tanaka, N. and Tanji, T.},
-  title = {Coherent electron interference from amorphous
-TEM specimens},
-  journal = {Journal of Electron Microscopy},
-  year = {2010}
-}
-@article{Schmidt2008,
-  author = {Schmidt, R. and Wurm, C.A. and Jakobs, S. and Engelhardt, J. and Egner, A. and Hell, S.W.},
-  title = {Spherical nanosized focal spots unravels the interior of cells},
-  journal = {Nature Methods},
-  year = {2008},
-  volume = {5},
-  number = {6},
-  pages = {539-544}
-}
-@article{Kner2009,
-  author = {Kner, P. and Chhun, B.B. and Griffs, E.R. and Winoto, L. and Gustafsson, M.G.L.},
-  title = {Super-resolution video microscopy of live cells by structured illumination},
-  journal = {Nature Methods},
-  year = {2009},
-  volume = {6},
-  number = {5},
-  pages = {339-344}
-}
-@article{Heintzmann2009,
-  author = {Heintzmann, R. and Gustafsson, M.G.L.},
-  title = {Subdiffraction resolution in continuous samples},
-  journal = {Nature Photonics},
-  year = {2009},
-  volume = {3},
-  pages = {362-364}
-}
-@article{Boulanger2010,
-  author = {Boulanger, J. and Kervrann, C. and Bouthemy, P. and Elbau, P. and Sibarita, J.-B. and Salamero, J.},
-  title = {Patch-Based Nonlocal Functional for Denoising
-Fluorescence Microscopy Image Sequences},
-  journal = {IEEE Transactions on Medical Image Processing},
-  year = {2010},
-  volume = {29},
-  number = {2},
-  pages = {442-454}
-}
-@article{Carlton2010,
-  author = {Carlton, P.M. and Boulanger, J. and Kervrann, C. and Sibarita, J.-B. and Salamero, J. and Gordon-Messer, S. and Bressan, D. and Haber, J.E. and Haase, S. and Shao, L. and Winoto, L. and Matsuda, A. and Kner, P. and Uzawa, S. and Gustafsson, M.G.F. and Kam, Z. and Agard, D.A. and Sedat, J.W.},
-  title = {Fast live simultaneous multiwavelength four-dimensional optical microscopy},
-  journal = {Proceedings of the National Academy of Sciences},
-  year = {2010}
-}
-@article{Grabenbauer2005,
-  author = {Grabenbauer, M. and Geerts, W.J. and Fernadez-Rodriguez, J. and Hoenger, A. and Koster, A.J. and Nilsson, T.},
-  title = {Correlative microscopy and electron tomography of GFP through photooxidation},
-  journal = {Nature Methods},
-  year = {2005},
-  volume = {2},
-  pages = {857-862}
-}
-@article{Folling2008,
-  author = {{F\"olling}, J. and Bossi, M. and Bock, H. and Medda, R. and Wurm, C.A. and Hein, B. and Jacobs, S. and Eggeling, C. and Hell, S.W.},
-  title = {Fluorescence nanoscopy by ground-state depletion and single-molecule return},
-  journal = {Nature Methods},
-  year = {2008},
-  volume = {5},
-  pages = {943-945}
-}
-@article{Agronskaia2008,
-  author = {Agronskaia, A.V. and Valtentijn, J.A. and Driel, L.F. van and Schneidenberg, C. and Humbel, B.M. and Henegouwen, P. and Verkleij, A.J. and Koster, A.J. and Gerritsen, H.C.},
-  title = {Integrated fluorescence and transmission electron microscopy},
-  journal = {Journal of Structural Biology},
-  year = {2008},
-  volume = {164},
-  number = {2},
-  pages = {183-189}
-}
-@article{Aguet2009,
-  author = {Aguet, F. and Geissbuhler, S. and Marki, I. and Lasser, T. and Unser, M.},
-  title = {Super-resolution orientation estimation and localization of fluorescent dipoles using 3-D steerable filters},
-  journal = {Optics Express},
-  year = {2009},
-  volume = {17},
-  number = {8},
-  pages = {6829}
-}
-@article{Giepmans2005,
-  author = {Giepmans, B.N. and Deerinck, T.J. and Smarr, B.L. and Jones, Y.Z. and Ellisman, M.H.},
-  title = {Correlated light and electron microscopic imaging of multiple endogenous proteins using quantum dots},
-  journal = {Nature Methods},
-  year = {2005},
-  volume = {10},
-  pages = {743-749}
-}
-@article{Stallinga2004,
-  author = {Stallinga, S.},
-  title = {Light distribution close to focus in biaxially       birefringent media
-},
-  journal = {Journal of the Optical Society of America A},
-  year = {2004},
-  volume = {21},
-  number = {9},
-  pages = {1785-1788}
-}
-@article{Wang2010,
-  author = {Wang, C. and Gao, X. and Su, X.},
-  title = {In vitro and in vivo imaging with quantum dots },
-  journal = {Analytical and Bioanalytical Chemistry },
-  year = {2010},
-  volume = {397},
-  number = {4},
-  pages = {1397-1415}
-}
-@article{Jamieson2007,
-  author = {Jamieson, T. and Bakhshi, R. and Petrova, D. and Pocock, R. and Imani, M. and Seifalian, A.M.},
-  title = {Biological applications of quantum dots },
-  journal = {Biomaterials},
-  year = {2007},
-  volume = {28},
-  number = {31},
-  pages = {4717-4732}
-}
-@article{Abraham2009,
-  author = {Abraham, A.V. and Ram, S. and Chao, J. and Ward, E.S. and Ober, R.J.},
-  title = {Quantitative study of single molecule location estimation techniques },
-  journal = {Optics Express},
-  year = {2009},
-  volume = {17},
-  number = {26},
-  pages = {23352-23373}
-}
-@article{Chao2009,
-  author = {Chao, J. and Ram, S. and Ward, E.S. and Ober, R.J.},
-  title = {A comparative study of high resolution microscopy imaging modalities using a three-dimensional resolution measure},
-  journal = {Optics Express},
-  year = {2009},
-  volume = {17},
-  number = {26},
-  pages = {24377-24401}
-}
-@article{Ram2008,
-  author = {Ram, S. and Prabhar, P. and Chao, J. and Ward, E.S. and Ober, R.J.},
-  title = {High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells },
-  journal = {Biophysical Journal},
-  year = {2008},
-  volume = {95},
-  number = {12},
-  pages = {6025-6043}
-}
-@article{Wilson1997,
-  author = {Wilson, T. and Juskaitis, R. and Higdon, P.D.},
-  title = {The imaging of dielectric point scatterers in conventional and confocal polarisation microscopes},
-  journal = {Optics Communications},
-  year = {1997},
-  volume = {141},
-  pages = {298-313}
-}
-@article{Stallinga2010,
-  author = {Stallinga, S. and Rieger, B.},
-  title = {Accuracy of the {Gaussian} Point Spread Function model in 2D localization microscopy
-},
-  journal = {Optics Express},
-  year = {2010},
-  note = {accepted}
-}
-@article{Barrett1995,
-  author = {Barrett, H. H. and Denny, J.L. and Wagner, R.F. and Myers, K.J.},
-  title = {Objective assessment of image quality. II. Fisher information, Fourier crosstalk, and
-figures of merit for task performance},
-  journal = {Journal of the Optical Society of America A},
-  year = {1995},
-  volume = {12},
-  number = {5},
-  pages = {834-853}
-}
-@article{Foreman2007,
-  author = {Foreman, M.R. and Sherif, S.S. and {T\"or\"ok}, P.},
-  title = {Photon statistics in single molecule
-orientational imaging},
-  journal = {Optics Express},
-  year = {2007},
-  volume = {15},
-  number = {21},
-  pages = {13597-13606}
-}
-@article{Haeberle2003,
-  author = {{Haeberl\'e}, O. and Ammar, M. and Furukawa, H. and Tenjimbayashi, K. and {T\"or\"ok}, P.},
-  title = {Point spread function of optical microscopes
-imaging through stratified media},
-  journal = {Optics Express},
-  year = {2003},
-  volume = {11},
-  number = {22},
-  pages = {2964-2969}
-}
-@article{McGuire1994,
-  author = {McGuire, J.P. Jr. and Chipman, R.A.},
-  title = {Polarization aberrations.
-1. Rotationally symmetric optical systems},
-  journal = {Applied Optics},
-  year = {1994},
-  volume = {33},
-  number = {22},
-  pages = {5080-5100}
-}
-@article{McGuire1994a,
-  author = {McGuire, J.P. Jr. and Chipman, R.A.},
-  title = {Polarization aberrations.
-2. Tilted and decentered optical systems},
-  journal = {Applied Optics},
-  year = {1994},
-  volume = {33},
-  number = {22},
-  pages = {5101-5107}
-}
-@article{Muller2005,
-  author = {{M\"uller}, S.P. and Abbey, C.K. and Rybicki, F.J. and Moore, S.C. and Kijewski, M.F.},
-  title = {Measures of performance in nonlinear estimation
-tasks: prediction of estimation performance at low signal-to-noise ratio},
-  journal = {Physics in Medicine and Biology},
-  year = {2005},
-  volume = {50},
-  pages = {3697-3715}
-}
-@article{Ji2010,
-  author = {Ji, N. and Milkie, D.E. and Betzig, E.},
-  title = {Adaptive optics via pupil segmentation for
-high-resolution imaging in biological tissues},
-  journal = {Nature Methods},
-  year = {2010},
-  volume = {7},
-  number = {2},
-  pages = {141-150}
-}
-@article{Wombacher2010,
-  author = {Wormbacher, R. and Heidbreder, M. and Linde, S. van de and Sheetz, M.P. and Heilemann, M. and Cornish, V.W. and Sauer, M.},
-  title = {Live-cell super-resolution imaging with trimethoprim conjugates},
-  journal = {Nature Methods},
-  year = {2010},
-  volume = {7},
-  number = {9},
-  pages = {717-722}
-}
-@article{Henriques2010,
-  author = {Henriques, R. and Lelek, M. and Fornasiero, E.F. and Valtorta, F. and Zimmer, C. and Mhlanga, M.M.},
-  title = {Quick{PALM}: 3D real-time photoactivation nanoscopy image processing in {ImageJ}},
-  journal = {Nature Methods},
-  year = {2010},
-  volume = {7},
-  number = {5},
-  pages = {339-340}
-}
-@article{Dertinger2009,
-  author = {Dertinger, T. and Colyer, R. and Iyer, G. and Weiss, S. and Enderlein, J.},
-  title = {Fast, background-free, {3D} super-resolution optical fluctuation imaging {(SOFI)}},
-  journal = {Proceedings of the National Academy of Sciences},
-  year = {2009},
-  volume = {106},
-  number = {52},
-  pages = {22287-22292}
-}
-@article{Dertinger2010,
-  author = {Dertinger, T. and Colyer, R. and Vogel, R. and  Enderlein, J. and Weiss, S.},
-  title = {Achieving increased resolution and more pixels
-with Superresolution Optical Fluctuation
-Imaging {(SOFI)}},
-  journal = {Optics Express},
-  year = {2010},
-  volume = {18},
-  number = {18},
-  pages = {18875-11885}
-}
-@article{Landau1967,
-  author = {Landau, H.},
-  title = {Necessary  density conditions for sampling and interpolation of certain entire function},
-  journal = {Acta Mathematica},
-  year = {1967},
-  volume = {117},
-  number = {1},
-  pages = {37-52}
-}
-@article{Heilemann2008,
-  author = {Heilemann, M. and Linde, S. van de and {Sch\"uttpelz}, M. and Kasper, R. and Seefeldt, B. and Mukherjee, A. and Tinnefeld, P. and Sauer, M.},
-  title = {Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes},
-  journal = {Angewannte Chemie},
-  year = {2008},
-  volume = {47},
-  number = {33},
-  pages = {6172-6176}
-}
+  
Index: /qipapers.html
===================================================================
--- /qipapers.html	(revision 169)
+++ /qipapers.html	(revision 170)
@@ -14,5 +14,5 @@
      (see http://www.lri.fr/~filliatr/bibtex2html/),
      with the following command:
-     /usr/bin/bibtex2html -o - -t qipapers.html -s plain /tmp/tmpWQXdqi.bib  -->
+     /usr/bin/bibtex2html -o - -t qipapers.html -s plain /tmp/tmp0UQe6y.bib  -->
 
 <h1>qipapers.html</h1>
@@ -29679,5 +29679,6 @@
 <td class="bibtexitem">
 A.&nbsp;Egner, C.&nbsp;Geisler, C.&nbsp;Von&nbsp;Middendorff, H.&nbsp;Bock, D.&nbsp;Wenzel, R.&nbsp;Medda,
-  M.&nbsp;Andresen, A.&nbsp;C. Stiel, S.&nbsp;Jakobs, C.&nbsp;Eggeling, A.&nbsp;Schonle, and S.&nbsp;W. Hell.
+  M.&nbsp;Andresen, A.&nbsp;C. Stiel, S.&nbsp;Jakobs, C.&nbsp;Eggeling, A.&nbsp;Sch&ouml;nle, and S.&nbsp;W.
+  Hell.
  Fluorescence nanoscopy in whole cells by asynchronous localization of
   photoswitching emitters.
