Changeset 230


Ignore:
Timestamp:
02/01/11 15:17:49 (15 years ago)
Author:
qipapers
Message:

commit via qipapers

File:
1 edited

Legend:

Unmodified
Added
Removed
  • qipapers.bib

    r229 r230  
    13381338@article{Medalia2002,
    13391339  year = {2002},
    1340   title = {Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelectron Tomography},
    1341   pages = {1209-1213},
    1342   journal = {Ultramicroscopy},
    1343   volume = {298},
    1344   author = {Medalia, O. and Weber, I. and Frangakis, A.S. and Nicastro, D. and Gerisch, G. and Baumeister, W.}
    1345 }
    1346 @article{Wang1990,
    1347   number = {1},
    1348   year = {1990},
    1349   title = {Electron-energy-loss and optical-transmittance investiationf of $Bi_2SR_2CaCu_2O_8$},
    1350   pages = {420-425},
    1351   journal = {Physical Review B},
    1352   volume = {42},
    1353   author = {Wang, Y.Y. and Feng, G. and Ritter, A.L.}
    1354 }
    1355 @misc{LeachXXXX,
    1356   title = {Singular Value Decomposition -- A Primer},
    1357   howpublished = {Web download-able. Department of Computer Science, Brown University, Providence, U.S.A.},
    1358   author = {Leach, S.}
    1359 }
    1360 @article{Majumdar2000,
    1361   number = {6},
    1362   year = {2000},
    1363   title = {Classification of Cereal Grains Using Machine Vision: {III}. Texture Models},
    1364   pages = {1681--1687},
    1365   journal = {Transactions of the American Society of Agricultural Engineers},
    1366   volume = {43},
    1367   author = {Majumdar, S. and Jayas, D.S.}
    1368 }
    1369 @techreport{Shewchuk1996,
    1370   year = {1996},
    1371   title = {Adaptive Precision Floating-Point Arithmetic and Fast Robust Geometric Predicates},
    1372   institution = {School of Computer Science, Carnegie Mellon University, USA},
    1373   author = {Shewchuk, J.R.}
    1374 }
    1375 @mastersthesis{Bezuijen2003,
    1376   month = {September},
    1377   year = {2003},
    1378   title = {Improved sub-pixel shift estimation in 2D gray-value images},
    1379   address = {Delft, The Netherlands},
    1380   school = {Delft University of Technology},
    1381   author = {Bezuijen, M.}
    1382 }
    1383 @article{Marr1980,
    1384   year = {1980},
    1385   title = {Theory of edge detection},
    1386   pages = {187--217},
    1387   journal = {Proceedings of the Royal Society of London B},
    1388   volume = {207},
    1389   author = {Marr, D. and Hildreth, E.}
    1390 }
    1391 @book{Marr1982,
    1392   year = {1982},
    1393   title = {Vision},
    1394   address = {San Francisco, USA},
    1395   publisher = {Freeman},
    1396   author = {Marr, D.}
    1397 }
    1398 @article{Gerig1992,
    1399   number = {2},
    1400   month = {June},
    1401   year = {1992},
    1402   title = {Nonlinear anisotropic filtering of {MRI} data},
    1403   pages = {221--232},
    1404   journal = {IEEE Transactions on Medical Imaging},
    1405   volume = {11},
    1406   author = {Gerig, G. and {K\"ubler}, O. and Kikinis, R. and Jolesz, F.A.}
    1407 }
    1408 @article{Runnels1995,
    1409   number = {4},
    1410   year = {1995},
    1411   title = {Theory and application of fluorescence homotransfer to melittin oligomerization},
    1412   pages = {1569-1583},
    1413   journal = {Biophysical Journal},
    1414   volume = {69},
    1415   author = {Runnels, L.W. and Scarlata, S.F.}
    1416 }
    1417 @article{Scharcanski1999,
    1418   number = {11},
    1419   month = {November},
    1420   year = {1999},
    1421   title = {Local Spatial Anisotropy and Its Variability},
    1422   pages = {393--397},
    1423   journal = {Journal of Pulp and Paper Science},
    1424   volume = {25},
    1425   author = {Scharcanski, J. and Dodson, C.T.J.}
    1426 }
    1427 @article{Pedersen2000,
    1428   year = {2000},
    1429   title = {The {Hausdorff} Dimension and Scale-Space Normalization of Natural Images},
    1430   pages = {266--277},
    1431   journal = {Journal of Visual Communication and Image Representation},
    1432   volume = {11},
    1433   author = {Pedersen, K.S. and Nielsen, M.}
    1434 }
    1435 @phdthesis{Fens2000,
    1436   year = {2000},
    1437   title = {Petrophysical Properties from Small Rock Samples using Image Analysis Techniques},
    1438   school = {Delft University of Technology, Delft, The Netherlands},
    1439   author = {Fens, T.W.}
    1440 }
    1441 @article{Keefe1992,
    1442   year = {1992},
    1443   title = {'Resolution' in high-resolution electron microscopy},
    1444   pages = {282-297},
    1445   journal = {Ultramicroscopy},
    1446   volume = {47},
    1447   author = {O'Keefe, M.A.}
    1448 }
    1449 @book{Hadwiger1957,
    1450   year = {1957},
    1451   title = {{V}orlesungen {\"uber} {I}nhalt, {Oberfl\"ache} und {I}soperimetrie},
    1452   address = {Berlin},
    1453   publisher = {Springer-Verlag},
    1454   author = {Hadwiger, H.}
    1455 }
    1456 @book{Aguilera1999,
    1457   edition = {second},
    1458   year = {1999},
    1459   title = {Microstructural Principles of Food Processing and Engineering},
    1460   publisher = {Aspen Publishers, Inc.},
    1461   author = {Aguilera, J.M. and Stanley, D.W.}
    1462 }
    1463 @article{Gramkov2001,
    1464   year = {2001},
    1465   title = {On Averaging Rotations},
    1466   pages = {7--16},
    1467   journal = {Journal of Mathematical Imaging and Vision},
    1468   volume = {15},
    1469   author = {Gramkov, C.}
    1470 }
    1471 @book{Bracewell2000,
    1472   edition = {third},
    1473   year = {2000,1965},
    1474   title = {The {F}ourier Transform and its Applications},
    1475   annote = {key_fft},
    1476   publisher = {McGraw-Hill},
    1477   author = {Bracewell, R.N.}
    1478 }
    1479 @article{Kimme1975,
    1480   number = {2},
    1481   month = {February},
    1482   year = {1975},
    1483   title = {Finding Circles by an Array of Accumulators},
    1484   pages = {120--122},
    1485   journal = {Communications of the ACM},
    1486   volume = {18},
    1487   author = {Kimme, C. and Ballard, D. and Sklansky, J.}
    1488 }
    1489 @article{Klar2001,
    1490   number = {4},
    1491   year = {2001},
    1492   title = {Stimulated emission depletion microscopy with an offset depleting beam},
    1493   pages = {393-395},
    1494   journal = {Applied Physics Letters},
    1495   volume = {78},
    1496   author = {Klar, T. A. and Dyba, M. and Hell, S.W.}
    1497 }
    1498 @book{Madisetti1997,
    1499   year = {1997},
    1500   title = {The Digital Signal Processing Handbook},
    1501   editor = {Madisetti, V.K. and Williams, D.B.},
    1502   publisher = {IEEE Press/CRC Press}
    1503 }
    1504 @article{Granlund1978,
    1505   year = {1978},
    1506   title = {In Search of a General Picture Processing Operator},
    1507   pages = {155--173},
    1508   journal = {Computer Graphics and Image Processing},
    1509   volume = {8},
    1510   author = {Granlund, G.H.}
    1511 }
    1512 @book{Serra1982,
    1513   year = {1982},
    1514   title = {Image Analysis and Mathematical Morphology},
    1515   address = {London},
    1516   publisher = {Academic Press},
    1517   author = {Serra, J.}
    1518 }
    1519 @book{Runge1924,
    1520   year = {1924},
    1521   title = {Vorlesungen {\"uber} Numerisches Rechnen},
    1522   publisher = {Springer Verlag},
    1523   author = {Runge, C. and Konitz, H.}
    1524 }
    1525 @article{Jeulin1992,
    1526   number = {suppl. I},
    1527   year = {1992},
    1528   title = {Directional Mathematical Morphology for Oriented Image Restoration and Segmentation},
    1529   pages = {545--550},
    1530   journal = {Acta Stereology},
    1531   volume = {11},
    1532   author = {Jeulin, D. and Kurdy, M.B.}
    1533 }
    1534 @article{Jeulin1993,
    1535   month = {October},
    1536   year = {1993},
    1537   title = {Random Models for Morphological Analysis of Powders},
    1538   pages = {13--21},
    1539   journal = {Journal of Microscopy},
    1540   volume = {172, Pt 1},
    1541   author = {Jeulin, D.}
    1542 }
    1543 @article{Westerweel1997,
    1544   year = {1997},
    1545   title = {Fundamentals of digital particle image velocimetry},
    1546   pages = {1379-1392},
    1547   journal = {Measurement Science and Technology},
    1548   volume = {8},
    1549   author = {Westerweel, J.}
    1550 }
    1551 @article{Vossepoel1979,
    1552   year = {1979},
    1553   title = {Dioda: Delineation and feature extraction of microscopical objects},
    1554   pages = {231-244},
    1555   journal = {Computer Programs in Biomedicine},
    1556   volume = {10},
    1557   author = {Vossepoel, A.M. and Smeulders, A.W.M and Broek, K. van den}
    1558 }
    1559 @inproceedings{Meyer1999a,
    1560   series = {Lecture Notes on Computer Science},
    1561   month = {September},
    1562   year = {1999},
    1563   title = {Morphological Scale-Space Representation with Levelings},
    1564   booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)},
    1565   pages = {187--198},
    1566   editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
    1567   volume = {1682},
    1568   address = {Berlin Heidelberg},
    1569   publisher = {Springer-Verlag},
    1570   author = {Meyer, Fernand and Maragos, Petros}
    1571 }
    1572 @article{Gerlich2001,
    1573   year = {2001},
    1574   title = {Four-dimensional imaging and quantitative reconstruction to analyse complex spatiotemporal processes in living cells},
    1575   pages = {852-855},
    1576   journal = {Nature Cell Biology},
    1577   volume = {9},
    1578   author = {Gerlich, D. and Beaudouin, J. and Gebhard, M. and Ellenberg, J. and Eils, R.}
    1579 }
    1580 @article{Sklansky1978,
    1581   number = {10},
    1582   month = {October},
    1583   year = {1978},
    1584   title = {On the {H}ough Technique for Curve Detection},
    1585   pages = {923--926},
    1586   journal = {IEEE Transactions on Computers},
    1587   volume = {27},
    1588   annote = {key_radon},
    1589   author = {Sklansky, J.}
    1590 }
    1591 @article{Vliet1994a,
    1592   number = {5},
    1593   year = {1994},
    1594   title = {Edge localization by MoG filters: Multiple-of-Gaussians},
    1595   pages = {485--496},
    1596   journal = {Pattern Recognition Letters},
    1597   volume = {15},
    1598   author = {Vliet, L.J. van and Verbeek, P.W.}
    1599 }
    1600 @book{doCarmo,
    1601   year = {1976},
    1602   title = {Differential Geometry of Curves and Surfaces},
    1603   address = {New Jersey},
    1604   publisher = {Prentice Hall},
    1605   author = {do Carmo, M.P.}
    1606 }
    1607 @book{Dullien1979,
    1608   edition = {second},
    1609   year = {1979, 1992},
    1610   title = {Porous Media - Fluid Transport and Pore Structure},
    1611   publisher = {Academic Press},
    1612   author = {Dullien, F.A.L.}
    1613 }
    1614 @article{Gerlich2003,
    1615   year = {2003},
    1616   title = {Quantitative motion analysis and visualization of cellular structures},
    1617   pages = {3-13},
    1618   journal = {Methods},
    1619   volume = {29},
    1620   author = {Gerlich, D. and Mattes, J. and Eils, R.}
    1621 }
    1622 @phdthesis{Eckley2001,
    1623   month = {September},
    1624   year = {2001},
    1625   title = {Wavelet Methods for Time Series and Spatial Data},
    1626   address = {Bristol, United Kingdom},
    1627   school = {University of Bristol},
    1628   author = {Eckley, I.A.}
    1629 }
    1630 @article{Verveer1999,
    1631   number = {1},
    1632   year = {1999},
    1633   title = {A comparison of image restoration approaches applied to three-dimensional confocal and wide-field fluorescence microscopy},
    1634   pages = {50-61},
    1635   journal = {Journal of Microscopy},
    1636   volume = {193},
    1637   author = {Verveer, P.J. and Gemkow, M.J. and Jovin, T.M.}
    1638 }
    1639 @article{Verveer1998,
    1640   number = {3},
    1641   year = {1998},
    1642   title = {Theory of confocal fluorescence imaging in the programmable array microscope (PAM)},
    1643   pages = {192-198},
    1644   journal = {Journal of Microscopy},
    1645   volume = {198},
    1646   author = {Verveer, P.J. and Hanley, Q.S. and Verbeek, P.W. and Vliet, L.J. van and Jovin, T.M.}
    1647 }
    1648 @misc{FastICA,
    1649   year = {2004},
    1650   title = {{FastICA}: An implementation of the fast fixed-point algorithm for independent component analysis in {MATLAB}, version 2.3},
    1651   note = {Helsinki University of Technology, {\tt http://www.cis.hut.fi/projects/ica/fastica/}},
    1652   author = {Hurri, J. and {G\"avert}, H. and {S\"arel\"a}, J. and {Hyv\"arinen}, A.}
    1653 }
    1654 @article{Lambacher1996,
    1655   number = {3},
    1656   year = {1996},
    1657   title = {Fluorescence interference-contrast microscopy on oxidized silicon using a monomolecular dye layer},
    1658   pages = {207--216},
    1659   journal = {Applied Physics A},
    1660   volume = {63},
    1661   author = {Lambacher, A. and Fromherz, P.}
    1662 }
    1663 @phdthesis{Eijlers1993,
    1664   year = {1993},
    1665   title = {Scaling and Texture, Pyramids and Fractals},
    1666   address = {Delft},
    1667   school = {Information Theory Group, Department of Electrical Engineering, Delft University of Technology},
    1668   author = {Eijlers, E.J.}
    1669 }
    1670 @article{Verveer1997,
    1671   year = {1997},
    1672   title = {Acceleration of the {ICTM} image restoration algorithm},
    1673   pages = {191--195},
    1674   journal = {Journal of Microscopy},
    1675   volume = {188},
    1676   author = {Verveer, P.J. and Jovin, T.M.}
    1677 }
    1678 @article{Weickert1999,
    1679   year = {1999},
    1680   title = {Coherence-enhancing diffusion of color images},
    1681   pages = {201--212},
    1682   journal = {Image and Vision Computing},
    1683   volume = {17},
    1684   author = {Weickert, J.}
    1685 }
    1686 @article{Young2003,
    1687   number = {3},
    1688   year = {2003},
    1689   title = {Monitoring enzymatic reactions in nanolitre wells},
    1690   pages = {254-263},
    1691   journal = {Journal of Microscopy},
    1692   volume = {212},
    1693   author = {Young, I.T. and Moerman, R. and Doel, L.R. van den and Iordanov, V. and Kroon, A. and Dietrich, H.R.C. and Dedem, G.W.K. van and Bossche, A. and Gray, B.L. and Sarro, L. and Verbeek, P.W. and Vliet, L.J. van}
    1694 }
    1695 @article{Michielsen2001,
    1696   year = {2001},
    1697   title = {Integral-Geometry Morphological Image Analysis},
    1698   pages = {461--538},
    1699   journal = {Physics Report},
    1700   volume = {347},
    1701   author = {Michielsen, K. and Raedt, H. de}
    1702 }
    1703 @article{Young2002,
    1704   number = {11},
    1705   year = {2002},
    1706   title = {Recursive Gabor filtering},
    1707   pages = {2798--2805},
    1708   journal = {IEEE Transactions on Signal Processing},
    1709   volume = {50},
    1710   author = {Young, I.T. and van Vliet, L.J. and van Ginkel, M. }
    1711 }
    1712 @inproceedings{Young2000,
    1713   month = {September 3-7},
    1714   year = {2000},
    1715   title = {Recursive Gabor Filtering},
    1716   booktitle = {ICPR15, Proc. 15th Int. Conference on Pattern Recognition (Barcelona, Spain)},
    1717   pages = {342--345},
    1718   editor = {Sanfeliu, A. and Villanueva, J.J. and Vanrell, M. and Alquezar, R. and Huang, T. and Serra, J.},
    1719   volume = {3},
    1720   publisher = {IEEE Computer Society Press, Los Alamitos},
    1721   author = {Young, I.T. and Vliet, L.J. van and Ginkel, M. van}
    1722 }
    1723 @article{Kues2002,
    1724   number = {4},
    1725   year = {2002},
    1726   title = {Single Molecule Motion Perpendicular to the Focal Plane of a Microscope: Application to Splicing Factor Dynamics within the Cell Nucleus},
    1727   pages = {218-224},
    1728   journal = {Single Molecule},
    1729   volume = {3},
    1730   author = {Kues, T. and Kubitscheck, U.}
    1731 }
    1732 @article{Buelow2001,
    1733   number = {11},
    1734   year = {2001},
    1735   title = {Hypercomplex Signals - A Novel Extension of the Analytic Signal to the Multidimensional Case},
    1736   pages = {2844--2852},
    1737   journal = {IEEE Transactions on Signal Processing},
    1738   volume = {49},
    1739   author = {{B\"ulow}, T. and Sommer, G.}
    1740 }
    1741 @article{Grunewald2003,
    1742   year = {2003},
    1743   title = {Prospects of electron cryotomography to visualize macromolecular complexes inside cellular compartments: implications of crowding},
    1744   pages = {577-591},
    1745   journal = {Biophysical Chemistry},
    1746   volume = {100},
    1747   author = {{Gr\"unewald}, K. and Medalia, O. and Gross, A. and Steven, A.C. and Baumeister, W.}
    1748 }
    1749 @inproceedings{Haglund1993,
    1750   month = {May},
    1751   year = {1993},
    1752   title = {Scale and Orientation Adaptive Filtering},
    1753   booktitle = {Proceedings of the 8th Scandinavian Conference on Image Analysis},
    1754   pages = {847--855},
    1755   address = {{Troms\o}, Norway},
    1756   author = {Haglund, L. and Knutsson, H. and Granlund, G.H.}
    1757 }
    1758 @phdthesis{Haglund1992,
    1759   year = {1992},
    1760   title = {Adaptive Multidimensional Filtering},
    1761   address = {{Link\"oping, Sweden}},
    1762   school = {{Link\"oping University}},
    1763   author = {Haglund, L.}
    1764 }
    1765 @article{SaintMarc1991,
    1766   number = {6},
    1767   year = {1991},
    1768   title = {Adaptive Smoothing: A General Tool for Early Vision},
    1769   pages = {514},
    1770   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    1771   volume = {13},
    1772   author = {Saint-Marc, P. and Chen, J.S. and Medioni, G.}
    1773 }
    1774 @article{Verwer1993,
    1775   number = {5},
    1776   year = {1993},
    1777   title = {Binary and Grey-Value Skeletons: Metrics and Algorithms},
    1778   pages = {1287--1308},
    1779   journal = {Int. Journal of Pattern Recognition and Artificial Intelligence},
    1780   volume = {7},
    1781   author = {Verwer, B.J.H. and van Vliet, L.J. and Verbeek, P.W.}
    1782 }
    1783 @article{Verwer1991,
    1784   month = {November},
    1785   year = {1991},
    1786   title = {Local distances for distance transformations in two and three dimensions},
    1787   pages = {671--682},
    1788   journal = {Pattern Recognition Letters},
    1789   volume = {12},
    1790   author = {Verwer, B.J.H.}
    1791 }
    1792 @inproceedings{Johansen1986,
    1793   year = {1986},
    1794   title = {Representing Signals by their Toppoints in Scale Space},
    1795   booktitle = {Proceeding of the 8th International Conference on Pattern Recognition},
    1796   pages = {215--217},
    1797   volume = {1},
    1798   author = {Johansen, P. and Skelboe, S. and Grue, K. and Andersen, J.D.}
    1799 }
    1800 @book{Jahne1997,
    1801   edition = {4th},
    1802   year = {1997},
    1803   title = {Digital Image Processing},
    1804   address = {Berlin},
    1805   publisher = {Springer},
    1806   author = {{J\"ahne}, B.}
    1807 }
    1808 @inproceedings{Vulovic2010a,
    1809   month = {April 14-17},
    1810   year = {2010},
    1811   title = {Estimation Of Defocus And Astigmatism In Transmission Electron Microscopy},
    1812   booktitle = {IEEE International Symposium on Biomedical Imaging},
    1813   pages = {1121-1124},
    1814   address = {Rotterdam, The Netherlands},
    1815   author = {Vulovic, M. and Brandt, P.L. and Ravelli, R.B.G. and Koster, A.J. and Vliet, L.J. van and Rieger, B.}
    1816 }
    1817 @article{Verwer1994,
    1818   number = {5},
    1819   year = {1994},
    1820   title = {Binary and grey-value skeletons: Metrics and algorithms},
    1821   pages = {1287--1308},
    1822   journal = {Int. Journal of Pattern Recognition and Artificial Intelligence},
    1823   volume = {7},
    1824   author = {Verwer, B.J.H. and Vliet, L.J. van and Verbeek, P.W.}
    1825 }
    1826 @article{Shao1998,
    1827   number = {11},
    1828   year = {1998},
    1829   title = {On the fifth order aberration in a sextupole corrected probe forming system},
    1830   pages = {2428-2437},
    1831   journal = {Review of Scientific Instruments},
    1832   volume = {59},
    1833   author = {Shao, Z.}
    1834 }
    1835 @article{Nitzberg1992,
    1836   number = {8},
    1837   month = {August},
    1838   year = {1992},
    1839   title = {Nonlinear Image Filtering with Edge and Corner Enhancement},
    1840   pages = {826--833},
    1841   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    1842   volume = {14},
    1843   author = {Nitzberg, M. and Shiota, T.}
    1844 }
    1845 @article{Bernardini1994,
    1846   number = {8},
    1847   month = {August},
    1848   year = {1994},
    1849   title = {A New Technique for Twiddle-Factor Elimination in Multidimensional {FFT}'s},
    1850   pages = {2176--2178},
    1851   journal = {IEEE Transactions on Signal Processing},
    1852   volume = {42},
    1853   annote = {key_fft},
    1854   author = {Bernardini, R. and Cortelazzo, G.M. and Mian, G.A.}
    1855 }
    1856 @article{Nellist1994,
    1857   year = {1994},
    1858   title = {Beyond the conventional information limit: the relevant coherence function},
    1859   pages = {61-74},
    1860   journal = {Ultramicroscopy},
    1861   volume = {54},
    1862   author = {Nellist, P.D. and Rodenburg, J.M.}
    1863 }
    1864 @article{Maragos1989,
    1865   number = {7},
    1866   year = {1989},
    1867   title = {Pattern Spectrum and Multiscale Shape Representation},
    1868   pages = {701--716},
    1869   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    1870   volume = {11},
    1871   author = {Maragos, P.}
    1872 }
    1873 @article{DeMoment1989,
    1874   number = {12},
    1875   month = {December},
    1876   year = {1989},
    1877   title = {Image Reconstruction and Restoration: Overview of Common Estimation Structures and Problems},
    1878   pages = {2024--2036},
    1879   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    1880   volume = {37},
    1881   author = {DeMoment, G.}
    1882 }
    1883 @article{Maragos1986,
    1884   number = {5},
    1885   year = {1986},
    1886   title = {Morphological Skeleton Representation and Coding of Binary Images},
    1887   pages = {1228-1244},
    1888   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    1889   volume = {34},
    1890   author = {Maragos, P. and Schafer, R. W.}
    1891 }
    1892 @article{GRADALT,
    1893   year = {1986},
    1894   title = {A Note on the Gradient of a Multi-Image},
    1895   pages = {166--125},
    1896   journal = {Computer Vision, Graphics, and Image Processing},
    1897   volume = {33},
    1898   author = {S. di Zeno}
    1899 }
    1900 @phdthesis{Ecker2004,
    1901   month = {September},
    1902   year = {2004},
    1903   title = {Conformations of single polymer chains on surfaces},
    1904   address = {Berlin},
    1905   school = {Humboldt-Universit{\"a}t zu Berlin},
    1906   author = {Ecker, C.}
    1907 }
    1908 @article{Haider2000,
    1909   year = {2000},
    1910   title = {Upper limits for the residual aberrations of a high-resolution aberration-corrected {STEM}},
    1911   pages = {163-175},
    1912   journal = {Ultramicroscopy},
    1913   volume = {81},
    1914   author = {Haider, M. and Uhlemann, S. and Zach, J.}
    1915 }
    1916 @article{Breen2000,
    1917   year = {2000},
    1918   title = {Mathematical Morphology: A Useful Set of Tools for Image Analysis},
    1919   pages = {105--120},
    1920   journal = {Statistics and Computing},
    1921   volume = {10},
    1922   author = {Breen, E.J. and Jones, R. and Talbot, H.}
    1923 }
    1924 @article{Mucke2004,
    1925   number = {5},
    1926   year = {2004},
    1927   title = {Assessing the Flexibility of Intermediate Filaments by Atomic Force Microscopy},
    1928   pages = {1241-1250},
    1929   journal = {Journal of Molecular Biology},
    1930   volume = {335},
    1931   author = {{M\"ucke}, N. and Kreplak, L. and Krimse, R. and Wedig, T. and Herrmann, H. and Aebi, U. and Langowski, J.}
    1932 }
    1933 @article{Kusumi1993,
    1934   year = {1993},
    1935   title = {Confined Lateral Diffusion of Membrane Receptors as Studied by Single Particle Tracking (Nanovid Microscopy)},
    1936   pages = {2021-2040},
    1937   journal = {Biophysical Journal},
    1938   volume = {65},
    1939   author = {Kusumi, A. and Sako, Y. and Yamamoto, M.}
    1940 }
    1941 @article{Tarabusi1999,
    1942   month = {February},
    1943   year = {1999},
    1944   title = {Characterization of the Range of the Radon Transform on Homogeneous Trees},
    1945   pages = {11--17},
    1946   journal = {Electronic Research Announcements of the American Mathematical Society},
    1947   volume = {5},
    1948   annote = {key_radon},
    1949   author = {Tarabusi, E.C. and Cohen, J.M. and Colonna, F.}
    1950 }
    1951 @article{Dugelay1995,
    1952   year = {1995},
    1953   title = {Differential methods for the identification of 2D and 3D motion models in image sequences },
    1954   pages = {105--127},
    1955   journal = {Signal Processing: Image Communication},
    1956   volume = {7},
    1957   author = {Dugelay, J.L. and Sanson, H.}
    1958 }
    1959 @article{Gryczynski1995,
    1960   number = {1},
    1961   year = {1995},
    1962   title = {Three-photon induced fluorescence of 2,5-diphenyloxazole with a femtosecond {Ti:sapphire} laser},
    1963   pages = {30-35},
    1964   journal = {Chemical Physics Letters},
    1965   volume = {245},
    1966   author = {Gryczynski, I. and Malak, H. and Lakowicz, J.R.}
    1967 }
    1968 @article{Fernandez2006a,
    1969   number = {3},
    1970   year = {2006},
    1971   title = {Strategies for structural determination of biological specimens},
    1972   pages = {84-94},
    1973   journal = {IEEE Signal Processing Magazine},
    1974   volume = {23},
    1975   author = {Fernandez, J.-J. and Sorzano, C.O.S. and Marabini, R. and Carazo, J.-M.}
    1976 }
    1977 @article{Immerkaer1996,
    1978   number = {2},
    1979   year = {1996},
    1980   title = {Fast Noise Variance Estimation},
    1981   pages = {300-302},
    1982   journal = {Computer Vision and Image Understanding},
    1983   volume = {64},
    1984   author = {{Immerk\aer}, J.}
    1985 }
    1986 @article{Bazin1965,
    1987   month = {August},
    1988   year = {1965},
    1989   title = {Off-line Global Approach to Pattern Recognition for Bubble Chamber Pictures},
    1990   pages = {291--295},
    1991   journal = {IEEE Transactions on Nuclear Science},
    1992   volume = {12},
    1993   author = {Bazin, M.J. and Benoit, J.W.}
    1994 }
    1995 @article{Lenz1987a,
    1996   year = {1987},
    1997   title = {Rotation-Invariant Operators and Scale-Space Filtering},
    1998   pages = {151--154},
    1999   journal = {Pattern Recognition Letters},
    2000   volume = {6},
    2001   author = {Lenz, R.}
    2002 }
    2003 @article{Miller1953,
    2004   year = {1953},
    2005   title = {A Production of Amino Acids Under Possible Primitive Earth Conditions},
    2006   pages = {528--529},
    2007   journal = {Science},
    2008   volume = {117},
    2009   author = {Miller, S.L.}
    2010 }
    2011 @article{Thapa1997,
    2012   number = {1},
    2013   month = {January/February},
    2014   year = {1997},
    2015   title = {Semi-automatic Analysis of Rock Fracture Orientations From Borehole Wall Images},
    2016   pages = {129--137},
    2017   journal = {Geophysics},
    2018   volume = {62},
    2019   author = {Thapa, B.B. and Hughett, P. and Karasaki, K.}
    2020 }
    2021 @phdthesis{Xu1996,
    2022   year = {1996},
    2023   title = {Motion and Optical Flow in Computer Vision},
    2024   address = {{Link\"oping}, Sweden},
    2025   school = {{Link\"oping} University},
    2026   author = {Xu, S.}
    2027 }
    2028 @misc{VedelJensen2000,
    2029   month = {May 20--25},
    2030   year = {2000},
    2031   title = {Stereology and Geometric Tomography},
    2032   howpublished = {Summer School, Sandbjerg Manor, Denmark},
    2033   author = {Vedel Jensen, E.B.}
    2034 }
    2035 @article{Pauwels1995,
    2036   number = {7},
    2037   month = {July},
    2038   year = {1995},
    2039   title = {An Extended Class of Scale-Invariant and Recursive Scale Space Filters},
    2040   pages = {691--701},
    2041   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    2042   volume = {17},
    2043   author = {Pauwels, E.J. and Gool, L.J. van and Fiddelaers, P. and Moons, T.}
    2044 }
    2045 @inproceedings{Goldfarb1986,
    2046   year = {1986},
    2047   title = {Metric Data Models and Associative Memories},
    2048   booktitle = {IASTED/AFCET International Symposium on Robotics and Artificial Intelligence, University Paul Sabatier, Toulouse},
    2049   pages = {53--73},
    2050   volume = {3},
    2051   author = {Goldfarb, L.}
    2052 }
    2053 @article{Goldfarb1984,
    2054   number = {5},
    2055   year = {1984},
    2056   title = {A Unified Approach to Pattern Recognition},
    2057   pages = {575--582},
    2058   journal = {Pattern Recognition},
    2059   volume = {17},
    2060   author = {Goldfarb, L.}
    2061 }
    2062 @article{Silcox1992,
    2063   year = {1992},
    2064   title = {Resolution limits in annular dark field {STEM}},
    2065   pages = {173-186},
    2066   journal = {Ultramicroscopy},
    2067   volume = {47},
    2068   author = {Silcox, J. and Xu, P. and Loane, R.F.}
    2069 }
    2070 @article{Blair1996,
    2071   number = {B9},
    2072   year = {1996},
    2073   title = {Using Two-Point Correlation Functions to Characterize Microgeometry and Estimate Permeabilities of Sandstones and Porous Glass},
    2074   pages = {20359--20375},
    2075   journal = {Journal of Geophysical Research},
    2076   volume = {101},
    2077   author = {Blair, S.C. and Berge, P.A. and Berryman, J.G.}
    2078 }
    2079 @article{Rieger2001a,
    2080   number = {7},
    2081   year = {2002},
    2082   title = {Curvature of n-dimensional Space Curves in Grey-Value Images},
    2083   pages = {738--745},
    2084   journal = {IEEE Transactions on Image Processing},
    2085   volume = {11},
    2086   author = {Rieger, B. and Vliet, L.J. van}
    2087 }
    2088 @article{Deegan1997,
    2089   year = {1997},
    2090   title = {Capillary flow as the cause of ring stains from dried liquid drops},
    2091   pages = {827--829},
    2092   journal = {Nature},
    2093   volume = {389},
    2094   author = {Deegan, R.D. and Bakajin, O. and Dupont, T.F. and Huber, G. and Nagel, S.R. and Witten, T.A.}
    2095 }
    2096 @article{Biemond1990,
    2097   number = {5},
    2098   month = {May},
    2099   year = {1990},
    2100   title = {Iterative Methods for Image Deblurring},
    2101   pages = {856--883},
    2102   journal = {Proceedings of the IEEE},
    2103   volume = {78},
    2104   author = {Biemond, J. and Lagendijk, R.L. and Mersereau, R.M.}
    2105 }
    2106 @article{Jones2005,
    2107   number = {4},
    2108   year = {2005},
    2109   title = {Measuring Forces between Protein Fibers by Microscopy},
    2110   pages = {2433-2441},
    2111   journal = {Biophysical Journal},
    2112   volume = {88},
    2113   author = {Jones, C.W. and Wang, J.C. and Briehl, R.W. and Turner, M.S.}
    2114 }
    2115 @article{Jares-Erijman2003,
    2116   number = {7},
    2117   year = {2003},
    2118   title = {{FRET} imaging},
    2119   pages = {1138-1395},
    2120   journal = {Nature Biotechnology},
    2121   volume = {21},
    2122   author = {Jares-Erijman, E.A. and Jovin, T.M.}
    2123 }
    2124 @article{Jares-Erijman2006,
    2125   year = {2006},
    2126   title = {Imaging molecular interactions in living cells by {FRET} microscopy},
    2127   journal = {Current Opinion in Chemical Biology},
    2128   author = {Jares-Erijman, E.A. and Jovin, T.M.}
    2129 }
    2130 @inproceedings{Sorensen1988,
    2131   month = {April},
    2132   year = {1988},
    2133   title = {Efficient Computation of the Short-Time {FFT}},
    2134   booktitle = {Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, (New York, U.S.A.)},
    2135   pages = {1894--1897},
    2136   annote = {key_fft},
    2137   author = {Sorensen, H.V. and Burrus, C.S.}
    2138 }
    2139 @article{Bonnet2000,
    2140   year = {2000},
    2141   title = {Artificial Intelligence and Pattern Recognition Techniques in Microscope Image Processing and Analysis},
    2142   journal = {Advances in Imaging and Electron Physics},
    2143   volume = {114},
    2144   author = {Bonnet, {No\"el}}
    2145 }
    2146 @article{Sukanya2000,
    2147   number = {3},
    2148   month = {July},
    2149   year = {2000},
    2150   title = {Multiscale Image Analysis through the Surface-shape Operator},
    2151   pages = {305--316},
    2152   journal = {Journal of Electronic Imaging},
    2153   volume = {9},
    2154   author = {Sukanya, P. and Takamatsu, R. and Sato, M.}
    2155 }
    2156 @article{Sorensen1987,
    2157   number = {6},
    2158   month = {June},
    2159   year = {1987},
    2160   title = {Real-Valued Fast {Fourier} Transform Algorithms},
    2161   pages = {849--863},
    2162   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    2163   volume = {35},
    2164   annote = {key_fft},
    2165   author = {Sorensen, H.V. and Jones, D.L. and Heideman, M.T. and Burrus, C.S.}
    2166 }
    2167 @article{Moon1996,
    2168   number = {6},
    2169   month = {November},
    2170   year = {1996},
    2171   title = {The Expectation-Maximization Algorithm},
    2172   pages = {47--60},
    2173   journal = {IEEE Signal Processing Magazine},
    2174   volume = {13},
    2175   author = {Moon, T.K.}
    2176 }
    2177 @article{Noble1988,
    2178   number = {2},
    2179   month = {May},
    2180   year = {1988},
    2181   title = {Finding Corners},
    2182   pages = {121--128},
    2183   journal = {Image and Vision Computing},
    2184   volume = {6},
    2185   author = {Noble, A.}
    2186 }
    2187 @book{Barham2001,
    2188   year = {2001},
    2189   title = {The Science of Cooking},
    2190   address = {Berlin, Heidelberg, New York},
    2191   publisher = {Springer},
    2192   author = {Barham, P.}
    2193 }
    2194 @article{Bleau1992,
    2195   number = {2},
    2196   month = {September},
    2197   year = {1992},
    2198   title = {A New Set of Fast Algorithms for Mathematical Morphology, I. Idempotent Geodesic Transforms},
    2199   pages = {178--209},
    2200   journal = {CVGIP: Image Understanding},
    2201   volume = {56},
    2202   author = {Bleau, A. and Guise, J. de and LeBlanc, A.-R.}
    2203 }
    2204 @article{Iverson1995,
    2205   number = {10},
    2206   month = {October},
    2207   year = {1995},
    2208   title = {Logical/Linear Operators for Image Curves},
    2209   pages = {982--996},
    2210   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    2211   volume = {17},
    2212   author = {Iverson, L.A. and Zucker, S.W.}
    2213 }
    2214 @inproceedings{Tretiak1984,
    2215   year = {1984},
    2216   title = {Velocity estimation for mimage sequences with second order differential operators},
    2217   booktitle = {Int. Conf. on Pattern Recognition (Montreal, Canada)},
    2218   pages = {20--22},
    2219   publisher = {IEEE Computer Society Press, Los Alamitos, USA},
    2220   author = {Tretiak, O. and Pastor, L.}
    2221 }
    2222 @book{Dudgeon1984,
    2223   year = {1984},
    2224   title = {Multidimensional Digital Signal Processing},
    2225   publisher = {Prentice-Hall},
    2226   author = {Dudgeon, D.E. and Merserau, R.M.}
    2227 }
    2228 @phdthesis{Iverson1994,
    2229   year = {1994},
    2230   title = {Toward Discrete Geometric Models for Early Vision},
    2231   address = {{Montr\'eal}, Canada},
    2232   school = {McGill University},
    2233   author = {Iverson, L.A.}
    2234 }
    2235 @article{Potter2004,
    2236   year = {2004},
    2237   title = {Robotic grid loading system for a transmission electron microscope},
    2238   pages = {431-440},
    2239   journal = {Journal of Structural Biology},
    2240   volume = {146},
    2241   author = {Potter, C.S. and Pulokas, J. and Smith, P. and Suloway, C. and Carragher, B.}
    2242 }
    2243 @book{Kohonen1995,
    2244   series = {Springer Series in Information Sciences},
    2245   year = {1995},
    2246   title = {Self-Organizing Maps},
    2247   volume = {30},
    2248   publisher = {Springer-Verlag},
    2249   author = {Kohonen, T.}
    2250 }
    2251 @article{Qian1999,
    2252   year = {1999},
    2253   title = {Quantitative Study of Polymer Conformation and Dynamics by Single-Particle Tracking},
    2254   pages = {1598-1805},
    2255   journal = {Biophysical Journal},
    2256   volume = {78},
    2257   author = {Qian, H. and Elson, E.L.}
    2258 }
    2259 @article{Bennett1999,
    2260   number = {7},
    2261   month = {July},
    2262   year = {1999},
    2263   title = {A Method to Detect and Characterize Ellipses using the Hough Transform},
    2264   pages = {652--657},
    2265   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    2266   volume = {21},
    2267   annote = {key_radon},
    2268   author = {Bennett, N. and Burridge, R. and Saito, N.}
    2269 }
    2270 @inproceedings{Faas2003,
    2271   month = {June 29 -July 2},
    2272   year = {2003},
    2273   title = {3D-Orientation space; filters and sampling},
    2274   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden)},
    2275   author = {Faas, F.G.A. and Vliet, L.J. van}
    2276 }
    2277 @article{Qian1991,
    2278   year = {1991},
    2279   title = {Single Particle Tracking; Analysis of diffusion flow in two-dimensional systems},
    2280   pages = {910-921},
    2281   journal = {Biophysical Journal},
    2282   volume = {60},
    2283   author = {Qian, H. and Sheetz, M.P. and Elson, E.L.}
    2284 }
    2285 @article{Mallat1992a,
    2286   number = {2},
    2287   month = {March},
    2288   year = {1992},
    2289   title = {Singularity Detection and Processing with Wavelets},
    2290   pages = {617--643},
    2291   journal = {IEEE Transactions on Information Theory},
    2292   volume = {38},
    2293   author = {Mallat, S.G. and Hwang, W.L.}
    2294 }
    2295 @article{Qian1994,
    2296   number = {10},
    2297   month = {October},
    2298   year = {1994},
    2299   title = {Self-Sorting In-Place {FFT} Algorithm with Minimum Working Space},
    2300   pages = {2835--2836},
    2301   journal = {IEEE Transactions on Signal Processing},
    2302   volume = {42},
    2303   annote = {key_fft},
    2304   author = {Qian, Z. and Lu, C. and An, M. and Tolimieri, R.}
    2305 }
    2306 @inproceedings{Williams1998,
    2307   series = {Proceedings of SPIE},
    2308   year = {1998},
    2309   title = {Back-Illuminated {CCD} Imagers for High Information Content Digital Photography},
    2310   author = {Williams, G.M. Jr and Marsh, H.H. and Hinds, M.}
    2311 }
    2312 @article{Ragnemalm1992,
    2313   number = {3},
    2314   month = {November},
    2315   year = {1992},
    2316   title = {Neighborhoods for Distance Transformation Using Ordered Propagation},
    2317   pages = {399--409},
    2318   journal = {CVGIP: Image Understanding},
    2319   volume = {56},
    2320   author = {Ragnemalm, I.R.}
    2321 }
    2322 @techreport{Andersson1999,
    2323   year = {1999},
    2324   title = {Filter Networks},
    2325   institution = {{Link\"oping} University},
    2326   author = {Andersson, M. and Wiklund, J. and Knutsson, H.}
    2327 }
    2328 @techreport{Andersson1998,
    2329   year = {1998},
    2330   title = {Sequential Filter Trees for Efficient 2{D}, 3{D} and 4{D} Orientation Estimation},
    2331   institution = {{Link\"oping} University},
    2332   author = {Andersson, M. and Wiklund, J. and Knutsson, H.}
    2333 }
    2334 @article{Duits2004,
    2335   number = {3},
    2336   year = {2004},
    2337   title = {On the Axioms of Scale Space Theory},
    2338   pages = {267-298},
    2339   journal = {Journal of Mathematical Imaging and Vision},
    2340   volume = {20},
    2341   author = {Duits, R. and Florak, L.M.J. and Graaf, J. de and Haar Romey, B.M. ter}
    2342 }
    2343 @article{Louverdis2002,
    2344   year = {2002},
    2345   title = {A New Approach to Morphological Color Image Processing},
    2346   pages = {1733-1741},
    2347   journal = {Pattern Recognition},
    2348   volume = {35},
    2349   author = {Louverdis, G. and Vardavoulia, M.I. and Andreadis, I. and Tsalides, Ph.}
    2350 }
    2351 @article{Grunewald2003a,
    2352   year = {2003},
    2353   title = {Three-Dimensional Structure of Herpes Simplex Virus from Cryo-Electron Tomography},
    2354   pages = {1396-1398},
    2355   journal = {Science},
    2356   volume = {302},
    2357   author = {{Gr\"unewald}, K. and Desai, P. and Winkler, D.C. and Heymann, J.B. and Belnap, D. and Baumeister, W. and Steven, A.C.}
    2358 }
    2359 @article{Jamitzky2001,
    2360   number = {1-2},
    2361   year = {2001},
    2362   title = {Scaling-index method as an image processing tool in scanning-probe microscopy},
    2363   pages = {241-246},
    2364   journal = {Ultramicroscopy},
    2365   volume = {86},
    2366   author = {Jamitzky, F. and Stark, R.W. and Bunk, W. and Thalhammer, S. and {R\"ath}, C. and Aschenbrenner, T. and Morfill, G.E. and Heckl, W.M.}
    2367 }
    2368 @phdthesis{Andersson1992,
    2369   year = {1992},
    2370   title = {Controllable Multidimensional Filters and Models in Low Level Computer Vision},
    2371   address = {{Link\"oping, Sweden}},
    2372   school = {{Link\"oping University}},
    2373   author = {Andersson, M.T.}
    2374 }
    2375 @inproceedings{Ye1997,
    2376   month = {June 15-19},
    2377   year = {1997},
    2378   title = {Automatic High Resolution Sedimentary Dip Detection on Borehole Imagery},
    2379   booktitle = {SPWLA 38th Annual Logging Symposium},
    2380   author = {Ye, S. and Rabiller, P. and Keskes, N.}
    2381 }
    2382 @article{Shannon1949,
    2383   number = {1},
    2384   year = {1949},
    2385   title = {Communication in the Presence of Noise},
    2386   pages = {10--21},
    2387   note = {[reprinted in: Proceedings of the IEEE, vol. 86, no. 2, pp. 447-457, February 1998]},
    2388   journal = {Proceedings of the IRE},
    2389   volume = {37},
    2390   author = {Shannon, C.E.}
    2391 }
    2392 @article{Peters2003,
    2393   year = {2001},
    2394   title = {Trafficking of prion proteins through a novel caveolae-mediated endosomal pathway},
    2395   pages = {703-717},
    2396   journal = {Journal of Cell Biology},
    2397   volume = {162},
    2398   author = {Peters, P.J. and Vey, M. and Donselaar, E. van and Mironov, A. Jr. and Erpel, S. and Peretx, D. and Lexlerc, E. and DeArmond, S.J. and Burton, D.R. and Williamson, R.A. and Prusiner, S.B.}
    2399 }
    2400 @article{Shannon1948,
    2401   month = {July, October},
    2402   year = {1948},
    2403   title = {A Mathematical Theory of Communication},
    2404   pages = {379--423, 623--656},
    2405   journal = {The Bell System Technical Journal},
    2406   volume = {27},
    2407   author = {Shannon, C.E.}
    2408 }
    2409 @article{Robinson2004,
    2410   number = {15},
    2411   year = {2004},
    2412   title = {Efficient morphological reconstruction: a downhill filter},
    2413   pages = {1759-1767},
    2414   journal = {Pattern Recognition Letters},
    2415   volume = {25},
    2416   author = {Robinson, K. and Whelan, P.F.}
    2417 }
    2418 @article{Cherny1999,
    2419   number = {4},
    2420   year = {1999},
    2421   title = {{DNA} Bending Due to Specific p53 and p53 Core Domain-{DNA} Interactions Visualized by Electron Microscopy},
    2422   pages = {1015-1026},
    2423   journal = {Journal of Molecular Biology},
    2424   volume = {294},
    2425   author = {Cherny, D.I. and Striker, G. and Subramaniam, V. and Jett, S.D. and Pale\v{c}ek, E. and Jovin, T.M.}
    2426 }
    2427 @inproceedings{Rieger2001,
    2428   month = {May 30 -June 1},
    2429   year = {2001},
    2430   title = {Estimation of Curvature of n-dimensional Space Curves in Grey-value Images},
    2431   booktitle = {Proc. ASCI 2001, 7th Annual Conf. of the Advanced School for Computing and Imaging},
    2432   pages = {436--442},
    2433   editor = {Lagendijk, R. and Pimentel, A. and Wilkinson, M.},
    2434   address = {Delft},
    2435   author = {Rieger, B. and Vliet, L.J. van},
    2436   organization = {ASCI}
    2437 }
    2438 @inproceedings{Rieger2003,
    2439   series = {LNCS 2749},
    2440   month = {June 29 -July 2},
    2441   year = {2003},
    2442   title = {Estimation of curvature based shape properties of surfaces in 3D grey-value images},
    2443   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    2444   pages = {262-267},
    2445   editor = {{Big\"un}, J. and Gustavsson, T.},
    2446   address = {Berlin},
    2447   publisher = {Springer-Verlag},
    2448   author = {Rieger, B. and Vliet, L.J. van and Verbeek, P.W.}
    2449 }
    2450 @article{Borgefors1986,
    2451   year = {1986},
    2452   title = {Distance transformations in digital images},
    2453   pages = {344--371},
    2454   journal = {Computer Vision, Graphics and Image Processing },
    2455   volume = {34},
    2456   author = {Borgefors, G.}
    2457 }
    2458 @article{Wiener1949,
    2459   year = {1949},
    2460   title = {Extrapolation, Interpolation and Smoothing of stationary Time Series},
    2461   journal = {Cambridge, MA : M.I.T. Press},
    2462   author = {Wiener, N.}
    2463 }
    2464 @article{Borgefors1984,
    2465   year = {1984},
    2466   title = {Distance transformations in arbitrary dimensions},
    2467   pages = {321-345},
    2468   journal = {Computer Vision, Graphics and Image Processing },
    2469   volume = {27},
    2470   author = {Borgefors, G.}
    2471 }
    2472 @article{Dougherty2001,
    2473   year = {2001},
    2474   title = {Optimal Conjunctive Granulometric Bandpass Filters},
    2475   pages = {39--51},
    2476   journal = {Journal of Mathematical Imaging and Vision},
    2477   volume = {14},
    2478   author = {Dougherty, Edward R.}
    2479 }
    2480 @article{Pei2001,
    2481   number = {11},
    2482   year = {2001},
    2483   title = {Efficient Implementation of Quaternion Fourier Transform, Convolution, and Correlation by 2D Complex FFT},
    2484   pages = {2783--2797},
    2485   journal = {IEEE Transactions on Signal Processing},
    2486   volume = {49},
    2487   annote = {key_fft},
    2488   author = {Pei, S.-C. and Ding, J.-J. and Chang, J.-H.}
    2489 }
    2490 @book{Scheck1999,
    2491   year = {1999},
    2492   title = {Mechanics: From {N}ewton's Law to Deterministic Chaos},
    2493   address = {Berlin},
    2494   publisher = {Springer},
    2495   author = {F. Scheck}
    2496 }
    2497 @article{Gordon2004,
    2498   number = {17},
    2499   year = {2004},
    2500   title = {Single-molecule high-resolution imaging with photobleaching},
    2501   pages = {6462-6465},
    2502   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    2503   volume = {101},
    2504   author = {Gordon, M.P. and Ha, T. and Selvin, P.R.}
    2505 }
    2506 @inproceedings{Koenderink2002,
    2507   series = {Lecture Notes in Computer Science},
    2508   year = {2002},
    2509   title = {Image Processing Done Right},
    2510   booktitle = {Proceedings of the ECCV 2002},
    2511   pages = {158--172},
    2512   editor = {Heyden, A.},
    2513   volume = {2350},
    2514   publisher = {Springer-Verlag},
    2515   author = {Koenderink, J.J. and Doorn, A.J. van}
    2516 }
    2517 @article{Huang1979,
    2518   number = {1},
    2519   month = {February},
    2520   year = {1979},
    2521   title = {A Fast Two-Dimensional Median Filtering Algorithm},
    2522   pages = {13--18},
    2523   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    2524   volume = {27},
    2525   author = {Huang, T.S. and Yang, G.J. and Tang, G.Y.}
    2526 }
    2527 @misc{LevitzXXXX,
    2528   title = {Evaluation of 3D Structural Properties of Porous Materials from 2D Sections: Morphology and Chord Length Distribution Functions},
    2529   howpublished = {www},
    2530   author = {Levitz, P.}
    2531 }
    2532 @inproceedings{Vliet1988a,
    2533   year = {1988},
    2534   title = {An edge detection model based on nonlinear Laplace filtering},
    2535   booktitle = {Pattern Recognition and Artificial Intelligence},
    2536   pages = {63--73},
    2537   editor = {Gelsema, E.S. and Kanal L.N.},
    2538   address = {North-Holland},
    2539   publisher = {Elsevier Science Publishers B.V.},
    2540   author = {Vliet, L.J. van and Young, I.T. and Beckers, A.L.D.}
    2541 }
    2542 @article{Hansen2001,
    2543   year = {2001},
    2544   title = {Nonparametric Estimation of the Chord Length Distribution},
    2545   journal = {Advances in Applied Probability},
    2546   volume = {33},
    2547   author = {Hansen, M.B. and Zwet, E.W. van}
    2548 }
    2549 @article{Baddeley1997,
    2550   year = {1997},
    2551   title = {Kaplan-Meier Estimators for Interpoint Distance Distributions for Spatial Point Processes},
    2552   pages = {263--292},
    2553   journal = {Annals of Statistics 25},
    2554   volume = {25},
    2555   author = {Baddeley, A.J. and Gill, R.D.}
    2556 }
    2557 @inproceedings{Vliet1995a,
    2558   month = {June},
    2559   year = {1995},
    2560   title = {Estimators for Orientation and Anisotropy in Digitized Images},
    2561   booktitle = {ASCI'95, Proceedings of the First Annual Conference of the Advanced School for Computing and Imaging},
    2562   pages = {442--450},
    2563   editor = {van Katwijk, J. and Gerbrands, J.J. and van Steen, M.R. and Tonino, J.F.M.},
    2564   address = {Heijen, The Netherlands},
    2565   author = {Vliet, L.J. van and Verbeek, P.W.}
    2566 }
    2567 @article{Maintz1998,
    2568   number = {1},
    2569   year = {1998},
    2570   title = {A survey of medical image registration},
    2571   pages = {1-37},
    2572   journal = {Medical Image Analysis},
    2573   volume = {1},
    2574   author = {Maintz, J.B.A. and Viergever, M.A.}
    2575 }
    2576 @book{Barrett1981,
    2577   year = {1981},
    2578   title = {Radiological Imaging; The Theory of Image Formation, Detection, and Processing},
    2579   annote = {key_radon},
    2580   publisher = {Academic Press},
    2581   author = {Barrett, H.H. and Swindell, W.}
    2582 }
    2583 @book{Honerkamp1998,
    2584   year = {1998},
    2585   title = {Statistical Physics: An Advanced Approach with Applications},
    2586   publisher = {Springer-Verlag},
    2587   author = {Honerkamp, J.}
    2588 }
    2589 @article{Maintz1996,
    2590   number = {4},
    2591   year = {1996},
    2592   title = {Evaluation of ridge seeking operators for multimodality medical image matching},
    2593   pages = {353--365},
    2594   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    2595   volume = {18},
    2596   author = {Maintz, J.B.A. and Elsen, P.A. van den and Viergever, M.A.}
    2597 }
    2598 @book{Hyvarinen2001,
    2599   year = {2001},
    2600   title = {Independant Component Analysis},
    2601   address = {New York},
    2602   publisher = {Wiley Interscience},
    2603   author = {{Hyv\"arinen}, A. and Karhumen, J. and Oja, E.}
    2604 }
    2605 @techreport{Almansa1998,
    2606   year = {1998},
    2607   title = {Fingerprint Enhancement by Shape Adaptation of Scale-Space Operators with Automatic Scale Selection},
    2608   annote = {Partial document},
    2609   institution = {University of the Republic of Uruguay},
    2610   author = {Almansa, A. and Lindeberg, T.}
    2611 }
    2612 @article{Hofmann1984,
    2613   number = {3},
    2614   year = {1984},
    2615   title = {Localization of flexible sites in thread-like molecules from electron micrographs. Comparison of interstitial, basement membrane and intima collagens},
    2616   pages = {325-343},
    2617   journal = {Journal of Molecular Biology},
    2618   volume = {172},
    2619   author = {Hofmann, H. and Voss, T. and {K\"uhn}, K. and Engel, J.}
    2620 }
    2621 @inproceedings{Aguado1996,
    2622   month = {16--19 September},
    2623   year = {1996},
    2624   title = {Improving Parameter Space Decomposition for the Generalised {Hough} Transform},
    2625   booktitle = {International Conference on Image Processing},
    2626   pages = {627--630},
    2627   volume = {3},
    2628   author = {Aguado, A.S. and Montiel, M.E. and Nixon, M.S.}
    2629 }
    2630 @article{Roberts2001,
    2631   number = {2},
    2632   month = {February},
    2633   year = {2001},
    2634   title = {Curvature attributes and their application to 3D interpreted horizons},
    2635   pages = {85-100},
    2636   journal = {First Break},
    2637   volume = {19},
    2638   author = {Roberts, A.}
    2639 }
    2640 @inproceedings{Vliet1993akort,
    2641   year = {1993},
    2642   title = {Curvature and Bending Energy in Digitized 2D and 3D Images },
    2643   booktitle = {SCIA'93},
    2644   pages = {1403--1410 },
    2645   address = {{Troms\o }, Norway},
    2646   author = {Vliet, L.J. van and Verbeek, P.W. }
    2647 }
    2648 @article{Koenderink1992b,
    2649   number = {4},
    2650   year = {1992},
    2651   title = {Second-order optic flow},
    2652   pages = {530-538},
    2653   journal = {Journal of the Optical Society of America A},
    2654   volume = {9},
    2655   author = {Koenderink, J.J. and Doorn, A.J. van}
    2656 }
    2657 @book{Lakowicz1999,
    2658   edition = {2nd},
    2659   year = {1999},
    2660   title = {Principles of Fluorescence Spectroscopy},
    2661   address = {New York},
    2662   publisher = {Kluwer Academic Press},
    2663   author = {Lakowicz, J.R.}
    2664 }
    2665 @article{Cardoso1998,
    2666   number = {10},
    2667   year = {1998},
    2668   title = {Blind signal separation: statistical principles},
    2669   pages = {2009-2025},
    2670   journal = {Proceedings of the IEEE},
    2671   volume = {86},
    2672   author = {Cardoso, J.-F.}
    2673 }
    2674 @article{Koenderink1992a,
    2675   number = {8},
    2676   year = {1992},
    2677   title = {Surface shape and curvature scales},
    2678   pages = {557--565},
    2679   journal = {Image and Vision Computing},
    2680   volume = {10},
    2681   author = {Koenderink, J.J. and Doorn, A.J. van}
    2682 }
    2683 @article{Kornprobst1999,
    2684   year = {1999},
    2685   title = {Image Sequence Analysis via Partial Differential Equations},
    2686   pages = {5--26},
    2687   journal = {Journal of Mathematical Imaging and Vision},
    2688   volume = {11},
    2689   author = {Kornprobst, P. and Sand, S. and Deriche, R. and Aubert, G.}
    2690 }
    2691 @article{Shevelev1998,
    2692   year = {1998},
    2693   title = {Second-order features extraction in the cat visual cortex: selective and invariant sensitivity of neurons to the shape and orientation of crosses and corners},
    2694   pages = {195-204},
    2695   journal = {BioSystems},
    2696   volume = {48},
    2697   author = {Shevelev, I.A.}
    2698 }
    2699 @article{Bacia2003,
    2700   number = {1},
    2701   year = {2003},
    2702   title = {A dynamic view of cellular processes by in vivo fluorescence auto- and cross-correlation spectroscopy},
    2703   pages = {74-85},
    2704   journal = {Methods},
    2705   volume = {29},
    2706   author = {Bacia, K. and Schwille, P.}
    2707 }
    2708 @article{Yuille1986,
    2709   number = {1},
    2710   month = {January},
    2711   year = {1986},
    2712   title = {Scaling theorems for zero crossings},
    2713   pages = {15--25},
    2714   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    2715   volume = {8},
    2716   author = {Yuille, A.L. and Poggio, T.}
    2717 }
    2718 @article{Volkmer2000,
    2719   number = {3},
    2720   year = {2000},
    2721   title = {One- and two-photon excited fluorescence lifetimes and anisotropy decays of green fluorescent proteins},
    2722   pages = {1589-1598},
    2723   journal = {Biophysical Journal},
    2724   volume = {78},
    2725   author = {Volkmer, A. and Subramaniam, V. and Birch, D.J. and Jovin, T.M.}
    2726 }
    2727 @article{Bigelow2003,
    2728   number = {9},
    2729   month = {May},
    2730   year = {2003},
    2731   title = {Confocal fluorescence spectroscopy and anisotropy imaging system},
    2732   pages = {695-697},
    2733   journal = {Optics Letters},
    2734   volume = {28},
    2735   author = {Bigelow, C.E. and Conover, D.L. and Foster, T.H.}
    2736 }
    2737 @inproceedings{Coeurjolly2001,
    2738   series = {Lecture Notes on Computer Science},
    2739   month = {May},
    2740   year = {2001},
    2741   title = {Discrete Curvature Based on Osculating Circle Estimation},
    2742   booktitle = {Visual Form 2001},
    2743   pages = {303--312},
    2744   editor = {Arcelli, C. and Cordella, L.P. and Sanniti di Baja, G. },
    2745   volume = {2059},
    2746   address = {Capri, Italy},
    2747   publisher = {Springer-Verlag},
    2748   author = {Coeurjolly, D. and Miguet, S. and Tougne, L.}
    2749 }
    2750 @book{Kak1988,
    2751   year = {1988},
    2752   title = {Principles of Computerized Tomographic Imaging},
    2753   publisher = {IEEE Press},
    2754   author = {Kak, A. C. and Slaney, M.}
    2755 }
    2756 @inproceedings{Cao1999,
    2757   series = {Lecture Notes on Computer Science},
    2758   month = {September},
    2759   year = {1999},
    2760   title = {Morphological Scale Space and Mathematical Morphology},
    2761   booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)},
    2762   pages = {164--174},
    2763   editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
    2764   volume = {1682},
    2765   address = {Berlin Heidelberg},
    2766   publisher = {Springer-Verlag},
    2767   author = {Cao, {Fr\'ed\'eric}}
    2768 }
    2769 @book{Leibovic1990,
    2770   year = {1990},
    2771   title = {Science of Vision},
    2772   publisher = {Springer-Verlag},
    2773   author = {Leibovic (ed), K.N.}
    2774 }
    2775 @inbook{Hediger2004,
    2776   series = {Methods in Enzymology},
    2777   year = {2004},
    2778   title = {Methods for Visualizing Chromatin Dynamics in Living Yeast},
    2779   volume = {375},
    2780   chapter = {22},
    2781   publisher = {Elsevier Academic Press},
    2782   author = {Hediger, F. and Taddei, A. and Neumann, F.R. and Gasser, S.M.}
    2783 }
    2784 @article{Axelrod2001,
    2785   year = {2001},
    2786   title = {Total Internal Reflection Fluorescence Microscopy in Cell Biology},
    2787   pages = {764-774},
    2788   journal = {Traffic},
    2789   volume = {2},
    2790   author = {Axelrod, D.}
    2791 }
    2792 @article{Kuwahara1980,
    2793   year = {1980},
    2794   title = {Image enhancement and left ventricular contour extraction techniques applied to radioisotope angiocardiograms},
    2795   pages = {107-119},
    2796   journal = {Audiomedica},
    2797   volume = {3},
    2798   author = {Kuwahara, M. and Hachimura, K. and Kinoshita, M.}
    2799 }
    2800 @inproceedings{Whitworth1999,
    2801   year = {1999},
    2802   title = {The imaging and measurement of bubbles in bread doughs},
    2803   booktitle = {Bubbles In Food},
    2804   pages = {221-231},
    2805   editor = {Campbell, G.M. and Webb, C. and Pandiella, S.S.},
    2806   address = {St. Paul, USA},
    2807   publisher = {Eagan Press},
    2808   author = {Whitworth, M.B. and Alava, J.M.}
    2809 }
    2810 @article{Daugman1988,
    2811   number = {7},
    2812   year = {1988},
    2813   title = {Pattern and motion vision without Laplacian zero-crossings},
    2814   pages = {1142--1148},
    2815   journal = {Journal of the Optical Society of America A},
    2816   volume = {5},
    2817   author = {Daugman, J.G.}
    2818 }
    2819 @book{Rutishauer1990,
    2820   year = {1990},
    2821   title = {Lectures on numerical mathematics},
    2822   publisher = {{Birkh\"auser}},
    2823   author = {Rutishauer, H.}
    2824 }
    2825 @article{Nagel1983,
    2826   year = {1983},
    2827   title = {Displacement vectors derived from second-order intensity variations in image sequences},
    2828   pages = {85-117},
    2829   journal = {Computer Graphics and Image Processing},
    2830   volume = {21},
    2831   author = {Nagel, H.H.}
    2832 }
    2833 @misc{BaddeleyXXXX,
    2834   title = {Spatial Sampling and Censoring},
    2835   howpublished = {Some chapter. From www},
    2836   author = {Baddeley, A.}
    2837 }
    2838 @article{Nagel1986,
    2839   year = {1986},
    2840   title = {An investigation of smoothness constraints for the estimation of displacement vector fields form image sequences},
    2841   pages = {168-176},
    2842   journal = {IEEE Transactions of Pattern Recognition and Machine Intelligence},
    2843   volume = {8},
    2844   author = {Nagel, H.H. and Enkelmann, W.}
    2845 }
    2846 @article{Daugman1985,
    2847   number = {7},
    2848   month = {July},
    2849   year = {1985},
    2850   title = {Uncertainty Relation for Resolution in Space, Spatial Frequency, and Orientation Optimized by Two-dimensional Visual Cortical Filters},
    2851   pages = {1160--1169},
    2852   journal = {Journal of the Optical Society of America A},
    2853   volume = {2},
    2854   author = {Daugman, J.G.}
    2855 }
    2856 @article{Sorzano2004,
    2857   year = {2004},
    2858   title = {{XMIPP:} a new generation of an open-source image processing package for electron microscopy},
    2859   pages = {194-204},
    2860   journal = {Journal of Structural Biology},
    2861   volume = {148},
    2862   author = {Sorzano, C.O.S. and Marabini, R. and Vel\'azquez-Muriel, J. and Bilbao-Castro, J.R. and Scherees, S.H.W. and Carazo, J.M. and Pascual-Montano, A.}
    2863 }
    2864 @article{Sorzano2001,
    2865   year = {2001},
    2866   title = {The Effect of Overabundant Projection Directions on {3D} Reconstruction Algorithms},
    2867   pages = {108-118},
    2868   journal = {Journal of Structural Biology},
    2869   volume = {133},
    2870   author = {Sorzano, C.O.S. and Marabini, R. and Boisset, N. and Rietzel, E. and {Schr\"oder}, R. and Herman, G.T. and Carazo, J.M.}
    2871 }
    2872 @inproceedings{Kerbyson1995,
    2873   month = {4--6 July},
    2874   year = {1995},
    2875   title = {Circle Detection using {Hough} Transform Filters},
    2876   booktitle = {Image Processing and Its Applications},
    2877   pages = {370--374},
    2878   author = {Kerbyson, D.J. and Atherton, T.J.}
    2879 }
    2880 @article{Meyer2004,
    2881   year = {2004},
    2882   title = {A new method for the determination of the wave aberration function for high-resolution {TEM}. {2. Measurement} of the antisymmetric aberrations},
    2883   pages = {115-123},
    2884   journal = {Ultramicroscopy},
    2885   volume = {99},
    2886   author = {Meyer, R.R. and Kirkland, A.I. and Saxton, W.O.}
    2887 }
    2888 @article{Lin1999,
    2889   year = {1999},
    2890   title = {The Refined Crystal Structure of Cowpea Mosaic Virus at 2.8 Resolution},
    2891   pages = {20-34},
    2892   journal = {Virology},
    2893   volume = {265},
    2894   author = {Lin, T. and Chen, Z. and Usha, R. and Stauffacher, C.V. and Dai, J.-B. and Schmidt, T. and Johnson, J.E.}
    2895 }
    2896 @book{Mitra2000,
    2897   year = {2000},
    2898   title = {Nonlinear Image Processing},
    2899   publisher = {Academic Press},
    2900   author = {Mitra (Ed), S. and Sicuranza (Ed), G.}
    2901 }
    2902 @book{HandbookCP1980,
    2903   edition = {60th},
    2904   year = {1980},
    2905   title = {Handbook of Chemistry and Physics},
    2906   editor = {Lide, D.R.},
    2907   publisher = {CRC Press}
    2908 }
    2909 @article{Olsen1994,
    2910   number = {8},
    2911   month = {August},
    2912   year = {1994},
    2913   title = {Wavelet Localization of the {R}adon Transform},
    2914   pages = {2055--2067},
    2915   journal = {IEEE Transactions on Signal Processing},
    2916   volume = {42},
    2917   author = {Olsen, T. and DeStefano, J.}
    2918 }
    2919 @inproceedings{Wijk2004,
    2920   year = {2004},
    2921   title = {On Normalized Convolution to Measure Curvature Features for Automatic Polyp Detection},
    2922   booktitle = {LNCS 3216, MICCAI'04},
    2923   pages = {200-208},
    2924   editor = {Barillot, C. and Haynor, D.R. and Hellier, P.},
    2925   author = {Wijk, C. van and Truyen, R. and Gelder, R.E. van and Vliet, L.J. van and Vos, F.M.}
    2926 }
    2927 @article{Aitken1995,
    2928   number = {4},
    2929   year = {1995},
    2930   title = {A Comparison of Rotational Representation in Structure and Motion Estimation for Maneuvering Objects},
    2931   pages = {516--520},
    2932   journal = {IEEE Transactions on Image Processing},
    2933   volume = {4},
    2934   author = {Aitken, V.C. and Schwartz, H.M.}
    2935 }
    2936 @article{Barber1996,
    2937   number = {4},
    2938   month = {December},
    2939   year = {1996},
    2940   title = {The Quickhull Algorithm for Convex Hulls},
    2941   pages = {469--483},
    2942   journal = {ACM Transactions on Mathematical Software},
    2943   volume = {22},
    2944   author = {Barber, C.B. and Dobkin, D.P. and Huhdanpaa, H.}
    2945 }
    2946 @book{Wilson1984a,
    2947   year = {1984},
    2948   title = {Theory and Practice of Scanning Optical Microscopy},
    2949   address = {London,New York},
    2950   annote = {ph2341},
    2951   publisher = {Academic Press},
    2952   author = {Wilson, T. and Sheppard, C.J.R.}
    2953 }
    2954 @misc{Zach2001,
    2955   year = {2001},
    2956   title = {Method for detecting geometrical-optical aberrations},
    2957   howpublished = {WO 01.56057},
    2958   author = {Zach, J.}
    2959 }
    2960 @article{Lee2001,
    2961   number = {16},
    2962   month = {July},
    2963   year = {2001},
    2964   title = {Neural Synergy in Visual Grouping: When Good Continuation Meets Common Fate},
    2965   pages = {2057--2064},
    2966   journal = {Vision Research},
    2967   volume = {41},
    2968   author = {Lee, S.-H. and Blake, R.}
    2969 }
    2970 @article{Lichte1996,
    2971   year = {1996},
    2972   title = {Electron holography: optimum position of the biprism in the electron microscope},
    2973   pages = {89-109},
    2974   journal = {Ultramicroscopy},
    2975   volume = {64},
    2976   author = {Lichte, H.}
    2977 }
    2978 @article{Lee2005,
    2979   number = {4},
    2980   year = {2005},
    2981   title = {Accurate {FRET} Measurements within Single Diffusing Biomolecules Using Alternating-Laser Excitation},
    2982   pages = {2939-2953},
    2983   journal = {Biophysical Journal},
    2984   volume = {88},
    2985   author = {Lee, N.K. and Kapanidis, A.N. and Wang, Y. and Michalet, X. and Mukhopadhyay, J. and Ebright, R.H. and Weiss, S.}
    2986 }
    2987 @misc{Verbeek1999,
    2988   year = {1999},
    2989   note = {The GST as a projection operator},
    2990   howpublished = {private communications},
    2991   author = {Verbeek, P.W.}
    2992 }
    2993 @article{Cuisenaire1999,
    2994   number = {2},
    2995   year = {1999},
    2996   title = {Fast Euclidean distance transformation by propagation using multiple neighborhoods},
    2997   pages = {163-172},
    2998   journal = { Computer Vision and Image Understanding},
    2999   volume = {76},
    3000   author = {Cuisenaire, O. and Macq, B.}
    3001 }
    3002 @inproceedings{Verbeek1995,
    3003   month = {June 6-9},
    3004   year = {1995},
    3005   title = {Approximate Analytic Paraboloid Dilation},
    3006   booktitle = {9th Scandinavian Conference on Image Analysis (Uppsala, Sweden)},
    3007   pages = {95--102},
    3008   editor = {Borgefors, G.},
    3009   volume = {1},
    3010   author = {Verbeek, P.W. and Vliet, L.J. van}
    3011 }
    3012 @inproceedings{Verbeek1998,
    3013   month = {17-20 August},
    3014   year = {1998},
    3015   title = {Improved Curvature and Anisotropy Estimation for Curved Line Bundles},
    3016   booktitle = {ICPR'98, Proc. 14th Int. Conference on Pattern Recognition},
    3017   pages = {528--533},
    3018   editor = {Jain, A.K. and Venkatesh, S. and Lovell, B.C.},
    3019   publisher = {IEEE Computer Society Press, Los Alamitos},
    3020   author = {Verbeek, P.W. and van Vliet, L.J. and van de Weijer, J.}
    3021 }
    3022 @article{Verbeek1990,
    3023   year = {1990},
    3024   title = {Shading from shape, the eikonal equation solved by grey-weighted distance transform},
    3025   pages = {681--690},
    3026   journal = {Pattern Recognition Letters},
    3027   volume = {11},
    3028   author = {Verbeek, P.W. and Verwer, B.J.H}
    3029 }
    3030 @misc{Verbeek1996,
    3031   year = {1996},
    3032   title = {Angular Deconvolution},
    3033   howpublished = {Internal Communication},
    3034   author = {Verbeek, P.W.}
    3035 }
    3036 @article{Verbeek1994,
    3037   number = {7},
    3038   year = {1994},
    3039   title = {On the location error of curved edges in low-pass filtered {2-D} and {3-D} images},
    3040   pages = {726--733},
    3041   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3042   volume = {16},
    3043   author = {Verbeek, P.W. and Vliet, L.J. van}
    3044 }
    3045 @article{Verbeek1993,
    3046   number = {1},
    3047   year = {1993},
    3048   title = {Estimators of {2D} edge length and position, {3D} surface area and position in sampled grey-valued images},
    3049   pages = {46--61},
    3050   journal = {BioImaging},
    3051   volume = {1},
    3052   author = {Verbeek, P.W. and Vliet, L.J. van}
    3053 }
    3054 @inproceedings{Verbeek1992,
    3055   month = {August 30-September 3},
    3056   year = {1992},
    3057   title = {Line and Edge Detection by Symmetry Filters},
    3058   booktitle = {Proc. 11th IAPR Int. Conf. on Pattern Recognition (ICPR11, The Hague, The Netherlands)},
    3059   pages = {749--753},
    3060   volume = {III},
    3061   publisher = {IEEE Computer Society Press, Los Alamitos, USA},
    3062   author = {Verbeek, P.W. and Vliet, L.J. van}
    3063 }
    3064 @article{Griffith1973,
    3065   number = {4},
    3066   month = {April},
    3067   year = {1973},
    3068   title = {Edge Detection in Simple Scenes Using A Priori Information},
    3069   pages = {371--381},
    3070   journal = {IEEE Transactions on Computers},
    3071   volume = {22},
    3072   author = {Griffith, A.K.}
    3073 }
    3074 @article{Chermant2001,
    3075   year = {2001},
    3076   title = {Some Fields of Applications of Automatic Image Analysis in Civil Engineering},
    3077   pages = {157--169},
    3078   journal = {Cement {\&} Concrete Composites},
    3079   volume = {23},
    3080   author = {Chermant, J.-L. and Chermant, L. and Coster, M. and Dequiedt, A.-S. and Redon, C.}
    3081 }
    3082 @article{Thrift1983,
    3083   number = {3},
    3084   year = {1983},
    3085   title = {Approximating Point-Set Images by Line Segments Using a Variation of the {H}ough Transform},
    3086   pages = {383--394},
    3087   journal = {Computer Vision, Graphics and Image Processing},
    3088   volume = {21},
    3089   annote = {key_radon},
    3090   author = {Thrift, P.R. and Dunn, S.M.}
    3091 }
    3092 @misc{Rull1993,
    3093   year = {1993},
    3094   title = {{BARRY}: An Autonomous Train-Spotter},
    3095   author = {Rull, P.H.}
    3096 }
    3097 @article{Schellman1980a,
    3098   number = {3},
    3099   year = {1980},
    3100   title = {The flexibility of {DNA : II. Spontaneous} and ligand induced distortions},
    3101   pages = {329-337},
    3102   journal = {Biophysical Chemistry},
    3103   volume = {11},
    3104   author = {Schellman, J.A.}
    3105 }
    3106 @article{Tang2001,
    3107   number = {8},
    3108   year = {2001},
    3109   title = {N-dimensional tensor voting and application to epipolar geometry estimation},
    3110   pages = {829 -844},
    3111   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3112   volume = {23},
    3113   author = {Tang, Chi-Keung and Medioni, G. and Lee, Mi-Suen}
    3114 }
    3115 @article{Park1996,
    3116   number = {11},
    3117   year = {1996},
    3118   title = {Scale-Space Using Mathematical Morphology},
    3119   pages = {1121--1126},
    3120   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3121   volume = {18},
    3122   author = {Park, K.-R. and Lee, C.-N.}
    3123 }
    3124 @book{Haykin1999,
    3125   edition = {second},
    3126   year = {1999},
    3127   title = {Neural Networks, a comprehensive foundation},
    3128   publisher = {Prentice-Hall},
    3129   author = {Haykin, S.}
    3130 }
    3131 @inproceedings{Faugeras1992,
    3132   series = {Lecture Notes in Computer Science 588},
    3133   month = {May},
    3134   year = {1992},
    3135   title = {What Can Be Seen in Three Dimensions with an Uncalibrated Stereo Rig},
    3136   booktitle = {Second European Conference on Computer Vision},
    3137   pages = {563--578},
    3138   editor = {Sandini, G.},
    3139   address = {Santa Margherita Ligure, Italy},
    3140   publisher = {Springer},
    3141   author = {Faugeras, O.D.}
    3142 }
    3143 @article{Dequiedt2001,
    3144   year = {2001},
    3145   title = {Study of Phase Dispersion in Concrete by Image Analysis},
    3146   pages = {215--226},
    3147   journal = {Cement \& Concrete Composites},
    3148   volume = {23},
    3149   author = {Dequiedt, A.-S. and Coster, M. and Chermant, L. and Chermant, J.-L.}
    3150 }
    3151 @article{Tang2002,
    3152   number = {6},
    3153   year = {2002},
    3154   title = {Curvature-Augmented Tensor Voting for Shape Interference from Noisy 3D Data},
    3155   pages = {858--864},
    3156   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3157   volume = {24},
    3158   author = {Tang, C.-K. and Medioni, G.}
    3159 }
    3160 @inproceedings{Hartley1992a,
    3161   series = {Lecture Notes in Computer Science 588},
    3162   month = {May},
    3163   year = {1992},
    3164   title = {Estimation of Relative Camera Positions for Uncalibrated Cameras},
    3165   booktitle = {Second European Conference on Computer Vision},
    3166   pages = {579--587},
    3167   editor = {Sandini, G.},
    3168   address = {Santa Margherita Ligure, Italy},
    3169   publisher = {Springer},
    3170   author = {Hartley, R.I.}
    3171 }
    3172 @article{Dalen2002,
    3173   month = {November},
    3174   year = {2002},
    3175   title = {Determination of the Water Droplet Size Distribution of Fat Spreads using Confocal Scanning Laser Microscopy},
    3176   pages = {116--133},
    3177   journal = {Journal of Microscopy},
    3178   volume = {208 Pt. 2},
    3179   author = {Dalen, G. van}
    3180 }
    3181 @article{Bergsma2001,
    3182   number = {4},
    3183   year = {2001},
    3184   title = {Velocity Estimation of Spots in 3D Confocal Images Sequences of Living Cells},
    3185   pages = {261--272},
    3186   journal = {Cytometry},
    3187   volume = {43},
    3188   author = {Bergsma, C.B.J. and Streekstra, G.J. and Smeulders, A.W.M. and Manders, E.M.M.}
    3189 }
    3190 @article{Florack1999,
    3191   number = {2/3},
    3192   year = {1999},
    3193   title = {Pseudo-linear Scale-space Theory},
    3194   pages = {247--259},
    3195   journal = {International Journal of Computer Vision},
    3196   volume = {31},
    3197   author = {Florack, L.M.J. and Maas, R. and Niessen, W.J.}
    3198 }
    3199 @phdthesis{Florack1993,
    3200   year = {1993},
    3201   title = {The Syntactical Structure of Scalar Images},
    3202   school = {University of Utrecht, The Netherlands},
    3203   author = {Florack, L.M.J.}
    3204 }
    3205 @article{Weijer2001a,
    3206   number = {9},
    3207   year = {2001},
    3208   title = {Curvature estimation in oriented patterns using curvilinear models applied to gradient vector fields},
    3209   pages = {1035 -1042},
    3210   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3211   volume = {23},
    3212   author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van}
    3213 }
    3214 @article{Florack1998,
    3215   number = {3},
    3216   year = {1998},
    3217   title = {The Intrinsic Structure of Optic Flow Incorporating Measurement Duality},
    3218   pages = {263--286},
    3219   journal = {International Journal of Computer Vision},
    3220   volume = {27},
    3221   author = {Florack, L.M.J. and Niessen, W.J. and Nielsen, M.}
    3222 }
    3223 @article{Florack1992,
    3224   number = {6},
    3225   month = {July},
    3226   year = {1992},
    3227   title = {Scale and the Differential Structure of Images},
    3228   pages = {376--388},
    3229   journal = {Image and Vision Computing},
    3230   volume = {10},
    3231   author = {Florack, L.M.J. and Haar Romeny, B.M. ter and Koenderink, J.J. and Viergever, M.A.}
    3232 }
    3233 @article{Florack1994,
    3234   number = {4},
    3235   month = {December},
    3236   year = {1994},
    3237   title = {Linear Scale-Space},
    3238   pages = {325--351},
    3239   journal = {Journal of Mathematical Imaging and Vision},
    3240   volume = {4},
    3241   author = {Florack, L.M.J. and Haar Romeny, B.M. ter and Koenderink, J.J. and Viergever, M.A.}
    3242 }
    3243 @book{Florack1997,
    3244   year = {1997},
    3245   title = {Image Structure},
    3246   publisher = {Kluwer Academic Publishers},
    3247   author = {Florack, L.M.J.}
    3248 }
    3249 @article{Kim1990,
    3250   number = {2},
    3251   year = {1990},
    3252   title = {Shape Description of Biological Objects via Stereo Light Microscopy},
    3253   pages = {475--489},
    3254   journal = {IEEE Transactions on Systems},
    3255   volume = {20},
    3256   author = {Kim, N.H. and Bovik, A.C. and Aggarwal, S.J.}
    3257 }
    3258 @article{Borgefors1996,
    3259   number = {3},
    3260   year = {1996},
    3261   title = {On digital distance transforms in three dimensions},
    3262   pages = {344-371},
    3263   journal = {Computer Vision and Image Understanding},
    3264   volume = {64},
    3265   author = {Borgefors, G.}
    3266 }
    3267 @article{Komenda2001,
    3268   number = {2--3},
    3269   year = {2001},
    3270   title = {Automatic Recognition of Complex Microstructures using the Image Classifier},
    3271   pages = {87--92},
    3272   journal = {Materials Characterization},
    3273   volume = {46},
    3274   author = {Komenda, J.}
    3275 }
    3276 @article{Vetterli1984,
    3277   year = {1984},
    3278   title = {Simple {FFT} and {DCT} Algorithms with Reduced Number of Operations},
    3279   pages = {267--278},
    3280   journal = {Signal Processing},
    3281   volume = {6},
    3282   annote = {key_fft},
    3283   author = {Vetterli, M. and Nussbaumer, H.J.}
    3284 }
    3285 @article{Vetterli1986,
    3286   number = {3},
    3287   year = {1986},
    3288   title = {Filter Banks Allowing Perfect Reconstruction},
    3289   pages = {219--244},
    3290   journal = {Signal Processing},
    3291   volume = {10},
    3292   author = {Vetterli, M.}
    3293 }
    3294 @article{Florack1996,
    3295   year = {1996},
    3296   title = {The {Gaussian} Scale-Space Paradigm and the Multiscale Local Jet},
    3297   pages = {61--75},
    3298   journal = {International Journal of Computer Vision},
    3299   volume = {18},
    3300   author = {Florack, L.M.J. and Haar Romeny, B.M. ter and Viergever, M.A. and Koenderink, J.J.}
    3301 }
    3302 @phdthesis{Molenaar2003,
    3303   month = {June},
    3304   year = {2003},
    3305   title = {Methods for molecular analysis in living cells},
    3306   address = {Leiden, The Netherlands},
    3307   school = {Leiden University Medical Center},
    3308   author = {Molenaar, C.}
    3309 }
    3310 @inproceedings{Leavers1990,
    3311   year = {1990},
    3312   title = {The Dynamic Generalized {H}ough transform},
    3313   booktitle = {Computer Vision -- ECCV90. Proceedings, 1990},
    3314   pages = {592--594},
    3315   editor = {O. Faugeras},
    3316   publisher = {Springer-Verlag},
    3317   author = {Leavers, V.F.}
    3318 }
    3319 @book{Leavers1992,
    3320   year = {1992},
    3321   title = {Shape Detection in Computer Vision Using the {H}ough Transform},
    3322   address = {London},
    3323   publisher = {Springer-Verlag},
    3324   author = {Leavers, V.F.}
    3325 }
    3326 @article{Morgan2002,
    3327   year = {2002},
    3328   title = {Structure of the Mammalian Ribosome-Channel Complex at 17 Resolution},
    3329   pages = {871-886},
    3330   journal = {Journal of Molecular Biology},
    3331   volume = {324},
    3332   author = {Morgan, D.G. and Mnntret, J.-F. and Neuhof, A. and Rapoport, T.A. and Akey, C.W.}
    3333 }
    3334 @article{Su2003,
    3335   year = {2003},
    3336   title = {High resolution EELS using monochromator and high performance spectrometer: comparison of $V_2O_5$ {ELNES} with {NEXAFS} and band structure calculations},
    3337   pages = {235-238},
    3338   journal = {Micron},
    3339   volume = {34},
    3340   author = {Su, D.S. and Zandbergen, H.W. and Tiemeijer, P.C. and Kothleitner, G. and {H\"avecker}, M. and {H\'ebert}, C. and Knop-Gericke, A. and Freitag, B.H. and Hofer, F. and {Schl\"ogl}, R.}
    3341 }
    3342 @article{Thirion1995,
    3343   number = {2},
    3344   year = {1995},
    3345   title = {Computing the differential characteristics of isointensity surfaces},
    3346   pages = {190--202},
    3347   journal = {Computer Vision and Image Understanding},
    3348   volume = {61},
    3349   author = {Thirion, J.P. and Gourdon, A.}
    3350 }
    3351 @article{Rao1992,
    3352   number = {7},
    3353   month = {July},
    3354   year = {1992},
    3355   title = {Computerized Flow Field Analysis: Oriented Texture Fields},
    3356   pages = {693--709},
    3357   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3358   volume = {14},
    3359   author = {Rao, A.R. and Jain, R.C.}
    3360 }
    3361 @article{Potter1999,
    3362   year = {1999},
    3363   title = {Leginon: a system for fully automated acquisition of 1000 electron micrographs a day},
    3364   pages = {153-161},
    3365   journal = {Ultramicroscopy},
    3366   volume = {77},
    3367   author = {Potter, C.S. and Chu, H. and Frey, B. and Green, C. and Kisseberth, N. and Madden, T.J. and Miller, K.L. and Nahrstedt, K. and Pulokas, J. and Reilein, A. and Tcheng, D. and Weber, D. and Carragher, B.}
    3368 }
    3369 @article{Ferraro1988,
    3370   number = {5},
    3371   month = {May},
    3372   year = {1988},
    3373   title = {Relationship between Integral Transform Invariances and {Lie} Group Theory},
    3374   pages = {738--742},
    3375   journal = {Journal of the Optical Society of America A},
    3376   volume = {5},
    3377   author = {Ferraro, M. and Caelli, T.M.}
    3378 }
    3379 @article{Rao1991,
    3380   number = {2},
    3381   month = {March},
    3382   year = {1991},
    3383   title = {Computing Oriented Texture Fields},
    3384   pages = {157--185},
    3385   journal = {CVGIP: Graphical Models and Image Processing},
    3386   volume = {53},
    3387   author = {Rao, A.R. and Schunck, B.G.}
    3388 }
    3389 @article{Gaspar1997,
    3390   year = {1997},
    3391   title = {Partially Folded States of the Capsid Protein of Cowpea Severe Mosaic Virus in the Disassembly Pathway},
    3392   pages = {456-466},
    3393   journal = {Journal of Molecular Biology},
    3394   volume = {273},
    3395   author = {Gaspar, L.P. and Johnson, J.E. and Silva, J.L. and Poian, A.T. da}
    3396 }
    3397 @article{Rieger2004,
    3398   number = {6},
    3399   year = {2004},
    3400   title = {A systematic approach to {nD} orientation representation},
    3401   pages = {453-459},
    3402   journal = {Image and Vision Computing},
    3403   volume = {22},
    3404   author = {Rieger, B. and Vliet, L.J. van}
    3405 }
    3406 @book{Papoulis1977,
    3407   year = {1977},
    3408   title = {Signal Analysis},
    3409   address = {New York},
    3410   publisher = {McGraw-Hill},
    3411   author = {Papoulis, A.}
    3412 }
    3413 @article{Hanbury2001,
    3414   number = {12},
    3415   month = {December},
    3416   year = {2001},
    3417   title = {Morphological Operators on the Unit Circle},
    3418   pages = {1842--1850},
    3419   journal = {IEEE Transactions on Image Processing},
    3420   volume = {10},
    3421   author = {Hanbury, Allan G. and Serra, Jean}
    3422 }
    3423 @inbook{Porat1994a,
    3424   year = {1994},
    3425   title = {Digital Signal Processing of Random Signals: Theory and Methods},
    3426   chapter = {11.4},
    3427   publisher = {Prentice Hall},
    3428   author = {Porat, B.}
    3429 }
    3430 @article{Villasenor1987,
    3431   month = {December},
    3432   year = {1987},
    3433   title = {Optical Phase Obtained by Analogue Hartley Transformation},
    3434   pages = {735--737},
    3435   journal = {Nature},
    3436   volume = {330},
    3437   author = {Villasenor, J. and Bracewell, R.N.}
    3438 }
    3439 @article{Lacey1998,
    3440   number = {5},
    3441   year = {1998},
    3442   title = {A Multi-Stage Approach to the Dense Estimation of Disparity from Stereo {SEM} Images},
    3443   pages = {373--383},
    3444   journal = {Image and Vision Computing},
    3445   volume = {16},
    3446   author = {Lacey, A.J. and Thacker, N.A. and Crossley, S. and Yates, R.B.}
    3447 }
    3448 @article{Sengupta2001,
    3449   year = {2001},
    3450   title = {Visualization of protein {S1} within the {30S} ribosomal subunit and its interaction with messenger {RNA}},
    3451   pages = {11991-11996},
    3452   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    3453   volume = {98},
    3454   author = {Sengupta, J. and Agrawal, R.K. and Frank, J.}
    3455 }
    3456 @article{Domer2003,
    3457   number = {10},
    3458   year = {2003},
    3459   title = {High-speed transmission electron microscope},
    3460   pages = {4369-4372},
    3461   journal = {Review of Scientific Instruments},
    3462   volume = {74},
    3463   author = {{D\"omer}, H. and Bostanjoglo, O.}
    3464 }
    3465 @inproceedings{Lacey1996,
    3466   year = {1996},
    3467   title = {Surface Approximation from Industrial {SEM} Images},
    3468   booktitle = {Proceedings of the British Machine Vision Conference},
    3469   address = {Edinburgh, Scotland},
    3470   author = {Lacey, A.J. and Thacker, N.A. and Yates, R.B.},
    3471   organization = {University of Edinburgh}
    3472 }
    3473 @article{Kimia1992,
    3474   year = {1992},
    3475   title = {On the Evolution of Curves via a Function of Curvature. I. The Classical Case},
    3476   pages = {438--458},
    3477   journal = {Journal of Mathematical Analysis and Applications},
    3478   volume = {163},
    3479   author = {Kimia, B. and Tannenbaum, A. and Zucker, S.W.}
    3480 }
    3481 @unpublished{Vliet1998b,
    3482   title = {Adaptive Filtering. From Scaleable Elliptic, and Banana to Leech Filters},
    3483   author = {Vliet, L.J. van}
    3484 }
    3485 @article{Giro2004,
    3486   number = {4},
    3487   year = {2004},
    3488   title = {Single Molecule Studies of {RNA} Secondary Structure: {AFM} of {TYMV} Viral {RNA}},
    3489   pages = {235-245},
    3490   journal = {Microscopy Research and Technique},
    3491   volume = {65},
    3492   author = {Giro, A. and Bergia, A. and Zuccheri, G. and Bink, H.H.J. and Pleij, C.W.A. and Samori, B.}
    3493 }
    3494 @inbook{Vliet1998a,
    3495   edition = {2nd},
    3496   year = {1998},
    3497   title = {Cell Biology},
    3498   pages = {109-120},
    3499   editor = {Celis, J.E.},
    3500   volume = {III},
    3501   address = {New York},
    3502   chapter = {Digital Fluorescence Imaging Using Cooled {CCD} Array Cameras},
    3503   publisher = {Academic Press},
    3504   author = {Vliet, L.J. van and Sudar, D. and Young, I.T.}
    3505 }
    3506 @unpublished{Vliet1998c,
    3507   title = {Detection of End-points},
    3508   author = {Vliet, L.J. van}
    3509 }
    3510 @article{Pulokas1999,
    3511   year = {1999},
    3512   title = {Improving the positional accuracy of the goniometer on the {Philips CM} series {TEM}},
    3513   pages = {250-256},
    3514   journal = {Journal of Structural Biology},
    3515   volume = {128},
    3516   author = {Pulokas, J. and Green, C. and Kisseberth, N. and Potter, C.S. and Carragher, B.}
    3517 }
    3518 @article{Ficz2005,
    3519   number = {17},
    3520   year = {2006},
    3521   title = {Polycomb group complexes exchange rapidly in living {Drosophila}},
    3522   pages = {3964-3976},
    3523   journal = {Development},
    3524   volume = {132},
    3525   author = {Ficz, G. and Heintzmann, R. and Arndt-Jovin, D.J.}
    3526 }
    3527 @article{Thovert1993,
    3528   month = {April},
    3529   year = {1993},
    3530   title = {Computerized Characterization of the Geometry of Real Porous Media: their Discretization, Analysis and Interpretation},
    3531   pages = {65--79},
    3532   journal = {Journal of Microscopy},
    3533   volume = {170, Pt 1},
    3534   author = {Thovert, J.F. and Salles, J. and Adler, P.M.}
    3535 }
    3536 @book{Kincaid1991,
    3537   year = {1991},
    3538   title = {Numerical analysis; mathematics of scientific computing},
    3539   address = {Brooks/Cole},
    3540   publisher = {Pacific Grove},
    3541   author = {Kincaid,D.}
    3542 }
    3543 @article{Netten1994,
    3544   year = {1994},
    3545   title = {A fast scanner for fluorescence microscopy using a {2-D CCD} amd time delayed integration},
    3546   pages = {184-192},
    3547   journal = {Bioimaging},
    3548   volume = {2},
    3549   author = {Netten, H. and Vliet, L.J. van and Boddeke, F.R. and Jong, P. de and Young, I.T.}
    3550 }
    3551 @article{Loncaric1998,
    3552   number = {8},
    3553   year = {1998},
    3554   title = {A Survey of Shape Analysis Techniques},
    3555   pages = {983--1001},
    3556   journal = {Pattern Recognition},
    3557   volume = {31},
    3558   author = {Loncaric, S.}
    3559 }
    3560 @article{Malladi1995,
    3561   number = {2},
    3562   month = {February},
    3563   year = {1995},
    3564   title = {Shape Modeling with Front Propagation: A Level Set Approach},
    3565   pages = {158--175},
    3566   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3567   volume = {17},
    3568   author = {Malladi, R. and Sethian, J.A. and Vemuri, B.C.}
    3569 }
    3570 @book{Bronstein1999,
    3571   edition = {4th},
    3572   year = {1999},
    3573   title = {Taschenbuch der Mathematik},
    3574   address = {Thun, Frankfurt (Main)},
    3575   publisher = {Verlag Harri Deutsch},
    3576   author = {Bronstein, I. N. and Semendjajew, K. A. and Musiol, G. and {M\"uhlig}, H.}
    3577 }
    3578 @article{Kundur1996,
    3579   number = {3},
    3580   month = {May},
    3581   year = {1996},
    3582   title = {Blind Image Deconvolution},
    3583   pages = {43--64},
    3584   journal = {IEEE Signal Processing Magazine},
    3585   volume = {13},
    3586   author = {Kundur, D. and Hatzinakos, D.}
    3587 }
    3588 @article{Levi1970,
    3589   number = {1},
    3590   month = {August},
    3591   year = {1970},
    3592   title = {A grey-weighted skeleton},
    3593   pages = {62-91},
    3594   journal = {Information and Control},
    3595   volume = {17},
    3596   author = {Levi, G. and Montanari, U.}
    3597 }
    3598 @book{Press1992,
    3599   edition = {2},
    3600   year = {1992},
    3601   title = {Numerical Recipes in C: The Art of Scientific Computing},
    3602   address = {Cambridge},
    3603   publisher = {Cambridge University Press},
    3604   author = {Press, W.H. and Teukolsky, S.A. and Vetterling, W.T. and Flannery, B.P.}
    3605 }
    3606 @article{Luengo2005,
    3607   number = {12},
    3608   year = {2005},
    3609   title = {The Generalized Radon Transform: Sampling, Accuracy and Memory Considerations},
    3610   pages = {2494-2505},
    3611   journal = {Pattern Recognition},
    3612   volume = {38},
    3613   author = {Luengo Hendriks, C.L. and Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van}
    3614 }
    3615 @inproceedings{Lambert2000,
    3616   year = {2000},
    3617   title = {Filtering and Segmentation: the Specificity of Color Images},
    3618   booktitle = {International Conference on Color in Graphics and Image Processing CGIP'2000},
    3619   author = {Lambert, P. and Macaire, L.}
    3620 }
    3621 @article{Rivetti1998,
    3622   number = {1},
    3623   year = {1998},
    3624   title = {Polymer chain statistics and conformational analysis of {DNA} molecules with bends or sections of different flexibility},
    3625   pages = {41-59},
    3626   journal = {Journal of Molecular Biology},
    3627   volume = {280},
    3628   author = {Rivetti, C. and Walker, C. and Bustamante, C.}
    3629 }
    3630 @inproceedings{Luengo2000,
    3631   series = {Proc. SPIE Electronic Imaging 2000 Conf.},
    3632   year = {2000},
    3633   title = {Improving resolution to reduce aliasing in an undersampled image sequence},
    3634   booktitle = {Sensors and Camera Systems for Sensors and Camera Systems for Scientific, Industrial, and Digital Photography Applications},
    3635   pages = {2134--222},
    3636   editor = {Blouke, M. M. and Williams, G.M. and Sampat, N. and Yeh, T.},
    3637   volume = {3965},
    3638   address = {San Jose},
    3639   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    3640 }
    3641 @inproceedings{Luengo2003,
    3642   series = {Lecture Notes on Computer Science},
    3643   year = {2003},
    3644   title = {Basic Morphological Operations, Band-Limited Images and Sampling},
    3645   booktitle = {Scale Space Methods in Computer Vision, Proceedings of the Fourth International Conference, Scale-Space 2003},
    3646   pages = {313-324},
    3647   editor = {Griffin, L.D. and Lillholm, M.},
    3648   volume = {2695},
    3649   address = {Berlin},
    3650   publisher = {Springer-Verlag},
    3651   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    3652 }
    3653 @article{Rivetti1996,
    3654   year = {1996},
    3655   title = {Scanning Force Microscopy of {DNA} Deposited onto Mica: Equilibration versus Kinetic Trapping Studied by Statistical Polymer Chain Analysis},
    3656   pages = {919-932},
    3657   journal = {Journal of Molecular Biology},
    3658   volume = {264},
    3659   author = {Rivetti, C. and Guthold, M. and Bustamante, C.}
    3660 }
    3661 @article{Kroustrup1988,
    3662   month = {February},
    3663   year = {1988},
    3664   title = {Stereological Analysis of Three-Dimensional Structure Organization of Surfaces in Multiphase Specimens: Statistical Methods and Model-Inferences},
    3665   pages = {135--152},
    3666   journal = {Journal of Microscopy},
    3667   volume = {149, Pt 2},
    3668   author = {Kroustrup, J.P. and Gundersen, H.J.G. and V,h, M.}
    3669 }
    3670 @article{Saxl1993,
    3671   month = {April},
    3672   year = {1993},
    3673   title = {Contact Distances and Random Free Paths},
    3674   pages = {53--64},
    3675   journal = {Journal of Microscopy},
    3676   volume = {170, Pt 1},
    3677   author = {Saxl, I.}
    3678 }
    3679 @article{Hildreth1984,
    3680   year = {1984},
    3681   title = {The computation of the velocity field},
    3682   pages = {189-220},
    3683   journal = {Proceedings of the Royal Society of London B},
    3684   volume = {221},
    3685   author = {Hildreth, E.C.}
    3686 }
    3687 @article{Summerscales2001,
    3688   month = {February},
    3689   year = {2001},
    3690   title = {Voronoi Cells, Fractal Dimensions and Fibre Composites},
    3691   pages = {153--162},
    3692   journal = {Journal of Microscopy},
    3693   volume = {201, Pt 2},
    3694   author = {Summerscales, J. and Guild, F.J. and Pearce, N.R.L. and Russell, P.M.}
    3695 }
    3696 @article{Ruiz2003,
    3697   year = {2003},
    3698   title = {The 10.8- structure of Saccharomyces cerevisiae phosphofructokinase determined by cryoelectron microscopy: localization of putative fructose 6-phosphate binding sites},
    3699   pages = {124-134},
    3700   journal = {Journal of Structural Biology},
    3701   volume = {143},
    3702   author = {Ruiz, T. and {Koppenschl\"ager}, G. and Radermacher, M.}
    3703 }
    3704 @article{Lagerholm2006,
    3705   number = {10},
    3706   year = {2006},
    3707   title = {Analysis method for measuring submicroscopic distances with blinking Quantum Dots},
    3708   pages = {3050-3060},
    3709   journal = {Biophysical Journal},
    3710   volume = {91},
    3711   author = {Lagerholm, B.C. and Averett, L. and Weinreb, G.E. and Jacobson, K. and Thompson, N.L.}
    3712 }
    3713 @article{Berney2003,
    3714   number = {6},
    3715   year = {2003},
    3716   title = {{FRET} or no {FRET}: A Quantitative Comparison},
    3717   pages = {3992-4010},
    3718   journal = {Biophysical Journal},
    3719   volume = {84},
    3720   author = {Berney, C. and Danuser, G.}
    3721 }
    3722 @article{Harrigan1984,
    3723   year = {1984},
    3724   title = {Characterization of Microstructural Anisotropy in Orthotropic Materials Using a Second Rank Tensor},
    3725   pages = {761--767},
    3726   journal = {Journal of Materials Science},
    3727   volume = {19},
    3728   author = {Harrigan, T.P. and Mann, R.W.}
    3729 }
    3730 @article{Mironov2003,
    3731   year = {2003},
    3732   title = {{ER-to-Golgi} Carriers Arise through Direct En Bloc Protrusion and Multistage Maturation of Specialized {ER} Exit Domains},
    3733   pages = {583-594},
    3734   journal = {Developmental Cell},
    3735   volume = {5},
    3736   author = {Mironov, A.A. and Mironov, A.A.Jr. and Beznoussekno, G.V. and Trucco, A. and Lupetti, P. and Smith, J.D. and Geerts, W.J.C. and Koster, A.J. and Burger, K.N.J. and Martone, M.E. and Deerinck, T.J. and Ellisman, M.H. and Luini, A.}
    3737 }
    3738 @book{Frankel1997,
    3739   year = {1997},
    3740   title = {The Geometry of Physics},
    3741   address = {Cambridge},
    3742   publisher = {Cambridge University Press},
    3743   author = {T. Frankel}
    3744 }
    3745 @article{Shaner2005,
    3746   year = {2005},
    3747   title = {A guide to choosing fluorescent proteins},
    3748   pages = {905-909},
    3749   journal = {Nature Methods},
    3750   volume = {2},
    3751   author = {Shaner, N.C. and Steinbach, P.A. and Tsien, R.Y.}
    3752 }
    3753 @inproceedings{Lozier1994,
    3754   series = {Proceedings of Symposia in Applied Mathematics},
    3755   month = {December},
    3756   year = {1994},
    3757   title = {Numerical Evaluation of Special Functions},
    3758   booktitle = {Mathematics of Computation 1943--1993: A Half-Century of Computational Mathematics},
    3759   pages = {79--125},
    3760   note = {{\tt http://math.nist.gov/nesf/}},
    3761   editor = {Gautschi, W.},
    3762   volume = {48},
    3763   author = {Lozier, D.W. and Olver, F.W.J.},
    3764   organization = {American Mathematical Society}
    3765 }
    3766 @inbook{Simmonds1982a,
    3767   year = {1982},
    3768   title = {A Brief on Tensor Analysis},
    3769   chapter = {1,2},
    3770   publisher = {Spring-Verlag},
    3771   author = {Simmonds, J.G.}
    3772 }
    3773 @article{Schoenle2002,
    3774   number = {10},
    3775   year = {2002},
    3776   title = {Calculation of vectorial three-dimensional transfer functions in large angle focusing systems},
    3777   pages = {2121-2126},
    3778   journal = {Journal of the Optical Society of America A},
    3779   volume = {19},
    3780   author = {{Sch\"onle}, A. and Hell, S.W.}
    3781 }
    3782 @phdthesis{Kempen1999a,
    3783   year = {1999},
    3784   title = {Image Restoration in Fluorescence Microscopy},
    3785   address = {Delft, The Netherlands},
    3786   school = {Delft University of Technology},
    3787   author = {Kempen, G.M.P. van}
    3788 }
    3789 @article{Min1995,
    3790   year = {1995},
    3791   title = {Comparison of three-dimensional imaging properties between two-photon and single-photon fluorescence microscopy},
    3792   pages = {128--137},
    3793   journal = {Journal of Microscopy},
    3794   volume = {177},
    3795   author = {Min, G. and Sheppard, C.J.R.}
    3796 }
    3797 @article{Min1990,
    3798   year = {1990},
    3799   title = {Image formation in two-photon fluorescence microscopy},
    3800   pages = {104--106},
    3801   journal = {Optik},
    3802   volume = {86},
    3803   author = {Min, G. and Sheppard, C.J.R.}
    3804 }
    3805 @phdthesis{Karlholm1998,
    3806   year = {1998},
    3807   title = {Local Signal Models for Image Sequence Analysis},
    3808   address = {{Link\"oping}, Sweden},
    3809   school = {{Link\"oping} University},
    3810   author = {Karlholm, J.}
    3811 }
    3812 @article{Kimoto2005,
    3813   year = {2005},
    3814   title = {Advantages of a monochromator for bandgap measurements using electron energy-loss spectroscopy},
    3815   pages = {185-189},
    3816   journal = {Micron},
    3817   volume = {36},
    3818   author = {Kimoto, K. and Kothleitner, G. and Grogger, W. and Matsui, Y. and Hofer, F.}
    3819 }
    3820 @book{Mallat2001,
    3821   edition = {2nd edition},
    3822   year = {1999},
    3823   title = {A wavelet tour of signal processing},
    3824   address = {New York},
    3825   publisher = {John Wiley \& Sons},
    3826   author = {Mallat, S.G.}
    3827 }
    3828 @book{Walter1994,
    3829   edition = {3},
    3830   year = {1994},
    3831   title = {{Einf\"uhrung in die Theorie der Distributionen}},
    3832   publisher = {Spektrum Akademischer Verlag},
    3833   author = {Walter, W.}
    3834 }
    3835 @misc{GinkelWWWqqnvphbv2001,
    3836   title = {http://www.ph.tn.tudelft.nl/\char126michael/qqnvphnv.html},
    3837   key = {ZZZZ}
    3838 }
    3839 @article{Cucchiara1998,
    3840   number = {7},
    3841   month = {July},
    3842   year = {1998},
    3843   title = {The Vector-Gradient Hough Transform},
    3844   pages = {746--750},
    3845   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    3846   volume = {20},
    3847   annote = {key_radon},
    3848   author = {Cucchiara, R. and Filicori, F.}
    3849 }
    3850 @inproceedings{Mullikien1994,
    3851   month = {February 9-10},
    3852   year = {1994},
    3853   title = {Methods for {CCD} camera characterization},
    3854   booktitle = {SPIE Proceedings},
    3855   pages = {73-84},
    3856   editor = {Titus, H.C. and Waks, A.},
    3857   volume = {2173},
    3858   address = {San Jose, CA},
    3859   author = {Mullikien, J.C. and Vliet, L.J. van and Netten, H. and Boddeke, F.R. and Feltz, G.W. van der and Young, I.T.}
    3860 }
    3861 @techreport{Verbeek1982,
    3862   year = {1982},
    3863   title = {Space Invariant Image Operations Constructed from Local Direction Detection and Shift Invariant Filters},
    3864   address = {Pattern Recognition Group},
    3865   institution = {Delft University of Technology},
    3866   author = {Verbeek, P.W.}
    3867 }
    3868 @inproceedings{Verbeek1986,
    3869   year = {1986},
    3870   title = {Collision Avoidance and Path Finding through Constrained Distance Transformation in Robot State Space},
    3871   booktitle = {Preprints Intelligent Autonomous Systems (Amsterdam, December 8-11)},
    3872   pages = {634--641},
    3873   author = {Verbeek, P.W. and Dorst, L. and Verwer, B.J.H. and Groen, F.C.A.}
    3874 }
    3875 @article{Verbeek1985,
    3876   year = {1985},
    3877   title = {A Class of Sampling-error Free Measures in Oversampled Band-Limited Images},
    3878   pages = {287--292},
    3879   journal = {Pattern Recognition Letters},
    3880   volume = {3},
    3881   author = {Verbeek, P.W.}
    3882 }
    3883 @article{Verbeek1988,
    3884   number = {3},
    3885   year = {1988},
    3886   title = {Low-level Image Processing by Max-Min Filters},
    3887   pages = {249--258},
    3888   journal = {Signal Processing},
    3889   volume = {15},
    3890   author = {Verbeek, P.W. and Vrooman, H.A. and Vliet, L.J. van}
    3891 }
    3892 @techreport{Verbeek2000,
    3893   year = {2000},
    3894   title = {Subspaces of Generalised Projection Operators},
    3895   address = {Pattern Recognition Group},
    3896   institution = {Delft University of Technology},
    3897   author = {Verbeek, P.W.}
    3898 }
    3899 @inproceedings{Verbeek2003,
    3900   series = {LNCS 2756},
    3901   month = {August 25-27},
    3902   year = {2003},
    3903   title = {The {D}-dimensional inverse vector-gradient operator and its application for scale free image enhancement},
    3904   booktitle = {10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands) },
    3905   pages = {738-745},
    3906   editor = {Petkov, N. and Westenberg, M.A.},
    3907   address = {Berlin},
    3908   publisher = {Springer},
    3909   author = {Verbeek, P.W. and Dijk, J.}
    3910 }
    3911 @article{Verbeek1989,
    3912   year = {1989},
    3913   title = {{2-D} Adaptive Smoothing by {3-D} Distance Transformation},
    3914   pages = {53--65},
    3915   journal = {Pattern Recognition Letters},
    3916   volume = {9},
    3917   author = {Verbeek, P.W. and Verwer, B.J.H.}
    3918 }
    3919 @article{Manders1996,
    3920   number = {1},
    3921   year = {1996},
    3922   title = {Largest contour segmentation: A tool for the localization of spots in confocal images},
    3923   pages = {15-21},
    3924   journal = {Cytometry Part A},
    3925   volume = {23},
    3926   author = {Manders, E.M.M. and Hoebe, R. and Strackee, J. and Vossepoel, A.M. and Aten, J.A.}
    3927 }
    3928 @phdthesis{Boomgaard1992,
    3929   year = {1992},
    3930   title = {Mathematical Morphology: Extensions Towards Computer Vision},
    3931   address = {Amsterdam},
    3932   school = {University of Amsterdam},
    3933   author = {Boomgaard, R. van den}
    3934 }
    3935 @article{Boomgaard1999,
    3936   year = {1999},
    3937   title = {Affine invariant deformation curves a tool for shape characterization},
    3938   pages = {375--380},
    3939   journal = {Image and Vision Computing},
    3940   volume = {17},
    3941   author = {Boomgaard, R. van den}
    3942 }
    3943 @article{Bos1992,
    3944   number = {1},
    3945   year = {1992},
    3946   title = {Ultimate resolution: a mathematical framework},
    3947   pages = {298-306},
    3948   journal = {Ultramicroscopy},
    3949   volume = {47},
    3950   author = {Bos, A. van den}
    3951 }
    3952 @article{Boomgaard1994,
    3953   number = {11},
    3954   year = {1994},
    3955   title = {The morphological structure of images: The differential equations of morphological scale-space},
    3956   pages = {1101--1113},
    3957   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3958   volume = {16},
    3959   author = {Boomgaard, R. van den and Smeulders, A.}
    3960 }
    3961 @article{Manders1993,
    3962   number = {3},
    3963   year = {1993},
    3964   title = {Measurement of co-localization of objects in dual-colour confocal images},
    3965   pages = {375-382},
    3966   journal = {Journal of Microscopy},
    3967   volume = {169},
    3968   author = {Manders, E.M.M. and Verbeek, F.J. and Aten, J.A.}
    3969 }
    3970 @misc{Dijkstra1982,
    3971   month = {August 11},
    3972   year = {1982},
    3973   title = {Why Numbering Should Start at Zero},
    3974   howpublished = {PDF file},
    3975   author = {Dijkstra, E.W.}
    3976 }
    3977 @misc{DelftXXXX,
    3978   title = {Magische Vierkanten},
    3979   howpublished = {uit ``Spelen met Puzzels''},
    3980   author = {Delft, P. van and Botermans,J.}
    3981 }
    3982 @article{Mayall1990,
    3983   number = {1},
    3984   year = {1990},
    3985   title = {Experience with the {Athena} Semi-Automated Karyotyping System},
    3986   pages = {59--72},
    3987   journal = {Cytometry},
    3988   volume = {11},
    3989   author = {Mayall, B.H. and Tucker, J.D. and Christensen, M.L. and Vliet, L.J. van and Young, I.T.}
    3990 }
    3991 @article{Schoenberg1930,
    3992   year = {1930},
    3993   title = {{\"Uber} Variationsvermindernde Lineare Transformationen},
    3994   pages = {321--328},
    3995   journal = {Mathematische Zeitschrift},
    3996   volume = {32},
    3997   author = {Schoenberg, I.}
    3998 }
    3999 @book{Rade1999,
    4000   edition = {4th},
    4001   year = {1999},
    4002   title = {Mathematical Handbook for Science and Engineering},
    4003   publisher = {Springer Verlag},
    4004   author = {{R\aa de}, L. and Westergren, B.}
    4005 }
    4006 @article{Blostein1989,
    4007   number = {12},
    4008   month = {December},
    4009   year = {1989},
    4010   title = {Shape from Texture: Integrating Texture-Element Extraction and Surface Estimation},
    4011   pages = {1233--1251},
    4012   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4013   volume = {11},
    4014   author = {Blostein, D. and Ahuja, N.}
    4015 }
    4016 @inproceedings{Hartley1992,
    4017   month = {15--18 June},
    4018   year = {1992},
    4019   title = {Stereo from Uncalibrated Cameras},
    4020   booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition - CVPR'92},
    4021   pages = {761--764},
    4022   address = {Urbana-Champaign, USA},
    4023   author = {Hartley, R. and Gupta, R. and Chang, T.}
    4024 }
    4025 @article{Patwardhan2002,
    4026   number = {1},
    4027   year = {2002},
    4028   title = {Coherent, non-planar illumination of a defocused specimen: consequences for transmission electron microscopy},
    4029   pages = {4-12},
    4030   journal = {Optik},
    4031   volume = {13},
    4032   author = {Patwardhan, A.}
    4033 }
    4034 @article{Kybic2002a,
    4035   number = {8},
    4036   year = {2002},
    4037   title = {Generalized sampling: A variational approach - Part {II}: Applications},
    4038   pages = {1977--1985},
    4039   journal = {IEEE Transactions on Signal Processing},
    4040   volume = {50},
    4041   author = {Kybic, J. and Blu, T. and Unser, M.}
    4042 }
    4043 @inproceedings{Cooper2003,
    4044   series = {LNCS 2749},
    4045   month = {June 29 -July 2},
    4046   year = {2003},
    4047   title = {Estimating Motion in Ultrasound Images of the Small Bowel: Optical Flow without Image Structure},
    4048   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    4049   pages = {571-578},
    4050   editor = {{Big\"un}, J. and Gustavsson, T.},
    4051   address = {Berlin},
    4052   publisher = {Springer-Verlag},
    4053   author = {Cooper, D.H. and Madsen, B.R. and Graham, J.}
    4054 }
    4055 @article{Weijer2001,
    4056   number = {9},
    4057   year = {2001},
    4058   title = {Curvature estimation in oriented patterns using curvilinear models applied to gradient vector fields},
    4059   pages = {1035 -1042},
    4060   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4061   volume = {23},
    4062   author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van}
    4063 }
    4064 @article{Weijer2005,
    4065   number = {4},
    4066   year = {2005},
    4067   title = {Edge and Corner Detection by Photometric Quasi-Invariants},
    4068   pages = {625-630},
    4069   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4070   volume = {27},
    4071   author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van }
    4072 }
    4073 @article{Unsalan2001,
    4074   number = {1},
    4075   year = {2001},
    4076   title = {Conversions between Parametric and Implicit Forms Using Polar/Spherical Coordinate Representations},
    4077   pages = {1--25},
    4078   journal = {Computer Vision and Image Understanding},
    4079   volume = {81},
    4080   author = {{\"Unsalan}, C. and {Er\c{c}il}, A.}
    4081 }
    4082 @article{Aguado2000a,
    4083   number = {1995},
    4084   year = {2000},
    4085   title = {On the Intimate Relationship between the Principle of Duality and the {Hough} Transform},
    4086   pages = {503--526},
    4087   journal = {Proceedings of the Royal Society London A},
    4088   volume = {456},
    4089   author = {Aguado, A.S. and Montiel, E. and Nixon, M.S.}
    4090 }
    4091 @article{Unser1999,
    4092   month = {November},
    4093   year = {1999},
    4094   title = {Splines: A Perfect Fit for Signal and Image Processing},
    4095   pages = {22--38},
    4096   journal = {IEEE Signal Processing Magazine},
    4097   author = {Unser, Michael}
    4098 }
    4099 @article{Haussecker2001,
    4100   number = {6},
    4101   month = {June},
    4102   year = {2001},
    4103   title = {Computing Optical Flow with Physical Models of Brightness Variation},
    4104   pages = {661--673},
    4105   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4106   volume = {23},
    4107   author = {Haussecker, H.W. and Fleet, D.J.}
    4108 }
    4109 @article{Unser1995,
    4110   number = {10},
    4111   year = {1995},
    4112   title = {Convolution-based interpolation for fast, high-quality rotation of images},
    4113   pages = {1371-1381},
    4114   journal = {IEEE Transactions on Image Processing},
    4115   volume = {4},
    4116   author = {Unser, M. and Thevenaz, P. and Yaroslavsky, L.}
    4117 }
    4118 @article{Duncan1991,
    4119   number = {3},
    4120   year = {1991},
    4121   title = {A bending energy model for measurement of cardiac shape deformaty},
    4122   pages = {307--319},
    4123   journal = {IEEE Transactions on Medical Imaging},
    4124   volume = {10},
    4125   author = {Duncan, J.S. and Lee, F.A. and Smeulders, A.W.M. and Zaret, B.L.}
    4126 }
    4127 @article{Unser1991,
    4128   number = {3},
    4129   month = {March},
    4130   year = {1991},
    4131   title = {Fast {B}-Spline Transform for Continuous Image Representation and Interpolation},
    4132   pages = {277--285},
    4133   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4134   volume = {13},
    4135   author = {Unser, M. and Aldroubi, A. and Eden, M.}
    4136 }
    4137 @article{Whitaker1993,
    4138   number = {1},
    4139   month = {January},
    4140   year = {1993},
    4141   title = {A Multi-Scale Approach to Nonuniform Diffusion},
    4142   pages = {99--110},
    4143   journal = {CVGIP Image Understanding},
    4144   volume = {57},
    4145   author = {Whitaker, R.T. and Pizer, S.M.}
    4146 }
    4147 @article{Unser1993,
    4148   number = {2},
    4149   month = {February},
    4150   year = {1993},
    4151   title = {{B}-Spline Signal Processing: Part {I} - Theory},
    4152   pages = {821--833},
    4153   journal = {IEEE Transactions on Signal Processing},
    4154   volume = {41},
    4155   author = {Unser, Michael and Aldroubi, Akram and Eden, Murray}
    4156 }
    4157 @article{Vries2004,
    4158   number = {4},
    4159   year = {2004},
    4160   title = {Patterned Electroplating of Micrometer Scale Magnetic Structures on Glass Substrates},
    4161   pages = {391-395},
    4162   journal = {Journal of Microelectromechanical Systems},
    4163   volume = {13},
    4164   author = {Vries, A.H.B. de and Kanger, J.S. and Krenn, B.E. and Driel, R. van}
    4165 }
    4166 @article{Vries2005,
    4167   number = {3},
    4168   year = {2005},
    4169   title = {Micro Magnetic Tweezers for Nanomanipulation Inside Live Cells},
    4170   pages = {2137-2144},
    4171   journal = {Biophysical Journal},
    4172   volume = {88},
    4173   author = {Vries, A.H.B. de and Krenn, B.E. and Driel, R. van and Kanger, J.S.}
    4174 }
    4175 @article{Weijer2001kort,
    4176   number = {9},
    4177   year = {2001},
    4178   title = {Curvature estimation in oriented patterns using curvilinear models applied to gradient vector fields },
    4179   pages = {1035--1042},
    4180   journal = {PAMI},
    4181   volume = {23},
    4182   author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van }
    4183 }
    4184 @misc{DIPlib,
    4185   year = {1995-},
    4186   title = {{DIPlib}: a scientific image processing library},
    4187   note = {Pattern Recognition Group, Department of Applied Physics, Delft University of Technology, {\tt http://www.qi.tnw.tudelft.nl/DIPlib}},
    4188   author = {Ginkel, M. van and Kempen, G.M.P. van and Luengo Hendriks, C.L. and Rieger, B. and Vliet, L.J. van}
    4189 }
    4190 @article{Michielsen2000,
    4191   year = {2000},
    4192   title = {Morphological Image Analysis},
    4193   pages = {94--103},
    4194   journal = {Computer Physics Communications},
    4195   volume = {132},
    4196   author = {Michielsen, K. and De Raedt, H.}
    4197 }
    4198 @article{Heertje1997,
    4199   number = {2},
    4200   year = {1997},
    4201   title = {Vet Zonder Vet},
    4202   pages = {30--40},
    4203   journal = {Natuur en Techniek},
    4204   volume = {65},
    4205   author = {Heertje, I.}
    4206 }
    4207 @inproceedings{Tomasi1998a,
    4208   month = {January 4-7},
    4209   year = {1988},
    4210   title = {Bilateral Filtering for Gray and Color Images},
    4211   booktitle = { Proceedings of the Sixth International Conference on Computer Vision, ICCV'98 (Bombay, India)},
    4212   pages = {836-846},
    4213   publisher = {Narosa Publishing House},
    4214   author = {Tomasi, C. and Manduchi, R.}
    4215 }
    4216 @book{Jain1989,
    4217   year = {1989},
    4218   title = {Fundamentals of Digital Image Processing},
    4219   publisher = {Prentice-Hall},
    4220   author = {Jain, A.K.}
    4221 }
    4222 @article{Thompson2002,
    4223   year = {2002},
    4224   title = {Precise Nanometer Localization Analysis for Individual Fluorescent Probes},
    4225   pages = {2775-2783},
    4226   journal = {Biophysical Journal},
    4227   volume = {82},
    4228   author = {Thompson, R.E. and Larson, D.R. and Webb, W.W.}
    4229 }
    4230 @techreport{Pizer1990,
    4231   year = {1990},
    4232   title = {Toward Interactive Object Definition in 3D Scalar Images},
    4233   note = {TR90-034},
    4234   institution = {University of North Carolina, U.S.A.},
    4235   author = {Pizer, S.M. and Cullip, T.J. and Fredericksen, R.E.}
    4236 }
    4237 @article{Taton2001,
    4238   year = {2001},
    4239   title = {Two-color labeling of oligonucleotide arrays via size-selctive scattering of nanoparticles},
    4240   pages = {5164-5165},
    4241   journal = {Journal of the American Chemical Society},
    4242   volume = {123},
    4243   author = {Taton, T.A. and Mirkin, C.A. and Lestinger, R.L.}
    4244 }
    4245 @article{Orr1993,
    4246   number = {1},
    4247   month = {January},
    4248   year = {1993},
    4249   title = {The Order of Computation for Finite Discrete Gabor Transforms},
    4250   pages = {122--130},
    4251   journal = {IEEE Transactions on Signal Processing},
    4252   volume = {41},
    4253   author = {Orr, R.S.}
    4254 }
    4255 @article{Marfurt1998,
    4256   number = {4},
    4257   month = {July-August},
    4258   year = {1998},
    4259   title = {3-D Seismic Attributes using a Semblance-based coherency algorithm},
    4260   pages = {1150--1165},
    4261   journal = {Geophysics},
    4262   volume = {63},
    4263   author = {Marfurt, K.J. and Kirlin, R.L. and Farmer, S.L. and Bahorich, M.S.}
    4264 }
    4265 @inproceedings{Witkin1983,
    4266   month = {October},
    4267   year = {1983},
    4268   title = {Scale Space Filtering},
    4269   booktitle = {Proceedings of the International Conference on Artificial Intelligence},
    4270   pages = {1019--1023},
    4271   address = {Karlsruhe, Germany},
    4272   author = {Witkin, A.}
    4273 }
    4274 @article{Doel2001,
    4275   number = {25},
    4276   year = {2001},
    4277   title = {Temporal phase unwrapping algorithm for dynamic interference pattern analysis in interference-contrast microscopy},
    4278   pages = {4487--4500},
    4279   journal = {Applied Optics},
    4280   volume = {40},
    4281   author = {Doel, L.R. van den and Vliet, L.J. van}
    4282 }
    4283 @inproceedings{Zucker1999,
    4284   month = {June 7-11},
    4285   year = {1999},
    4286   title = {Complexity and Confusion in Computational Vision},
    4287   booktitle = {SCIA'99 the 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland)},
    4288   pages = {1--10},
    4289   author = {Zucker, S.W.}
    4290 }
    4291 @article{HelOr1998,
    4292   year = {1998},
    4293   title = {Canonical Decomposition of Steerable Functions},
    4294   pages = {83--95},
    4295   journal = {Journal of Mathematical Imaging and Vision},
    4296   volume = {9},
    4297   author = {Hel-Or, Y. and Teo, P.C.}
    4298 }
    4299 @phdthesis{Doel2002,
    4300   year = {2002},
    4301   title = {Quantitative Microscopic Techniques for Monitoring Dynamic Processes in Microarrays},
    4302   address = {Delft, The Netherlands},
    4303   school = {Delft University of Technology},
    4304   author = {Doel, L.R. van den}
    4305 }
    4306 @article{Fredrich1997,
    4307   number = {3-4},
    4308   year = {1997},
    4309   title = {Statistical Characterization of the Three-dimensional Microgeometry of Porous Media and Correlation with Macroscopic Transport Properties},
    4310   pages = {Paper No. 85},
    4311   journal = {Int. J. Roch Mech. \& Min. Sci.},
    4312   volume = {34},
    4313   author = {Fredrich, J.T. and Lindquist, W.B.}
    4314 }
    4315 @article{Fredrich1999,
    4316   number = {7},
    4317   year = {1999},
    4318   title = {3D Imaging of Porous Media using Laser Scanning Confocal Microscopy with Application to Microscale Transport Processes},
    4319   pages = {551--561},
    4320   journal = {Physics and Chemistry of the Earth (A)},
    4321   volume = {24},
    4322   author = {Fredrich, J.T.}
    4323 }
    4324 @book{Duda2001,
    4325   edition = {second},
    4326   year = {2001},
    4327   title = {Pattern Classification},
    4328   publisher = {John Wiley \& Sons},
    4329   author = {Duda, R.O. and Hart, P.E. and Stork, D.G.}
    4330 }
    4331 @article{Fredrich1995,
    4332   month = {April},
    4333   year = {1995},
    4334   title = {Imaging the Pore Structure of Geomaterials},
    4335   pages = {276--279},
    4336   journal = {Science},
    4337   volume = {268},
    4338   author = {Fredrich, J.T. and {Men\'endez}, B. and Wong, T.F.}
    4339 }
    4340 @article{Whitehouse1974a,
    4341   year = {1974},
    4342   title = {Scanning Electron Microscope Studies of Trabecular Bone in the Proximal End of the Human Femur},
    4343   pages = {417--444},
    4344   journal = {J. Anatomy},
    4345   volume = {118},
    4346   author = {Whitehouse, W.J. and Dyson, E.D.}
    4347 }
    4348 @inproceedings{Beucher1982,
    4349   year = {1982},
    4350   title = {Watersheds of Functions and Picture Segmentation},
    4351   booktitle = {IEEE International Conference on Acoustics, Speech, and Signal Processing},
    4352   pages = {1928-1931},
    4353   author = {Beucher, S.}
    4354 }
    4355 @article{Booth2000,
    4356   number = {1},
    4357   year = {2000},
    4358   title = {Strategies for the compensation of specimen-induced spherical aberration in confocal microscopy of skin},
    4359   pages = {68-74},
    4360   journal = {Journal of Microscopy},
    4361   volume = {200},
    4362   author = {Booth, M.J. and Wilson, T.}
    4363 }
    4364 @article{Redon1998,
    4365   month = {September},
    4366   year = {1998},
    4367   title = {Assessment of Fibre Orientation in Reinforced Concrete using {Fourier} Image Transform},
    4368   pages = {258--265},
    4369   journal = {Journal of Microscopy},
    4370   volume = {191 Pt 3},
    4371   author = {Redon, C. and Chermant, L. and Chermant, J.-L. and Coster, M.}
    4372 }
    4373 @article{Booth2004,
    4374   year = {2004},
    4375   title = {A 9 single particle reconstruction from {CCD} captured images on a 200 {kV} electron cryomicroscope},
    4376   pages = {116-127},
    4377   journal = {Journal of Structural Biology},
    4378   volume = {147},
    4379   author = {Booth, C.R. and Jiang, W. and Baker, M.L. and Zhou, Z.H. and Ludtke, S.J. and Chiu, W.}
    4380 }
    4381 @article{Booth2002,
    4382   number = {9},
    4383   year = {2002},
    4384   title = {Adaptive aberration correction in a confocal microscope},
    4385   pages = {5788-5792},
    4386   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    4387   volume = {99},
    4388   author = {Booth, M.J. and Neil, M.A.A. and Juskaitis, R. and Wilson, T.}
    4389 }
    4390 @article{Jakobsen2000,
    4391   number = {6},
    4392   month = {November/December},
    4393   year = {2000},
    4394   title = {Anisotropic approximations for mudrocks: a seismic laboratory study},
    4395   pages = {1711--1725},
    4396   journal = {Geophysics},
    4397   volume = {65},
    4398   author = {Jakobsen, M. and Johansen, T.A.}
    4399 }
    4400 @article{Kiryati1991a,
    4401   number = {6},
    4402   month = {June},
    4403   year = {1991},
    4404   title = {On Navigating between Friends and Foes},
    4405   pages = {602--606},
    4406   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4407   volume = {13},
    4408   annote = {key_radon},
    4409   author = {Kiryati, N. and Bruckstein, A.M.}
    4410 }
    4411 @article{Gustafsson1999,
    4412   number = {1},
    4413   year = {1999},
    4414   title = {{I$^5$M}: {3D} widefield light microscopy with better than 100 nm axial resolution},
    4415   pages = {10-16},
    4416   journal = {Journal of Microscopy},
    4417   volume = {195},
    4418   author = {Gustafsson, M.G.L. and Agard, D.A. and Sedat, J.W.}
    4419 }
    4420 @book{Lovell1999,
    4421   year = {1999},
    4422   title = {Borehole imaging: Applications and case histories, Geological Society special publication, no. 159},
    4423   publisher = {Geological Society, London},
    4424   author = {Lovell, M. and Williamson, G. and Harvey, P.}
    4425 }
    4426 @article{Faydi2001a,
    4427   year = {2001},
    4428   title = {Experimental Study and Modeling of the Ice Crystal Morphology of Model Standard Ice Cream. Part {II}: Heat Transfer Data and Texture Modeling},
    4429   pages = {293--300},
    4430   journal = {Journal of Food Engineering},
    4431   volume = {48},
    4432   author = {Faydi, E. and Andrieu, J. and Laurent, P. and Peczalski, R.}
    4433 }
    4434 @article{Kitchen1982,
    4435   number = {2},
    4436   year = {1982},
    4437   title = {Gray-Level Corner Detection},
    4438   pages = {95--102},
    4439   journal = {Pattern Recognition Letters},
    4440   volume = {1},
    4441   author = {Kitchen, L. and Rosenfeld, A.}
    4442 }
    4443 @inbook{Digabel1978,
    4444   year = {1978},
    4445   title = {Quantitative Analysis of Microstructures in Materials Sciences, Biology and Medicine},
    4446   pages = {85-99},
    4447   editor = {Chermant, J. L.},
    4448   address = {Stuttgart},
    4449   chapter = {Iterative Algorithms},
    4450   publisher = {Dr. Rieder-Verlag},
    4451   author = {Digabel, H. and {Lantu\'ejoul}, C.}
    4452 }
    4453 @article{Leung2000,
    4454   number = {12},
    4455   month = {December},
    4456   year = {2000},
    4457   title = {Clustering by Scale-space Filtering},
    4458   pages = {1396--1410},
    4459   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4460   volume = {22},
    4461   author = {Leung, Y. and Zhang, J.S. and Xu, Z.B.}
    4462 }
    4463 @article{Tomasi1998,
    4464   number = {3},
    4465   month = {March},
    4466   year = {1998},
    4467   title = {Stereo Matching as a Nearest-Neighbor Problem},
    4468   pages = {333--340},
    4469   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4470   volume = {20},
    4471   author = {Tomasi, C. and Manduchi, R.}
    4472 }
    4473 @article{Shi1996,
    4474   number = {2},
    4475   year = {1996},
    4476   title = {Statistical mechanics of the extensible and shearable elastic rod and of {DNA}},
    4477   pages = {714-731},
    4478   journal = {The Journal of Chemical Physics},
    4479   volume = {105},
    4480   author = {Shi, Y. and He, S. and Hearst, J.E.}
    4481 }
    4482 @article{Schwertner2004,
    4483   number = {26},
    4484   year = {2004},
    4485   title = {Characterizing specimen induced aberrations for high NA adaptive optical microscopy},
    4486   pages = {6540-6552},
    4487   journal = {Optics Express},
    4488   volume = {12},
    4489   author = {Schwertner, M. and Booth, M.J. and Wilson, T.}
    4490 }
    4491 @article{Ville1948,
    4492   number = {1},
    4493   year = {1948},
    4494   title = {{Th\'eorie} et Applications de la Notion de Signal Analytique},
    4495   pages = {61--74},
    4496   journal = {Cables et Transmission},
    4497   volume = {{2A}},
    4498   author = {Ville, J.}
    4499 }
    4500 @article{Good1958,
    4501   year = {1958},
    4502   title = {The Interaction Algorithm and Practical {Fourier} Analysis},
    4503   pages = {361--372},
    4504   note = {Addendum in vol B. 22, 1960, pp. 372-375},
    4505   journal = {J. Roy. Statist. Soc. Ser. B},
    4506   volume = {B. 20},
    4507   annote = {key_fft},
    4508   author = {Good, I.J.}
    4509 }
    4510 @article{Digman2005a,
    4511   year = {2005},
    4512   title = {Measuring Fast Dynamics in Solutions and Cells with a Laser Scanning Microscope},
    4513   pages = {1317-1327},
    4514   journal = {Biophysical Journal},
    4515   volume = {89},
    4516   author = {Digman, M.A. and Brown, C.M. and Sengupta, P. and Wiseman, P.W. and Howritz, A.R. and Grattown, E.}
    4517 }
    4518 @article{Kiryati1992,
    4519   number = {4},
    4520   month = {April},
    4521   year = {1992},
    4522   title = {What 's in a Set of Points?},
    4523   pages = {496--500},
    4524   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4525   volume = {14},
    4526   annote = {key_radon},
    4527   author = {Kiryati, N. and Bruckstein, A.M.}
    4528 }
    4529 @inbook{Rosenfeld1969_Hough,
    4530   year = {1969},
    4531   title = {Picture Processing by Computer},
    4532   pages = {151--153},
    4533   note = {Section 8.4.e. Coordinate Conversion},
    4534   chapter = {8. Picture Segmentation},
    4535   publisher = {Academic Press},
    4536   author = {Rosenfeld, A.}
    4537 }
    4538 @article{Kiryati1991,
    4539   number = {3},
    4540   month = {May},
    4541   year = {1991},
    4542   title = {Antialiasing the {H}ough transform},
    4543   pages = {213--222},
    4544   journal = {CVGIP: Graphical Models and Image Processing},
    4545   volume = {53},
    4546   annote = {key_radon},
    4547   author = {Kiryati, N. and Bruckstein, A.M.}
    4548 }
    4549 @article{Randen1999,
    4550   number = {4},
    4551   month = {April},
    4552   year = {1999},
    4553   title = {Filtering for Texture Classification: A Comparative Study},
    4554   pages = {291--310},
    4555   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4556   volume = {21},
    4557   author = {Randen, T. and {Hus\oe y}, H.}
    4558 }
    4559 @article{Birk1979,
    4560   number = {2},
    4561   month = {April},
    4562   year = {1979},
    4563   title = {Image Feature Extraction Using Diameter-Limited Gradient Direction Histograms},
    4564   pages = {228--235},
    4565   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4566   volume = {1},
    4567   author = {Birk, J. and Kelley, R. and Chen, N. and Wilson, L.}
    4568 }
    4569 @article{Betzig2006,
    4570   year = {2006},
    4571   title = {Imaging Intracellular Fluorescent Proteins at Nanometer Resolution},
    4572   pages = {1643-1645},
    4573   journal = {Science},
    4574   volume = {313},
    4575   author = {Betzig, E. and Patterson, G.H. and Sougrat, R. and Lindwasser, O.W. and Olenych, S. and Bonifacino, J.S. and Davidson, M.W. and Lippincott-Schwartz, J. and Hess, H.F.}
    4576 }
    4577 @article{Lopez2000,
    4578   year = {2000},
    4579   title = {Multilocal Creaseness Based on the Level-Set Extrinsic Curvature},
    4580   pages = {111--144},
    4581   journal = {Computer Vision and Image Understanding},
    4582   volume = {77},
    4583   author = {{L\'opez}, A.M. and Lloret, D. and Serrat, J. and Villanueva, J.J.}
    4584 }
    4585 @book{Stoker1969,
    4586   year = {1969},
    4587   title = {Differential Geometry},
    4588   publisher = {John Wiley and Sons, Inc},
    4589   author = {Stoker, J.J.}
    4590 }
    4591 @article{Robinson2004a,
    4592   number = {9},
    4593   year = {2004},
    4594   title = {Fundamental performance limits in image registration},
    4595   pages = {1185-1199},
    4596   journal = {IEEE Transactions on Image Processing},
    4597   volume = {13},
    4598   author = {Robinson, M.D. and Milanfar, P.}
    4599 }
    4600 @article{Frontali1988,
    4601   number = {8},
    4602   year = {1988},
    4603   title = {Excluded-volume effect on the bidimensional conformation of {DNA} molecules adsorbed to protein films},
    4604   pages = {1329-1331},
    4605   journal = {Biopolymers},
    4606   volume = {27},
    4607   author = {Frontali, C.}
    4608 }
    4609 @article{Veen1981,
    4610   year = {1981},
    4611   title = {Discretization Error in the {H}ough transform},
    4612   pages = {137--145},
    4613   journal = {Pattern Recognition},
    4614   volume = {14},
    4615   annote = {key_radon},
    4616   author = {Veen, T.M. van and Groen, F.C.A.}
    4617 }
    4618 @article{Eberly1991a,
    4619   number = {6},
    4620   month = {November},
    4621   year = {1991},
    4622   title = {On Gray Scale Image Measurements. {II}. Surface Area and Volume},
    4623   pages = {550--562},
    4624   journal = {CVGIP: Graphical Models and Image Processing},
    4625   volume = {53},
    4626   author = {Eberly, D. and Lancaster, J. and Alyassin, A.}
    4627 }
    4628 @article{Stowell1998,
    4629   year = {1998},
    4630   title = {Macromolecular structure determination by electron microscopy: new advances and recent results},
    4631   pages = {595-600},
    4632   journal = {Current Opinion Structural Biology},
    4633   volume = {8},
    4634   author = {Stowell, M.H.B. and Miyazawa, A. and Unwin, N.}
    4635 }
    4636 @article{Yang1997,
    4637   number = {2},
    4638   month = {March},
    4639   year = {1997},
    4640   title = {Fast Computation of Three-Dimensional Geometric Moments Using a Discrete Divergence Theorem and a Generalization to Higher Dimensions},
    4641   pages = {97--108},
    4642   journal = {Graphical Models and Image Processing},
    4643   volume = {59},
    4644   author = {Yang, L. and Albregtsen, F. and Taxt, T.}
    4645 }
    4646 @article{Jovin2003,
    4647   year = {2003},
    4648   title = {Quantum dots finally come of age},
    4649   pages = {32-33},
    4650   journal = {Nature Biotechnology},
    4651   volume = {21},
    4652   author = {Jovin, T.M.}
    4653 }
    4654 @article{Ioannidis2000,
    4655   year = {2000},
    4656   title = {On the Geometry and Topology of 3D Stochastic Porous Media},
    4657   pages = {323--334},
    4658   journal = {Journal of Colloid and Interface Science},
    4659   volume = {229},
    4660   author = {Ioannidis, M.A. and Chatzis, I.}
    4661 }
    4662 @article{Srinivasa1996,
    4663   number = {8},
    4664   year = {1996},
    4665   title = {A FFT-based technique for translation, rotation and scale-invariant image registration},
    4666   pages = {1266-1271},
    4667   journal = {IEEE Transactions on Image Processing},
    4668   volume = {5},
    4669   author = {Srinivasa Reddy, B. and Chatterji, B.N.}
    4670 }
    4671 @article{Zheng1995,
    4672   year = {1995},
    4673   title = {Automatic feature point extraction and tracking in image sequences for arbitrary camera motion},
    4674   pages = {31--76},
    4675   journal = {International Journal of Computer Vision},
    4676   volume = {15},
    4677   author = {Zheng, Q. and Chellappa, R.}
    4678 }
    4679 @article{Mattfeldt1993,
    4680   month = {August},
    4681   year = {1993},
    4682   title = {Second-order Stereology of Benign and Malignant Alterations of the Human Mammary Gland},
    4683   pages = {143--151},
    4684   journal = {Journal of Microscopy},
    4685   volume = {171, Pr 2},
    4686   author = {Mattfeldt, T. and Frey, H. and Rose, C.}
    4687 }
    4688 @book{Campbell2001a,
    4689   year = {2001},
    4690   title = {Exploring the Nanoworld with {LEGO} bricks},
    4691   editor = {Campbell, D.J.}
    4692 }
    4693 @article{Murk2003,
    4694   number = {23},
    4695   year = {2003},
    4696   title = {Endosomal compartmentalization in three dimensions: Implications for membrane fusion},
    4697   pages = {13332-13337},
    4698   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    4699   volume = {100},
    4700   author = {Murk, J.L.A.N. and Humbel, B.M. and Ziese, U. and Griffith, J.M. and Posthuma, G. and Slot, J.W. and Koster, A.J. and Verkleij, A.J. and Geuze, H.J. and Kleijmeer, M.J.}
    4701 }
    4702 @article{Chiuso2002,
    4703   number = {4},
    4704   year = {2002},
    4705   title = {Structure from motion causally integrated over time},
    4706   pages = {523--535},
    4707   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4708   volume = {24},
    4709   author = {Chiuso, A. and Favaro, P. and Hailin Jin and Soatto, S. }
    4710 }
    4711 @misc{Atherton1993,
    4712   year = {1993},
    4713   title = {Using Phase to Represent Radius in the Coherent Circle {Hough} Transform},
    4714   howpublished = {IEE Colloquium on {Hough} Transforms},
    4715   author = {Atherton, T.J. and Kerbyson, D.J.}
    4716 }
    4717 @article{Lidke2005a,
    4718   year = {2005},
    4719   title = {Reaching out for signals: filopodia sense {EGF} and respond by directed retrograde transport of activated receptors},
    4720   pages = {619-626},
    4721   journal = {Journal of Cell Biology},
    4722   volume = {170},
    4723   author = {Lidke, D.S. and Lidke, K.A. and Rieger, B. and Jovin, T.M. and Arndt-Jovin, D.J.}
    4724 }
    4725 @article{Squire2000,
    4726   number = {3},
    4727   year = {2000},
    4728   title = { Invariant Signatures: Characterizing Contours by their Departures from Invariance},
    4729   pages = {284--316},
    4730   journal = {Computer Vision and Image Understanding},
    4731   volume = {77},
    4732   author = {Squire, D. and Caelli, T.}
    4733 }
    4734 @article{Lidke2005b,
    4735   number = {18},
    4736   year = {2005},
    4737   title = {Superresolution by localization of quantum dots using blinking statistics},
    4738   pages = {7052-7062},
    4739   journal = {Optics Express},
    4740   volume = {13},
    4741   author = {Lidke, K.A. and Rieger, B. and Jovin, T.M. and Heintzmann, R.}
    4742 }
    4743 @article{Rosenfeld1968,
    4744   number = {1},
    4745   month = {july},
    4746   year = {1968},
    4747   title = {Distance functions on digital pictures},
    4748   pages = {33-61},
    4749   journal = {Pattern Recognition},
    4750   volume = {1},
    4751   author = {Rosenfeld, A. and Pfaltz, J.L.}
    4752 }
    4753 @article{Garini1999,
    4754   number = {3},
    4755   year = {1999},
    4756   title = {Signal to Noise Analysis of Multiple Color Fluorescence Imaging Microscopy},
    4757   pages = {214-226},
    4758   journal = {Cytometry},
    4759   volume = {35},
    4760   author = {Garini, Y. and Bar-Am, G.I. and Cabib, D. and Katzir, N.}
    4761 }
    4762 @article{Yuen1997,
    4763   number = {6},
    4764   year = {1997},
    4765   title = {An Investigation of the Nature of Parameterization for the {Hough} Transform},
    4766   pages = {1009--1040},
    4767   journal = {Pattern Recognition},
    4768   volume = {30},
    4769   author = {Yuen, S.Y. and Ma, C.H.}
    4770 }
    4771 @inproceedings{Niessen1994,
    4772   year = {1994},
    4773   title = {Nonlinear Diffusion of Scalar Images using Well-Posed Differential Operators},
    4774   booktitle = {CVPR'94 (Seattle, U.S.A.)},
    4775   pages = {92--97},
    4776   author = {Niessen, W.J. and Haar Romeny, B.M. ter and Florack, L.M.J. and Salden, A.H. and Viergever, M.A.}
    4777 }
    4778 @book{Rosenfeld1969,
    4779   year = {1969},
    4780   title = {Picture Processing by Computer},
    4781   publisher = {Academic Press},
    4782   author = {Rosenfeld, A.}
    4783 }
    4784 @article{Besl1992,
    4785   number = {2},
    4786   year = {1992},
    4787   title = {A method for registration of {3-D} shapes},
    4788   pages = {239-256},
    4789   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4790   volume = {14},
    4791   author = {Besl, P.J. and McKay, N.D.}
    4792 }
    4793 @article{Neher2004a,
    4794   number = {1},
    4795   year = {2004},
    4796   title = {Optimizing imaging parameters for the separation of multiple labels in a fluorescence image},
    4797   pages = {46-62},
    4798   journal = {Journal of Microscopy},
    4799   volume = {213},
    4800   author = {Neher, R.A. and Neher, E.}
    4801 }
    4802 @article{Kempen1997,
    4803   number = {3},
    4804   year = {1997},
    4805   title = {A Quantitative Comparison of Image Restoration Methods for Confocal Microscopy},
    4806   pages = {354--365},
    4807   journal = {Journal of Microscopy},
    4808   volume = {185},
    4809   author = {Kempen, G.M.P. van and Vliet, L.J. van and Verveer, P.J. and Voort, H.T.M. van der}
    4810 }
    4811 @article{Walters1987,
    4812   year = {1987},
    4813   title = {Selection of Image Primitives for General-Purpose Visual Processing},
    4814   pages = {261--298},
    4815   journal = {Computer Vision, Graphics, and Image Processing},
    4816   volume = {37},
    4817   author = {Walters, D.}
    4818 }
    4819 @article{Heintzmann2001,
    4820   year = {2001},
    4821   title = {A dual path programmable array microscope ({PAM}): simultaneous acquisition of conjugate and non-conjugate images},
    4822   pages = {119-135},
    4823   journal = {Journal of Microscopy},
    4824   volume = {204},
    4825   author = {Heintzmann, R. and Hanley, Q.S. and Ardent-Jovin, D.J. and Jovin, T.M.}
    4826 }
    4827 @inproceedings{Kempen1999,
    4828   month = {June 7-11},
    4829   year = {1999},
    4830   title = {The Application of a Local Dimensionality Estimator to the Analysis of 3D Microscopic Network Structures},
    4831   booktitle = {SCIA'99, Proc. 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland)},
    4832   pages = {447--455},
    4833   author = {Kempen, G.M.P. van and Brink, N. van den and Vliet, L.J. van and Ginkel, M. van and Verbeek, P.W.}
    4834 }
    4835 @manual{Ieee1985,
    4836   year = {1985},
    4837   title = {{IEEE} Standard for Binary Floating-Point Arithmetic},
    4838   note = {Std. 754-1985},
    4839   address = {Standards Committee of the {IEEE} Computer Society},
    4840   author = {IEEE}
    4841 }
    4842 @article{Cairney2001,
    4843   month = {February},
    4844   year = {2001},
    4845   title = {Microstructural Analysis of a FeAl/quasicrystal-based composite prepared using a focused ion beam miller},
    4846   pages = {201--211},
    4847   journal = {Journal of Microscopy},
    4848   volume = {201, Pt 2},
    4849   author = {Cairney, J.M. and Munroe, P.R. and Sordelet, D.J.}
    4850 }
    4851 @article{Chen1994,
    4852   number = {9},
    4853   year = {1994},
    4854   title = {Segmentation and Association Among Lines and Junctions for a Line Image},
    4855   pages = {1135--1157},
    4856   journal = {Pattern Recognition},
    4857   volume = {27},
    4858   author = {Chen, Y.S.}
    4859 }
    4860 @inproceedings{Hurley1999,
    4861   year = {1999},
    4862   title = {Force Field Energy Functionals for Image Feature Extraction},
    4863   booktitle = {10th British Machine Vision Conference},
    4864   pages = {604--613},
    4865   editor = {Pridmore, T. and Elliman, D.},
    4866   volume = {2},
    4867   author = {Hurley, D.J. and Nixon, M.S. and Carter, J.N.}
    4868 }
    4869 @book{Kay1993,
    4870   year = {1993},
    4871   title = {Fundamentals of Statistical Processing: Estimation Theory},
    4872   address = {New Jersey},
    4873   publisher = {Prentice Hall},
    4874   author = {Kay, S.M.}
    4875 }
    4876 @article{Chen1993,
    4877   number = {6},
    4878   year = {1993},
    4879   title = {An Improved Line Continuation Model in Human Visual Perception},
    4880   pages = {825--842},
    4881   journal = {Pattern Recognition},
    4882   volume = {26},
    4883   author = {Chen,Y.S. and Chang, S.L. and Hsu, W.H.}
    4884 }
    4885 @article{Goldberg1991,
    4886   number = {1},
    4887   year = {1991},
    4888   title = {What Every Computer Scientist Should Know about Floating-Point Arithmetic},
    4889   pages = {5--48},
    4890   journal = {ACM Computing Surveys},
    4891   volume = {23},
    4892   author = {Goldberg, D.}
    4893 }
    4894 @article{Mancini2000,
    4895   year = {2000},
    4896   title = {Supplanting crystallography or supplementing microscopy? A combined approach to the study of an enveloped virus},
    4897   pages = {1278-1287},
    4898   journal = {Acta Crystallographica Section D},
    4899   volume = {56},
    4900   author = {Mancini, E.J. and Fuller, S.D.}
    4901 }
    4902 @inproceedings{Aguado1997,
    4903   month = {12--15 October},
    4904   year = {1997},
    4905   title = {Arbitrary Shape {Hough} Transform by Invariant Geometric Features},
    4906   booktitle = {International Conference on Systems, Man and Cybernetics},
    4907   pages = {2661--2665},
    4908   volume = {3},
    4909   author = {Aguado, A.S. and Montiel, M.E. and Nixon, M.S.},
    4910   organization = {IEEE}
    4911 }
    4912 @inproceedings{Granlund1997,
    4913   series = {Lecture Notes on Computer Science},
    4914   year = {1997},
    4915   title = {From Multidimensional Signals to the Generation of Responses},
    4916   booktitle = {Algebraic Frames for the Perception-Action Cycle (AFPAC 1997)},
    4917   editor = {Sommer, G. and Koenderink, J.J.},
    4918   volume = {1315},
    4919   address = {Kiel, Germany},
    4920   publisher = {Springer-Verlag},
    4921   author = {Granlund, G.H.}
    4922 }
    4923 @article{Smit1998,
    4924   number = {3},
    4925   month = {September},
    4926   year = {1998},
    4927   title = {Star Length Distribution: a Volume-Based Concept for the Characterization of Structural Anisotropy},
    4928   pages = {249--257},
    4929   journal = {Journal of Microscopy},
    4930   volume = {191},
    4931   author = {Smit, Th.H. and Schneider, E. and Odgaard, A.}
    4932 }
    4933 @book{Granlund1995,
    4934   year = {1995},
    4935   title = {Signal processing for computer vision},
    4936   address = {Boston/Dordrecht/London},
    4937   publisher = {Kluwer Academic Publishers},
    4938   author = {Granlund, G.H. and Knutsson, H.}
    4939 }
    4940 @mastersthesis{Brink1999,
    4941   year = {1999},
    4942   title = {Three Dimensional Image Analysis of Microstructures in Microscopical Images},
    4943   address = {Delft, The Netherlands},
    4944   school = {Delft University of Technology},
    4945   author = {Brink, N. van den}
    4946 }
    4947 @article{Acton2000a,
    4948   year = {2000},
    4949   title = {Area Operators for Edge Detection},
    4950   pages = {771--777},
    4951   journal = {Pattern Recognition Letters},
    4952   volume = {21},
    4953   author = {Acton, Scott T. and Mukherjee, Dipti Prasad}
    4954 }
    4955 @article{Forster2005,
    4956   number = {13},
    4957   year = {2005},
    4958   title = {Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography},
    4959   pages = {4729-4734},
    4960   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    4961   volume = {102},
    4962   author = {{F\"orster},F. and Medalia, O. and Zauberman, N. and Baumeiser, W. and Fass, D.}
    4963 }
    4964 @article{Mardia1999,
    4965   year = {1999},
    4966   title = {Estimation of torsion},
    4967   pages = {373--381},
    4968   journal = {Journal of Applied Statistics},
    4969   volume = {26},
    4970   author = {Mardia, K.V. and Morris, R.J. and Walder, A.N. and Koenderink, J.J}
    4971 }
    4972 @article{Torr1997,
    4973   number = {8},
    4974   year = {1997},
    4975   title = {Robust Parameterization and Computation of the Trifocal Tensor},
    4976   pages = {591--605},
    4977   journal = {Image and Vision Computing},
    4978   volume = {15},
    4979   author = {Torr, P.H.S. and Zisserman, A.}
    4980 }
    4981 @article{Richards1959,
    4982   number = {1274},
    4983   year = {1959},
    4984   title = {Electromagnetic Diffraction in Optical Systems. {II.} Structure of the Image Field in an Aplanatic System},
    4985   pages = {358-379},
    4986   journal = {Proceedings of the Royal Society of London A},
    4987   volume = {253},
    4988   author = {Richards, B. and Wolf, E.}
    4989 }
    4990 @incollection{Yuille1988,
    4991   year = {1988},
    4992   title = {Scaling and fingerprint theorems for zero-crossings},
    4993   booktitle = {Advances in computer vision, volume 2},
    4994   pages = {47--78},
    4995   editor = {Christopher Brown},
    4996   chapter = {2},
    4997   publisher = {Lawrence Erlbaum Associates, Inc},
    4998   author = {Yuille, A.L. and Poggio, T.}
    4999 }
    5000 @article{Zucker1985,
    5001   year = {1985},
    5002   title = {Early Orientation Selection: Tangent Fields and the Dimensionality of Their Support},
    5003   pages = {74--103},
    5004   journal = {Computer Vision, Graphics, and Image Processing},
    5005   volume = {32},
    5006   author = {Zucker, S.W.}
    5007 }
    5008 @article{Zucker1981,
    5009   number = {3},
    5010   year = {1981},
    5011   title = {A 3-D edge operator},
    5012   pages = {324--331},
    5013   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5014   volume = {3},
    5015   author = {Zucker, S.W. and Hummel, R.A.}
    5016 }
    5017 @article{Kurdy1989,
    5018   number = {2},
    5019   year = {1989},
    5020   title = {Directional Mathematical morphology Operations},
    5021   pages = {473--480},
    5022   journal = {Acta. Stereology},
    5023   volume = {8},
    5024   author = {Kurdy, M.B. and Jeulin, D.}
    5025 }
    5026 @article{Post2005,
    5027   number = {2},
    5028   year = {2005},
    5029   title = {One- and two-photon photoactivation of a {paGFP}-fusion protein in live {Drosophila} embryos},
    5030   pages = {325-330},
    5031   journal = {FEBS Letters},
    5032   volume = {579},
    5033   author = {Post, J.N. and Lidke, K.A. and Rieger, B. and Arndt-Jovin, D.J.}
    5034 }
    5035 @article{Bitter2001,
    5036   number = {3},
    5037   month = {July--September},
    5038   year = {2001},
    5039   title = {Penalized-Distance Volumetric Skeleton Algorithm},
    5040   pages = {195--205},
    5041   journal = {IEEE Transactions on Visualization and Computer Graphics},
    5042   volume = {7},
    5043   author = {Bitter, I. and Kaufman, A.E.}
    5044 }
    5045 @article{Jeulin2001,
    5046   year = {2001},
    5047   title = {Gypsum Morphological Analysis and Modeling},
    5048   pages = {299--311},
    5049   journal = {Cement {\&} Concrete Composites},
    5050   volume = {23},
    5051   author = {Jeulin, D. and Monnaie, P. and P?onnet, F.}
    5052 }
    5053 @article{OConner1999,
    5054   number = {7},
    5055   year = {1999},
    5056   title = {Microscale Flow Modeling in Geologic Materials},
    5057   pages = {611--616},
    5058   journal = {Phys. Chem. Earth (A)},
    5059   volume = {24},
    5060   author = {O'Conner, R.M. and Fredrich, J.T.}
    5061 }
    5062 @inproceedings{Bluestein1968,
    5063   year = {1968},
    5064   title = {A Linear Filtering Approach to the Computation of the Discrete {Fourier} Transform},
    5065   booktitle = {Northeast Electronics Res. and Eng. Meeting Record},
    5066   pages = {218--129},
    5067   volume = {10},
    5068   annote = {key_fft},
    5069   author = {Bluestein, L.I.}
    5070 }
    5071 @article{Thust1996a,
    5072   year = {1996},
    5073   title = {Focal-series reconstruction in {HRTEM}: simulation studies on non-peridc objects},
    5074   pages = {211-230},
    5075   journal = {Ultramicroscopy},
    5076   volume = {64},
    5077   author = {Thust, A. and Coene, W.M.J. and Beeck, M. op de and Dyck, D. van}
    5078 }
    5079 @book{Valeur2002,
    5080   year = {2002},
    5081   title = {Molecular Fluorescence},
    5082   address = {Weinheim},
    5083   publisher = {Wiley-VCH},
    5084   author = {Valeur, B.}
    5085 }
    5086 @article{Hiraoka1992,
    5087   number = {6},
    5088   year = {1992},
    5089   title = {Temporal and Spatial Coordination of Chromosome Movement, Spindle Formation, and Nuclear Envelope Breakdown During Prometaphase in Drosophila melanogaster Embryos},
    5090   pages = {2815-2828},
    5091   journal = {The Journal of Cell Biology},
    5092   volume = {111},
    5093   author = {Hiraoka, Y. and Agard, D.A. and Sedat, J.W.}
    5094 }
    5095 @article{Heeger1988,
    5096   year = {1988},
    5097   title = {Optical flow from spatio-temporal filters},
    5098   pages = {279--302},
    5099   journal = {International Journal of Computer Vision},
    5100   volume = {1},
    5101   author = {Heeger, D.J..}
    5102 }
    5103 @article{Cox1999,
    5104   number = {9},
    5105   month = {September},
    5106   year = {1999},
    5107   title = {Two- and Three-Dimensional Image Rotation Using the {FFT}},
    5108   pages = {1297--1299},
    5109   journal = {IEEE Transactions on Image Processing},
    5110   volume = {8},
    5111   annote = {key_fft},
    5112   author = {Cox, R.W. and Raoqiong, T.}
    5113 }
    5114 @article{Parent1989,
    5115   number = {8},
    5116   month = {August},
    5117   year = {1989},
    5118   title = {Trace Inference, Curvature Consistency, and Curve Detection},
    5119   pages = {823--839},
    5120   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    5121   volume = {11},
    5122   author = {Parent, P. and Zucker, S.W.}
    5123 }
    5124 @article{Ludtke2001,
    5125   year = {2001},
    5126   title = {A 11.5 single particle reconstruction of {GroEL} using {EMAN}},
    5127   pages = {253-262},
    5128   journal = {Journal of Molecular Biology},
    5129   volume = {314},
    5130   author = {Ludtke, S.J. and Jakana, J. and Song, J.-L. and Chuang, D.T. and Chiu, W.}
    5131 }
    5132 @article{Niessen1997,
    5133   number = {2},
    5134   year = {1997},
    5135   title = {A multiscale approach to image sequence analysis},
    5136   pages = {259-268},
    5137   journal = {Computer Vision and Image Understanding},
    5138   volume = {65},
    5139   author = {Niessen, W.J. and Duncan, J.S. and Nielsen, M. and Florack, L.M.J. and Haar Romeny, B.M. ter and Viergever, M.A.}
    5140 }
    5141 @article{Hirsh1976,
    5142   number = {2},
    5143   year = {1976},
    5144   title = {High resolution electron microscopic studies of genetic regulation},
    5145   pages = {471-490},
    5146   journal = {Journal of Molecular Biology},
    5147   volume = {108},
    5148   author = {Hirsh, J. and Schleif, R.}
    5149 }
    5150 @article{Gemkow2001,
    5151   year = {2001},
    5152   title = {Develpoment regulation of {DNA}-topoisomerases during Drosophila embryogenesis},
    5153   pages = {114-121},
    5154   journal = {Experimental Cell Research},
    5155   volume = {262},
    5156   author = {Gemkow, M.J. and Dichter, J. and Ardent-Jovin, D.J.}
    5157 }
    5158 @book{Grivet1965,
    5159   year = {1965},
    5160   title = {Electron Optics},
    5161   note = {Copy Peter Tiemeijer},
    5162   address = {London},
    5163   publisher = {Pergamon Press},
    5164   author = {Grivet, P.}
    5165 }
    5166 @inproceedings{Forstner1987,
    5167   month = {June},
    5168   year = {1987},
    5169   title = {A Fast Operator for Detection and Precise Location of Distinct Points, Corners and Centres of Circular Features},
    5170   booktitle = {ISPRS Intercommission Workshop (Interlaken)},
    5171   pages = {149--155},
    5172   annote = {Not in collection},
    5173   author = {{F\"orstner}, W. and {G\"ulch}, E.}
    5174 }
    5175 @article{Squire2004,
    5176   number = {1},
    5177   year = {2004},
    5178   title = {Red-edge anisotropy microscopy enables dynamic imaging of homo-{FRET} between fluorescent proteins in cells},
    5179   pages = {62-69},
    5180   journal = {Journal of Structural Biology},
    5181   volume = {147},
    5182   author = {Squire, A. and Verveer, P.J. and Rocks, O. and Bastiaens, P.I.H.}
    5183 }
    5184 @phdthesis{Westin1994,
    5185   year = {1994},
    5186   title = {A Tensor Framework for Multidimensional Signal Processing},
    5187   address = {{Link\"oping, Sweden}},
    5188   school = {{Link\"oping University}},
    5189   author = {Westin, C.F.}
    5190 }
    5191 @inproceedings{Matheron2002,
    5192   year = {2002},
    5193   title = {The Birth of Mathematical Morphology},
    5194   booktitle = {Mathematical Morphology, Proceedings of the VI International Symposium ISMM, Sydney, April 2002},
    5195   editor = {Talbot, H. and Beare, R.},
    5196   address = {Collingwood, Australia},
    5197   publisher = {CSIRO Publishing},
    5198   author = {Matheron, G. and Serra, J.}
    5199 }
    5200 @article{Gauch1993,
    5201   number = {6},
    5202   month = {June},
    5203   year = {1993},
    5204   title = {Multiresolution Analysis of Ridges and Valleys in Grey-Scale Images},
    5205   pages = {635--646},
    5206   journal = {IEEE Transactions on Pattern Analysis and Machine Analysis},
    5207   volume = {15},
    5208   author = {Gauch, J.M. and Pizer, S.M.}
    5209 }
    5210 @article{Dellby2001,
    5211   number = {3},
    5212   year = {2001},
    5213   title = {Progress in aberration-corrected scanning transmission electron microscopy},
    5214   pages = {177-185},
    5215   journal = {Journal of Electron Microscopy},
    5216   volume = {50},
    5217   author = {Bellby, N. and Krinvanek, O.L. and Nellist, P.D. and Batson, P.E. and Lupini, A.R.}
    5218 }
    5219 @inproceedings{Westin1992,
    5220   year = {1992},
    5221   title = {The {M\"obius} Strip Parameterization for Line Extraction},
    5222   booktitle = {Computer Vision -- ECCV92. Proceedings, 1992},
    5223   pages = {33--38},
    5224   volume = {588},
    5225   publisher = {Springer-Verlag},
    5226   author = {Westin, C.-F. and Knutsson, H.}
    5227 }
    5228 @article{Gauch1993a,
    5229   number = {8},
    5230   month = {August},
    5231   year = {1993},
    5232   title = {The Intensity Axis of Symmetry and its Application to Image Segmentation},
    5233   pages = {753--770},
    5234   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5235   volume = {15},
    5236   author = {Gauch, J.M. and Pizer, S.M.}
    5237 }
    5238 @article{Bruun1978,
    5239   number = {1},
    5240   month = {February},
    5241   year = {1978},
    5242   title = {z-Transform {DFT} Filters and {FFT}'s},
    5243   pages = {56--63},
    5244   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    5245   volume = {26},
    5246   annote = {key_fft},
    5247   author = {Bruun, G.}
    5248 }
    5249 @article{Cheng1992,
    5250   number = {4},
    5251   year = {1992},
    5252   title = {An Adaptive Morphological Filter for Image Processing},
    5253   pages = {533-539},
    5254   journal = {IEEE Transactions on Image Processing},
    5255   volume = {1},
    5256   author = {Cheng, F. and Venetsanopoulos, A. N.}
    5257 }
    5258 @article{Rockmore2000,
    5259   number = {1},
    5260   month = {January/February},
    5261   year = {2000},
    5262   title = {The {FFT} -- An Algorithm the Whole Family Can Use},
    5263   pages = {60--64},
    5264   journal = {Computing in Science \& Engineering},
    5265   volume = {2},
    5266   author = {Rockmore, D.}
    5267 }
    5268 @book{Porat1994,
    5269   year = {1994},
    5270   title = {Digital Signal Processing of Random Signals},
    5271   publisher = {Prentice Hall},
    5272   author = {Porat, B.}
    5273 }
    5274 @inproceedings{Knutsson1981a,
    5275   year = {1981},
    5276   title = {Anisotropic Filtering Controlled by Image Content},
    5277   booktitle = {Proceedings of the 2nd Scandinavian Conference on Image Analysis (Finland)},
    5278   author = {Knutsson, H. and Wilson, R. and Granlund, G.H.}
    5279 }
    5280 @book{Chung1974,
    5281   edition = {second},
    5282   year = {1974},
    5283   title = {Elementary Probability Theory with Stochastic Processes},
    5284   publisher = {Springer Verlag},
    5285   author = {Chung, K.L.}
    5286 }
    5287 @inproceedings{Barman1991a,
    5288   year = {1991},
    5289   title = {Estimation of velocity, acceleration and disparity in time sequences},
    5290   booktitle = {Proc. Conf. Pattern Recognition ICPR'91},
    5291   pages = {44-51},
    5292   author = {{B\aa rman}, H. and Haglund, L. and Granlund, G. H. and Knutsson, H.}
    5293 }
    5294 @article{Gui2000,
    5295   number = {1},
    5296   year = {2000},
    5297   title = {A comparative study of the MQD method and several correlation-based PIV evaluation algorithms},
    5298   pages = {36-44},
    5299   journal = {Experiments in Fluids},
    5300   volume = {28},
    5301   author = {Gui, L. and Merzkirch, W.}
    5302 }
    5303 @article{Li1994,
    5304   number = {8},
    5305   year = {1994},
    5306   title = {Nonlinear Diffusion with Multiple Edginess Thresholds},
    5307   pages = {1029--1037},
    5308   journal = {Pattern Recognition},
    5309   volume = {27},
    5310   author = {Li, X. and Chen, T.}
    5311 }
    5312 @article{Canny1986,
    5313   number = {6},
    5314   month = {November},
    5315   year = {1986},
    5316   title = {A Computational Approach to Edge Detection},
    5317   pages = {679--697},
    5318   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5319   volume = {8},
    5320   author = {Canny, J.}
    5321 }
    5322 @article{Rodrigo2004a,
    5323   number = {19},
    5324   year = {2005},
    5325   title = {Real-time three-dimensional optical micromanipulation of multiple particles and living cells},
    5326   pages = {2270-2273},
    5327   journal = {Optics Letters},
    5328   volume = {29},
    5329   author = {Rodrigo, P.J. and Daria, V.R. and {Gl\"uckstad}, J.}
    5330 }
    5331 @inproceedings{Bracewell1984,
    5332   month = {August},
    5333   year = {1984},
    5334   title = {The Fast {H}artley Transform},
    5335   booktitle = {Proc. IEEE},
    5336   pages = {1010--1018},
    5337   annote = {key_fft},
    5338   author = {Bracewell, R.N.}
    5339 }
    5340 @article{Coggins1985,
    5341   year = {1985},
    5342   title = {A Spatial Filtering Approach to Texture Analysis},
    5343   pages = {195--203},
    5344   journal = {Pattern Recognition Letters},
    5345   volume = {3},
    5346   author = {Coggins, J.M. and Jain, A.K.}
    5347 }
    5348 @inproceedings{Li1998,
    5349   series = {Computational Imaging and Vision},
    5350   year = {1998},
    5351   title = {Generation of the {Euclidean} Skeleton by a Bisector Decision Rule on a Two-Shortest-Vector Distance Map},
    5352   booktitle = {Mathematical Morphology and its Applications to Image and Signal Processing},
    5353   pages = {151--158},
    5354   editor = {Heijmans, H.J.A.M. and Roerdink, J.B.T.M.},
    5355   volume = {12},
    5356   publisher = {Kluwer, Dordrecht},
    5357   author = {Li, H. and Vossepoel, A.M.}
    5358 }
    5359 @article{Horbelt2002,
    5360   number = {4},
    5361   month = {April},
    5362   year = {2002},
    5363   title = {Discretization of the Radon Transform and of its Inverse by Spline Convolutions},
    5364   pages = {363--376},
    5365   journal = {IEEE Transactions on Medical Imaging},
    5366   volume = {21},
    5367   author = {Horbelt, Stefan and Liebling, Michael and Unser, Michael}
    5368 }
    5369 @article{Bracewell1983,
    5370   number = {12},
    5371   month = {December},
    5372   year = {1983},
    5373   title = {Discrete {H}artley Transform},
    5374   pages = {1832--1835},
    5375   journal = {J. Opt. Soc. Am.},
    5376   volume = {73},
    5377   annote = {key_fft},
    5378   author = {Bracewell, R.N.}
    5379 }
    5380 @article{Duda1972,
    5381   number = {1},
    5382   year = {1972},
    5383   title = {Use of the {Hough} Transformation to Detect Lines and Curves in Pictures},
    5384   pages = {11--15},
    5385   journal = {Communications of the ACM},
    5386   volume = {15},
    5387   author = {Duda, R.O. and Hart, P.E.}
    5388 }
    5389 @article{Hopt2001,
    5390   number = {4},
    5391   month = {April},
    5392   year = {2001},
    5393   title = {Highly Nonlinear Photodamage in Two-Photon Fluorescence Microscopy},
    5394   pages = {2029-2036},
    5395   journal = {Biophysical Journal},
    5396   volume = {80},
    5397   author = {Hopt, A. and Neher, E.}
    5398 }
    5399 @article{Jensen2000,
    5400   year = {2000},
    5401   title = {Defocus-gradient corrected back-projection},
    5402   pages = {57-64},
    5403   journal = {Ultramicroscopy},
    5404   volume = {84},
    5405   author = {Jensen, G.J. and Kornberg, R.D.}
    5406 }
    5407 @article{Sanz1989,
    5408   number = {7},
    5409   month = {July},
    5410   year = {1989},
    5411   title = {Image Representation by Sign Information},
    5412   pages = {729--738},
    5413   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5414   volume = {11},
    5415   author = {Sanz, J.L.C. and Huang, T.T.}
    5416 }
    5417 @article{Batson2003,
    5418   year = {2003},
    5419   title = {Aberration correction results in the {IBM STEM} instrument},
    5420   pages = {239-249},
    5421   journal = {Ultramicroscopy},
    5422   volume = {96},
    5423   author = {Batson, P.E.}
    5424 }
    5425 @article{Dorst2000,
    5426   number = {2},
    5427   month = {February},
    5428   year = {2000},
    5429   title = {The Support Cone: A Representational Tool for the Analysis of Boundaries and Their Interactions},
    5430   pages = {174--178},
    5431   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5432   volume = {22},
    5433   author = {Dorst, L. and Boomgaard, R. van den}
    5434 }
    5435 @article{Torre1986,
    5436   number = {2},
    5437   month = {March},
    5438   year = {1986},
    5439   title = {On Edge Detection},
    5440   pages = {1986},
    5441   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5442   volume = {8},
    5443   author = {Torre, V. and Poggio, T.A.}
    5444 }
    5445 @article{Montanari1968,
    5446   number = {4},
    5447   year = {1968},
    5448   title = {A Method for Obtaining Skeletons Using a Quasi-Euclidean Distance.},
    5449   pages = {600-624},
    5450   journal = {Journal of the Association for Computing Machinery},
    5451   volume = {15},
    5452   author = {Montanari,U.}
    5453 }
    5454 @inproceedings{Anwander2000,
    5455   year = {2000},
    5456   title = {Segmentation of Crystals in Microscopic Images using Multi-scale Color Gradient (MCG)},
    5457   booktitle = {International Conference on Color in Graphics and Image Processing CGIP2000},
    5458   author = {Anwander, A. and Neyran, B. and Baskurt, A.}
    5459 }
    5460 @inproceedings{Ginkel1997a,
    5461   month = {June 2-4},
    5462   year = {1997},
    5463   title = {Multi-Orientation Estimation: Selectivity and Localization},
    5464   booktitle = {Proceedings of the 3rd Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands)},
    5465   pages = {99--105},
    5466   editor = {Bal, H.E. and Corporaal, H. and Jonker, P.P. and Tonino, J.F.M.},
    5467   author = {Ginkel, M. van and Verbeek, P.W. and van Vliet, L.J.}
    5468 }
    5469 @article{Chen1989,
    5470   number = {5},
    5471   year = {1989},
    5472   title = {An Interpretive Model of Line Continuation in Human Visual Perception},
    5473   pages = {619--639},
    5474   journal = {Pattern Recognition},
    5475   volume = {22},
    5476   author = {Chen, Y.S. and Hsu, W.H.}
    5477 }
    5478 @inproceedings{Ehrich1978,
    5479   year = {1978},
    5480   title = {Elements of a structural model of texture},
    5481   booktitle = {Proceedings of PRIP},
    5482   pages = {319--326},
    5483   author = {Ehrich, R.W. and Lai, P.F.}
    5484 }
    5485 @misc{Lasenby1999,
    5486   year = {1999},
    5487   title = {A Lecture Course in Geometric Algebra},
    5488   howpublished = {{\tt http://www.mrao.cam.ac.uk/~clifford/ptIIIcourse/course99/}, Geometric Algebra Research Group, Cambridge University},
    5489   author = {Lasenby, A. and Doran, C.}
    5490 }
    5491 @inproceedings{Beaudet1978,
    5492   year = {1978},
    5493   title = {Rotationally Invariant Image Operators},
    5494   booktitle = {International Joint Conference on Pattern Recognition},
    5495   pages = {579--583},
    5496   author = {Beaudet, P.R.}
    5497 }
    5498 @article{Yildiz2003,
    5499   year = {2003},
    5500   title = {Myosin V Walks Hand-Over-Hand: Single Fluorophore Imaging with 1.5 nm localization},
    5501   pages = {2061-2066},
    5502   journal = {Science},
    5503   volume = {300},
    5504   author = {Yildiz, A. and Forkey, J.N. and McKinney, S.A. and Ha, T. and Goldman, Y.E. and Selvin, P.R.}
    5505 }
    5506 @article{ArndtJovin2006,
    5507   year = {2006},
    5508   title = {Quantum dots shed light on processes in living cells},
    5509   pages = {1-3},
    5510   journal = {SPIE Newsroom},
    5511   volume = {DOI: 10.1117/2.1200605.0228},
    5512   author = {Arndt-Jovin, D.J. and Lidke, D.S. and Lidke, K.A. and Rieger, B. and Jovin, T.M.}
    5513 }
    5514 @article{Westerweel2000,
    5515   number = {7},
    5516   year = {2000},
    5517   title = {Theoretical analysis of the measurement precision in particle image velocimetry},
    5518   pages = {S3-S12},
    5519   journal = {Experiments in Fluids },
    5520   volume = {29},
    5521   author = {Westerweel, J.}
    5522 }
    5523 @article{Schenkeveld1997,
    5524   number = {1},
    5525   year = {1997},
    5526   title = {Simulations of Measurements of Fluorescene Lifetimes Using Noise-Modulated Light},
    5527   pages = {55-58},
    5528   journal = {Journal of Fluorescence},
    5529   volume = {7},
    5530   author = {Schenkeveld, V.M.E. and Young, I.T.}
    5531 }
    5532 @article{Calabi1998,
    5533   number = {2},
    5534   year = {1998},
    5535   title = {Differential and Numerically Invariant Signature Curves Applied to Object Recognition},
    5536   pages = {107--135},
    5537   journal = {International Journal of Computer Vision},
    5538   volume = {26},
    5539   author = {Calabi, E. and Olver, P.J. and Shakiban, C. and Tannenbaum, A. and Haker, S.}
    5540 }
    5541 @article{Barth1993,
    5542   number = {6},
    5543   year = {1993},
    5544   title = {Image Encoding, Labeling, and Reconstruction from Differential Geometry},
    5545   pages = {428--446},
    5546   journal = {Graphical Models and Image Processing},
    5547   volume = {55},
    5548   author = {Barth, E. and Caelli, T. and Zetzsche, C.}
    5549 }
    5550 @book{Milnor1965,
    5551   year = {1965},
    5552   title = {Topology from the differentiable viewpoint},
    5553   address = {Princeton, New Jersey},
    5554   publisher = {Princeton University Press},
    5555   author = {Milnor, J.W.}
    5556 }
    5557 @article{Mirza1993,
    5558   number = {1},
    5559   month = {February},
    5560   year = {1993},
    5561   title = {Performance Evaluation of a Class of {M}-Estimators for Surface Parameter Estimation in Noisy Range Data},
    5562   pages = {75--85},
    5563   journal = {IEEE Transactions on Robotics and Automation},
    5564   volume = {9},
    5565   author = {Mirza, M.J. and Boyer, K.L.}
    5566 }
    5567 @article{Brockett1994,
    5568   number = {12},
    5569   year = {1994},
    5570   title = {Evolution Equations for Continuous-Scale Morphological Filtering},
    5571   pages = {3377-3386},
    5572   journal = {IEEE Transactions on Signal Processing},
    5573   volume = {42},
    5574   author = {Brockett, R. W. and Maragos, P.}
    5575 }
    5576 @inproceedings{Brockett1992,
    5577   year = {1992},
    5578   title = {Evolution Equations for Continuous-Scale Morphology},
    5579   booktitle = {IEEE International Conference on Acoustics, Speech and Signal Processing},
    5580   pages = {125-128},
    5581   volume = {3},
    5582   author = {Brockett, R. W. and Maragos, P.}
    5583 }
    5584 @article{Clapp2004,
    5585   year = {2004},
    5586   title = {Fluorescence Resonance Energy Transfer Between Quantum Dot Donors and Dye-Labeled Protein Acceptors},
    5587   pages = {301-310},
    5588   journal = {Journal of the American Chemical Society},
    5589   volume = {126},
    5590   author = {Clapp, A.R. and Medintz, I.L. and Mauro, J.M. and Fisher, B.R. and Bawendi, M.G. and Mattoussi, H.}
    5591 }
    5592 @article{Chen1995,
    5593   number = {3},
    5594   year = {1995},
    5595   title = {Recursive Erosion, Dilation, Opening, and Closing Transforms},
    5596   pages = {335-346},
    5597   journal = {IEEE Transactions on Image Processing},
    5598   volume = {4},
    5599   author = {Chen, S. and Haralick, R.M.}
    5600 }
    5601 @article{Curtis1987,
    5602   number = {1},
    5603   month = {January},
    5604   year = {1987},
    5605   title = {Reconstruction of Multidimensional Signals from Zero Crossings},
    5606   pages = {221--231},
    5607   journal = {Journal of the Optical Society of America A},
    5608   volume = {4},
    5609   author = {Curtis, S.R. and Oppenheim, A.V.}
    5610 }
    5611 @article{Rattey1981,
    5612   number = {5},
    5613   month = {October},
    5614   year = {1981},
    5615   title = {Sampling the 2-{D} {R}adon Transform},
    5616   pages = {994--1002},
    5617   journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
    5618   volume = {29},
    5619   annote = {key_radon},
    5620   author = {Rattey, P.A. and Lindgren, A.G.}
    5621 }
    5622 @article{Pluim2003,
    5623   year = {2003},
    5624   title = {Mutual-Information-based registration of medical images: a survey},
    5625   pages = {986-1004},
    5626   journal = {IEEE Transactions on Medical Imaging},
    5627   volume = {22},
    5628   author = {Pluim, J.P.W. and Maintz, J.B.A. and Viergever, M.A.}
    5629 }
    5630 @article{Volkmann2003,
    5631   number = {6},
    5632   year = {2003},
    5633   title = {Myosin isoforms show unique conformations in the actin-bound state},
    5634   pages = {3227-3232},
    5635   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    5636   volume = {100},
    5637   author = {Volkmann, N. and Ouyang, G. and Trybus, K.M. and DeRosier, D.J. and Lowey, S. and Hanein, D.}
    5638 }
    5639 @article{Pham2006,
    5640   year = {2006},
    5641   title = { Robust fusion of irregularly sampled data using adaptive normalized convolution},
    5642   pages = {1-12},
    5643   journal = {EURASIP Journal on Applied Signal Processing},
    5644   volume = { },
    5645   author = {Pham, T.Q. and Vliet, L.J. van and Schutte, K.}
    5646 }
    5647 @article{Hoyer2004,
    5648   number = {1},
    5649   year = {2004},
    5650   title = {Rapid self-assembly of $\alpha$-synuclein observed by in situ atomic force microscopy},
    5651   pages = {127-139},
    5652   journal = {Journal of Molecular Biology},
    5653   volume = {340},
    5654   author = {Hoyer, W. and Cherny, D.I. and Subramaniam, V. and Jovin, T.M.}
    5655 }
    5656 @inproceedings{Pham2005,
    5657   series = {Proceedings of SPIE Defense \& Security},
    5658   month = {March 29-30},
    5659   year = {2005},
    5660   title = {Performance of optimal registration estimators},
    5661   booktitle = {Visual Information Processing XIV},
    5662   pages = {133-144},
    5663   editor = {Rahman, Z. and Schowengerdt, R.A. and Reichenbach, S.E.},
    5664   volume = {5817},
    5665   address = {Orlando, USA},
    5666   author = {Pham, T.Q. and Bezuijen, M. and Vliet, L.J. van and Schutte, K. and Luengo Hendriks, C.L.}
    5667 }
    5668 @article{Harada2005,
    5669   number = {1},
    5670   year = {2005},
    5671   title = {Optical system for double-biprism electron holography},
    5672   pages = {19-27},
    5673   journal = {Journal of Electron Microscopy},
    5674   volume = {54},
    5675   author = {Harada, K. and Akashi, T. and Togawa, Y. and Matsuda, T. and Tonomura, A.}
    5676 }
    5677 @inproceedings{Pham2003,
    5678   series = {LNCS 2749 },
    5679   month = {June 29 -July 2 },
    5680   year = {2003},
    5681   title = {Normalized averaging using adaptive applicability functions with applications in image reconstruction from sparsely and randomly sampled data},
    5682   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    5683   pages = {485-492},
    5684   editor = {{Big\"un}, J. and Gustavsson, T. },
    5685   address = {Berlin},
    5686   publisher = {Springer-Verlag },
    5687   author = {Pham, T.Q. and Vliet, L.J. van}
    5688 }
    5689 @article{Scharcanski2000,
    5690   number = {5},
    5691   month = {October},
    5692   year = {2000},
    5693   title = {Stochastic Texture Image Estimators for Local Spatial Anisotropy and Its Variability},
    5694   pages = {971--979},
    5695   journal = {IEEE Transactions on Instrumentation and Measurement},
    5696   volume = {49},
    5697   author = {Scharcanski, J. and Dodson, C.T.J.}
    5698 }
    5699 @article{Ballard1983,
    5700   number = {6},
    5701   year = {1983},
    5702   title = {Viewer Independent Shape Recognition},
    5703   pages = {653--660},
    5704   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5705   volume = {5},
    5706   annote = {key_radon},
    5707   author = {Ballard, D.H. and Sabbah, D.}
    5708 }
    5709 @incollection{Alvarez1994,
    5710   year = {1994},
    5711   title = {Morphological Approach to Multi-scale Analysis: From Principles to Equations},
    5712   booktitle = {Geometry-Driven Diffusion in Computer Vision},
    5713   editor = {Viergever, M. A.},
    5714   address = {Dordrecht},
    5715   publisher = {Kluwer Academic Publishers},
    5716   author = {Alvarez, L. and Morel, J.-M.}
    5717 }
    5718 @inproceedings{Diehl1989,
    5719   year = {1989},
    5720   title = {Planar motion estimation with a fast converging algorithm},
    5721   booktitle = {Proc. 8th Int. Conf. Pattern Recognition, ICPR'86},
    5722   pages = {1099--1102},
    5723   address = {Paris, France},
    5724   author = {Diehl, N. and Burkhardt, H.}
    5725 }
    5726 @article{Dirks1999,
    5727   number = {3-4},
    5728   year = {1999},
    5729   title = {Synthesis, processing, and transport of {RNA} within the three-dimensional context of the cell nucleus},
    5730   pages = {191-201},
    5731   journal = {Crit Rev Eukaryot Gene Expr},
    5732   volume = {9},
    5733   author = {Dirks, R.W. and Hattinger, C.M. and Molenaar, C. and Snaar, S.P.}
    5734 }
    5735 @phdthesis{Kirchgessner2003,
    5736   month = {April},
    5737   year = {2003},
    5738   title = {Extraktion Physiologischer Koordinatensysteme von Pflanzenwurzeln und {-Bl\"attern} aus Bildsequenzen},
    5739   address = {Heidelberg, Germany},
    5740   school = {Ruprechts-Karls-{Universit\"at} University},
    5741   author = {Kirchgessner, N.}
    5742 }
    5743 @article{Vandergheynst2002,
    5744   number = {4},
    5745   month = {April},
    5746   year = {2002},
    5747   title = {Directional Dyadic Wavelet Transforms: Design and Algorithms},
    5748   pages = {363--372},
    5749   journal = {IEEE Transactions on Image Processing},
    5750   volume = {11},
    5751   author = {Vandergheynst, P. and Gobbers, J.-F.}
    5752 }
    5753 @article{Meyer2002,
    5754   year = {2002},
    5755   title = {A new method for the determination of the wave aberration function for high resolution {TEM} {1. Measurement} of the symmetric aberrations},
    5756   pages = {89-109},
    5757   journal = {Ultramicroscopy},
    5758   volume = {92},
    5759   author = {Meyer, R.R. and Kirkland, A.I. and Saxton, W.O.}
    5760 }
    5761 @article{Kubitscheck2000,
    5762   month = {April},
    5763   year = {2000},
    5764   title = {Imaging and Tracking of Single {GFP} Molecules in Solution},
    5765   pages = {2170-2179},
    5766   journal = {Biophysical Journal},
    5767   volume = {78},
    5768   author = {Kubitscheck, U. and {K\"uckmann}, O. and Kues, T. and Peters, R.}
    5769 }
    5770 @inproceedings{Harris1988,
    5771   month = {31 August--2 September},
    5772   year = {1988},
    5773   title = {A Combined Corner and Edge Detector},
    5774   booktitle = {Proceedings of the fourth Alvey Vision Conference},
    5775   pages = {147--151},
    5776   author = {Harris, C. and Stephens, M.},
    5777   organization = {University of Manchester}
    5778 }
    5779 @inproceedings{Harris1987,
    5780   year = {1987},
    5781   title = {Determination of Ego-Motion from Matched Points},
    5782   booktitle = {Proceedings of the Alvey Vision Conference},
    5783   annote = {Not in collection},
    5784   author = {Harris, C.G.}
    5785 }
    5786 @article{Muller2001,
    5787   number = {3},
    5788   year = {2001},
    5789   title = {Optimizing the environment for sub-0.2 nm scanning transmission electron microscopy},
    5790   pages = {219-226},
    5791   journal = {Journal of Electron Microscopy},
    5792   volume = {50},
    5793   author = {Muller, D.A. and Grazul, J.}
    5794 }
    5795 @misc{Mathematica,
    5796   year = {1998},
    5797   title = {Mathematica 4},
    5798   note = {{\tt www.wolfram.com}},
    5799   author = {Wolfram Research}
    5800 }
    5801 @article{Leis2006,
    5802   number = {3},
    5803   year = {2006},
    5804   title = {The essential role of digital signal processing in automated tomography},
    5805   pages = {95-103},
    5806   journal = {IEEE Signal Processing Magazine},
    5807   volume = {23},
    5808   author = {Leis, A.P. and Beck, M. and Gruska, M. and Best, C. and Hegerl, R. and Baumeister, W. and Leis, J.W.}
    5809 }
    5810 @article{Kube1996,
    5811   number = {10},
    5812   month = {October},
    5813   year = {1996},
    5814   title = {Scale-space Properties of Quadratic Feature Detectors},
    5815   pages = {987--999},
    5816   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5817   volume = {18},
    5818   author = {Kube, P. and Perona, P.}
    5819 }
    5820 @article{Bluestein1970,
    5821   number = {4},
    5822   month = {December},
    5823   year = {1970},
    5824   title = {A Linear Filtering Approach to the Computation of Discrete {Fourier} Transform},
    5825   pages = {451--455},
    5826   journal = {IEEE Transactions on Audio and Electroacoustics},
    5827   volume = {18},
    5828   annote = {key_fft},
    5829   author = {Bluestein, L.I.}
    5830 }
    5831 @article{Danielsson1980,
    5832   year = {1980},
    5833   title = {Euclidean Distance Mapping},
    5834   pages = {227--248},
    5835   journal = {Computer Graphics and Image Processing},
    5836   volume = {14},
    5837   author = {Danielsson, P.-E.}
    5838 }
    5839 @article{Molenaar2003a,
    5840   number = {24},
    5841   year = {2003},
    5842   title = {Visualizing telomere dynamics in living mammalian cells using {PNA} probes},
    5843   pages = {6631-6641},
    5844   journal = {The EMBO Journal},
    5845   volume = {22},
    5846   author = {Molenaar, C. and Wiesmeijer, K. and Verwoerd, N.P. and Khazen, S. and Eils, R. and Tanke, H.J. and Dirks, R.W.}
    5847 }
    5848 @article{Rieger2004d,
    5849   number = {3},
    5850   year = {2004},
    5851   title = {Diffusion of microspheres in sealed and open microarrays},
    5852   pages = {218-225},
    5853   journal = {Microscopy Research and Technique},
    5854   volume = {65},
    5855   author = {Rieger, B. and Dietrich, H.R.C. and Doel, L.R. van den and Vliet, L.J. van}
    5856 }
    5857 @phdthesis{Rieger2004a,
    5858   year = {2004},
    5859   title = {Structure from Motion in nD Image Analysis},
    5860   note = {digital version available:\\\ {\small\tt http://www.ph.tn.tudelft.nl/Publications/PHDTheses/BRieger/thesis_rieger.html}},
    5861   address = {Delft, The Netherlands},
    5862   school = {Delft University of Technology},
    5863   author = {Rieger, B.}
    5864 }
    5865 @misc{Krivanek2003,
    5866   year = {2003},
    5867   title = {Autoadjusting charged-particle probe-forming apparatus},
    5868   howpublished = {US6552340},
    5869   author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.}
    5870 }
    5871 @article{Royer2000,
    5872   year = {2000},
    5873   title = {Structural hierarchy in erythrocruorin, the giant respiratory assemblage of annelids},
    5874   pages = {7107-7111},
    5875   journal = {Biochemistry},
    5876   volume = {97},
    5877   author = {Royer, W.E. Jr. and Strand, K. and Heel, M. van and Hendrickson, W.A. }
    5878 }
    5879 @article{Rieger2004b,
    5880   number = {8},
    5881   year = {2004},
    5882   title = {On curvature estimation of iso-surfaces in {3D} gray-value images and the computation of shape descriptors},
    5883   pages = {1088-1094},
    5884   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    5885   volume = {26},
    5886   author = {Rieger, B. and Timmermans, F.J. and Vliet, L.J. van and Verbeek, P.W.}
    5887 }
    5888 @article{Desbat1993,
    5889   year = {1993},
    5890   title = {Efficient Sampling on Coarse Grids in Tomography},
    5891   pages = {251--269},
    5892   journal = {Inverse Problems},
    5893   volume = {9},
    5894   annote = {key_radon},
    5895   author = {Desbat, L.}
    5896 }
    5897 @article{Goldman2002,
    5898   year = {2002},
    5899   title = {A new window on the cell's inner workings},
    5900   pages = {1155-1156},
    5901   journal = {Science},
    5902   volume = {298},
    5903   author = {Goldmann, E.}
    5904 }
    5905 @misc{WeickertYYYY,
    5906   title = {On the History of Gaussian Scale-Space Axiomatics},
    5907   annote = {Chapter 4 from something},
    5908   author = {Weickert, J. and Ishikawa, S. and Imiya, A.}
    5909 }
    5910 @article{DorphPetersen2000,
    5911   month = {November},
    5912   year = {2000},
    5913   title = {Non-Uniform Systematic Sampling in Stereology},
    5914   pages = {148--157},
    5915   journal = {Journal of Microscopy},
    5916   volume = {200, Pt 2},
    5917   author = {Dorph-Petersen, K.-A. and Gundersen, H.J.G. and Jensen, E.B.V.}
    5918 }
    5919 @article{Fernandez1997,
    5920   year = {1997},
    5921   title = {A spectral estimation approach to contrast transfer function detection in electron microscopy},
    5922   pages = {267-295},
    5923   journal = {Ultramicroscopy},
    5924   volume = {68},
    5925   author = {Feranandez, J.J. and Sanjurjo, J.R. and Carazo, J.-M.}
    5926 }
    5927 @inproceedings{Bakker2001a,
    5928   month = {May 30-june 1},
    5929   year = {2001},
    5930   title = {Analysis and detection of 3-D curvilinear structures},
    5931   booktitle = {ASCI'01 (Heijen, The Netherlands)},
    5932   pages = {35--40},
    5933   editor = {Vliet, L.J. van and Heijnsdijk, J.W.K. and Kielmann, T. and Knijnenburg, P.M.W.},
    5934   author = {Bakker, P. and Verbeek, P.W. and Vliet, L.J. van},
    5935   organization = {ASCI}
    5936 }
    5937 @article{Rodrigo2004,
    5938   number = {7},
    5939   year = {2004},
    5940   title = {Real-time interactive optical micromanipulation of a mixture of high- and low-index particles},
    5941   pages = {1417-1425},
    5942   journal = {Optics Express},
    5943   volume = {12},
    5944   author = {Rodrigo, P.J. and Daria, V.R. and {Gl\"uckstad}, J.}
    5945 }
    5946 @unpublished{Verbeek2001a,
    5947   title = {Continuous Cube to Cube Mappings as Analytic 3{D} Look-up Tables for {RGB} Color Rendering},
    5948   author = {Verbeek, P.W.}
    5949 }
    5950 @article{Rodrigo2005,
    5951   number = {7},
    5952   year = {2005},
    5953   title = {Four-dimensional optical manipulation of colloidal particles},
    5954   pages = {074103},
    5955   journal = {Applied Physics Letters},
    5956   volume = {86},
    5957   author = {Rodrigo, P.J. and Daria, V.R. and {Gl\"uckstad}, J.}
    5958 }
    5959 @inproceedings{Niblack1988,
    5960   month = {June},
    5961   year = {1988},
    5962   title = {On Improving the Accuracy of the {H}ough Transform: Theory, Simulations, and Experiments},
    5963   booktitle = {Proceedings of the IEEE Computer Society Conference CVPR (Ann-Arbor)},
    5964   pages = {574--579},
    5965   annote = {key_radon},
    5966   author = {Niblack, W. and Petkovic, D.}
    5967 }
    5968 @article{Gautier2001,
    5969   number = {6},
    5970   year = {2001},
    5971   title = {Homo-{FRET} Microscopy in Living Cells to Measure Monomer-Dimer Transition of {GFP}-Tagged Proteins},
    5972   pages = {3000-3008},
    5973   journal = {Biophysical Journal},
    5974   volume = {80},
    5975   author = {Gautier, I. and Tramier, C. and Coppey, J. and Pansu, R.B. and Nicolas, J-C. and Kemnitz, K. and Coppey-Moisan, M.}
    5976 }
    5977 @inproceedings{Nystrom2001,
    5978   series = {Lecture Notes on Computer Science},
    5979   year = {2001},
    5980   title = {Curve Skeletonization by Junction Detection in Surface Skeletons},
    5981   booktitle = {IWVF4, 4th International Workshop on Visual Form},
    5982   pages = {229--238},
    5983   editor = {Arcelli, C. and Cordella, L.P. and Sanniti di Baja, G.},
    5984   volume = {2059},
    5985   publisher = {Springer-Verlag},
    5986   author = {{Nystr\"om}, I. and Sanniti di Baja, G. and Svensson, S.}
    5987 }
    5988 @article{Cianci2004,
    5989   number = {2},
    5990   year = {2004},
    5991   title = {Saturation Modified Point Spread Functions in Two-Photon Microscopy},
    5992   pages = {135-141},
    5993   journal = {Microscopy Research and Technique},
    5994   volume = {64},
    5995   author = {Cianci, G.C. and Wu, J. and Berland, K.M.}
    5996 }
    5997 @article{Good1971,
    5998   number = {3},
    5999   month = {March},
    6000   year = {1971},
    6001   title = {The Relationship Between two Fast {Fourier} Transforms},
    6002   pages = {310--317},
    6003   journal = {IEEE Transactions on Computers},
    6004   volume = {C-20},
    6005   annote = {key_fft},
    6006   author = {Good, I.J.}
    6007 }
    6008 @manual{Ieee1987,
    6009   year = {1987},
    6010   title = {{IEEE} Standard for Radix-Independent Floating-Point Arithmetic},
    6011   note = {Std. 854-1987},
    6012   address = {Technical Committee on Microprocessors and Microcomputers of the {IEEE} Computer Society},
    6013   author = {IEEE}
    6014 }
    6015 @book{Spivak1979,
    6016   year = {1979},
    6017   title = {A Comprehensive Introduction to Differential Geometry},
    6018   volume = {2},
    6019   address = {Berkley},
    6020   publisher = {Publish or Perish},
    6021   author = {M. Spivak}
    6022 }
    6023 @inproceedings{Paeth1986,
    6024   year = {1986},
    6025   title = {A Fast Algorithm for General Raster Rotation},
    6026   booktitle = {Graphics Interface '86},
    6027   pages = {77--81},
    6028   editor = {Green, M.},
    6029   author = {Paeth, A.W.}
    6030 }
    6031 @article{Dong1998,
    6032   year = {1998},
    6033   title = {Particle Polymorphism Caused by Deletion of a Peptide Molecular Switch in a Quasiequivalent Icosahedral Virus},
    6034   pages = {6024-6033},
    6035   note = {Ultramicroscopy},
    6036   journal = {Journal of Virology},
    6037   volume = {72},
    6038   author = {Dong, X.F. and Natarajan, P. and Tihova, M. and Johnson, J.E. and Schneemann, A.}
    6039 }
    6040 @phdthesis{Barman1991,
    6041   year = {1991},
    6042   title = {Hierarchical Curvature Estimation in Computer Vision},
    6043   school = {{Link\"oping} University, Sweden},
    6044   author = {{B\aa rman}, H.}
    6045 }
    6046 @article{Zetzsche1991,
    6047   year = {1991},
    6048   title = {Direct detection of flow discontinuities by 3D curvature operators},
    6049   pages = {771--779},
    6050   journal = {Pattern Recognition Letters},
    6051   volume = {12},
    6052   author = {Zetzsche, C. and Barth, E.}
    6053 }
    6054 @inproceedings{Barman1990,
    6055   year = {1990},
    6056   title = {Estimation of Curvature in 3-{D} Images Using Tensor Field Filtering},
    6057   booktitle = {Computer Vision -- ECCV90. Proceedings, 1990},
    6058   pages = {563--565},
    6059   editor = {O. Faugeras},
    6060   publisher = {Springer-Verlag},
    6061   author = {{B\aa rman}, H. and Granlund, G. H. and Knutsson, H.}
    6062 }
    6063 @article{Minkowski1903,
    6064   year = {1903},
    6065   title = {Volumen und {Oberfl\"achen}},
    6066   pages = {447--495},
    6067   journal = {Mathematische Annalen},
    6068   author = {Minkowski, H.}
    6069 }
    6070 @book{Foley1996,
    6071   edition = {2},
    6072   year = {1996},
    6073   title = {Computer graphics, principles and practice},
    6074   address = {London},
    6075   publisher = {Addison-Wesley},
    6076   author = {Foley, J.D. and Dam, A. van and Feiner, S.K. and Hughes, J.F.}
    6077 }
    6078 @book{Boyce1986,
    6079   edition = {fourth},
    6080   year = {1986},
    6081   title = {Elementary differential equations and boundary value problems},
    6082   publisher = {John Wiley \& sons},
    6083   author = {Boyce, W.E. and DiPrima, R.C.}
    6084 }
    6085 @article{Cranage1988,
    6086   number = {726},
    6087   year = {1988},
    6088   title = {Ring Artifacts in {X}-Ray Computed Tomography},
    6089   pages = {529--529},
    6090   journal = {British Journal of Radiology},
    6091   volume = {61},
    6092   author = {Cranage, R.W. and Tofts, P.S.}
    6093 }
    6094 @inproceedings{Luengo2001,
    6095   series = {Lecture Notes on Computer Science},
    6096   year = {2001},
    6097   title = {Segmentation-Free Estimation of Length Distributions Using Sieves and RIA Morphology},
    6098   booktitle = {Proc. Third International Conference on Scale-Space},
    6099   pages = {389--406},
    6100   editor = {Kerckhove, M.},
    6101   volume = {2106},
    6102   address = {Vancouver, Canada},
    6103   publisher = {Springer-Verlag},
    6104   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    6105 }
    6106 @article{Hillyard1993,
    6107   year = {1993},
    6108   title = {Thickness effects in {ADF STEM} zone axis images},
    6109   pages = {325-334 },
    6110   journal = {Ultramicroscopy},
    6111   volume = {52},
    6112   author = {Hillyard, J. and Silcox, J.}
    6113 }
    6114 @phdthesis{Aronsson2002,
    6115   year = {2002},
    6116   title = {On 3D Fibre Measurement of Digitized Paper},
    6117   address = {Uppsala, Sweden},
    6118   school = {Swedish University of Agricultural Science},
    6119   author = {Aronsson, M.}
    6120 }
    6121 @inbook{Berkner1995,
    6122   year = {1995},
    6123   title = {Visualisierung - Dynamik und {Komplexit\"at}},
    6124   chapter = {Eine lokale Charakterisierung von Kanten basierend auf Skalierungseigenschaften von Wavelet-Transformation},
    6125   publisher = {Tagungsband Bremen},
    6126   author = {Berkner, K. and Evertsz, C.J.G. and Berghorn, W.}
    6127 }
    6128 @article{Martens1997,
    6129   number = {8},
    6130   month = {August},
    6131   year = {1997},
    6132   title = {Local Orientation Analysis in Images by Means of the Hermite Transform},
    6133   pages = {1103--1116},
    6134   journal = {IEEE Transactions on Image Processing},
    6135   volume = {6},
    6136   author = {Martens, J.B.}
    6137 }
    6138 @inproceedings{Wheeler2000,
    6139   year = {2000},
    6140   title = {Processing Color and Complex Data using Mathematical Morphology},
    6141   booktitle = {Proceedings of the IEEE, National Aerospace and Electronics Conference},
    6142   pages = {618-624},
    6143   volume = {1},
    6144   address = {Berlin},
    6145   author = {Wheeler, M. and Zmuda, M. A.}
    6146 }
    6147 @article{Svensson2002,
    6148   year = {2002},
    6149   title = {Distance transforms in 3D using four different weights},
    6150   pages = {1407--1418},
    6151   journal = {Pattern Recognition Letters},
    6152   volume = {23},
    6153   author = {Svensson, S. and Borgefors, G.}
    6154 }
    6155 @article{Mattheyses2004,
    6156   number = {4},
    6157   year = {2004},
    6158   title = {Polarized Fluorescence Resonance Energy Transfer Microscopy},
    6159   pages = {2787-2797},
    6160   journal = {Biophysical Journal},
    6161   volume = {87},
    6162   author = {Mattheyses, A.L. and Hoppe, A.D. and Axelrod, D.}
    6163 }
    6164 @phdthesis{Verveer1998b,
    6165   year = {1998},
    6166   title = {Computational and Optical Methods for Improving Resolution and Signal Quality in Fluorescence Microscopy},
    6167   type = {Thesis},
    6168   address = {Delft, The Netherlands},
    6169   school = {Technische Universiteit Delft},
    6170   author = {Verveer, P.J.}
    6171 }
    6172 @inproceedings{Illers2004a,
    6173   year = {2004},
    6174   title = {Measurement of correlated noise in images of computed radiography systems and its influence on the detective quantum efficiency},
    6175   booktitle = {Proceedings of SPIE},
    6176   address = {San Diego, California, USA},
    6177   author = {Illers, H. and Broucke, D. van den and Buhr, E.}
    6178 }
    6179 @article{Verveer1998a,
    6180   number = {26},
    6181   year = {1998},
    6182   title = {Improved Restoration from Multiple Images of a Single Object: Application to Fluorescence Microscopy},
    6183   pages = {6240-6239},
    6184   journal = {Applied Optics},
    6185   volume = {37},
    6186   author = {Verveer, P.J. and Jovin, T.M.}
    6187 }
    6188 @book{Serra1988,
    6189   year = {1988},
    6190   title = {Image Analysis and Mathematical Morphology, Volume 2: Theoretical Advances},
    6191   editor = {Serra, J.},
    6192   address = {London},
    6193   publisher = {Academic Press}
    6194 }
    6195 @article{Chen2000,
    6196   number = {5},
    6197   month = {May},
    6198   year = {2000},
    6199   title = {Orientation Space Filtering for Multiple Orientation Line Segmentation},
    6200   pages = {417--429},
    6201   journal = {Pattern Analysis and Machine Intelligence},
    6202   volume = {22},
    6203   author = {Chen, J. and Sato, Y. and Tamura, S.}
    6204 }
    6205 @article{Hestenes1994a,
    6206   number = {1},
    6207   year = {1994},
    6208   title = {Invariant Body Kinematics: {II}. Reaching and Neurogeometry},
    6209   pages = {79--88},
    6210   journal = {Neural Networks},
    6211   volume = {7},
    6212   author = {Hestenes, D.}
    6213 }
    6214 @article{Zemlin2002,
    6215   year = {2002},
    6216   title = {Diffractogram tableaux by mouse click},
    6217   pages = {77-82},
    6218   journal = {Ultramicroscopy},
    6219   volume = {93},
    6220   author = {Zemlin, J. and Zemlin, F.}
    6221 }
    6222 @inproceedings{Papoulis1976,
    6223   month = {August},
    6224   year = {1976},
    6225   title = {Topics in Signal Analysis},
    6226   booktitle = {International Conference on Information Sciences and Systems},
    6227   pages = {247--249},
    6228   address = {Patras, Greece},
    6229   author = {Papoulis, A.}
    6230 }
    6231 @techreport{Calway1991,
    6232   month = {September},
    6233   year = {1991},
    6234   title = {Incorporating Orientation Selectivity in Wavelet Transforms for Multiresolution {Fourier} Analysis of Images},
    6235   note = {LiTH-ISY-I-1243},
    6236   institution = {{Link\"oping University}},
    6237   author = {Calway, A.}
    6238 }
    6239 @article{Esa2000,
    6240   number = {2},
    6241   year = {2000},
    6242   title = {Three-dimensional spectral precision distance microscopy of chromatin nanostructures after triple-colour {DNA} labelling: a study of the {BCR} region on chromosome 22 and the {Philadelphia} chromosome},
    6243   pages = {96-105},
    6244   journal = {Journal of Microscopy},
    6245   volume = {199},
    6246   author = {Esa, A. and Edelmann, P. and Kreth, G. and Trakhtenbrot, L. and Amariglio, N. and Rechavi, G. and Hausmann, M. and Cremer, C.}
    6247 }
    6248 @article{Greenspan1992,
    6249   number = {11},
    6250   month = {November},
    6251   year = {1992},
    6252   title = {Projection-based Approach to Image Analysis: Pattern Recognition and Representation in the Position-Orientation Space},
    6253   pages = {1105--1110},
    6254   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6255   volume = {14},
    6256   author = {Greenspan, H. and Porat, M. and Zeevi, Y.Y.}
    6257 }
    6258 @article{Nakagawa1978,
    6259   number = {8},
    6260   year = {1978},
    6261   title = {A Note on the Use of Local Min and Max Operations in Digital Picture Processing},
    6262   pages = {3},
    6263   journal = {IEEE Transactions on Systems, Man and Cybernetics},
    6264   volume = {8},
    6265   author = {Nakagawa, Y. and Rosenfeld, A.}
    6266 }
    6267 @article{Lenz1987,
    6268   number = {2},
    6269   year = {1987},
    6270   title = {Optimal Filters for the Detection of Linear Patterns in 2-{D} and Higher Dimensional Images},
    6271   pages = {163--172},
    6272   journal = {Pattern Recognition},
    6273   volume = {20},
    6274   author = {Lenz, R.}
    6275 }
    6276 @book{Oppenheim1983,
    6277   year = {1983},
    6278   title = {Signals and Systems},
    6279   address = {London},
    6280   publisher = {Prentice-Hall International},
    6281   author = {Oppenheim, A.V. and Willsky, A.S. and Young, I.T.}
    6282 }
    6283 @article{Abels2005,
    6284   year = {2005},
    6285   title = {Single-Molecule Measurements of the Persistence Length of Double-Stranded {RNA}},
    6286   pages = {2737-2744},
    6287   journal = {Biophysical Journal},
    6288   volume = {88},
    6289   author = {Abels, J.A. and Moreno-Herreo, F. and Heijden, T. van der and Dekker, C. and Dekker, N.H.}
    6290 }
    6291 @inproceedings{Breton1996kort,
    6292   year = {1996},
    6293   title = {Shadows and Shading Flow Fields },
    6294   booktitle = {CVPR'96 },
    6295   pages = {782--789},
    6296   author = {Breton, P. and Zucker, S.W. }
    6297 }
    6298 @book{Tukey1977,
    6299   year = {1977},
    6300   title = {Exploratory Data Analysis},
    6301   address = {Reading, Massachusetts},
    6302   publisher = {Addison-Wesley},
    6303   author = {Tukey, J. W.}
    6304 }
    6305 @article{Rotem1986,
    6306   number = {5},
    6307   month = {October},
    6308   year = {1986},
    6309   title = {Image Reconstruction from Zero Crossings},
    6310   pages = {1269--1277},
    6311   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    6312   volume = {34},
    6313   author = {Rotem, D. and Zeevi, Y.Y.}
    6314 }
    6315 @article{Vigneau2000,
    6316   year = {2000},
    6317   title = {Number of Particles for the Determination of Size Distribution from Microscopic Images},
    6318   pages = {243--250},
    6319   journal = {Powder Technology},
    6320   volume = {107},
    6321   author = {Vigneau, E. and Loisel, C. and Devaux, M.F. and Cantoni, P.}
    6322 }
    6323 @article{Ammouche2001,
    6324   year = {2001},
    6325   title = {Image Analysis for the Automated Study of Microcracks in Concrete},
    6326   pages = {267--278},
    6327   journal = {Cement \& Concrete Composites},
    6328   volume = {23},
    6329   author = {Ammouche, A. and Riss, J. and Breysse, D. and Marchand, J.}
    6330 }
    6331 @article{Vincent1991,
    6332   number = {6},
    6333   month = {June},
    6334   year = {1991},
    6335   title = {Watersheds in Digital Spaces: An Efficient Algorithm Based on Immersion Simulations},
    6336   pages = {583--598},
    6337   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6338   volume = {13},
    6339   author = {Vincent, L. and Soille, P.}
    6340 }
    6341 @unpublished{Verbeek2002,
    6342   title = {De Relatie van {L}arkin, {B}one and {O}ldfield (2001) en Felsberg en Sommer (2001) met het vectorgradient verhaal (PWV, submitted to ICPR2002)},
    6343   author = {Verbeek, P.W.}
    6344 }
    6345 @article{Vincent1993,
    6346   number = {2},
    6347   month = {April},
    6348   year = {1993},
    6349   title = {Morphological Grayscale Reconstruction in Image Analysis: Applications and Efficient Algorithms},
    6350   pages = {176--201},
    6351   journal = {IEEE Transactions on Image Processing},
    6352   volume = {2},
    6353   author = {Vincent, L.}
    6354 }
    6355 @article{Gadella1997,
    6356   number = {1},
    6357   year = {1997},
    6358   title = {Fast algorithms for the analysis of single and double exponential decay curves with a background term. Application to time-resolved imaging microscopy},
    6359   pages = {19-39},
    6360   journal = {Bioimaging},
    6361   volume = {5},
    6362   author = {Gadella, T.W.J. jr. and Jovin, T.M.}
    6363 }
    6364 @article{Gadella1995,
    6365   number = {6},
    6366   year = {1995},
    6367   title = {Oligomerization of Epidermal Growth Factor Receptors on {A431} Cells Studied by Time-resolved Fluorescence Imaging Microscopy. {A} Stereochemical Model for Tyrosine Kinase Receptor Activation},
    6368   pages = {1543-1558},
    6369   journal = {Journal of Cell Biology},
    6370   volume = {129},
    6371   author = {Gadella, T.W.J. jr. and Jovin, T.M.}
    6372 }
    6373 @book{Matheron1975,
    6374   year = {1975},
    6375   title = {Random Sets and Integral Geometry},
    6376   address = {New York},
    6377   publisher = {Wiley},
    6378   author = {Matheron, G.}
    6379 }
    6380 @book{Weisstein1999,
    6381   year = {1999},
    6382   title = {Concise Encyclopedia of Mathematics},
    6383   publisher = {CRC},
    6384   author = {Weisstein, E.W.}
    6385 }
    6386 @article{Gadella1994,
    6387   number = {3},
    6388   year = {1994},
    6389   title = {Fluorescence lifetime imaging microscopy: Pixel-by-pixel analysis of phase-modulation data},
    6390   pages = {139-159},
    6391   journal = {Bioimaging},
    6392   volume = {2},
    6393   author = {Gadella, T.W.J. jr. and Clegg, R.M. and Jovin, T.M.}
    6394 }
    6395 @article{Kratky1949,
    6396   year = {1949},
    6397   title = {{R\"ontgenuntersuchungen gel\"oster Fadenmolek\"ule}},
    6398   pages = {1106-1124},
    6399   journal = {Rec. Trav. Chim. Pays-Bas Belg},
    6400   volume = {68},
    6401   author = {Kratky, O. and Porod, G.}
    6402 }
    6403 @article{Maragos1996,
    6404   number = {6},
    6405   year = {1996},
    6406   title = {Differential Morphology and Image Processing},
    6407   pages = {922-937},
    6408   journal = {IEEE Transactions on Image Processing},
    6409   volume = {5},
    6410   author = {Maragos, Petros}
    6411 }
    6412 @inproceedings{Leavers2000,
    6413   month = {September 3-7},
    6414   year = {2000},
    6415   title = {Analysis of Wear Particles Using the Radon Transform},
    6416   booktitle = {ICPR15, Proc. 15th Int. Conference on Pattern Recognition (Barcelona, Spain)},
    6417   pages = {764--766},
    6418   editor = {Sanfeliu, A. and Villanueva, J.J. and Vanrell, M. and Alquezar, R. and Huang, T. and Serra, J. },
    6419   annote = {key_radon},
    6420   publisher = {IEEE Computer Society Press, Los Alamitos },
    6421   author = {Leavers, V.F.}
    6422 }
    6423 @article{Cosgriff2005,
    6424   year = {2005},
    6425   title = {The spatial resolution of imaging using core-loss spectroscopy in the scanning transmission electron microscope},
    6426   pages = {317-326},
    6427   journal = {Ultramicroscopy},
    6428   volume = {102},
    6429   author = {Cosgriff, E.C. and Oxley, M.P. and Allen, L.J. and Pennycock, S.J.}
    6430 }
    6431 @phdthesis{Freeman1992,
    6432   year = {1992},
    6433   title = {Steerable Filters and Local Analysis of Image Structure},
    6434   school = {Massachusetts Institute of Technology},
    6435   author = {Freeman, W.T.}
    6436 }
    6437 @article{Freeman1991,
    6438   number = {9},
    6439   month = {September},
    6440   year = {1991},
    6441   title = {The Design and Use of Steerable Filters},
    6442   pages = {891--906},
    6443   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6444   volume = {13},
    6445   author = {Freeman, W.T. and Adelson, E.H.}
    6446 }
    6447 @inproceedings{Lindeberg1993a,
    6448   month = {May},
    6449   year = {1993},
    6450   title = {On Scale Selection for Differential Operators},
    6451   booktitle = {Proc. 8th Scandinavian Conference on Image Analysis ({Troms\o} Norway)},
    6452   pages = {857--866},
    6453   author = {Lindeberg, T.}
    6454 }
    6455 @inproceedings{Lindeberg1993b,
    6456   year = {1993},
    6457   title = {Shape from texture from a multi-scale perspective},
    6458   booktitle = {Proceeding of the 4th International Conference on Computer Vision},
    6459   address = {Berlin, Germany},
    6460   author = {Lindeberg, T. and {G\aa rding}, J.}
    6461 }
    6462 @misc{DIPimage,
    6463   year = {1999-},
    6464   title = {{DIPimage}: a scientific image processing toolbox for {MATLAB}},
    6465   note = {Delft University of Technology, {\tt http://www.qi.tnw.tudelft.nl/DIPlib}},
    6466   author = {Luengo Hendriks, C.L. and Rieger, B. and Ginkel, M. van and Kempen, G.M.P. van and Vliet, L.J. van}
    6467 }
    6468 @inproceedings{Yu1998,
    6469   month = {June 23-25},
    6470   year = {1998},
    6471   title = {Rotated Wedge Averaging Method for Junction Characterization},
    6472   booktitle = {Proc. Computer Society Conference on Computer Vision and Pattern Recognition, CVPR'98, Santa Barbara, USA},
    6473   pages = {390--395},
    6474   author = {Yu, W. and Daniilidis, K. and Sommer, G.}
    6475 }
    6476 @book{Klotzek,
    6477   year = {1994},
    6478   title = {{Einf\"uhrung} in die Differentialgeometrie},
    6479   address = {Thun, Frankfurt am Main},
    6480   publisher = {Verlag Harri Deutsch},
    6481   author = {Benno Klotzek}
    6482 }
    6483 @article{Sprague2005,
    6484   number = {2},
    6485   year = {2005},
    6486   title = {{FRAP} analysis of binding: proper and fitting},
    6487   pages = {84-91},
    6488   journal = {Trends in Cell Biology},
    6489   volume = {15},
    6490   author = {Sprague, B.L. and McNally, J.G.}
    6491 }
    6492 @article{Maragos1994,
    6493   number = {1},
    6494   year = {1994},
    6495   title = {Morphological Systems: Slope Transforms and Max-Min Difference and Differential Equations},
    6496   pages = {57-77},
    6497   journal = {Signal Processing},
    6498   volume = {38},
    6499   author = {Maragos, Petros}
    6500 }
    6501 @article{Sprague2004,
    6502   month = {June},
    6503   year = {2004},
    6504   title = {Analysis of Binding Reactions by Fluorescence Recovery after Photobleaching},
    6505   pages = {3473-3495},
    6506   journal = {Biophysical Journal},
    6507   volume = {86},
    6508   author = {Sprague, B.L. and Pego, R.L. and Stavreva, D.A. and McNally, J.G.}
    6509 }
    6510 @phdthesis{Westerweel1993,
    6511   year = {1993},
    6512   title = {Digital particle image velocimetry - theory and application},
    6513   address = {Delft, The Netherlands},
    6514   school = {Delft University of Technology},
    6515   author = {Westerweel, J.}
    6516 }
    6517 @article{Marek2005,
    6518   number = {2},
    6519   year = {2005},
    6520   title = {Interactive Measurement and Characterization of {DNA} Molecules by Analysis of {AFM} Images},
    6521   pages = {87-93},
    6522   journal = {Cytometry Part A},
    6523   volume = {63},
    6524   author = {Marek, J. and Demj\'enov\'a and Tomori, Z. and Jan\'a\v{c}ek, J. and Zolotov\'a, I. and Valle, F. and Farve, M. and Dietler, G.}
    6525 }
    6526 @book{Smith2000,
    6527   edition = {thrid},
    6528   year = {2000},
    6529   title = {Modern Optical Engenering},
    6530   address = {New York},
    6531   publisher = {McGraw-Hill},
    6532   author = {Smith, W.J.}
    6533 }
    6534 @article{Nirmal1996,
    6535   number = {6603},
    6536   year = {1996},
    6537   title = {Fluorescience intermittency in single cadmium selenide nanocrystals},
    6538   pages = {802-805},
    6539   journal = {Nature},
    6540   volume = {383},
    6541   author = {Nirmal, M. and Dabbausi, B.O. and Bawendi, M.G. and Macklin, J.J. and Trautman, J.K. and Harris, T.D. and Brus, L.E.}
    6542 }
    6543 @article{Grillo2006,
    6544   year = {2006},
    6545   title = {A novel method for focus assessment in atomic resolution {STEM HAADF} experiments},
    6546   pages = {603-613},
    6547   journal = {Ultramicrosocpy},
    6548   volume = {106},
    6549   author = {Grillo, V. and Carlino, E.}
    6550 }
    6551 @article{Heine1961,
    6552   number = {1},
    6553   year = {1961},
    6554   title = {Eine verfeinerte {Theorie} der {R\"ontgenkleinwinkelstreuung} des {verkn\"auelten} {Fadenmolek\"uls} und ihre {Anwendung} auf {Cellulosenitrat} in {L\"o}sung},
    6555   pages = {682-726},
    6556   journal = {Macromolecular Chemistry and Physics},
    6557   volume = {44},
    6558   author = {Heine, S. von and Kratky, O. and Porod, G. and Schmitz, P.J.}
    6559 }
    6560 @incollection{Hilditch1969,
    6561   year = {1969},
    6562   title = {Linear skeletons from square cupboards},
    6563   booktitle = {Machine Intelligence},
    6564   pages = {404--420},
    6565   editor = {{Meltzer B. and Mitchie D.}},
    6566   publisher = {University Press Edinburgh},
    6567   author = {Hilditch, C.J.}
    6568 }
    6569 @article{Subramaniam2003,
    6570   year = {2003},
    6571   title = {Photophysics of green and red fluorescent proteins: some implications for quantitative microscopy},
    6572   pages = {178-201},
    6573   journal = {Methods in Enzymology.},
    6574   volume = {360},
    6575   author = {Subramaniam, V. and Hanley, Q.S. and Clayton, A.H.A. and Jovin, T.M.}
    6576 }
    6577 @article{Brink1998a,
    6578   year = {1998},
    6579   title = {Evaluation of charing on macromolecules in electron mircoscopy},
    6580   pages = {41-52},
    6581   journal = {Ultamicroscopy},
    6582   volume = {72},
    6583   author = {Brink, J. and Sherman, M.B. and Berrniman, J. and Chiu, W.}
    6584 }
    6585 @inproceedings{Ginkel1997,
    6586   month = {June 9-11},
    6587   year = {1997},
    6588   title = {Orientation Selectivity for Orientation Estimation},
    6589   booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)},
    6590   pages = {533--537},
    6591   volume = {I},
    6592   author = {Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van}
    6593 }
    6594 @mastersthesis{Ginkel1995,
    6595   month = {August},
    6596   year = {1995},
    6597   title = {Diffusion Generated Scale-space for Blob Analysis},
    6598   address = {Delft, The Netherlands},
    6599   school = {Delft University of Technology},
    6600   author = {Ginkel, M. van}
    6601 }
    6602 @inproceedings{Ginkel1998,
    6603   month = {June 9-11},
    6604   year = {1998},
    6605   title = {Curvature Estimation for Overlapping Curved Patterns using Orientation Space},
    6606   booktitle = {Proceedings of the third annual conference of the Advanced School for Computing and Imaging (Lommel, Belgium)},
    6607   pages = {173--178},
    6608   editor = {Haar Romeny, B. ter and Epema, D.H.J. and Tonino, J.F.M.},
    6609   author = {Ginkel, M. van and Verbeek, P.W. and van Vliet, L.J.}
    6610 }
    6611 @inproceedings{Ginkel1999,
    6612   month = {June 7-11},
    6613   year = {1999},
    6614   title = {Curvature Estimation from Orientation Fields},
    6615   booktitle = {SCIA'99, Proc. 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland)},
    6616   pages = {545--551},
    6617   editor = {Ersboll, B.K. and Johansen, P.},
    6618   author = {Ginkel, M. van and Weijer, J. van de and Verbeek, P.W. and Vliet, L.J. van},
    6619   organization = {Pattern Recognition Society of Denmark, Lyngby}
    6620 }
    6621 @inproceedings{Bakker1999a,
    6622   year = {1999},
    6623   title = {Edge preserving orientation adaptive filtering},
    6624   booktitle = {ASCI'99, Proc. 5th Annual Conference of the Advanced School for C omputing and Imaging (Heijen, The Netherlands)},
    6625   pages = {207--213},
    6626   editor = {Boasson, M. and Kaandorp, J.A. and Tonino, J.F.M. and Vosselman, M.G.},
    6627   author = {Bakker, P. and Verbeek, P.W. and Vliet, L.J. van},
    6628   organization = {ASCI, Delft}
    6629 }
    6630 @article{Mecke1996,
    6631   number = {5},
    6632   month = {May},
    6633   year = {1996},
    6634   title = {Morphological Characterization of Patterns in Reaction-Diffusion Systems},
    6635   pages = {4794--4800},
    6636   journal = {Physical Review {E}},
    6637   volume = {53},
    6638   author = {Mecke, K.R.}
    6639 }
    6640 @article{Lawton1992,
    6641   number = {3},
    6642   month = {July},
    6643   year = {1992},
    6644   title = {Multidimensional Chirp Algorithms for Computing {Fourier} Transforms},
    6645   pages = {429--431},
    6646   journal = {IEEE Transactions on Image Processing},
    6647   volume = {1},
    6648   annote = {key_fft},
    6649   author = {Lawton, W.M.}
    6650 }
    6651 @article{Pratt1972,
    6652   year = {1972},
    6653   title = {Generalized {Wiener} filtering computation techniques},
    6654   pages = {297--303},
    6655   journal = {IEEE Trans. Comput.},
    6656   volume = {C-21},
    6657   author = {Pratt, W.K.}
    6658 }
    6659 @article{Zhu2004,
    6660   year = {2004},
    6661   title = {Automatic particle selection: results of a comparative study},
    6662   pages = {3-14},
    6663   journal = {Journal of Structural Biology},
    6664   volume = {145},
    6665   author = {Zhu, Y. and Carragher, B. and Glaeser, R.M. and Fellmann, D. and Bajaj, C. and Bern, M. and Mouche, F. and Haas, F. de and Hall, R.J. and Kriegman, D.J. and Ludtke, S.J. and Mallick, S.P. and Penczek, P.A. and Roseman, A.M. and Sigworth, F.J. and Volkmann, N. and Potter, C.S.}
    6666 }
    6667 @article{Breen1996a,
    6668   number = {3},
    6669   year = {1996},
    6670   title = {Attribute Openings, Thinnings, and Granulometries},
    6671   pages = {377-389},
    6672   journal = {Computer Vision and Image Understanding},
    6673   volume = {64},
    6674   author = {Breen, E. J. and Jones, R.}
    6675 }
    6676 @article{Funaro2003,
    6677   number = {4},
    6678   year = {2003},
    6679   title = {Independent component analysis for artefact separation in astrophysical images},
    6680   pages = {469-478},
    6681   journal = {Neural Networks},
    6682   volume = {16},
    6683   author = {Funaro, M. and Oja, E. and Valpula, H.}
    6684 }
    6685 @article{Lehmann1997,
    6686   year = {1997},
    6687   title = {A Simple Parametric Equation for Pseudocoloring Grey Scale Images Keeping their Original Brightness Progression},
    6688   pages = {251--257},
    6689   journal = {Image and Vision Computing},
    6690   volume = {15},
    6691   author = {Lehmann, T.M. and Kaser, A. and Repges, R.}
    6692 }
    6693 @inproceedings{Michaelis1994,
    6694   month = {May},
    6695   year = {1994},
    6696   title = {Junction Classification by Multiple Orientation Detection},
    6697   booktitle = {ECCV'94, Third European Conference on Computer Vision},
    6698   pages = {101--108},
    6699   editor = {Eklundh, Jan-Olof},
    6700   address = {Stockholm, Sweden},
    6701   author = {Michaelis, M. and Sommer, G.}
    6702 }
    6703 @article{Ginneken2000,
    6704   number = {2},
    6705   year = {2000},
    6706   title = {Applications of Locally Orderless Images},
    6707   pages = {196--208},
    6708   journal = {Journal of Visual Communication and Image Representation},
    6709   volume = {11},
    6710   author = {Ginneken, B. van and Haar Romeny, B.M. ter}
    6711 }
    6712 @article{Michaelis1995,
    6713   year = {1995},
    6714   title = {A Lie Group Approach to Steerable Filters},
    6715   pages = {1165--1174},
    6716   journal = {Pattern Recognition Letters},
    6717   volume = {16},
    6718   author = {Michaelis, M. and Sommer, G.}
    6719 }
    6720 @article{Brink1998,
    6721   number = {1},
    6722   year = {1998},
    6723   title = {Reduction of charging in protein electron cryomicroscopy},
    6724   pages = {67-73},
    6725   journal = {Journal of Microscopy},
    6726   volume = {191},
    6727   author = {Brink, J. and Gross, H. and Tittmann, P. and Sherman, M.B. and Chiu, W.}
    6728 }
    6729 @article{Cowley1986,
    6730   year = {1966},
    6731   title = {Greatly defocused, point-projection, off-axis electron holographyy},
    6732   pages = {133-147},
    6733   journal = {Ultramicroscopy},
    6734   volume = {63},
    6735   author = {Cowley, J.M. and Mankos, M. and Scheinfein, M.R.}
    6736 }
    6737 @article{Hutchison2005,
    6738   year = {2005},
    6739   title = {A versatile double aberration-corrected, energy filtered {HREM/STEM} for materials science},
    6740   pages = {7-15},
    6741   journal = {Ultramicroscopy},
    6742   volume = {103},
    6743   author = {Hutchison, J.L. and Titchmarsh, J.M. and Cockayne, D.J.H. and Doole, R.C. and Hetherington, C.J.D. and Kirkland, A.I. and Sawada, H.}
    6744 }
    6745 @article{Bergholm1987,
    6746   number = {6},
    6747   month = {November},
    6748   year = {1987},
    6749   title = {Edge Focusing},
    6750   pages = {726--741},
    6751   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6752   volume = {9},
    6753   author = {Bergholm, F.}
    6754 }
    6755 @article{Axelrod1989,
    6756   year = {1989},
    6757   title = {Fluorescence Polarization Microscopy},
    6758   pages = {333-352},
    6759   journal = {Methods in Cell Biology},
    6760   volume = {30},
    6761   author = {Axelrod, D.}
    6762 }
    6763 @article{Heideman1992,
    6764   number = {1},
    6765   month = {January},
    6766   year = {1992},
    6767   title = {Computation of an Odd-Length DCT from a Real-Valued DFT of the Same Length},
    6768   pages = {54--61},
    6769   journal = {IEEE Transactions on Signal Processing},
    6770   volume = {40},
    6771   annote = {key_fft},
    6772   author = {Heideman, M.T.}
    6773 }
    6774 @article{Nagao1979,
    6775   year = {1979},
    6776   title = {Edge Preserving Smoothing},
    6777   pages = {394--407},
    6778   journal = {Computer Graphics and Image Processing},
    6779   volume = {9},
    6780   author = {Nagao, M. and Matsuyama, T.}
    6781 }
    6782 @article{Aguado2000,
    6783   number = {1},
    6784   year = {2000},
    6785   title = {Bias Error Analysis of the Generalised {Hough} Transform},
    6786   pages = {25--42},
    6787   journal = {Journal of Mathematical Imaging and Vision},
    6788   volume = {12},
    6789   author = {Aguado, A.S. and Montiel, E. and Nixon, M.S.}
    6790 }
    6791 @article{Lin2000,
    6792   month = {221-231},
    6793   year = {2000},
    6794   title = {Pore Structure and network analysis of filter cake},
    6795   journal = {Chemical Engineering Journal},
    6796   volume = {80},
    6797   author = {Lin, C.L. and Miller, J.D.}
    6798 }
    6799 @phdthesis{Lin2003,
    6800   year = {2003},
    6801   title = {Enhancement, Extraction, and Visualization of {3D} Volume Data},
    6802   school = {{Link\"oping University}, Sweden},
    6803   author = {Lin, Q.}
    6804 }
    6805 @article{Jackway1996,
    6806   number = {1},
    6807   month = {January},
    6808   year = {1996},
    6809   title = {Scale-Space Properties of the Multiscale Morphological Dilation-Erosion},
    6810   pages = {38--51},
    6811   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6812   volume = {18},
    6813   author = {Jackway, Paul T. and Deriche, Mohamed}
    6814 }
    6815 @article{Sederberg1984,
    6816   number = {1},
    6817   year = {1984},
    6818   title = {Implicit Representation of Parametric Curves and Surfaces},
    6819   pages = {72--84},
    6820   journal = {Computer Vision, Graphics, and Image Processing},
    6821   volume = {28},
    6822   author = {Sederberg, T.W. and Anderson, D.C. and Goldman, R.N.}
    6823 }
    6824 @article{Jackway1998,
    6825   number = {3},
    6826   year = {1998},
    6827   title = {On the Scale-Space Theorem of Chen and Yan},
    6828   pages = {351-352},
    6829   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6830   volume = {20},
    6831   author = {Jackway, Paul T.}
    6832 }
    6833 @article{Zimmermann2002,
    6834   number = {2},
    6835   year = {2002},
    6836   title = {Spectral imaging and linear un-mixing enables improved {FRET} effciency with a novel {GFP2-YFP FRET} pair},
    6837   pages = {245-249},
    6838   journal = {FEBS Letters},
    6839   volume = {531},
    6840   author = {Zimmermann, T. and Rietdorf, J. and Girod, A. and Georget, V. and Pepperkok, R.}
    6841 }
    6842 @article{Zimmermann2003,
    6843   number = {1},
    6844   year = {2003},
    6845   title = {Spectral imaging and its application in live cell microscopy},
    6846   pages = {87-92},
    6847   journal = {FEBS Letters},
    6848   volume = {546},
    6849   author = {Zimmermann, T. and Rietdorf, J. and Pepperkok, R.}
    6850 }
    6851 @article{Fischl1999,
    6852   number = {NO. 1},
    6853   year = {1999},
    6854   title = {Adaptive Nonlocal Filtering: A Fast Alternative to Anisotropic Diffusion for Image Enhancement},
    6855   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6856   volume = {VOL. 21},
    6857   author = {Fischl, B. and Schwartz, E.L.}
    6858 }
    6859 @article{Reed1990,
    6860   number = {1},
    6861   month = {January},
    6862   year = {1990},
    6863   title = {Segmentation of Textured Images and Gestalt Organization Using Spatial/Spatial-Frequency Representations},
    6864   pages = {1--12},
    6865   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6866   volume = {12},
    6867   author = {Reed, T.R. and Wechsler, H.}
    6868 }
    6869 @article{Reed1999,
    6870   month = {August},
    6871   year = {1999},
    6872   title = {Stereological Estimation of Covariance using Linear Dipole Probes},
    6873   pages = {96--103},
    6874   journal = {Journal of Microscopy},
    6875   volume = {195, Pt 2},
    6876   author = {Reed, M.G. and Howard, C.V.}
    6877 }
    6878 @article{Hell1994a,
    6879   number = {11},
    6880   year = {1994},
    6881   title = {Breaking the diffraction limit resolution by stimulated emission: stimulated-emission-depletion microscopy},
    6882   pages = {780-783},
    6883   journal = {Optics Letters},
    6884   volume = {19},
    6885   author = {Hell, S. W. and Wichmann, J.}
    6886 }
    6887 @article{Nicholson2001,
    6888   year = {2001},
    6889   title = {Review: Automatic Particle Detection in Electron Microscopy},
    6890   pages = {90-101},
    6891   journal = {Journal of Structural Biology},
    6892   volume = {133},
    6893   author = {Nicholson, W.V. and Glaser, R.M.}
    6894 }
    6895 @inproceedings{Glas2001,
    6896   series = {Lecture Notes on Computer Science},
    6897   year = {2001},
    6898   title = {Assessment of Center of Rotation of the Glenohumeral Joint by a Modified {H}ough Transform},
    6899   booktitle = {4th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001, Utrecht, The Netherlands},
    6900   editor = {Niessen, W.J. and Viergever, M.A.},
    6901   volume = {2208},
    6902   annote = {key_radon},
    6903   author = {Glas, M. van der and Vos, F.M. and Vossepoel, A.M.}
    6904 }
    6905 @article{Danielsson2001,
    6906   year = {2001},
    6907   title = {Efficient Detection of Second-Degree Variations in {2D} and {3D} Images},
    6908   pages = {255--305},
    6909   journal = {Journal of Visual Communication and Image Representation},
    6910   volume = {12},
    6911   author = {Danielsson, P.-E. and Lin, Q. and Ye, Q.-Z.}
    6912 }
    6913 @article{Dirac1927,
    6914   year = {1927},
    6915   title = {The Physical Interpretation of the Quantum Dynamics},
    6916   pages = {621-641},
    6917   journal = {Proceedings of the Royal Society of London},
    6918   volume = {A113},
    6919   author = {Dirac, P.}
    6920 }
    6921 @techreport{Danielsson2000,
    6922   month = {October},
    6923   year = {2000},
    6924   title = {A New Shape Space for Second Order 3D-Variations},
    6925   note = {LiTH-ISY-R-2299},
    6926   institution = {{Link\"oping} University, Sweden},
    6927   author = {Danielsson,P.-E. and Lin, Q.}
    6928 }
    6929 @article{Otten1993,
    6930   year = {1993},
    6931   title = {High-resolution imaging on a field emission {TEM}},
    6932   pages = {77-91},
    6933   journal = {Ultramicroscopy},
    6934   volume = {48},
    6935   author = {Otten, M.T. and Coene, W.M.J.}
    6936 }
    6937 @article{Nelson2006,
    6938   year = {2006},
    6939   title = {Tethered Particle Motion as a Diagnostic of {DNA} Tether Length},
    6940   journal = {Journal of Physical Chemistry B},
    6941   author = {Nelson, P.C. and Zurla, C. and Brogioli, D. and Beausang, J.F. and Finzi, L. and Dunlap, D.}
    6942 }
    6943 @article{Ballester2001,
    6944   number = {8},
    6945   month = {August},
    6946   year = {2001},
    6947   title = {Filling-In by Joint Interpolation of Vector Fields and Gray Levels},
    6948   pages = {1200--1211},
    6949   journal = {IEEE Transactions on Image Processing},
    6950   volume = {10},
    6951   author = {Ballerster, C. and Bertalmio, M. and Caselles, V. and Sapiro, G. and Verdera, J.}
    6952 }
    6953 @inbook{Kohonen1995a,
    6954   series = {Springer Series in Information Sciences},
    6955   year = {1995},
    6956   title = {Self-Organizing Maps},
    6957   volume = {30},
    6958   chapter = {5.8--5.10},
    6959   publisher = {Springer-Verlag},
    6960   author = {Kohonen, T.}
    6961 }
    6962 @article{Saff1997,
    6963   number = {1},
    6964   year = {1997},
    6965   title = {Distributing Many Points on a Sphere},
    6966   pages = {5--11},
    6967   journal = {the Mathematical Intelligencer},
    6968   volume = {19},
    6969   author = {Saff, E.B. and Kuijlaars, A.B.J.}
    6970 }
    6971 @article{Johansen2000,
    6972   number = {3},
    6973   year = {2000},
    6974   title = {Branch Points in One-Dimensional {Gaussian} Scale Space},
    6975   pages = {193--203},
    6976   journal = {Journal of Mathematical Imaging and Vision},
    6977   volume = {13},
    6978   author = {Johansen, P. and Nielsen, M. and Olsen, O.F.}
    6979 }
    6980 @techreport{Lieshout1997,
    6981   year = {1997},
    6982   title = {Size Distributions in Stochastic Geometry},
    6983   note = {PNA-R9715},
    6984   institution = {CWI, Amsterdam},
    6985   author = {Lieshout, M.N.M. van}
    6986 }
    6987 @article{Raven1998,
    6988   number = {8},
    6989   year = {1998},
    6990   title = {Numerical Removal of Ring Artefacts in Microtomography},
    6991   pages = {2978--2980},
    6992   journal = {Review of Scientific Instruments},
    6993   volume = {69},
    6994   author = {Raven, C.}
    6995 }
    6996 @book{Spivak1965,
    6997   year = {1965},
    6998   title = {Calculus on Manifolds},
    6999   address = {Cambridge, MA},
    7000   publisher = {Perseus Books},
    7001   author = {Spivak, M.}
    7002 }
    7003 @article{Prabhat2004,
    7004   number = {4},
    7005   year = {2004},
    7006   title = {Simultaneous imaging of different focal planes in fluorescence microscopy for the study of cellular dynamics in three dimensions},
    7007   pages = {237-242},
    7008   journal = {IEEE Transactions on Nanobioscience},
    7009   volume = {3},
    7010   author = {Prabhat, P. and Ram, S. and Ward, E.S. and Ober, R.J.}
    7011 }
    7012 @article{Meijster2002,
    7013   number = {4},
    7014   month = {April},
    7015   year = {2002},
    7016   title = {A Comparison of Algorithms for Connected Set Openings and Closings},
    7017   pages = {484--494},
    7018   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7019   volume = {24},
    7020   author = {Meijster, Arnold and Wilkinson, Michael H.F.}
    7021 }
    7022 @article{Venkatesh1990,
    7023   month = {May},
    7024   year = {1990},
    7025   title = {On the Classification of Image Features},
    7026   pages = {339--349},
    7027   journal = {Pattern Recognition Letters},
    7028   volume = {11},
    7029   author = {Venkatesh, S. and Owens, R.}
    7030 }
    7031 @article{Nummiaro2002,
    7032   number = {1},
    7033   year = {2003},
    7034   title = {An Adaptive Color-Based Particle Filter},
    7035   pages = {99-110},
    7036   journal = {Image and Vision Computing},
    7037   volume = {21},
    7038   author = {Nummiaro, K. and Koller-Meier, E. and Gool, L. van}
    7039 }
    7040 @mastersthesis{Asselt1997,
    7041   year = {1997},
    7042   title = {Line and Edge Characterisation Using Mallat Wavelets},
    7043   address = {Delft},
    7044   school = {Pattern Recognition Group, Faculty of Applied Physics, Delft University of Technology},
    7045   author = {Asselt, R.J. van}
    7046 }
    7047 @article{Grecco2005,
    7048   number = {3},
    7049   year = {2004},
    7050   title = {Ensemble and single particle photophysical properties (two-photon excitation, anisotropy, {FRET}, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells},
    7051   pages = {169-179},
    7052   journal = {Microscopy Research and Technique},
    7053   volume = {65},
    7054   author = {Grecco, H. and Lidke, K.A. and Heintzmann, R. and Lidke, D.S. and Spagnuolo, C. and Martinez, O.E. and Jares-Erijman, E.A. and Jovin, T.M.}
    7055 }
    7056 @article{Goshtasby1994,
    7057   number = {4},
    7058   month = {May},
    7059   year = {1994},
    7060   title = {On Edge Focusing},
    7061   pages = {247--256},
    7062   journal = {Image and Vision Computing},
    7063   volume = {12},
    7064   author = {Goshtasby, A.}
    7065 }
    7066 @article{Kadyrov2001,
    7067   number = {8},
    7068   year = {2001},
    7069   title = {The Trace transform and its applications },
    7070   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7071   volume = {23},
    7072   annote = {key_radon},
    7073   author = {Kadyrov, A. and Petrou, M. }
    7074 }
    7075 @misc{Vliet2003,
    7076   month = {May},
    7077   year = {2003},
    7078   howpublished = {private communications},
    7079   author = {Vliet, L.J. van and Rieger, B.}
    7080 }
    7081 @article{Harscher1996,
    7082   year = {1996},
    7083   title = {Experimental study of amplitude and phase detection limits in electron holography},
    7084   pages = {57-66},
    7085   journal = {Ultramicroscopy},
    7086   volume = {64},
    7087   author = {Harscher, A. and Lichte, H.}
    7088 }
    7089 @inproceedings{Vliet2004,
    7090   month = {Cambridge, UK, August 23-26},
    7091   year = {2004},
    7092   title = {Robust Local Max-Min Filters by Normalized Power-Weighted Filtering},
    7093   booktitle = {ICPR17, Proceedings 17th International Conference on Pattern Recognition},
    7094   pages = {696-699},
    7095   editor = {Kittler,J. and Petrou, M. and Nixon, M.},
    7096   address = {Los Alamitos},
    7097   publisher = {IEEE Computer Society Press},
    7098   author = {Vliet, L.J. van}
    7099 }
    7100 @inproceedings{Knutsson1983b,
    7101   month = {October},
    7102   year = {1983},
    7103   title = {Texture Analysis using Two-Dimensional Quadrature Filters},
    7104   booktitle = {IEEE Computer Society Workshop on Computer Architecture for Pattern Analysis and Image Database Management},
    7105   address = {Pasadena},
    7106   author = {Knutsson, H. and Granlund, G.H.}
    7107 }
    7108 @article{Knutsson1983a,
    7109   number = {3},
    7110   month = {March},
    7111   year = {1983},
    7112   title = {Anisotropic Non-Stationary Image Estimation and its Applications --- {P}art {II}: {P}redictive Image Coding},
    7113   pages = {398--406},
    7114   journal = {IEEE Transactions on Communications},
    7115   volume = {31},
    7116   author = {Knutsson, H. and Wilson, R. and Granlund, G.H.}
    7117 }
    7118 @article{Vakman1996,
    7119   number = {4},
    7120   month = {April},
    7121   year = {1996},
    7122   title = {On the Analytic Signal, the {Teager--Kaiser} Energy Algorithm, and Other Methods for Defining Amplitude and Frequency},
    7123   pages = {791--797},
    7124   journal = {IEEE Transactions on Signal Processing},
    7125   volume = {44},
    7126   author = {Vakman, D.}
    7127 }
    7128 @article{Jepson1991,
    7129   number = {5},
    7130   month = {October},
    7131   year = {1991},
    7132   title = {Phase Singularities in Scale-space},
    7133   pages = {338--343},
    7134   journal = {Image and Vision Computing},
    7135   volume = {9},
    7136   author = {Jepson, A.D. and Fleet, D.J.}
    7137 }
    7138 @article{Hanley1999,
    7139   number = {53},
    7140   year = {1999},
    7141   title = {Spectral imaging in a programmable array microscope by Hadamard transform fluorescence spectroscopy},
    7142   pages = {1-10},
    7143   journal = {Applied Spectroscopy},
    7144   author = {Hanley, Q.S. and Verveer, P.J. and Jovin, T.M.}
    7145 }
    7146 @inproceedings{Jepson1990,
    7147   year = {1990},
    7148   title = {Scale-Space Singularities},
    7149   booktitle = {Computer Vision -- ECCV90. Proceedings, 1990},
    7150   pages = {50--55},
    7151   editor = {O. Faugeras},
    7152   publisher = {Springer-Verlag},
    7153   author = {Jepson, A.D. and Fleet, D.J.}
    7154 }
    7155 @article{Jones1996,
    7156   number = {10},
    7157   year = {1996},
    7158   title = {Periodic Lines: Definition, Cascades, and Application to Granulometries},
    7159   pages = {1057--1063},
    7160   journal = {Pattern Recognition Letters},
    7161   volume = {17},
    7162   author = {Jones, Ronald and Soille, Pierre}
    7163 }
    7164 @inproceedings{Rutovitz1968,
    7165   year = {1968},
    7166   title = {Datastructures for operations on digital images},
    7167   booktitle = {Pictorial Pattern Recognition},
    7168   pages = {105--133},
    7169   editor = {Cheng, G.C. and Ledley, R.S. and Pollock, D.K. and Rosenfeld, A.},
    7170   address = {Washington, DC},
    7171   publisher = {Thompson},
    7172   author = {Rutovitz, D.}
    7173 }
    7174 @inproceedings{Lucas1981,
    7175   month = {August},
    7176   year = {1981},
    7177   title = { An Iterative Image Registration Technique with an Application to Stereo Vision},
    7178   booktitle = {Proceedings of the Seventh Int. Conf. on Artificial Intelligence},
    7179   pages = {674--679},
    7180   editor = {P.J. Hayes},
    7181   address = {Vancouver, B.C., Canada},
    7182   publisher = {William Kaufmann},
    7183   author = {Lucas, B.D. and Kanade, T.}
    7184 }
    7185 @phdthesis{Toft1996,
    7186   month = {June},
    7187   year = {1996},
    7188   title = {The Radon Transform - Theory and Implementation},
    7189   address = {Department of Mathematical Modeling, Denmark},
    7190   annote = {key_radon},
    7191   school = {Technical University of Denmark},
    7192   author = {Toft, P.}
    7193 }
    7194 @article{Sapiro1993,
    7195   number = {9},
    7196   year = {1993},
    7197   title = {Implementing Continuous-Scale Morphology via Curve Evolution},
    7198   pages = {1363--1372},
    7199   journal = {Pattern Recognition},
    7200   volume = {26},
    7201   author = {Sapiro, G. and Kimmel, R. and Shaked, D. and Kimia, B. and Bruckstein, A.M.}
    7202 }
    7203 @article{Kanmani1993,
    7204   month = {April},
    7205   year = {1993},
    7206   title = {On the Computation of the Minkowski Dimension using Morphological Operations},
    7207   pages = {81--85},
    7208   journal = {Journal of Microscopy},
    7209   volume = {170, Pt 1},
    7210   author = {Kanmani, S. and Babu Rao, C. and Raj, B.}
    7211 }
    7212 @article{Zhao2004,
    7213   year = {2004},
    7214   title = {Morphological variation of individual Escherichia coli {50S} ribosomal subunits in situ, as revealed by cryo-electron tomography},
    7215   pages = {190-201},
    7216   journal = {Experimental Cell Research},
    7217   volume = {300},
    7218   author = {Zhao, Q. and {\"Ofverstedt}, L.-G. and Skoglund, U. and Isaksson, L.A.}
    7219 }
    7220 @article{Yeong1988a,
    7221   number = {1},
    7222   month = {July},
    7223   year = {1998},
    7224   title = {Reconstructing random media. {II}. Three-dimensional media from two-dimensional cuts},
    7225   journal = {Physical Review E},
    7226   volume = {58},
    7227   author = {Yeong, C.L.Y. and Torquato, S.}
    7228 }
    7229 @article{Geraets1998,
    7230   number = {2},
    7231   year = {1998},
    7232   title = {The Radiographic Trabecular Pattern of Hips in Patients with Hip Fractures and in Elderly Control Subjects},
    7233   pages = {165--173},
    7234   journal = {Bone},
    7235   volume = {22},
    7236   author = {Geraets, W.G.M. and Stelt, P.F. van der and Lips, P. and Ginkel, F.C. van}
    7237 }
    7238 @article{Rodriguez2000,
    7239   year = {2000},
    7240   title = {Origins of Illusory Percepts in Digital Images},
    7241   pages = {2007--2017},
    7242   journal = {Pattern Recognition},
    7243   volume = {33},
    7244   author = {Rodriguez-Sanchez, R. and Garcia, J.A. and Fdez-Valdivia, J. and Fdez-Valdivia, X.R.}
    7245 }
    7246 @book{Lenz1990,
    7247   year = {1990},
    7248   title = {Group Theoretical Methods in Image Processing},
    7249   publisher = {Springer-Verlag},
    7250   author = {Lenz, R.}
    7251 }
    7252 @phdthesis{Geraets1994,
    7253   year = {1994},
    7254   title = {Computer Aided Analysis of the Radiographic Trabecular Pattern},
    7255   address = {Amsterdam, The Netherlands},
    7256   school = {Vrije Universiteit Amsterdam},
    7257   author = {Geraets, W.G.M.}
    7258 }
    7259 @article{Grossmann1984,
    7260   year = {1984},
    7261   title = {Decomposition of {Hardy} functions into square integrable wavelets of constant shape},
    7262   pages = {723--736},
    7263   journal = {SIAM Journal of Mathematics},
    7264   volume = {15},
    7265   author = {Grossmann, A. and Morlet, J.}
    7266 }
    7267 @misc{Poynton1999,
    7268   year = {1999},
    7269   title = {Frequently Asked Questions about Color},
    7270   howpublished = {{\tt http://www.inforamp.net/~poynton}},
    7271   author = {Poynton, C.}
    7272 }
    7273 @book{Matheron1967,
    7274   year = {1967},
    7275   title = {Elements pour une Theorie des Milieux Poreux},
    7276   address = {Paris},
    7277   publisher = {Masson},
    7278   author = {Matheron, G.}
    7279 }
    7280 @article{Xu2003,
    7281   number = {5},
    7282   year = {2003},
    7283   title = {Curvature Computations of 2-manifolds in $\sR^k$},
    7284   pages = {681 -- 688},
    7285   journal = {Journal of Computational Mathematics},
    7286   volume = {21},
    7287   author = {Xu, G. and Bajaj, C.L.}
    7288 }
    7289 @article{Xu2001,
    7290   number = {9},
    7291   year = {2001},
    7292   title = {Efficient morphological shape representation with overlapping disk components },
    7293   pages = {1346 -1356},
    7294   journal = {IEEE Transactions on Image Processing},
    7295   volume = {10},
    7296   author = {Xu, J.}
    7297 }
    7298 @article{Wilson1984,
    7299   number = {6},
    7300   month = {November},
    7301   year = {1984},
    7302   title = {The Uncertainty Principle in Image Processing},
    7303   pages = {758--767},
    7304   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7305   volume = {6},
    7306   author = {Wilson, R. and Granlund, G.H.}
    7307 }
    7308 @article{Daniels1952,
    7309   year = {1952},
    7310   title = {The statistical theory of stiff chains},
    7311   pages = {290-311},
    7312   journal = {Proceedings of the Royal Society Edinburgh A},
    7313   volume = {63},
    7314   author = {Daniels, H.E.}
    7315 }
    7316 @article{Wilson1988,
    7317   number = {2},
    7318   month = {March/April},
    7319   year = {1988},
    7320   title = {Uncertainty and Inference in the Visual System},
    7321   pages = {305--312},
    7322   journal = {IEEE Transactions on Systems, Man and Cybernetics},
    7323   volume = {18},
    7324   author = {Wilson, R. and H. Knutsson, H.}
    7325 }
    7326 @article{Axelrod1976,
    7327   year = {1976},
    7328   title = {Mobility measurement by analysis of fluorescence photobleaching recovery kinetics},
    7329   pages = {1055-1069},
    7330   journal = {Biophysical Journal},
    7331   volume = {16},
    7332   author = {Axelrod, D. and Koppel, D.E. and Schlesinger, J. and Elson, E. and Webb, W.W.}
    7333 }
    7334 @article{Benes2000,
    7335   month = {October},
    7336   year = {2000},
    7337   title = {Stereological Estimation of Integral Mixed Curvature with Application},
    7338   pages = {26--31},
    7339   journal = {Journal of Microscopy},
    7340   volume = {200, Pt 1},
    7341   author = {Bene{\v s}, V. and Hlawiczkov? M. and Volen?, K.}
    7342 }
    7343 @inproceedings{Bertalmio2000,
    7344   month = {July},
    7345   year = {2000},
    7346   title = {Image Inpainting},
    7347   booktitle = {Proceedings of SIGGRAPH},
    7348   address = {New Orleans, USA},
    7349   author = {Bertalmio, M. and Sapiro, G. and Caselles, V. and Ballester, C.}
    7350 }
    7351 @article{Axelrod1979,
    7352   year = {1979},
    7353   title = {Carbocyanine dye orientation in red cell membrane studied by microscopic fluorescence polarization},
    7354   pages = {557-574},
    7355   journal = {Biophysical Journal},
    7356   volume = {26},
    7357   author = {Axelrod, D.}
    7358 }
    7359 @article{Tang1998,
    7360   number = {11},
    7361   year = {1998},
    7362   title = {Inference of Integrated Surface, Curve, and Junction Descriptions From Sparse 3D Data},
    7363   pages = {1206--1223},
    7364   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7365   volume = {20},
    7366   author = {Tang, C.K. and Medioni, G.}
    7367 }
    7368 @book{Fukunaga1972,
    7369   year = {1972},
    7370   title = {Introduction to Statistical Pattern Recognition},
    7371   address = {New York},
    7372   publisher = {Academic Press},
    7373   author = {Fukunaga, K.}
    7374 }
    7375 @article{Ahmed1974,
    7376   month = {January},
    7377   year = {1974},
    7378   title = {Discrete cosine transform},
    7379   pages = {88--93},
    7380   journal = {IEEE Transactions on Computers},
    7381   volume = {23},
    7382   annote = {key_fft},
    7383   author = {Ahmed, N. and Natarajan, T. and Rao, K.R.}
    7384 }
    7385 @article{Topf2005,
    7386   year = {2005},
    7387   title = {Structural characterization of components of protein assemblies 3 by comparative modeling and electron cryo-microscopy},
    7388   pages = {191-203},
    7389   journal = {Journal of Structural Biology},
    7390   volume = {149},
    7391   author = {Topf, M. and Baker, M.L. and John, B. and Chiu, W. and Sali, A.}
    7392 }
    7393 @book{Born1959,
    7394   edition = {6th},
    7395   year = {1980, 1977},
    7396   title = {Principles of Optics},
    7397   publisher = {Pergamon Press},
    7398   author = {Born, M. and Wolf, E.}
    7399 }
    7400 @book{Landau1969,
    7401   edition = {second},
    7402   year = {1969},
    7403   title = {Statistical Physics, Part 1},
    7404   publisher = {Pergamon Press},
    7405   author = {Landau, L.D. and Lifshitz,E.M.}
    7406 }
    7407 @article{Deegan2000,
    7408   number = {1},
    7409   year = {2000},
    7410   title = {Contact line deposits in an evaporating drop},
    7411   pages = {756--765},
    7412   journal = {Physical Review E},
    7413   volume = {62},
    7414   author = {Deegan, R.D. and Bakajin, O. and Dupont, T.F. and Huber, G. and Nagel, S.R. and Witten, T.A.}
    7415 }
    7416 @article{Abbe1873,
    7417   year = {1873},
    7418   title = {{Beitr\"age} zur Theorie des Mikroskopes und der mikroskopischen Wahrnehmung},
    7419   pages = {413-468},
    7420   journal = {Arch Mikrosk Anat},
    7421   volume = {9},
    7422   author = {Abbe, E.}
    7423 }
    7424 @article{Rocheleau2003,
    7425   year = {2003},
    7426   title = {Intrasequence {GFP} in Class {I MHC} Molecules, a Rigid Probe for Fluorescence Anisotropy Measurements of the Membrane Environment},
    7427   pages = {4078-4086},
    7428   journal = {Biophysical Journal},
    7429   volume = {84},
    7430   author = {Rocheleau, J.V. and Edidin, M. and Piston, D.W.}
    7431 }
    7432 @article{Hyvarinen1999,
    7433   number = {3},
    7434   year = {1999},
    7435   title = {Fast and Robust Fixed-Point Algorithms for Independent Component Analysis},
    7436   pages = {626-634},
    7437   journal = {IEEE Transactions on Neural Networks},
    7438   volume = {10},
    7439   author = {{Hyv\"arinen}, A.}
    7440 }
    7441 @article{Hell1995,
    7442   number = {2},
    7443   year = {1995},
    7444   title = {Two- and multiphoton detection as an imaging mode and means of increasing the resolution in far-field light microscopy: a study based on photon-optics},
    7445   pages = {64-69},
    7446   journal = {Bioimaging},
    7447   volume = {3},
    7448   author = {Hell, S.W. and Soukka, J. and {H\"anninen}, P.E.}
    7449 }
    7450 @article{Hell1994,
    7451   number = {11},
    7452   year = {1994},
    7453   title = {Measurement of the 4pi-confocal point spread function proves 75 nm axial resolution},
    7454   pages = {1335-1337},
    7455   journal = {Applied Physics Letter},
    7456   volume = {64},
    7457   author = {Hell, S.W. and Lindek, S. and Cremer, C. and Stelzer, E.H.K.}
    7458 }
    7459 @article{Hell1993,
    7460   number = {3},
    7461   year = {1993},
    7462   title = {Aberrations in confocal fluorescence microscopy induced by mismatching in refractive index},
    7463   pages = {391--405},
    7464   journal = {Journal of Microscopy},
    7465   volume = {169},
    7466   author = {Hell, S.W. and Reiner, G. and Cremer, C. and Stelzer, E.H.K.}
    7467 }
    7468 @article{Yin1994,
    7469   year = {1994},
    7470   title = {Tethered particle motion method for studying transcript elongation by a single {RNA} Polymerase Molecule},
    7471   pages = {2468-2478},
    7472   journal = {Biophysical Journal},
    7473   volume = {67},
    7474   author = {Yin, H. and Landick, R. and Gelles, J.}
    7475 }
    7476 @article{Chen1994a,
    7477   number = {12},
    7478   year = {1994},
    7479   title = {Symmetric phase only matched filtering of {Fourier-Mellin} transforms for image registration and recognition},
    7480   pages = {1156--1168},
    7481   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7482   volume = {16},
    7483   author = {Chen, Q. and Defrise, M. and Deconinck, F.}
    7484 }
    7485 @inproceedings{Boomgaard2001,
    7486   series = {Lecture Notes on Computer Science},
    7487   year = {2001},
    7488   title = {Gaussian Convolutions (Numerical Approximations Based on Interpolation)},
    7489   booktitle = {Proceedings Third International Conference on Scale-Space},
    7490   pages = {205--214},
    7491   editor = {Kerckhove, M.},
    7492   volume = {2106},
    7493   address = {Vancouver, Canada},
    7494   publisher = {Springer-Verlag},
    7495   author = {Boomgaard, R. van den and Weij, R. van der}
    7496 }
    7497 @inproceedings{Boomgaard2002,
    7498   month = {August 11-15},
    7499   year = {2002},
    7500   title = {On the equivalence of local-mode finding, robust estimation and mean-shift analysis as used in early vision tasks},
    7501   booktitle = {ICPR 2002, International Conference on Pattern Recognition},
    7502   editor = {Kasturi, R. and Laurendeau, D. and Suen, C.},
    7503   author = {Boomgaard, R. van den and Weijer, J. van de},
    7504   organization = {IEEE Computer Society}
    7505 }
    7506 @phdthesis{Lindeberg1991,
    7507   year = {1991},
    7508   title = {Discrete Scale-Space Theory and the Scale-Space Primal Sketch},
    7509   school = {Royal Institute of Technology Stockholm, Sweden},
    7510   author = {Lindeberg, T.}
    7511 }
    7512 @article{Cohen2002,
    7513   number = {6},
    7514   month = {June},
    7515   year = {2002},
    7516   title = {The {Gaussian} Watermarking Game},
    7517   pages = {1639--1667},
    7518   journal = {IEEE Transactions on Information Theory},
    7519   volume = {48},
    7520   author = {Cohen, A.S. and Lapidoth, A.}
    7521 }
    7522 @article{Lindeberg1993,
    7523   year = {1993},
    7524   title = {Discrete Derivative Approximations with Scale-space Properties: A Basis for Low-level Feature Extraction},
    7525   pages = {349--376},
    7526   journal = {Journal of Mathematical Imaging and Vision},
    7527   volume = {3},
    7528   author = {Lindeberg, T.}
    7529 }
    7530 @inbook{Davis1971,
    7531   series = {Methods in Enzymology},
    7532   year = {1971},
    7533   title = {Electron microscope heteroduplex methods for mapping regions of base sequence homology in nucleic acids},
    7534   pages = {413-428},
    7535   editor = {Grossman, L. and Moldave, K.},
    7536   volume = {21D},
    7537   address = {London},
    7538   publisher = {Academic Press},
    7539   author = {Davis, R.W. and Simon, M. and Davidson, N.}
    7540 }
    7541 @article{Cohen2005,
    7542   number = {6},
    7543   year = {2005},
    7544   title = {The history of noise},
    7545   pages = {20-45},
    7546   journal = { IEEE Signal Processing Magazine},
    7547   volume = {22},
    7548   author = {Cohen, L.}
    7549 }
    7550 @article{Lindeberg1998,
    7551   number = {2},
    7552   year = {1998},
    7553   title = {Feature Detection with Automatic Scale Selection},
    7554   pages = {79--116},
    7555   journal = {International Journal of Computer Vision},
    7556   volume = {30},
    7557   author = {Lindeberg, T.}
    7558 }
    7559 @article{Owens1994,
    7560   month = {January},
    7561   year = {1994},
    7562   title = {Feature-free Images},
    7563   pages = {35--44},
    7564   journal = {Pattern Recognition Letters},
    7565   volume = {15},
    7566   author = {Owens, R.A.}
    7567 }
    7568 @article{Lumia1983,
    7569   year = {1983},
    7570   title = {A New Connected Components Algorithm for Virtual Memory Computers},
    7571   pages = {287--300},
    7572   journal = {Computer Vision, Graphics, and Image Processing},
    7573   volume = {22},
    7574   author = {Lumia, R. and Shapiro, L. and Zuniga, O.}
    7575 }
    7576 @book{Stoyan1985,
    7577   edition = {second},
    7578   year = {1985, 1995},
    7579   title = {Stochastic Geometry and its Applications},
    7580   publisher = {John Wiley \& Sons, inc},
    7581   author = {Stoyan, D. and Kendall, W.S. and Mecke, J.}
    7582 }
    7583 @article{Patterson1997,
    7584   number = {5},
    7585   year = {1997},
    7586   title = {Use of green fluorescent protein and its mutants in quantitative fluorescence microscopy},
    7587   pages = {2782-2790},
    7588   journal = {Biophysical Journal},
    7589   volume = {73},
    7590   author = {Patterson, G.H. and Knobel, S.M. and Sharif, W.D. and Kain, S.R. and Piston, D.W.}
    7591 }
    7592 @inproceedings{Felsberg2001a,
    7593   year = {2001},
    7594   title = {Scale Adaptive Filtering Derived from the {Laplace} Equation},
    7595   booktitle = {DAGM Symposium},
    7596   note = {extended version.},
    7597   address = {{M\"unchen}, Germany},
    7598   author = {Felsberg, M. and Sommer, G.}
    7599 }
    7600 @techreport{Oktem2001,
    7601   title = {A short overview of the {COMET} (COnstrained Maximum Entropy Tomography) methodology for solving inverse problems},
    7602   author = {ktem, O.}
    7603 }
    7604 @phdthesis{Ellenberger2000,
    7605   year = {2000},
    7606   title = {Influence of defocus on measurements in microscope images },
    7607   type = {Thesis},
    7608   address = {The Netherlands},
    7609   school = {Technische Universiteit Delft},
    7610   author = {Ellenberger, S.L.}
    7611 }
    7612 @book{Poularikas1996,
    7613   year = {1996},
    7614   title = {The Transforms and Applications Handbook},
    7615   publisher = {CRC Press},
    7616   author = {Poularikas (ed), A.D.}
    7617 }
    7618 @article{Fleet1990,
    7619   year = {1990},
    7620   title = {Computation of component image velocity from local phase information},
    7621   pages = {77-104},
    7622   journal = {International Journal of Computer Vision},
    7623   volume = {5},
    7624   author = {Fleet, D.J. and Jepson, A.D.}
    7625 }
    7626 @inproceedings{Soille1998,
    7627   year = {1998},
    7628   title = {Image Structure Orientation using Mathematical Morphology},
    7629   booktitle = {Proceedings of the 14th IAPR International Conference on Pattern Recognition},
    7630   pages = {1467-1469},
    7631   editor = {Jain, A. K. and Venkatesh, S. and Lovell, B. C.},
    7632   volume = {1},
    7633   address = {Los Alamitos},
    7634   author = {Soille, P. and Talbot, H.},
    7635   organization = {IEEE Computer Society Press}
    7636 }
    7637 @article{Einstein1905a,
    7638   year = {1905},
    7639   title = {{Zur Elektro}dynamik bewegter {K\"orper}},
    7640   pages = {891-921},
    7641   journal = {Annalen der Physik},
    7642   volume = {17},
    7643   author = {Einstein, A.}
    7644 }
    7645 @article{Einstein1905b,
    7646   year = {1905},
    7647   title = {Ist die {Tr\"agheit} eines {K\"orpers} von seinem {Energieinhalt} {abh\"angig?}},
    7648   pages = {639-641},
    7649   journal = {Annalen der Physik},
    7650   volume = {18},
    7651   author = {Einstein, A.}
    7652 }
    7653 @book{Soille1999,
    7654   year = {1999},
    7655   title = {Morphological Image Analysis. Principles and Applications},
    7656   publisher = {Springer-Verlag},
    7657   author = {Soille, P.}
    7658 }
    7659 @inproceedings{Knutsson1981,
    7660   month = {August},
    7661   year = {1981},
    7662   title = {Anisotropic Filtering Operations for Image Enhancement and their Relation to the Visual System},
    7663   booktitle = {Proceedings of {IEEE} Computer Society Conference on Pattern Recognition and Image Processing},
    7664   address = {Dallas, Texas},
    7665   author = {Knutsson , H. and Wilson, R. G. and Granlund, G. H.}
    7666 }
    7667 @article{Soille1996,
    7668   number = {5},
    7669   year = {1996},
    7670   title = {Recursive Implementation of Erosions and Dilations Along Discrete Lines at Arbitrary Angles},
    7671   pages = {562-567},
    7672   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7673   volume = {18},
    7674   author = {Soille, P. and Breen, E. J. and Jones, R.}
    7675 }
    7676 @inproceedings{Spies2003,
    7677   series = {LNCS 2749},
    7678   month = {June 29 -July 2},
    7679   year = {2003},
    7680   title = {Two-Dimensional Channel Representation for Multiple Velocities},
    7681   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    7682   pages = {356-362},
    7683   editor = {{Big\"un}, J. and Gustavsson, T.},
    7684   address = {Berlin},
    7685   publisher = {Springer-Verlag},
    7686   author = {Spies, H. and Forssen, P.E.}
    7687 }
    7688 @phdthesis{Spies2001,
    7689   month = {July},
    7690   year = {2001},
    7691   title = {Analysing Dynamic Processes in Range Data Sequences},
    7692   address = {Heidelberg, Germany},
    7693   school = {Ruprechts-Karls-{Universit\"at} University},
    7694   author = {Spies, H.}
    7695 }
    7696 @article{Shapiro1978a,
    7697   year = {1978},
    7698   title = {Properties of Transforms for the Detection of Curves in Noisy Pictures},
    7699   pages = {219--236},
    7700   journal = {Computer Graphics and Image Processing},
    7701   volume = {8},
    7702   annote = {key_radon},
    7703   author = {Shapiro, S.D.}
    7704 }
    7705 @article{Schellman1980,
    7706   number = {3},
    7707   year = {1980},
    7708   title = {The flexibility of {DNA : I. Thermal} fluctuations},
    7709   pages = {321-328},
    7710   journal = {Biophysical Chemistry},
    7711   volume = {11},
    7712   author = {Schellman, J.A.}
    7713 }
    7714 @article{Klein1972,
    7715   number = {2},
    7716   year = {1972},
    7717   title = {The Texture Analyzer},
    7718   pages = {349--356},
    7719   journal = {Journal of Microscopy},
    7720   volume = {95},
    7721   author = {Klein, J.-C. and Serra, J.}
    7722 }
    7723 @article{Toffoli1997,
    7724   number = {2},
    7725   month = {March},
    7726   year = {1997},
    7727   title = {Three-Dimensional Rotations by Three Shears},
    7728   pages = {89--95},
    7729   journal = {Graphical Models and Image Processing},
    7730   volume = {59},
    7731   author = {Toffoli, T.}
    7732 }
    7733 @article{Sato2000,
    7734   number = {2},
    7735   month = {April--June},
    7736   year = {2000},
    7737   title = {Tissue Classification Based on 3{D} Local Intensity Structures for Volume Rendering},
    7738   pages = {160--179},
    7739   journal = {IEEE Transactions on Visualization and Computer Graphics},
    7740   volume = {6},
    7741   author = {Sato, Y. and Westin, C.-F. and Bhalerao, A. and Nakajima, S. and Shiraga, N. and Tamura, S. and Kikinus, R.}
    7742 }
    7743 @article{Kappers1996,
    7744   number = {2},
    7745   year = {1996},
    7746   title = {Detection of divergence in optical flow fields},
    7747   pages = {227-235},
    7748   journal = {Journal of the Optical Society of America A},
    7749   volume = {13},
    7750   author = {Kappers, A.M.L. and Pas, S.F. te and Koenderink, J.J. and Doorn, A.J van}
    7751 }
    7752 @article{Graham1997,
    7753   year = {1997},
    7754   title = {Detergent Foam Images as Analogue/Digital Model Fluids. 2. Investigation of Neighborship Partition of the Radial Distribution Function},
    7755   pages = {11212--11220},
    7756   journal = {Journal of Physical Chemistry B},
    7757   volume = {101},
    7758   author = {Graham, D.J. and Magdalinos, P. and Pimentel, D.}
    7759 }
    7760 @article{Siegmund1995,
    7761   year = {1995},
    7762   title = {Testing for a signal with unknown location and scale in a stationary Gaussian random field},
    7763   pages = {608--639},
    7764   journal = {Annals of Statistics},
    7765   volume = {23},
    7766   author = {Siegmund,D.O. and Worsley, K.J.}
    7767 }
    7768 @article{Zitova2003,
    7769   number = {11},
    7770   year = {2003},
    7771   title = {Image registration methods: a survey},
    7772   pages = {977-1000},
    7773   journal = {Image and Vision Computing},
    7774   volume = {21},
    7775   author = {{Zitov\'a}, B. and Flusser, J.}
    7776 }
    7777 @article{Balzarini2001,
    7778   year = {2001},
    7779   title = {Quantification and Description of Fracture Network by {MRI} Image Analysis},
    7780   pages = {539--541},
    7781   journal = {Magnetic Resonance Imaging},
    7782   volume = {19},
    7783   author = {Balzarini, M. and Nicula, S. and Mattiello, D. and Aliverti, E.}
    7784 }
    7785 @article{Watson1994,
    7786   number = {1},
    7787   year = {1994},
    7788   title = {Image Compression Using the Discrete Cosine Transform},
    7789   pages = {81--88},
    7790   journal = {The Mathematica Journal},
    7791   volume = {4},
    7792   author = {Watson, A.B.}
    7793 }
    7794 @article{Bradley2005,
    7795   year = {2005},
    7796   title = {An Astronomical 2175 \AA Feature in Interplanetary Dust Particles},
    7797   pages = {244-},
    7798   journal = {Science},
    7799   volume = {307},
    7800   author = {Bradley, J. and Dai Rong, Z. and Erni, R. and Browning, N. and Graham, G. and Weber, P. and Smith, J. and Hutcheon, I. and Ishii, H. and Bajt, S. and Floss, C. and Stadermann, F. and Sandford, S.}
    7801 }
    7802 @article{Coene1996,
    7803   year = {1996},
    7804   title = {Maximum-likelihood method for focus-variation image reconstruction in high resolution transmission electron microscopy},
    7805   pages = {109-135},
    7806   journal = {Ultramicroscopy},
    7807   volume = {64},
    7808   author = {Coene, W.M.J. and Thust, A. and Beeck, M. op de and Dyck, D. van}
    7809 }
    7810 @article{Bradley2004,
    7811   year = {2004},
    7812   title = {An analytical superstem for extraterrestrial materials research},
    7813   journal = {Lunar and Panetary Science},
    7814   volume = {35},
    7815   author = {Bradley, J.P. and Dia, Z.R. and Wall, M. and Erni, R. and Browning, N.}
    7816 }
    7817 @article{Morrone1987,
    7818   month = {December},
    7819   year = {1987},
    7820   title = {Feature Detection from Local Energy},
    7821   pages = {303--313},
    7822   journal = {Pattern Recognition Letters},
    7823   volume = {6},
    7824   author = {Morrone, M.C. and Owens, R.A.}
    7825 }
    7826 @inproceedings{Illers2004,
    7827   number = {1},
    7828   year = {2004},
    7829   title = {Measurement of the Detective Quantum Efficiency (DQE) of digital X-ray imaging devices according to the standard IEC 62220-1},
    7830   booktitle = {SPIE Proceedings},
    7831   pages = {177-187},
    7832   volume = {5368},
    7833   address = {Bellingham, Washington, USA},
    7834   author = {Illers, H. and Buhr, E. and Bergmann, D. and Hoeschen, C.}
    7835 }
    7836 @article{Princen1994,
    7837   number = {4},
    7838   month = {April},
    7839   year = {1994},
    7840   title = {Hypothesis Testing: A Framework for Analyzing and Optimizing {Hough} Transform Performance},
    7841   pages = {329--341},
    7842   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7843   volume = {16},
    7844   author = {Princen, J. and Illingworth, J. and Kittler, J.}
    7845 }
    7846 @phdthesis{Bakker2002,
    7847   year = {2002},
    7848   title = {Image structure analysis for seismic interpretation},
    7849   address = {The Netherlands},
    7850   school = {Delft University of Technology},
    7851   author = {Bakker, P.}
    7852 }
    7853 @article{Saxton1997,
    7854   year = {1997},
    7855   title = {Single-particle tracking: the distribution of diffusion coefficients},
    7856   pages = {1744-1753},
    7857   journal = {Biophysical Journal},
    7858   volume = {72},
    7859   author = {Saxton, M.J.}
    7860 }
    7861 @article{Princen1992,
    7862   year = {1992},
    7863   title = {A Formal Definition of the {Hough} Transform: Properties and Relationships},
    7864   pages = {153--168},
    7865   journal = {Journal of Mathematical Imaging and Vision},
    7866   volume = {1},
    7867   author = {Princen, J. and Illingworth, J. and Kittler, J.}
    7868 }
    7869 @inproceedings{Bakker2001,
    7870   month = {July 9-12},
    7871   year = {2001},
    7872   title = {Confidence and curvature estimation of curvilinear structures in {3-D}},
    7873   booktitle = {ICCV'01 (Vancouver, Canada)},
    7874   pages = {139--144},
    7875   volume = {II},
    7876   author = {Bakker, P. and Verbeek, P.W. and Vliet, L.J. van},
    7877   organization = {IEEE}
    7878 }
    7879 @book{Constantinescu1974,
    7880   year = {1974},
    7881   title = {Distributionen und ihre Anwendung in der Physik},
    7882   address = {Stuttgart},
    7883   publisher = {Teubner},
    7884   author = {Constantinescu, F.}
    7885 }
    7886 @book{Chung2001,
    7887   edition = {third},
    7888   year = {2001 (1968)},
    7889   title = {A Course in Probability Theory},
    7890   publisher = {Academic Press},
    7891   author = {Chung, K.L.}
    7892 }
    7893 @phdthesis{BOOMGAARD1992chap3,
    7894   year = {1992},
    7895   title = {Mathematical Morphology: Extensions Towards Computer Vision},
    7896   note = {Chapter 3, Dimensional Decomposition of Structuring Functions},
    7897   school = {University of Amsterdam},
    7898   author = {Boomgaard, R. van den}
    7899 }
    7900 @article{Mindell2003,
    7901   year = {2003},
    7902   title = {Accurate determination of local defocus and specimen tilt in electron microscopy},
    7903   pages = {334-347},
    7904   journal = {Journal of Structural Biology},
    7905   volume = {142},
    7906   author = {Mindell, J.A. and Grigorieff, N.}
    7907 }
    7908 @article{Chung2000,
    7909   number = {9},
    7910   month = {September},
    7911   year = {2000},
    7912   title = {On the Level Lines and Geometry of Vector-valued Images},
    7913   pages = {241--243},
    7914   journal = {IEEE Signal Processing Letters},
    7915   volume = {7},
    7916   author = {Chung, D.H. and Sapiro, G.}
    7917 }
    7918 @article{Pei1997,
    7919   month = {November},
    7920   year = {1997},
    7921   title = {An Introduction to Discrete Finite Frames},
    7922   pages = {84--96},
    7923   journal = {Signal Processing Magazine},
    7924   author = {Pei, S.-C. and Yeh, M.-H.}
    7925 }
    7926 @article{Rooms2005,
    7927   number = {1},
    7928   year = {2005},
    7929   title = {Simultaneous degradation estimation and restoration of confocal images and performance evaluation by colocalization analysis},
    7930   pages = {22-36},
    7931   journal = {Journal of Microscopy},
    7932   volume = {218},
    7933   author = {Rooms, F. and Philips, W. and Lidke, D.S.}
    7934 }
    7935 @article{Pei1994,
    7936   number = {8},
    7937   year = {1994},
    7938   title = {Using moments to acquire the motion Parameters of a deformable object without correspondence },
    7939   pages = {475--485},
    7940   journal = {Image and Vision Computing},
    7941   volume = {12},
    7942   author = {Pei, S.-C. and Liou, L.-G.}
    7943 }
    7944 @techreport{TEAMReport2000,
    7945   year = {2000},
    7946   author = {Material Science Division Argonne National Laboratory}
    7947 }
    7948 @inproceedings{Felsberg2002,
    7949   series = {Lecture Notes in Computer Science},
    7950   year = {2002},
    7951   title = {Image Features Based on a New Approach to {2D} Rotation Invariant Quadrature Filters},
    7952   booktitle = {ECCV 2002 (Copenhagen, Denmark)},
    7953   pages = {369--383},
    7954   editor = {Heyden, A. and Sparr, G. and Nielsen, M. and Johansen, P.},
    7955   volume = {2350},
    7956   publisher = {Springer Verlag},
    7957   author = {Felsberg, M. and Sommer, G.}
    7958 }
    7959 @article{Parida1998,
    7960   number = {7},
    7961   month = {July},
    7962   year = {1998},
    7963   title = {Junctions: Detection, Classification, and Reconstruction},
    7964   pages = {687--698},
    7965   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    7966   volume = {20},
    7967   author = {Parida, L. and Geiger, D. and Hummel, R.}
    7968 }
    7969 @inproceedings{Felsberg2000,
    7970   year = {2000},
    7971   title = {Structure Multivector for Local Analysis of Images},
    7972   booktitle = {Proc. Dagstuhl Workshop on Theoretical Foundations of Computer Vision},
    7973   author = {Felsberg, M. and Sommer, G.}
    7974 }
    7975 @article{Felsberg2001,
    7976   number = {12},
    7977   year = {2001},
    7978   title = {The Monogenic Signal},
    7979   pages = {3136--3144},
    7980   journal = {IEEE Transactions on Signal Processing},
    7981   volume = {49},
    7982   author = {Felsberg, M. and Sommer, G.}
    7983 }
    7984 @article{Felsberg2004,
    7985   number = {1},
    7986   year = {2004},
    7987   title = {The Monogenic Scale-Space: A Unifying Approach to Phase-Based Image Processing in Scale-Space},
    7988   pages = {5--26},
    7989   journal = {Journal of Mathematical Imaging and Vision},
    7990   volume = {21},
    7991   author = {Felsberg, M. and Sommer, G.}
    7992 }
    7993 @article{Stoger-Pollach2006,
    7994   year = {2006},
    7995   title = {Cerenkov losses: A limit for bandgap determination and {Kramers-Kronig} analysis},
    7996   pages = {396-402},
    7997   journal = {Micron},
    7998   volume = {37},
    7999   author = {{St\"oger-Pollach}, M. and Franco, H. and Schattschneider, P. and Lazar, S. and Schaffer, B. and Grogger, W. and Zandbergen, H.W.}
    8000 }
    8001 @article{Dekker1997,
    8002   number = {3},
    8003   year = {1997},
    8004   title = {Resolution: a survey},
    8005   pages = {547-557},
    8006   journal = {Journal of the Optical Society of America A},
    8007   volume = {14},
    8008   author = {Dekker, A.J. den and Bos, A. van den}
    8009 }
    8010 @article{Porod1953,
    8011   number = {2},
    8012   year = {1953},
    8013   title = {X-ray and light scattering by chain molecules in solution},
    8014   pages = {157-166},
    8015   journal = {Journal of Polymer Science},
    8016   volume = {10},
    8017   author = {Porod, G.}
    8018 }
    8019 @article{Wong1992,
    8020   year = {1992},
    8021   title = {Measurement of spherical aberration in {STEM}},
    8022   pages = {139-150},
    8023   journal = {Ultramicroscopy},
    8024   volume = {40},
    8025   author = {Wong, K. and Kirkland, E. and Xu, P. and Loane, R. and Silcox, J.}
    8026 }
    8027 @techreport{Cozman1997,
    8028   year = {1997},
    8029   title = {An Informal Introduction to Quasi-{Bayesian} Theory (and Lower Probability, Lower Expectations, Choquet Capacities, Robust {Bayesian} Methods, etc\dots) for {AI}},
    8030   note = {CMU-RI-TR-97-24},
    8031   address = {Pittsburgh, USA},
    8032   institution = {The Robotics Institute, Carnegie Mellon University},
    8033   author = {Cozman, F.}
    8034 }
    8035 @article{Dekker1999,
    8036   number = {1},
    8037   year = {1999},
    8038   title = {How to optimize the design of a quantitative {HREM} experiment so as to attain the highest precision},
    8039   pages = {95-104},
    8040   journal = {Journal of Microscopy},
    8041   volume = {194},
    8042   author = {Dekker, A.J. den and Sijbers, J. and Dyck, D. van}
    8043 }
    8044 @article{Zhang2003,
    8045   year = {2003},
    8046   title = {Automated image acquisition and processing using a new generation of {4Kx4K CCD} cameras for cryo electron microscopic studies of macromolecular assemblies},
    8047   pages = {135-144},
    8048   journal = {Journal of Structural Biology},
    8049   volume = {143},
    8050   author = {Zhang, P. and Borgnia, M.J. and Mooney, P. and Shi, D. and Pan, M. and O'Herron, P. and Mao, A. and Brogan, D. and Milne, J.L.S. and Subramaniam, S.}
    8051 }
    8052 @article{Zhang2001,
    8053   number = {5},
    8054   month = {May},
    8055   year = {2001},
    8056   title = {Image Sequence Segmentation Using 3-D Structure Tensor and Curve Evolution},
    8057   pages = {629--641},
    8058   journal = {IEEE Transactions on Circuits and Systems for Video Technology},
    8059   volume = {11},
    8060   author = {Zhang, J. and Gao, J. and Liu, W.}
    8061 }
    8062 @article{Kutka1996,
    8063   number = {1},
    8064   month = {February},
    8065   year = {1996},
    8066   title = {Extraction of Line Properties Based on Direction Fields},
    8067   pages = {51--58},
    8068   journal = {IEEE Transactions on Medical Imaging},
    8069   volume = {15},
    8070   author = {Kutka, R. and Stier, S.}
    8071 }
    8072 @article{Adams1993,
    8073   number = {5},
    8074   year = {1993},
    8075   title = {Radial Decomposition of Discs and Spheres},
    8076   pages = {325--332},
    8077   journal = {CVGIP: Graphical Models and Image Processing},
    8078   volume = {55},
    8079   author = {Adams, R.}
    8080 }
    8081 @inproceedings{Gilles1985,
    8082   year = {1985},
    8083   title = {Universal Computer Program for Seeking of a Collision Free Path for an Industrial Robot},
    8084   booktitle = {Proceedings of the 15th ISIR Conference (Tokyo)},
    8085   author = {Gilles, W.}
    8086 }
    8087 @article{Rushing2001,
    8088   number = {8},
    8089   year = {2001},
    8090   title = {Using association rules as texture features},
    8091   pages = {845 -858},
    8092   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    8093   volume = {23},
    8094   author = {Rushing, J.A. and Ranganath, H.S. and Hinke, T.H. and Graves, S.J.}
    8095 }
    8096 @article{Jonge2004,
    8097   year = {2004},
    8098   title = {Carbon nanotube electron sources and applications},
    8099   pages = {2239-2266},
    8100   journal = {Philosophical Transactions of the Royal Society of London A},
    8101   volume = {362},
    8102   author = {Jong, N. de and Bonard, J.M.}
    8103 }
    8104 @article{Mullikin1992,
    8105   number = {6},
    8106   year = {1992},
    8107   title = {The vector distance transform in two and three dimensions},
    8108   pages = {526-535},
    8109   journal = {Graphical Models and Image Processing},
    8110   volume = {54},
    8111   author = {Mullikin, J.C.}
    8112 }
    8113 @article{Hermans1952,
    8114   number = {11},
    8115   year = {1952},
    8116   title = {The statistics of stiff chains, with applications to light scattering},
    8117   pages = {951-971},
    8118   journal = {Physica},
    8119   volume = {18},
    8120   author = {Hermans, J.J. and Ullman, R.}
    8121 }
    8122 @article{Kram1993,
    8123   year = {1993},
    8124   title = {Localization of branching enzyme in potato tuber cells with the use of immunoelectron microscopy},
    8125   pages = {237-243},
    8126   journal = {Plant Physiology},
    8127   volume = {101},
    8128   author = {Kram, A.M. and Oostergetel, G.T. and Bruggen, E.F.J. van}
    8129 }
    8130 @article{Daubechies1986,
    8131   year = {1986},
    8132   title = {Painless nonorthogonal expansions},
    8133   pages = {1271--1283},
    8134   journal = {J. Math. Phys.},
    8135   volume = {27},
    8136   author = {Daubechies, I. and Grossmann, A. and Meyer, Y.}
    8137 }
    8138 @book{Misner1999,
    8139   year = {1999},
    8140   title = {Gravitation},
    8141   address = {New York},
    8142   publisher = {W.H. Freeman and Company},
    8143   author = {Misner, C.W. and Thorne, K.S. and Wheeler, J.A.}
    8144 }
    8145 @book{Abramowitz1973,
    8146   year = {1973},
    8147   title = {Handbook of Mathematical Functions},
    8148   publisher = {Dover Publications},
    8149   author = {Abramowitz, M. and Stegun, I.A.}
    8150 }
    8151 @article{CLIF1,
    8152   year = {1993},
    8153   title = {Imaginary Numbers are not Real - the Geometric Algebra of Spacetime.},
    8154   pages = {1775},
    8155   journal = {Found. Phys.},
    8156   volume = {23},
    8157   author = {Gull, S. and Lasenby, A. and Doran, C.}
    8158 }
    8159 @book{Young1983,
    8160   year = {1983},
    8161   title = {Signals and Systems},
    8162   publisher = {Prentice-Hall},
    8163   author = {Oppenheim, A.V. and Willsky, A.S. and Young, I.T.}
    8164 }
    8165 @article{Elder1999,
    8166   number = {2/3},
    8167   year = {1999},
    8168   title = {Are Edges Incomplete?},
    8169   pages = {97--122},
    8170   journal = {International Journal of Computer Vision},
    8171   volume = {34},
    8172   author = {Elder, J.H.}
    8173 }
    8174 @article{Sole2001,
    8175   year = {2001},
    8176   title = {Crease Enhancement Diffusion},
    8177   pages = {241--248},
    8178   journal = {Computer Vision and Image Understanding},
    8179   volume = {84},
    8180   author = {{Sol\'e}, A.F. and {L\'opez}, A. and Sapiro, G.}
    8181 }
    8182 @article{Elder1998,
    8183   number = {7},
    8184   year = {1998},
    8185   title = {Local scale control for edge detection and blur estimation},
    8186   pages = {699--716},
    8187   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    8188   volume = {20},
    8189   author = {Elder, J.H. and Zucker, S.W.}
    8190 }
    8191 @book{Vladimirov1986,
    8192   year = {1986},
    8193   title = {A Collection of Problems on the Equations of Mathematical Physics},
    8194   address = {Heildelberg},
    8195   publisher = {Springer},
    8196   author = {Vladimirov, S.V.}
    8197 }
    8198 @inproceedings{Elder1996,
    8199   year = {1996},
    8200   title = {Scale Space Localization, Blur and Contour-based Image Coding},
    8201   booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition},
    8202   pages = {27--34},
    8203   address = {San Francisco, USA},
    8204   author = {Elder, J. and Zucker, S.}
    8205 }
    8206 @article{Young1977,
    8207   number = {7},
    8208   year = {1977},
    8209   title = {Proof without Prejudice: Use of the {Kolmogorov-Smirnov} Test for the Analysis of Histograms from Flow Systems and Other Sources},
    8210   pages = {935--941},
    8211   journal = {Journal of Histochemistry and Cytochemistry},
    8212   volume = {25},
    8213   author = {Young, I.T.}
    8214 }
    8215 @article{Young1974,
    8216   number = {4},
    8217   month = {August},
    8218   year = {1974},
    8219   title = {An Analysis Technique for Biological Shape {I}},
    8220   pages = {357--370},
    8221   journal = {Information and Control},
    8222   volume = {25},
    8223   author = {Young, I.T. and Walker, J.E. and Bowie, J.E.}
    8224 }
    8225 @article{Ebeling1993,
    8226   number = {1},
    8227   month = {January},
    8228   year = {1993},
    8229   title = {Detecting Structure in Two Dimensions Combining Voronoi Tessellation and Percolation},
    8230   pages = {704--710},
    8231   journal = {Physical Review E},
    8232   volume = {47},
    8233   author = {Ebeling, H. and Wiedemann, G.}
    8234 }
    8235 @article{Goutsias2000,
    8236   year = {2000},
    8237   title = {Fundamenta Morphologicae Mathematicae},
    8238   pages = {1--31},
    8239   journal = {Fundamenta Informaticae},
    8240   volume = {41},
    8241   author = {Goutsias, John and Heijmans, Henk J.A.M.}
    8242 }
    8243 @article{Winkler2003,
    8244   year = {2003},
    8245   title = {Focus gradient correction applied to tilt series image data used in electron tomography},
    8246   pages = {24-32},
    8247   journal = {Journal of Structural Biology},
    8248   volume = {143},
    8249   author = {Winkler, H. and Taylor, K.A.}
    8250 }
    8251 @article{Winkler2006,
    8252   year = {2006},
    8253   title = {Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography},
    8254   pages = {240-254},
    8255   journal = {Ultramicroscopy},
    8256   volume = {106},
    8257   author = {Winkler, H. and Taylor, K.A.}
    8258 }
    8259 @article{Shapiro1975,
    8260   year = {1975},
    8261   title = {Transformations for the Computer Detection of Curves in Noisy Pictures},
    8262   pages = {328--338},
    8263   journal = {Computer Graphics and Image Processing},
    8264   volume = {4},
    8265   annote = {key_radon},
    8266   author = {Shapiro, S.D.}
    8267 }
    8268 @article{Weickert2001,
    8269   number = {3},
    8270   year = {2001},
    8271   title = {Variational Optic Flow Computation with a Spatio-Temporal Smoothness Constraint},
    8272   pages = {245 - 255},
    8273   journal = {Journal of Mathematical Imaging and Vision},
    8274   volume = {14},
    8275   author = {Weickert, J. and {Sch\"orr}, C.}
    8276 }
    8277 @article{Heintzmann2003a,
    8278   number = {7},
    8279   year = {2003},
    8280   title = {Saturated patterned excitation microscopy with two-dimensional excitation patterns},
    8281   pages = {283-291},
    8282   journal = {Micron},
    8283   volume = {34},
    8284   author = {Heintzmann, R.}
    8285 }
    8286 @article{Shapiro1978,
    8287   year = {1978},
    8288   title = {Feature Space Transforms for Curve Detection},
    8289   pages = {129--143},
    8290   journal = {Pattern Recognition},
    8291   volume = {10},
    8292   annote = {key_radon},
    8293   author = {Shapiro, S.D.}
    8294 }
    8295 @article{Verbeek1994kort,
    8296   number = {7},
    8297   year = {1994},
    8298   title = {On the location error of curved edges in low-pass filtered {2-D} and {3-D} images },
    8299   pages = {726--733},
    8300   journal = {PAMI},
    8301   volume = {16},
    8302   author = {Verbeek, P.W. and Vliet, L.J. van }
    8303 }
    8304 @inproceedings{Thevenaz2000,
    8305   year = {2000},
    8306   title = {Image Interpolation and Resampling},
    8307   booktitle = {Handbook of Medical Image Processing},
    8308   editor = {Bankman, I.},
    8309   publisher = {Academic Press},
    8310   author = {Th\'evenaz, P. and Blu, T. and Unser M.}
    8311 }
    8312 @article{Guessoum1986,
    8313   number = {4},
    8314   month = {August},
    8315   year = {1986},
    8316   title = {Fast Algorithms for the Multidimensional Discrete {Fourier} Transform},
    8317   pages = {937--943},
    8318   journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
    8319   volume = {34},
    8320   annote = {key_fft},
    8321   author = {Guessoum, A. and Merserau, R.M.}
    8322 }
    8323 @phdthesis{Vrooman1991,
    8324   year = {1991},
    8325   title = {Quantitative analysis of interferograms},
    8326   address = {Delft, the Netherlands},
    8327   school = {Delft University of Technology},
    8328   author = {Vrooman, H.A.}
    8329 }
    8330 @article{Levi2005,
    8331   number = {4},
    8332   year = {2005},
    8333   title = {{3-D} Particle Tracking in a Two-Photon Microscope: Application to the Study of Molecular Dynamics in Cells},
    8334   pages = {2919-2929},
    8335   journal = {Biophysical Journal},
    8336   volume = {88},
    8337   author = {Levi, V. and Ruan, Q.Q. and Grattown, E.}
    8338 }
    8339 @book{Bernerian1992,
    8340   year = {1992},
    8341   title = {Linear Algebra},
    8342   address = {Oxford},
    8343   publisher = {Oxford},
    8344   author = {Berberian, S.K.}
    8345 }
    8346 @misc{Zach2003,
    8347   year = {2003},
    8348   title = {Method for detecting geometrical-optical aberrations},
    8349   howpublished = {US2003/0001102},
    8350   author = {Zach, J.}
    8351 }
    8352 @book{Heijmans1994,
    8353   series = {Advances in Electronics and Electron Physics},
    8354   year = {1994},
    8355   title = {Morphological Image Operators},
    8356   editor = {Hawkes, P.W. and Kazan, B.},
    8357   volume = {25},
    8358   address = {San Diego},
    8359   publisher = {Academic Press},
    8360   author = {Heijmans, H.J.A.M.}
    8361 }
    8362 @article{Zemlin1978,
    8363   year = {1978},
    8364   title = {Coma-free alignment of high resolution electron microscopes with the aid of optical diffratctorgrams},
    8365   pages = {49-60},
    8366   journal = {Ultramicroscopy},
    8367   volume = {3},
    8368   author = {Zemlin, F. and Weiss, K. and Schiske, P. and Kunath, W. and Herrmann, K.-H.}
    8369 }
    8370 @article{Goetcherian1980,
    8371   year = {1980},
    8372   title = {From Binary to Grey Tone Image Processing Using Fuzzy Logic Concepts},
    8373   pages = {7-15},
    8374   journal = {Pattern Recognition},
    8375   volume = {12},
    8376   author = {Goetcherian, V.}
    8377 }
    8378 @inbook{Rao2002,
    8379   year = {2002},
    8380   title = {Encyclopedia of Imaging Science and Technology},
    8381   pages = {1444--1450},
    8382   editor = {Hornak, J.P.},
    8383   volume = {2},
    8384   chapter = {Wavelet Transforms},
    8385   publisher = {John Wiley\&Sons},
    8386   author = {Rao, R.}
    8387 }
    8388 @book{Jahne2002,
    8389   year = {2002},
    8390   title = {Digital Image Processing},
    8391   address = {Berlin},
    8392   publisher = {Springer-Verlag},
    8393   author = {{J\"ahne}, B.}
    8394 }
    8395 @misc{Kahan1995,
    8396   year = {1995},
    8397   title = {The Baleful Effect of Computer Benchmarks upon Applied Mathematics, Physics and Chemistry},
    8398   howpublished = {Mathematics Dept., and Elect. Eng. \& Computer Sci. Dept., University of California, USA},
    8399   author = {Kahan, W.}
    8400 }
    8401 @article{You1996,
    8402   number = {2},
    8403   month = {February},
    8404   year = {1996},
    8405   title = {Ringing Reduction in Image Restoration by Orientation-Selective Regularization},
    8406   pages = {29--31},
    8407   journal = {IEEE Signal Processing Letters},
    8408   volume = {3},
    8409   author = {You, Y.-L. and Kaveh, M.}
    8410 }
    8411 @article{Luengo2005a,
    8412   number = {11},
    8413   year = {2005},
    8414   title = {Using Line Segments as Structuring Elements for Sampling-Invariant Measurements},
    8415   pages = {1826-1831},
    8416   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    8417   volume = {27},
    8418   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    8419 }
    8420 @mastersthesis{Luengo1998,
    8421   year = {1998},
    8422   title = {Improved Resolution in Infrared Imaging Using randomly Shifted Images},
    8423   address = {Delft},
    8424   school = {Pattern Recognition Group, Faculty of Applied Sciences, Delft University of Technology},
    8425   author = {Luengo Hendriks, C.L.}
    8426 }
    8427 @article{Gatica2001,
    8428   number = {9},
    8429   year = {2001},
    8430   title = {Extensive partition operators, gray-level connected operators, and region merging/classification segmentation algorithms: theoretical links },
    8431   pages = {1332 -1345},
    8432   journal = {IEEE Transactions on Image Processing},
    8433   volume = {10},
    8434   author = {Gatica-Perez, D. and Gu, C. and Sun, M.-T. and Ruiz-Correa, S.}
    8435 }
    8436 @article{Keil1996,
    8437   number = {10},
    8438   month = {May},
    8439   year = {1996},
    8440   title = {Modelling of Phenomena within Catalyst Particles},
    8441   pages = {1543--1567},
    8442   journal = {Chemical Engineering Science},
    8443   volume = {51},
    8444   author = {Keil, F.J.}
    8445 }
    8446 @misc{Tolimieri2000,
    8447   year = {2000},
    8448   title = {Lesser Known {FFT} Algorithms},
    8449   note = {20th Century Harmonic Analysis -- A Celebration, NATO Advanced Study Institute},
    8450   annote = {key_fft},
    8451   author = {Tolimieri, R. and An, M.}
    8452 }
    8453 @inproceedings{Felsberg2000a,
    8454   year = {2000},
    8455   title = {The Multidimensional Isotropic Generalization of Quadrature Filters in Geometric Algebra},
    8456   booktitle = {2nd International Workshop on Algebraic Frames for the Perception-Action Cycle, AFPAC 2000, Kiel, Germany},
    8457   pages = {175--185},
    8458   publisher = {Springer Verlag},
    8459   author = {Felsberg, M. and Sommer, G.}
    8460 }
    8461 @incollection{Young1998,
    8462   year = {1998},
    8463   title = {Image Processing Fundamentals },
    8464   booktitle = {The Digital Signal Processing handbook},
    8465   editor = {Madisetti, V.K. and Williams, D.B.},
    8466   chapter = {51},
    8467   publisher = {IEEE Press and CRC Press },
    8468   author = {Young, I.T. and Gerbrands, J.J. and Vliet, L.J. van }
    8469 }
    8470 @article{Jeulin2000,
    8471   year = {2000},
    8472   title = {Random Texture Models for Material Structures},
    8473   pages = {121--132},
    8474   journal = {Statistics and Computing},
    8475   volume = {10},
    8476   author = {Jeulin, D.}
    8477 }
    8478 @inproceedings{Young1993,
    8479   month = {May 25-28},
    8480   year = {1993},
    8481   title = {Depth-of-focus in microscopy },
    8482   booktitle = {SCIA'93, Proceedings of the 8th Scandinavian Conference on Image Analysis},
    8483   pages = {493-498},
    8484   editor = {{H\o gda}, K. A. and Braathen, B. and Heia, K.},
    8485   address = {{Troms\o} Norway},
    8486   publisher = {Norwegian Society for Image Processing and Pattern Recognition},
    8487   author = {Young, I.T. and Zagers, R. and Vliet, L.J. van and Mullikin, J. and Boddeke, F.R. and Netten, H.}
    8488 }
    8489 @article{HaarRomeny1994,
    8490   number = {6},
    8491   year = {1994},
    8492   title = {Higher order differential structure of images},
    8493   pages = {317-325},
    8494   journal = {Image and Vision Computing},
    8495   volume = {12},
    8496   author = {Haar Romeny, B.M. ter and Florack, L.M.J. and Salden, A.H. and Viergever, M.A.}
    8497 }
    8498 @article{Haider1998,
    8499   year = {1998},
    8500   title = {A spherical-aberration-corrected 200 {kV} transmission electron microscope},
    8501   pages = {53-60},
    8502   journal = {Ultramicroscopy},
    8503   volume = {75},
    8504   author = {Haider, M. and Rose, H. and Uhlemann, S. and Schwan, E. and Kabius, B. and Urban, K.}
    8505 }
    8506 @article{Young1995,
    8507   number = {2},
    8508   year = {1995},
    8509   title = {Recursive implementation of the {G}aussian filter},
    8510   pages = {139--151},
    8511   journal = {Signal Processing},
    8512   volume = {44},
    8513   author = {Young, I.T. and Vliet, L.J. van}
    8514 }
    8515 @article{Young1996,
    8516   number = {1},
    8517   year = {1996},
    8518   title = {Quantitative Microscopy},
    8519   pages = {59-66},
    8520   journal = {IEEE Engineering in Medicine and Biology},
    8521   volume = {15},
    8522   author = {Young, I.T.}
    8523 }
    8524 @article{Milne2002,
    8525   year = {2002},
    8526   title = {Molecular architecture and mechanism of an icosahedral pyruvate dehydrogenase complex: a multifunctional catalytic machine},
    8527   pages = {5587-5598},
    8528   journal = {EMBO Journal},
    8529   volume = {21},
    8530   author = {Milne, J.L.S. and Shi, D. and Rosenthal, P.B. and Sunshine, J.S. and Domingo, G.J. and Wu, X. and Brooks, B.R. and Perham, R.N. and Henderson, R. and Subramaniam, S.}
    8531 }
    8532 @incollection{Ginkel2001a,
    8533   year = {2001},
    8534   title = {Applications of Image Analysis in Orientation Space},
    8535   booktitle = {Fourth Quinqennial Review 1996-2001 of the Dutch Society for Pattern Recognition and Image Processing},
    8536   pages = {365--380},
    8537   editor = {Vossepoel, A.M. and Vos, F.M.},
    8538   author = {Ginkel, M. van and Vliet, L.J. van and Verbeek, P.W.}
    8539 }
    8540 @book{Schone1990,
    8541   year = {1990},
    8542   title = {Differentialgeometrie},
    8543   address = {Leipzig},
    8544   publisher = {Teubner},
    8545   author = {W. {Sch\"one}}
    8546 }
    8547 @article{Nickell2004,
    8548   number = {3},
    8549   year = {2004},
    8550   title = {{TOM} software toolbox: acquisition and analysis for electron tomography},
    8551   pages = {227-234},
    8552   journal = {Journal of Strcutural Biology},
    8553   volume = {149},
    8554   author = {Nickell, S. and {F\"orster}, F. and Linaroudis, A. and Net, W. del and Beck, F. and Hegerl, R. and Baumeister, W. and Plizko, J.M.}
    8555 }
    8556 @inproceedings{Kaltenbacher1996,
    8557   year = {1996},
    8558   title = {High resolution infrared image reconstruction using multiple, low resolution, aliased frames},
    8559   booktitle = {SPIE Proceedings},
    8560   pages = {142-152},
    8561   volume = {2751},
    8562   author = {Kaltenbacher, E.A. and Hardie, R.C.}
    8563 }
    8564 @article{Yaroslavsky2003,
    8565   number = {20},
    8566   year = {2003},
    8567   title = {Boundary effect free and adaptive discrete signal sinc-interpolation algorithms for signal and image resampling},
    8568   pages = {4166-4175},
    8569   journal = {Applied Optics},
    8570   volume = {42},
    8571   author = {Yaroslavsky, L.}
    8572 }
    8573 @article{Yeong1998,
    8574   number = {1},
    8575   month = {January},
    8576   year = {1998},
    8577   title = {Reconstructing random media},
    8578   journal = {Physical review E},
    8579   volume = {57},
    8580   author = {Yeong, C.L.Y. and Torquato, S.}
    8581 }
    8582 @inproceedings{Leonardis1992,
    8583   series = {Lecture Notes in Computer Science 588},
    8584   month = {May},
    8585   year = {1992},
    8586   title = {Finding Parametric Curves in an Image},
    8587   booktitle = {Second European Conference on Computer Vision},
    8588   pages = {653--657},
    8589   editor = {Sandini, G.},
    8590   address = {Santa Margherita Ligure, Italy},
    8591   publisher = {Springer},
    8592   author = {Leonardis, A. and Bajcsy, R.}
    8593 }
    8594 @article{Wallrabe2005,
    8595   number = {1},
    8596   year = {2005},
    8597   title = {Imaging protein molecules using FRET and FLIM microscopy},
    8598   pages = {19-27},
    8599   journal = {Current Opinion in Biotechnology},
    8600   volume = {16},
    8601   author = {Wallrabe, H. and Periasamy, A.}
    8602 }
    8603 @article{Barron1994,
    8604   number = {1},
    8605   year = {1994},
    8606   title = {Performance of optical flow techniques},
    8607   pages = {43--77},
    8608   journal = {International Journal of Computer Vision},
    8609   volume = {12},
    8610   author = {Barron, J.L. and Fleet, D.J. and Beauchemin, S.}
    8611 }
    8612 @book{Bronstein2000,
    8613   year = {2000},
    8614   title = {Taschenbuch der Mathematik},
    8615   publisher = {Verlag Harri Deutsch},
    8616   author = {Bronstein, I.N. and Semendjajew, K.A. and Musiol, G. and {M\"uhlig}, H.}
    8617 }
    8618 @article{Martin2001,
    8619   year = {2001},
    8620   title = {Combined {EM/X}-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage {PRD1} and Shows Key Capsid and Membrane Interactions},
    8621   pages = {917-930},
    8622   journal = {Structure},
    8623   volume = {9},
    8624   author = {Martin, C. san and Burnett, R.M. and Hass, F. de and Heinkel, R. and Rutten, T. and Fuller, S.D. and Butcher, S.J. and Bamford, D.H.}
    8625 }
    8626 @article{Cowley1969,
    8627   number = {2},
    8628   year = {1969},
    8629   title = {Image contrast in a transmission scanning electron microscope},
    8630   pages = {58-59},
    8631   journal = {Applied Physics Letters},
    8632   volume = {15},
    8633   author = {Cowley, J.M.}
    8634 }
    8635 @article{Rivetti2001,
    8636   number = {1-2},
    8637   year = {2001},
    8638   title = {Accurate length determination of {DNA} molecules visualized by atomic force microscopy: evidence for a partial {B-} to {A-form} transition on mica},
    8639   pages = {55-66},
    8640   journal = {Ultramicroscopy},
    8641   volume = {87},
    8642   author = {Rivetti, C. and Codeluppi, S.}
    8643 }
    8644 @article{Aert2004,
    8645   year = {2004},
    8646   title = {How to optimize the experimental design of quantitative atomic resolution {TEM} experiments?},
    8647   pages = {425-429},
    8648   journal = {Micron},
    8649   volume = {35},
    8650   author = {Aert, S. van and Dekker, A.J. den and Dyck, D. van}
    8651 }
    8652 @book{Fraleigh1994,
    8653   edition = {5th},
    8654   year = {1994},
    8655   title = {A First Course in Abstract Algebra},
    8656   publisher = {Addison-Wesley},
    8657   author = {Fraleigh, J.B.}
    8658 }
    8659 @article{Duffin1952,
    8660   month = {March},
    8661   year = {1952},
    8662   title = {A Class of Nonharmonic {Fourier} Series},
    8663   pages = {341--366},
    8664   journal = {Transactions of the American Mathematical Society},
    8665   volume = {72},
    8666   author = {Duffin, R.J. and Schaeffer, A.C.}
    8667 }
    8668 @article{Aert2002,
    8669   year = {2002},
    8670   title = {High-resolution electron microscopy and electron tomography: resolution versus precision},
    8671   pages = {21-33},
    8672   journal = {Journal of Structural Biology},
    8673   volume = {138},
    8674   author = {Aert, S. van and Dekker, A.J. den and Dyck, D. van and Bos, A. van den}
    8675 }
    8676 @article{Cootes2001,
    8677   number = {6},
    8678   month = {June},
    8679   year = {2001},
    8680   title = {Active Appearance Models},
    8681   pages = {681--685},
    8682   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    8683   volume = {23},
    8684   author = {Cootes, T.F. and Edwards, G.J. and Taylor, C.J.}
    8685 }
    8686 @article{Hilfer1991,
    8687   number = {1},
    8688   month = {July},
    8689   year = {1991},
    8690   title = {Geometric and Dielectric Characterization of Porous Media},
    8691   pages = {60--75},
    8692   journal = {Physical Review B},
    8693   volume = {44},
    8694   author = {Hilfer, R.}
    8695 }
    8696 @article{Hilfer1992,
    8697   number = {13},
    8698   month = {April},
    8699   year = {1992},
    8700   title = {Local-Porosity Theory for Flow in Porous Media},
    8701   pages = {7115--7121},
    8702   journal = {Physical Review B},
    8703   volume = {45},
    8704   author = {Hilfer, R.}
    8705 }
    8706 @article{Rieger2004c,
    8707   year = {2004},
    8708   title = {Alignment of the Cell Nucleus From Labeled Proteins Only for {4D} In Vivo Imaging},
    8709   pages = {142-150},
    8710   journal = {Microscopy Research and Technique},
    8711   volume = {64},
    8712   author = {Rieger, B. and Molenaar, C. and Dirks, R.W. and Vliet, L.J.}
    8713 }
    8714 @unpublished{VerbeekXXXX,
    8715   title = {Line and Edge Detection by Symmetry Filters},
    8716   author = {Verbeek, P.W.}
    8717 }
    8718 @article{Heertje1998,
    8719   number = {31},
    8720   year = {1998},
    8721   title = {Liquid Crystalline Phases in the Structuring of Food Products},
    8722   pages = {387--396},
    8723   journal = {Lebensmittel-Wissenschaft und Technologie},
    8724   author = {Heertje, I. and Roijers, E.C. and Hendrikx, H.A.C.M.}
    8725 }
    8726 @article{Ritchie1974,
    8727   number = {7},
    8728   month = {July},
    8729   year = {1974},
    8730   title = {The {UNIX} Time-Sharing System},
    8731   pages = {365--375},
    8732   journal = {Communications of the {ACM}},
    8733   volume = {17},
    8734   author = {Ritchie, D.M. and Thompson, K.}
    8735 }
    8736 @inproceedings{Blanc1995,
    8737   year = {1995},
    8738   title = {{X}-Splines: A Spline Model Designed for the End-User},
    8739   booktitle = {Proceedings of SIGGRAPH},
    8740   pages = {377--386},
    8741   author = {Blanc, C. and Schlick, C.}
    8742 }
    8743 @article{Zwiggelaar1999,
    8744   number = {1},
    8745   year = {1999},
    8746   title = {Model-based Detection of Spiculated Lesions in Mammograms},
    8747   pages = {39-62},
    8748   journal = {Medical Image Analysis},
    8749   volume = {3},
    8750   author = {Zwiggelaar, R. and Parr, T. and Schumm, J.E. and Hutt, I.W. and Taylor, C.J. and Astley, S.M. and Boggis, R.M.}
    8751 }
    8752 @article{Pothuaud2000,
    8753   month = {August},
    8754   year = {2000},
    8755   title = {A New Method for Three-Dimensional Skeleton Graph Analysis of Porous Media: Application to Trabecular Bone Microarchitecture},
    8756   pages = {149--161},
    8757   journal = {Journal of Microscopy},
    8758   volume = {199, Pt 2},
    8759   author = {Pothuaud, L. and Porion, P. and Lespessailles, E. and Benhamou, C.L. and Levitz, P.}
    8760 }
    8761 @inproceedings{Zwiggelaar1998,
    8762   series = {Lecture Notes in Computer Science},
    8763   year = {1998},
    8764   title = {Abnormal Masses in Mammograms: Detection Using Scale-Orientation Signatures},
    8765   booktitle = {Medical Image Computing and Computer-Assisted Intervention - MICCAI'98, Proc. 1st Int. Conf. (Cambridge, MA, USA, Oct.11-13)},
    8766   volume = {1496},
    8767   address = {Berlin},
    8768   publisher = {Springer Verlag},
    8769   author = {Zwiggelaar, R. and Taylor, C.J.}
    8770 }
    8771 @article{Besag1974,
    8772   year = {1974},
    8773   title = {Spatial Interaction and the Statistical Analysis of Lattice Systems},
    8774   pages = {192--236},
    8775   journal = {Journal of the Royal Statistical Society, Series B},
    8776   volume = {36},
    8777   author = {Besag, J.E.}
    8778 }
    8779 @inproceedings{SHORTGlas2001,
    8780   series = {Lecture Notes on Computer Science},
    8781   year = {2001},
    8782   title = {Assessment of Center of Rotation of the Glenohumeral Joint by a Modified {H}ough Transform},
    8783   volume = {2208},
    8784   author = {Glas, M. van der and Vos, F.M. and Vossepoel, A.M.}
    8785 }
    8786 @article{Liang2002,
    8787   year = {2002},
    8788   title = {{IMIRS}: a high-resolution 3D reconstruction pachage integrated with a relational image database},
    8789   pages = {292-304},
    8790   journal = {Journal of Structural Biology},
    8791   volume = {137},
    8792   author = {Liang, Y. and Ke, E.Y. and Zhou, Z.H.}
    8793 }
    8794 @article{Wang2005,
    8795   year = {2005},
    8796   title = {An iterative Fourier-Bessel algorithm for reconstruction of helical structures with severe Bessel overlap},
    8797   pages = {65-78},
    8798   journal = {Journal of Structural Biology},
    8799   volume = {149},
    8800   author = {Wang, H.-W. and Nogales, E.}
    8801 }
    8802 @article{Milanfar1999,
    8803   number = {9},
    8804   year = {1999},
    8805   title = {A Model of the Effect on Image Motion in the Radon Transform Domain},
    8806   pages = {1276--1281},
    8807   journal = {IEEE Transaction on Image Processing},
    8808   volume = {8},
    8809   annote = {key_radon},
    8810   author = {P. Milanfar}
    8811 }
    8812 @article{Lee1997,
    8813   number = {5},
    8814   month = {May},
    8815   year = {1997},
    8816   title = {Adaptive Basis Matrix for the Morphological Function Processing Opening and Closing},
    8817   pages = {769--774},
    8818   journal = {IEEE Transactions on Image Processing},
    8819   volume = {6},
    8820   author = {Lee, Kyung-Hoon and Morales, Aldo and Ko, Sung-Jea}
    8821 }
    8822 @article{DeRosier2000,
    8823   number = {2},
    8824   year = {2000},
    8825   title = {Correction of high-resolution data for curvature of the {Ewald} sphere},
    8826   pages = {83-98},
    8827   journal = {Ultramicrosocpy},
    8828   volume = {81},
    8829   author = {DeRosier, D.J.}
    8830 }
    8831 @article{Jansen1993,
    8832   year = {1993},
    8833   title = {Analysis of Grey Level Histograms by using Statistical Methods for Mixtures of Distributions},
    8834   pages = {585--590},
    8835   journal = {Pattern Recognition Letters},
    8836   volume = {14},
    8837   author = {Jansen, R.C. and Reinink, K. and Heijden, G.W.A.M. van der}
    8838 }
    8839 @article{Lee1999,
    8840   number = {1},
    8841   month = {October},
    8842   year = {1999},
    8843   title = {Grouping ., -, {$\rightarrow$}, ?, into Regions, Curves, and Junctions},
    8844   pages = {54--69},
    8845   journal = {Computer Vision and Image Understanding},
    8846   volume = {76},
    8847   author = {Lee, M.S. and Medioni, G.}
    8848 }
    8849 @article{Schellman1995,
    8850   number = {1},
    8851   year = {1995},
    8852   title = {Static contributions to the persistence length of {DNA} and dynamic contributions to {DNA} curvature},
    8853   pages = {95-114},
    8854   journal = {Biophysical Chemistry},
    8855   volume = {55},
    8856   author = {Schellman, J.A. and Harvey, S.C.}
    8857 }
    8858 @article{Bigun1994a,
    8859   number = {1},
    8860   month = {January},
    8861   year = {1994},
    8862   title = {{N}-folded Symmetries by Complex Moments in {Gabor} Space and their Application to Unsupervised Texture Segmentation},
    8863   pages = {80--87},
    8864   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    8865   volume = {16},
    8866   author = {{Big\"un}, J. and Hans du Buf, J.M.}
    8867 }
    8868 @inproceedings{Danielsson1980a,
    8869   month = {December},
    8870   year = {1980},
    8871   title = {Rotation-Invariant Linear Operators with Directional Response},
    8872   booktitle = {Proceedings of the 5th international conference on Pattern Recognition (Miami Beach, Florida)},
    8873   pages = {1171--1176},
    8874   volume = {2},
    8875   author = {Danielsson, P.-E.}
    8876 }
    8877 @article{Heintzmann2003,
    8878   number = {7},
    8879   year = {2003},
    8880   title = {On resolution enhancement by subtraction of confocal signals taken at different pinhole sizes},
    8881   pages = {293-300},
    8882   journal = {Micron},
    8883   volume = {34},
    8884   author = {Heintzmann, R. and Sarafis, V. and Munroe, P. and Nailon, J. and Hanley, Q.S. and Jovin, T.M.}
    8885 }
    8886 @article{Arnison2002,
    8887   year = {2002},
    8888   title = {A 3D vectorial optical transfer function suitable for arbitrary pupil functions},
    8889   pages = {53-63},
    8890   journal = {Optics Communications},
    8891   volume = {211},
    8892   author = {Arnison, M.R. and Sheppard, C.J.R.}
    8893 }
    8894 @article{Heintzmann2002,
    8895   number = {8},
    8896   year = {2002},
    8897   title = {Saturated patterned excitation microscopy concept for optical resolution improvement},
    8898   pages = {1599-1609},
    8899   journal = {Journal of Optical Society of America A},
    8900   volume = {19},
    8901   author = {Heintzmann, R. and Jovin, T.M. and Cremer, C.}
    8902 }
    8903 @inproceedings{Yu2000,
    8904   year = {2000},
    8905   title = {A New 3{D} Orientation Steerable Filter},
    8906   booktitle = {Symposium {f\"ur} Mustererkennung, DAGM 2000, Kiel, Germany},
    8907   pages = {203--212},
    8908   publisher = {Springer Verlag},
    8909   author = {Yu, W. and Daniilidis, K. and Sommer, G.}
    8910 }
    8911 @article{Yu2001,
    8912   number = {2},
    8913   month = {February},
    8914   year = {2001},
    8915   title = {Approximate Orientation Steerability Based on Angular Gaussians},
    8916   pages = {193--205},
    8917   journal = {IEEE Transactions on Image Processing},
    8918   volume = {10},
    8919   author = {Yu, W. and Daniilidis, K. and Sommer, G.}
    8920 }
    8921 @inbook{Arnison2003,
    8922   series = {Optical imaging and microscopy - Techniques and Advanced Systems},
    8923   year = {2003},
    8924   title = {Wavefront Coding Fluorescence Microscopy Using High Aperture Lenses},
    8925   editor = {{T\"or\"ork}, P. and Kao, F.J.},
    8926   address = {Heidelberg, },
    8927   publisher = {Springer-Verlag},
    8928   author = {Arnison, M.R. and Cogswell, C.J. and Sheppard, C.J.R. and {T\"or\"ork}, P.}
    8929 }
    8930 @article{Heintzmann2004,
    8931   year = {2004},
    8932   title = {Double-pass Fourier transform imaging spectroscopy},
    8933   pages = {753-763},
    8934   journal = {Optics Express},
    8935   volume = {12},
    8936   author = {Heintzmann, R. and Lidke, K.A. and Jovin, T.M.}
    8937 }
    8938 @article{Yu2003,
    8939   number = {5},
    8940   year = {2003},
    8941   title = {Three Dimensional Orientation Signatures with Conic Kernel Filtering for Multiple Motion Analysis},
    8942   pages = {447--458},
    8943   journal = {Image and Vision Computing},
    8944   volume = {21},
    8945   author = {Yu, W. and Sommer, G. and Daniilidis, K.}
    8946 }
    8947 @article{Hyun2000,
    8948   year = {2000},
    8949   title = {On the Level Lines and Geometry of Vector Valued Images},
    8950   pages = {241--243},
    8951   journal = {IEEE Signal Processing Letters},
    8952   volume = {7},
    8953   author = {Hyun Chung, D. and Sapiro, G.}
    8954 }
    8955 @article{Schellman1974,
    8956   number = {1},
    8957   year = {1974},
    8958   title = {Flexibility of {DNA}},
    8959   pages = {217-226},
    8960   journal = {Biopolymers},
    8961   volume = {13},
    8962   author = {Schellman, J.A.}
    8963 }
    8964 @article{Mastronarde1997,
    8965   year = {1997},
    8966   title = {Dual-Axis Tomography: An Approach with Alignment Methods That Preserve Resolution},
    8967   pages = {343-352},
    8968   journal = {Journal of Structural Biology},
    8969   volume = {120},
    8970   author = {Mastronarde, D.N.}
    8971 }
    8972 @article{Verveer2000,
    8973   year = {2000},
    8974   title = {Global Analysis of Fluorescence Lifetime Imaging Microscopy Data},
    8975   pages = {2127-2137},
    8976   journal = {Biophysical Journal},
    8977   volume = {78},
    8978   author = {Verveer, P.J. and Squire, A. and Bastiaens, P.I.H.}
    8979 }
    8980 @article{Hermann1993,
    8981   month = {April},
    8982   year = {1993},
    8983   title = {Determination of Microstructural Parameters of Random Spatial Surface Fractals by Measuring Chord Length Distributions},
    8984   pages = {87--93},
    8985   journal = {Journal of Microscopy},
    8986   volume = {170, Pt 1},
    8987   author = {Hermann, H. and Ohser, J.}
    8988 }
    8989 @article{Kuwahara1976,
    8990   year = {1976},
    8991   title = {Processing of RI-angiocardiographic images},
    8992   pages = {187-203},
    8993   journal = {Digital Processing of Biomedical Images},
    8994   author = {Kuwahara, M. and Hachimura, K. and Eiho, S. and Kinoshita, M.}
    8995 }
    8996 @article{Luo1998,
    8997   number = {4},
    8998   year = {1998},
    8999   title = {Iterative Multilevel Thresholding and Splitting for Three-Dimensional Segmentation of Live Cell Nuclei Using Laser Scanning Confocal Microscopy},
    9000   pages = {151--162},
    9001   journal = {Journal of Computer-Assisted Microscopy},
    9002   volume = {10},
    9003   author = {Luo, D. and Barker, J. and McGrath, J.C. and Daly, C.J.}
    9004 }
    9005 @article{Jaffer1993,
    9006   month = {September},
    9007   year = {1993},
    9008   title = {Algebra and the Lambda Calculus},
    9009   pages = {36--40},
    9010   journal = {Dr. Dobbs's Journal},
    9011   author = {Jaffer, A.}
    9012 }
    9013 @book{Stoecker2000,
    9014   edition = {4},
    9015   year = {2000},
    9016   title = {Taschenbuch der {Physik}},
    9017   address = {Frankfurt (Main)},
    9018   publisher = {Verlag Harri Deutsch},
    9019   author = {{St\"ocker}, H.}
    9020 }
    9021 @article{Mouche2001,
    9022   year = {2001},
    9023   title = {Lumbricus terrestris Hemoglobin - The Architecture of Linker Chains and Structural Variation of the Central Toroid},
    9024   pages = {176-192},
    9025   journal = {Journal of Structural Biology},
    9026   volume = {133},
    9027   author = {Mouche, F. and Boisset, N. and Penczek, P.A.}
    9028 }
    9029 @article{Mouche2003,
    9030   year = {2003},
    9031   title = {Automated three-dimensional reconstruction of keyhole limpet hemocyanin type 1},
    9032   pages = {301-312},
    9033   journal = {Journal of Structural Biology},
    9034   volume = {144},
    9035   author = {Mouche, F. and Zhu, Y. and Pulokas, J. and Potter, C.S. and Carragher, B.}
    9036 }
    9037 @article{Knuth1987,
    9038   number = {4},
    9039   month = {October},
    9040   year = {1987},
    9041   title = {Digital Halftones by Dot Diffusion},
    9042   pages = {245--273},
    9043   journal = {ACM Transactions on Graphics},
    9044   volume = {6},
    9045   author = {Knuth, D.E.}
    9046 }
    9047 @article{Scharstein2002,
    9048   number = {1},
    9049   month = {April-June},
    9050   year = {2002},
    9051   title = {A Taxonomy and Evaluation of Dense Two-Frame Stereo Correspondence Algorithms},
    9052   pages = {7--42},
    9053   journal = {International Journal of Computer Vision},
    9054   volume = {47},
    9055   author = {Scharstein, D. and Szeliski, R.}
    9056 }
    9057 @article{Teuner1995,
    9058   number = {6},
    9059   month = {June},
    9060   year = {1995},
    9061   title = {Unsupervised Texture Segmentation of Images Using Tuned Matched Gabor Filters},
    9062   pages = {863--870},
    9063   journal = {IEEE Transactions on Image Processing},
    9064   volume = {4},
    9065   author = {Teuner, A. and Pichler, O. and Hosticka, B.J.}
    9066 }
    9067 @article{Kubitscheck2002,
    9068   number = {5-6},
    9069   year = {2002},
    9070   title = {Single Protein Molecules Visualized and Tracked in the Interior of Eukaryotic Cells},
    9071   pages = {267-274},
    9072   journal = {Single Molecule},
    9073   volume = {3},
    9074   author = {Kubitscheck, U.}
    9075 }
    9076 @article{Wigner1932,
    9077   number = {5},
    9078   month = {June},
    9079   year = {1932},
    9080   title = {On the Quantum Correction For Thermodynamic Equilibrium},
    9081   pages = {749--759},
    9082   journal = {Physical Review},
    9083   volume = {40},
    9084   author = {Wigner, E.}
    9085 }
    9086 @phdthesis{Gokstorp1995,
    9087   year = {1995},
    9088   title = {Depth Computation in Robot Vision},
    9089   address = {{Link\"oping}, Sweden},
    9090   school = {{Link\"oping} University},
    9091   author = {{G\"okstorp}, M.}
    9092 }
    9093 @article{Zuccheri2001,
    9094   number = {6},
    9095   year = {2001},
    9096   title = {Mapping the intrinsic curvature and flexibility along the {DNA} chain},
    9097   pages = {3074-3079},
    9098   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    9099   volume = {98},
    9100   author = {Zuccheri, G. and Scipioni, A. and Cavaliere, V. and Gargiulo, G. and Sanits, P. de and Samori, B. }
    9101 }
    9102 @article{Singleton1969,
    9103   number = {2},
    9104   month = {June},
    9105   year = {1969},
    9106   title = {An Algorithm for Computing the Mixed Radix Fast {Fourier} Transform},
    9107   pages = {93--103},
    9108   journal = {IEEE Transactions on Audio and Electroacoustics},
    9109   volume = {17},
    9110   annote = {key_fft},
    9111   author = {Singleton, R.C.}
    9112 }
    9113 @article{Daubechies1990,
    9114   number = {5},
    9115   month = {September},
    9116   year = {1990},
    9117   title = {The Wavelet Transform, Time-Frequency Localization and Signal Analysis},
    9118   pages = {961--1005},
    9119   journal = {IEEE Transactions on Information Theory},
    9120   volume = {36},
    9121   author = {Daubechies, I.}
    9122 }
    9123 @inproceedings{Dubowy2005,
    9124   series = {IEEE International Conference on Image Processing},
    9125   year = {2005},
    9126   title = {An approach to the correction of distance-dependent defocus in electron microscopic reconstruction},
    9127   pages = {748-751},
    9128   volume = {3},
    9129   author = {Dubowy, J.N. and Herman, G.T.}
    9130 }
    9131 @article{Whittaker1934,
    9132   year = {1934},
    9133   title = {On Lidstone's Series and Two-point Expansions of Analytic Functions},
    9134   pages = {451--469},
    9135   journal = {Proceedings London Math. Soc. (2)},
    9136   volume = {36},
    9137   author = {Whittaker, J.M.}
    9138 }
    9139 @article{Unser2000,
    9140   number = {4},
    9141   month = {April},
    9142   year = {2000},
    9143   title = {Sampling -- 50 Years after {Shannon}},
    9144   pages = {569--587},
    9145   journal = {Proceedings of the IEEE},
    9146   volume = {88},
    9147   author = {Unser, M.}
    9148 }
    9149 @article{Edelman1999,
    9150   number = {3},
    9151   year = {1999},
    9152   title = {The Future Fast {Fourier} Transform?},
    9153   pages = {1094--1114},
    9154   journal = {SIAM Journal on Scientific Computing},
    9155   volume = {20},
    9156   annote = {key_fft},
    9157   author = {Edelman, A. and McCorquodale, P. and Toledo, S.}
    9158 }
    9159 @book{Jahne1997a,
    9160   year = {1997},
    9161   title = {Practical handbook on Image Processing for Scientific Applications},
    9162   publisher = {CRC Press},
    9163   author = {{J\"ahne}, B.}
    9164 }
    9165 @article{Brox2006,
    9166   year = {2006},
    9167   title = {Nonlinear structure tensor},
    9168   pages = {41-55},
    9169   journal = {Image and Vision Computing},
    9170   volume = {24},
    9171   author = {Brox, T. and Weickert, J. and Burgeth, B. and Mrazek, P.}
    9172 }
    9173 @article{Zheng2004,
    9174   year = {2004},
    9175   title = {An improved strategy for automated electron microscopic tomography},
    9176   pages = {91-101},
    9177   journal = {Journal of Structural Biology},
    9178   volume = {147},
    9179   author = {Zheng, Q.S. and Braunfeld, M.B. and Sedat, J.W. and Agard, D.A.}
    9180 }
    9181 @article{Chepic1990,
    9182   number = {3},
    9183   year = {1990},
    9184   title = {Auger ionization of semiconductor quantum drops in a glass matrix},
    9185   pages = {113-127},
    9186   journal = {Journal of Luminescence},
    9187   volume = {47},
    9188   author = {Chepic, D.I. and Efros, A.L. and Ekimov, A.I. and Ivanov, M.G. and Kharchenko, V.A. and Kudriavtsev, I.A. and Yazeva, T.V.}
    9189 }
    9190 @article{Frenken1993,
    9191   year = {1993},
    9192   title = {Thermal Roughening Investigated by Scanning Tunnelling Microscopy},
    9193   pages = {27--36},
    9194   journal = {Faraday Discussions},
    9195   volume = {95},
    9196   author = {Frenken, J.W.M. and Kuipers, L. and Sanders, J.B.}
    9197 }
    9198 @article{Hilton1995,
    9199   number = {8},
    9200   year = {1995},
    9201   title = {Statistics of surface curvature estimates},
    9202   pages = {1201--1221},
    9203   journal = {Pattern Recognition},
    9204   volume = {28},
    9205   author = {Hilton, A. and Illingworth, J. and Windeatt, T.}
    9206 }
    9207 @article{Voort1995,
    9208   year = {1995},
    9209   title = {Restoration of confocal images for quantitative image analysis},
    9210   pages = {165--181},
    9211   journal = {J. Microscopy},
    9212   volume = {178},
    9213   author = {T.M. van der Voort and K.C. Strassers}
    9214 }
    9215 @article{Schatzman1996,
    9216   number = {3},
    9217   month = {March},
    9218   year = {1996},
    9219   title = {Index Mappings for the Fast {Fourier} Transform},
    9220   pages = {717--719},
    9221   journal = {IEEE Transactions on Signal Processing},
    9222   volume = {44},
    9223   annote = {key_fft},
    9224   author = {Schatzman, J.C.}
    9225 }
    9226 @misc{WeickertXXXX,
    9227   title = {Nonlinear Diffusion Scale-Spaces},
    9228   author = {Weickert, J.}
    9229 }
    9230 @book{Reimer1997,
    9231   edition = {4th},
    9232   year = {1997},
    9233   title = {Transition Electron Microscopy},
    9234   note = {sold out, reprint 2006},
    9235   address = {Berlin},
    9236   publisher = {Springer Verlag},
    9237   author = {Reimer, L.}
    9238 }
    9239 @article{Fukano2003,
    9240   number = {19},
    9241   year = {2003},
    9242   title = {Whole-Field Fluorescence Microscope with Digital Micromirror Device: Imaging of Biological Samples},
    9243   pages = {4119-4124},
    9244   journal = {Applied Optics},
    9245   volume = {42},
    9246   author = {Fukano, T. and Miyawaki, A.}
    9247 }
    9248 @article{Lifshitz1990,
    9249   number = {6},
    9250   month = {June},
    9251   year = {1990},
    9252   title = {A Multiresolution Hierarchical Approach to Image Segmentation Based on Intensity Extrema},
    9253   pages = {529--540},
    9254   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9255   volume = {12},
    9256   author = {Lifshitz, L.M. and Pizer, S.M.}
    9257 }
    9258 @article{Zenzo1986,
    9259   year = {1986},
    9260   title = {A Note on the Gradient of a Multi-Image},
    9261   pages = {116--125},
    9262   journal = {Computer Vision, Graphics and Image Processing},
    9263   volume = {33},
    9264   author = {Zenzo, S. di}
    9265 }
    9266 @article{Ranson2001,
    9267   year = {2001},
    9268   title = {{ATP}-Bound States of {GroEL} Captured by Cryo-Electron Microscopy},
    9269   pages = {869-879},
    9270   journal = {Cell},
    9271   volume = {107},
    9272   author = {Ranson, N.A. and Farr, G.W. and Roseman, A.M. and Gowen, B. and Fenton, W.A. and Horwich, A.L. and Saibil, H.R.}
    9273 }
    9274 @article{Fukano2004,
    9275   year = {2004},
    9276   title = {Similar diffusibility of membrane proteins across the axon-soma and dendrite-soma boundaries revealed by a novel {FRAP} technique},
    9277   pages = {12-18},
    9278   journal = {Journal of Structural Biology},
    9279   volume = {147},
    9280   author = {Fukano, T. and Hama, H. and Miyawaki, A.}
    9281 }
    9282 @article{Pape1999,
    9283   number = {5},
    9284   month = {September/October},
    9285   year = {1999},
    9286   title = {Permeability prediction based on fractal pore-space geometry},
    9287   pages = {1447--1460},
    9288   journal = {Geophysics},
    9289   volume = {64},
    9290   author = {Pape, H. and Clauser, C. and Iffland, J.}
    9291 }
    9292 @article{Ritchie1984,
    9293   number = {6},
    9294   month = {October},
    9295   year = {1984},
    9296   title = {The Evolution of the Unix Time-sharing System},
    9297   pages = {1577-1593},
    9298   journal = {{AT\&T} Bell Laboratories Technical Journal},
    9299   volume = {63},
    9300   author = {Ritchie, D.M.}
    9301 }
    9302 @article{Streekstra2001,
    9303   number = {3},
    9304   year = {2001},
    9305   title = {Scale dependent differential geometry for the measurement of center line and diameter in 3d curvilinear structures},
    9306   pages = {177-189},
    9307   journal = {International Journal of Computer Vision},
    9308   volume = {42},
    9309   author = {Streekstra, G.J. and Boomgaard, R. van den and Smeulders, A.W.M.}
    9310 }
    9311 @article{Jares-Erijman1996,
    9312   number = {3},
    9313   year = {1996},
    9314   title = {Determination of DNA Helical Handedness by Fluorescence Resonance Energy Transfer},
    9315   pages = {597-617},
    9316   journal = {Journal of Molecular Biology},
    9317   volume = {257},
    9318   author = {Jares-Erijman, E.A. and Jovin, T.M.}
    9319 }
    9320 @article{Dologlou1991,
    9321   number = {7},
    9322   month = {July},
    9323   year = {1991},
    9324   title = {Physical Interpretation of Signal Reconstruction from Reduced Rank Matrices},
    9325   pages = {1681--1682},
    9326   journal = {IEEE Transactions on Signal Processing},
    9327   volume = {39},
    9328   author = {Dologlou, I. and Carayannis, G.}
    9329 }
    9330 @article{Dologlou1996,
    9331   number = {2},
    9332   year = {1996},
    9333   title = {Projection-based Rank Reduction Algorithms for Multichannel Modeling and Image Compression},
    9334   pages = {97--109},
    9335   journal = {Signal Processing},
    9336   volume = {48},
    9337   author = {Dologlou, I. and Pesquet, J.-C. and Skowronski, J.}
    9338 }
    9339 @article{Sethi1987,
    9340   year = {1987},
    9341   title = {Finding trajectories of feature points in monocular image sequences},
    9342   pages = {56--73},
    9343   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9344   volume = {9},
    9345   author = {Sethi, I.K. and Jain, R. }
    9346 }
    9347 @phdthesis{Whitaker1993a,
    9348   year = {1993},
    9349   title = {Geometry-Limited Diffusion},
    9350   school = {The University of North Carolina, Chapel Hill, North Carolina},
    9351   author = {Whitaker, R.T.}
    9352 }
    9353 @article{Unser1995a,
    9354   number = {3},
    9355   year = {1995},
    9356   title = {Enlargement or reduction of digital images with minimum loss of information},
    9357   pages = {247-258},
    9358   journal = {IEEE Transactions on Image Processing},
    9359   volume = {4},
    9360   author = {Unser, Michael and Aldroubi, Akram and Eden, Murray}
    9361 }
    9362 @article{Hubel1962,
    9363   year = {1962},
    9364   title = {Receptive fields, binocular interaction and functional architecture in the cat's visual cortex},
    9365   pages = {106-154},
    9366   journal = {The Journal of Physiology},
    9367   volume = {160},
    9368   author = {Hubel, D.H. and Wiesel, T.N.}
    9369 }
    9370 @article{Young1985,
    9371   year = {1985},
    9372   title = {Estimation of Sampling Errors},
    9373   pages = {273--275},
    9374   journal = {Cytometry},
    9375   volume = {6},
    9376   author = {Young, I.T.}
    9377 }
    9378 @phdthesis{Nordberg1994a,
    9379   year = {1994},
    9380   title = {Signal Representation and Processing using Operator Groups},
    9381   address = {{Link\"oping}, Sweden},
    9382   school = {{Link\"oping University}},
    9383   author = {Nordberg, K.}
    9384 }
    9385 @article{Young1988,
    9386   number = {4},
    9387   year = {1988},
    9388   title = {Sampling Density and Quantitative Microscopy},
    9389   pages = {269--275},
    9390   journal = {Analytic and Quantitative Cytology Histology},
    9391   volume = {10},
    9392   author = {Young, I.T.}
    9393 }
    9394 @article{Alvarez1992,
    9395   number = {3},
    9396   month = {June},
    9397   year = {1992},
    9398   title = {Image selective smoothing and edge detection by nonlinear diffusion {II}},
    9399   pages = {845--866},
    9400   journal = {SIAM J. Numer. Anal.},
    9401   volume = {29},
    9402   author = {Alvarez, L. and Lions, P. and Morel, J.}
    9403 }
    9404 @article{Deriche1990,
    9405   number = {1},
    9406   month = {January},
    9407   year = {1990},
    9408   title = {Fast Algorithms for Low-Level Vision},
    9409   pages = {78--87},
    9410   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9411   volume = {12},
    9412   author = {Deriche, R.}
    9413 }
    9414 @article{Sartor2001,
    9415   number = {2},
    9416   year = {2001},
    9417   title = {Morphological Operations on Color Images},
    9418   pages = {548-559},
    9419   journal = {Journal of Electronic Imaging},
    9420   volume = {10},
    9421   author = {Sartor, L. J. and Weeks, A. R.}
    9422 }
    9423 @article{Rohr1997,
    9424   year = {1997},
    9425   title = {On 3D Differential Operators for Detecting Point Landmarks},
    9426   pages = {219--233},
    9427   journal = {Image and Vision Computing},
    9428   volume = {15},
    9429   author = {Rohr, K.}
    9430 }
    9431 @inproceedings{Luengo1999,
    9432   year = {1999},
    9433   title = {Resolution Enhancement of a Sequence of Undersampled Shifted Images},
    9434   booktitle = {ASCI'99, Proc. 5th Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands)},
    9435   pages = {95--102},
    9436   editor = {Boasson, M. and Kaandorp, J.A. and Tonino, J.F.M. and Vosselman, M.G.},
    9437   author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
    9438   organization = {ASCI, Delft}
    9439 }
    9440 @article{Sandberg2003,
    9441   year = {2003},
    9442   title = {A fast reconstruction algorithm for electron microscope tomography},
    9443   pages = {61-72},
    9444   journal = {Journal of Structural Biology},
    9445   volume = {144},
    9446   author = {Sandberg, K. and Mastronarde, D.N. and Beylkin, G.}
    9447 }
    9448 @article{Grigorieff1998,
    9449   year = {1998},
    9450   title = {Three-dimensional Structure of Bovine {NADH}:Ubiquinone Oxidoreductase (Complex {I}) at {22\AA} in Ice},
    9451   pages = {1033-1046},
    9452   journal = {Journal of Molecular Biology},
    9453   volume = {277},
    9454   author = {Grigorieff, N.}
    9455 }
    9456 @inproceedings{Smith1984,
    9457   month = {March},
    9458   year = {1984},
    9459   title = {A Procedure for Designing Exact Reconstruction Filter Banks for Tree Structured Sub-Band Coders},
    9460   booktitle = {Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing},
    9461   pages = {27.1.1--27.1.4},
    9462   address = {San Diego, U.S.A.},
    9463   author = {Smith, M.J. and Barnwell, T.P.}
    9464 }
    9465 @article{Santos2000,
    9466   number = {17},
    9467   year = {2000},
    9468   title = {Model-based resolution - applying the theory in quantitative microscopy},
    9469   pages = {2948-2958},
    9470   journal = {Applied Optics},
    9471   volume = {39},
    9472   author = {Santos, A. and Young, I.T.}
    9473 }
    9474 @article{Vossepoel1988,
    9475   year = {1988},
    9476   title = {A note on distance transformations in digital images},
    9477   pages = {88-97},
    9478   journal = {Computer Vision, Graphics, and Image Processing},
    9479   volume = {43},
    9480   author = {Vossepoel, A.M.}
    9481 }
    9482 @article{Garboczi1995,
    9483   number = {1},
    9484   month = {July},
    9485   year = {1995},
    9486   title = {Geometrical percolation threshold of overlapping ellipsoids},
    9487   journal = {Physical Review E},
    9488   volume = {52},
    9489   author = {Garboczi, E.J. and Snyder, K.A. and Douglas, J.F. and Thorpe, M.F.}
    9490 }
    9491 @article{Wu2000,
    9492   number = {24},
    9493   year = {2000},
    9494   title = {Picometer Accuracy in Measuring Lattice Displacements Across Planar Faults by Interferometry in Coherent Electron Diffraction},
    9495   pages = {5126-5129},
    9496   journal = {Physical Review Letters},
    9497   volume = {85},
    9498   author = {Wu, L. and Zhu, Y. and Tafto, J.}
    9499 }
    9500 @article{Vossepoel1982,
    9501   year = {1982},
    9502   title = {Vector code probability and metrication error in the representation of straight lines of finite length},
    9503   pages = {347-364},
    9504   journal = {Computer Graphics and Image Processing},
    9505   volume = {20},
    9506   author = {Vossepoel, A.M. and Smeulders, A.W.M.}
    9507 }
    9508 @article{Lazar2003,
    9509   year = {2003},
    9510   title = {Materials science applications of {HREELS} in near edge structure analysis and low-energy loss spectroscopy},
    9511   pages = {533-546},
    9512   journal = {Ultramicroscopy},
    9513   volume = {96},
    9514   author = {Lazar, S. and Botton, G.A. and Wu, M.-Y. and Tichelaar, F.D. and Zandbergen, H.W.}
    9515 }
    9516 @article{Muller1995,
    9517   year = {1995},
    9518   title = {Delocalization in inelastic scattering},
    9519   pages = {195-213},
    9520   journal = {Ultramicroscopy},
    9521   volume = {59},
    9522   author = {Muller, D.A. and Silcox, J.}
    9523 }
    9524 @mastersthesis{Brusse1995,
    9525   month = {August},
    9526   year = {1995},
    9527   title = {Quantitative structuuranalyse van aardlagen op basis van boorgatbeelden},
    9528   note = {in {D}utch},
    9529   school = {Delft University of Technology},
    9530   author = {Brusse, H.}
    9531 }
    9532 @book{JAEHNE,
    9533   year = {1997},
    9534   title = {Practical Handbook on Image Processing for Scientific Applications},
    9535   address = {New York},
    9536   publisher = {CRC Press},
    9537   author = {{J\"ahne}, B.}
    9538 }
    9539 @article{Lazar2004,
    9540   year = {2004},
    9541   title = {Investigation of hexagonal and cubic {GaN} by high-resolution electron energy-loss spectroscopy and density functional theory},
    9542   pages = {249-257},
    9543   journal = {Ultramicroscopy},
    9544   volume = {98},
    9545   author = {Lazar, S. and {H\'ebert}, C. and Zandbergen, H.W.}
    9546 }
    9547 @article{Huang1998,
    9548   year = {1998},
    9549   title = {The Empirical Mode Decomposition and the {Hilbert} Spectrum for Nonlinear and Non-stationary Time Series Analysis},
    9550   pages = {903--995},
    9551   journal = {Proceedings of the Royal Society of London A},
    9552   volume = {454},
    9553   author = {Huang, N.E. and Shen, Z. and Long, S.R. and Wu, M.C. and Shih, H.H. and Zheng, Q. and Yen, N.-C. and Tung, C.C. and Liu, H.H.}
    9554 }
    9555 @article{Huang1995,
    9556   number = {1},
    9557   month = {February},
    9558   year = {1995},
    9559   title = {Motion Estimation method using a 3D steerable filter},
    9560   pages = {21--32},
    9561   journal = {Image and Vision Computing},
    9562   volume = {13},
    9563   author = {Huang, C.-L. and Chen, Y.-T.}
    9564 }
    9565 @article{Peh2002,
    9566   number = {10},
    9567   year = {2002},
    9568   title = {Synergizing spatial and temporal texture},
    9569   pages = {1179--1191},
    9570   journal = {IEEE Transactions on Image Processing},
    9571   volume = {11},
    9572   author = {Peh, C.-H. and Loong-Fah Cheong}
    9573 }
    9574 @article{Lee1983,
    9575   year = {1983},
    9576   title = {Digital Image Smoothing and the Sigma Filter},
    9577   pages = {255--270},
    9578   journal = {Computer Vision, Graphics, and Image Processing},
    9579   volume = {24},
    9580   author = {Lee, J.-S.}
    9581 }
    9582 @inproceedings{Buhr2003,
    9583   month = {16-18 February},
    9584   year = {2003},
    9585   title = {Simple method for modulation transfer function determination of digital imaging detectors from edge images},
    9586   booktitle = {Proceedings of SPIE},
    9587   volume = {5030,3},
    9588   address = {San Diego, California, USA},
    9589   author = {Buhr, E. and {G\"unther}-Kohfahl, S. and Neitzel, U.}
    9590 }
    9591 @inproceedings{Lee1984,
    9592   year = {1984},
    9593   title = {{FCT} - a fast cosine transform},
    9594   booktitle = {Proc. IEEE ICASSP},
    9595   pages = {28A.3.1-28A.3.4},
    9596   annote = {key_fft},
    9597   author = {Lee, B.G.}
    9598 }
    9599 @article{Feret1931,
    9600   year = {1931},
    9601   title = {La Grosseur des Grains},
    9602   journal = {Assoc. Intern. Essais Math. 2D, Zurich},
    9603   author = {Feret, L.R.}
    9604 }
    9605 @article{Bunt2004,
    9606   year = {2004},
    9607   title = {Visualization of Molecular Activities Inside Living Cells with Fluorescent Labels},
    9608   pages = {205-280},
    9609   journal = {International Review of Cytology},
    9610   volume = {237},
    9611   author = {Bunt, G. and Wouters, F.S.}
    9612 }
    9613 @article{Vaidyanathan1987,
    9614   number = {3},
    9615   month = {July},
    9616   year = {1987},
    9617   title = {Quadrature Mirror Filter Banks, M-Band Extensions and Perfect-Reconstruction Techniques},
    9618   pages = {4--20},
    9619   journal = {IEEE Acoustics, Speech, and Signal Processing Magazine},
    9620   volume = {4},
    9621   author = {Vaidyanathan, P.P.}
    9622 }
    9623 @inproceedings{Knutsson2003,
    9624   series = {LNCS 2749},
    9625   month = {June 29 -July 2},
    9626   year = {2003},
    9627   title = {Loglets: Generalized Quadrature and Phase for Local Spatio-Temporal Structure Estimation},
    9628   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    9629   pages = {741-748},
    9630   editor = {{Big\"un}, J. and Gustavsson, T.},
    9631   address = {Berlin},
    9632   publisher = {Springer-Verlag},
    9633   author = {Knutsson, H. and Anderson, M.}
    9634 }
    9635 @article{Mokhtarian1992,
    9636   number = {8},
    9637   month = {August},
    9638   year = {1992},
    9639   title = {A Theory of Multiscale, Curvature-Based Shape Representation for Planar Curves},
    9640   pages = {789--805},
    9641   journal = {IEEE Transactions on Pattern Analysis and Machine Analysis},
    9642   volume = {14},
    9643   author = {Mokhtarian, F. and Machworth, A.K.}
    9644 }
    9645 @article{Lin1986,
    9646   year = {1986},
    9647   title = {Calibration of the operating parameters for an {HB5 STEM} instrument},
    9648   pages = {31-42},
    9649   journal = {Ultramicroscopy},
    9650   volume = {19},
    9651   author = {Lin, J.A. and Cowley, J.M.}
    9652 }
    9653 @article{Zack1977,
    9654   number = {7},
    9655   year = {1977},
    9656   title = {Automatic Measurement of Sister Chromatid Exchange Frequency},
    9657   pages = {741--753},
    9658   journal = {Journal of Histochemistry and Cytochemistry},
    9659   volume = {25},
    9660   author = {Zack, G.W. and Rogers, W.E. and Latt, S.A.}
    9661 }
    9662 @article{Bewersdorf2006,
    9663   year = {2006},
    9664   title = {Comparison of {I$^5$M} and {4Pi}-microscopy},
    9665   pages = {105-117},
    9666   journal = {Journal of Microscopy},
    9667   volume = {222},
    9668   author = {Bewersdorf, J. and Schmidt, R. and Hell, S.W.}
    9669 }
    9670 @inproceedings{Leung1998,
    9671   month = {June},
    9672   year = {1998},
    9673   title = {Contour Continuity in Region Based Image Segmentation},
    9674   booktitle = {5th. Euro. Conf. Computer Vision, Freiburg, Germany },
    9675   author = {Leung, T. and Malik, J.}
    9676 }
    9677 @article{Kempen2000,
    9678   number = {3},
    9679   year = {2000},
    9680   title = {Background estimation in nonlinear image restoration},
    9681   pages = {425-434},
    9682   journal = {Journal of the Optical Society of America},
    9683   volume = {17},
    9684   author = {Kempen, G.M.P. van and Vliet, L.J. van}
    9685 }
    9686 @article{Nellist2004,
    9687   year = {2004},
    9688   title = {Direct Sub-Angstrom Imaging of a Crystal Lattice},
    9689   pages = {1741},
    9690   journal = {Science},
    9691   volume = {305},
    9692   author = {Nellist, P.D. and Chisholm, M.F. and Dellby, N. and Krivanek, O.L. and Murfitt, M.F. and Szilagyi, Z.S. and Lupini, A.R. and Borisevick, A. and Sides, W.H. jr. and Pennycook, S.J. }
    9693 }
    9694 @article{Liu1997,
    9695   number = {8},
    9696   year = {1997},
    9697   title = {Dimension Estimation of Discrete-Time Fractional Brownian Motion with Application to Image Texture Classification},
    9698   pages = {1176-1184},
    9699   journal = {IEEE Transaction on Image Processing},
    9700   volume = {6},
    9701   author = {S-C. Liu and S. Chang}
    9702 }
    9703 @article{Keenan2004,
    9704   number = {3},
    9705   year = {2004},
    9706   title = {Accounting for Poisson noise in the multivariate analysis of {ToF-SIMS} spectrum images},
    9707   pages = {203-212},
    9708   journal = {Surface and Interface Analysis},
    9709   volume = {36},
    9710   author = {Keenan, M.R. and Kotula, P.G.}
    9711 }
    9712 @book{Gelfand1964,
    9713   year = {1964},
    9714   title = {Generalized Functions. Volume 1, Properties and Operations},
    9715   publisher = {Academic Press},
    9716   author = {{Gel'fand}, I.M. and Shilov, G.E.}
    9717 }
    9718 @book{Gelfand1966,
    9719   year = {1966},
    9720   title = {Generalized Functions. Volume 5, Integral Geometry and Representation Theory},
    9721   publisher = {Academic Press},
    9722   author = {{Gel'fand}, I.M. and Graev, M.I. and Vilenkin, N.Ya.}
    9723 }
    9724 @techreport{Lindeberg1998b,
    9725   number = {ISRN KTH/NA/P-98/14-SE},
    9726   month = {August},
    9727   year = {1998},
    9728   title = {Principles for Automatic Scale Selection},
    9729   address = {Stockholm, Sweden},
    9730   institution = {Computational Vision and Active Perception Laboratory, Royal Institute of Technology},
    9731   author = {Lindeberg, T.}
    9732 }
    9733 @article{Lindeberg1998a,
    9734   number = {2},
    9735   year = {1998},
    9736   title = {Edge Detection and Ridge Detection with Automatic Scale Selection},
    9737   pages = {117--154},
    9738   journal = {International Journal of Computer Vision},
    9739   volume = {30},
    9740   author = {Lindeberg, T.}
    9741 }
    9742 @article{Koenderink1999,
    9743   number = {2/3},
    9744   year = {1999},
    9745   title = {The Structure of Locally Orderless Images},
    9746   pages = {159--168},
    9747   journal = {International Journal of Computer Vision},
    9748   volume = {31},
    9749   author = {Koenderink, J.J. and Doorn, A.J. van}
    9750 }
    9751 @inproceedings{Kalitzin1997,
    9752   series = {Lecture Notes in Computer Science},
    9753   month = {July},
    9754   year = {1997},
    9755   title = {Invertible Orientation Bundles on 2D Scalar Images},
    9756   booktitle = {Proceedings of the First International Conference on Scale-Space Theory in Computer Vision},
    9757   pages = {77--88},
    9758   publisher = {Springer-Verlag},
    9759   author = {Kalitzin, S.N. and ter Haar Romeny, B.M. and Viergever, M.A.}
    9760 }
    9761 @article{Koenderink1992,
    9762   number = {6},
    9763   month = {June},
    9764   year = {1992},
    9765   title = {Generic Neighborhood Operators},
    9766   pages = {597--605},
    9767   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9768   volume = {14},
    9769   author = {Koenderink, J.J. and Doorn, A.J. van}
    9770 }
    9771 @article{Koenderink1990,
    9772   year = {1990},
    9773   title = {Receptive Field Families},
    9774   pages = {291--297},
    9775   journal = {Biological Cybernetics},
    9776   volume = {63},
    9777   author = {Koenderink, J.J. and Doorn, A.J. van}
    9778 }
    9779 @inproceedings{Haussecker1996,
    9780   series = {Proceedings in Artificial Intelligence 3},
    9781   month = {November 18--19},
    9782   year = {1996},
    9783   title = {A Tensor Approach for Local Structure Analysis in Multi-Dimensional Images},
    9784   booktitle = {Proceedings 3D Image Analysis and Synthesis},
    9785   pages = {171--178},
    9786   editor = {Girod, B. and Niemann, H. and Seidel, H.-P.},
    9787   author = {{Hau\ss ecker}, H. and {J\"ahne}, B.},
    9788   organization = {{Universit\"at} Erlangen-{N\"urnberg}}
    9789 }
    9790 @article{Kalitzin1999,
    9791   number = {2/3},
    9792   year = {1999},
    9793   title = {Invertible Apertured Orientation filters in Image Analysis},
    9794   pages = {145--158},
    9795   journal = {International Journal of Computer Vision},
    9796   volume = {31},
    9797   author = {Kalitzin, S.N. and Haar Romeny, B. ter and Viergever, M.A.}
    9798 }
    9799 @inproceedings{Haussecker1997,
    9800   series = {Informatik Aktuell},
    9801   month = {September 15-17},
    9802   year = {1997},
    9803   title = {A tensor approach for precise computation of dense displacement vector fields},
    9804   booktitle = {Proc. Mustererkennung 1997 (Braunschweig, Germany)},
    9805   pages = {199--208},
    9806   editor = {Paulus, E. and Wahl, F.M.},
    9807   publisher = {Springer},
    9808   author = {{Hau\ss ecker}, H. and {J\"ahne}, B.}
    9809 }
    9810 @inproceedings{Vliet1993a,
    9811   year = {1993},
    9812   title = {Curvature and Bending Energy in Digitized 2D and 3D Images},
    9813   booktitle = {8th Scandinavian Conference on Image Analysis, {Troms\o } Norway},
    9814   pages = {1403--1410},
    9815   author = {Vliet, L.J. van and Verbeek, P.W.}
    9816 }
    9817 @article{Cam1994,
    9818   number = {3},
    9819   year = {1994},
    9820   title = {Conformational Analysis of a 139 Base-pair {DNA} Fragment Containing a Single-stranded Break and Its Interaction with {Human Poly(ADP-ribose)} Polymerase},
    9821   pages = {1062-1071},
    9822   journal = {Journal of Molecular Biology},
    9823   volume = {235},
    9824   author = {Cam, E. le and Fack, F. and Menissier-de Murcia, J. and Cognet, J.A.H. and Barbin, A. and Sarantoglou, V. and Revet, B. and Delain, E. and Murcia, G. de}
    9825 }
    9826 @article{Digman2005,
    9827   year = {2005},
    9828   title = {Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure},
    9829   journal = {Biophysical Journal - Biophysical Letters},
    9830   author = {Digman, M.A. and Sengupta, P. and Wiseman, P.W. and Brown, C.M. and Howritz, A.R. and Grattown, E.}
    9831 }
    9832 @article{Bangham1996a,
    9833   number = {5},
    9834   year = {1996},
    9835   title = {Scale-Space From Nonlinear Filters},
    9836   pages = {520--528},
    9837   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9838   volume = {18},
    9839   author = {Bangham, J.A. and Ling, P.D. and Harvey, R.}
    9840 }
    9841 @article{Talbot2000,
    9842   month = {December},
    9843   year = {2000},
    9844   title = {Image Analysis of Insulation Mineral Fibres},
    9845   pages = {251--268},
    9846   journal = {Journal of Microscopy},
    9847   volume = {200, Pt 3},
    9848   author = {Talbot, H. and Lee, T. and Jeulin, D. and Hanton, D. and Hobbs, L.W.}
    9849 }
    9850 @article{Dietrich2004,
    9851   number = {14},
    9852   year = {2004},
    9853   title = {Nanoarrays: A Method for Performing Enzymatic Assays},
    9854   pages = {4112-4117},
    9855   journal = {Analytical Chemistry},
    9856   volume = {76},
    9857   author = {Dietrich, H.R.C. and Knoll, J. and Doel, L.R. van den and Dedem, G.W.K. van and Daran-Lapujade, P.A.S. and Vliet, L.J. van and Moerman, R. and Pronk, J.R. and Young, I.T.}
    9858 }
    9859 @inproceedings{Laptev2003,
    9860   series = {Lecture Notes on Computer Science },
    9861   year = {2003},
    9862   title = {Interest point detection and scale-selection in space-time},
    9863   booktitle = {Proceedings of the fourth Int. Conf. on Scale Space},
    9864   pages = {372-387},
    9865   editor = {Griffin, L.D. and Lillholm, M.},
    9866   volume = {2695},
    9867   address = {Isle of Skye, United Kingdom},
    9868   author = {Laptev, I. and Lindeberg, T.}
    9869 }
    9870 @article{Thomson1982,
    9871   number = {9},
    9872   month = {September},
    9873   year = {1982},
    9874   title = {Spectrum Estimation and Harmonic Analysis},
    9875   pages = {1055--1096},
    9876   journal = {Proceedings of the IEEE},
    9877   volume = {70},
    9878   author = {Thomson, D.J.}
    9879 }
    9880 @misc{Dorst1999a,
    9881   year = {1999},
    9882   title = {{Clifford} Algebra: a Practical Tool for Efficient Geometrical Representation},
    9883   note = {Tutorial presentation},
    9884   author = {Dorst, L.}
    9885 }
    9886 @phdthesis{Hansen1995,
    9887   year = {1995},
    9888   title = {Spatial Statistics for Network Structures in Processed Milk},
    9889   address = {Copenhagen, Denmark},
    9890   school = {The Royal Veterinary and Agricultural University Copenhagen},
    9891   author = {Hansen, M.B.}
    9892 }
    9893 @article{Hansen1999,
    9894   number = {1},
    9895   year = {1999},
    9896   title = {First Contact Distributions for Spatial Patterns: Regularity and Estimation},
    9897   pages = {15--33},
    9898   journal = {Advances in Applied Probability},
    9899   volume = {31},
    9900   author = {Hansen, M.B. and Baddeley, A.J. and Gill, R.D.}
    9901 }
    9902 @article{Stockman1977,
    9903   number = {11},
    9904   year = {1977},
    9905   title = {Equivalence of {Hough} Curve Detection to Template Matching},
    9906   pages = {820--822},
    9907   journal = {Communications of the {ACM}},
    9908   volume = {20},
    9909   annote = {key_radon},
    9910   author = {Stockman, G.C. and Agrawala, A.K.}
    9911 }
    9912 @article{Li1994a,
    9913   number = {12},
    9914   year = {1994},
    9915   title = {Approximation of an Arbitrary Filter and its Recursive Implementation},
    9916   pages = {1767--1774},
    9917   journal = {Pattern Recognition},
    9918   volume = {27},
    9919   author = {Li, B.C. and Ma, S.D.}
    9920 }
    9921 @article{Endres1997,
    9922   number = {1},
    9923   month = {January/February},
    9924   year = {1997},
    9925   title = {Incorporating Pore Geometry and Fluid Pressure Communication into Modeling the Elastic Behavior of Porous Rocks},
    9926   pages = {106--117},
    9927   journal = {Geophysics},
    9928   volume = {62},
    9929   author = {Endres, A.L. and Knight, R.J.}
    9930 }
    9931 @article{Hansen1997,
    9932   number = {3},
    9933   year = {1997},
    9934   title = {Understanding the {Hough} Transform: {Hough} Cell Support and its Utilization},
    9935   pages = {205--218},
    9936   journal = {Image and Vision Computing},
    9937   volume = {15},
    9938   author = {Hansen, K. and Andersen, J.D.}
    9939 }
    9940 @article{Maxwell1870,
    9941   number = {269},
    9942   year = {1870},
    9943   title = {On Hills and Dales},
    9944   pages = {421--427},
    9945   journal = {The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science},
    9946   volume = {40},
    9947   author = {Maxwell, J.C.}
    9948 }
    9949 @article{Qian2000,
    9950   year = {2000},
    9951   title = {Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials},
    9952   pages = {137-143},
    9953   journal = {Biophysical Journal},
    9954   volume = {79},
    9955   author = {Qian, H. and Elson, E.L.}
    9956 }
    9957 @article{Jain2000,
    9958   number = {1},
    9959   year = {2000},
    9960   title = {Statistical Pattern Recognition: A Review},
    9961   pages = {4--37},
    9962   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9963   volume = {22},
    9964   author = {Jain, A.K. and Duin, R.P.W. and Mao, J.}
    9965 }
    9966 @article{Watson1953,
    9967   number = {4356},
    9968   month = {April},
    9969   year = {1953},
    9970   title = {Molecular Structure of Nucleic Acids},
    9971   pages = {737--738},
    9972   journal = {Nature},
    9973   volume = {171},
    9974   author = {Watson, J.D. and Crick, F.H.C.}
    9975 }
    9976 @inproceedings{Knutsson1989kort,
    9977   year = {1989},
    9978   title = {Representing Local Structure Using Tensors },
    9979   booktitle = {SCIA'89},
    9980   pages = {244--251},
    9981   author = {Knutsson, H.}
    9982 }
    9983 @article{Chadoeuf2000,
    9984   month = {October},
    9985   year = {2000},
    9986   title = {Testing Local Dependence of Spatial Structures on Images},
    9987   pages = {32--41},
    9988   journal = {Journal of Microscopy},
    9989   volume = {200, Pt 1},
    9990   author = {Chadoeuf, J. and Brix, A. and Pierret, A. and Allard, D.}
    9991 }
    9992 @article{Brock2003,
    9993   year = {2003},
    9994   title = {Quantitative image analysis of cellular protein translocation induced by magnetic microspheres: Application to the EGF receptor},
    9995   pages = {1-11},
    9996   journal = {Cytometry Part A},
    9997   volume = {52A},
    9998   author = {Brock, R. and Jovin, T.M. }
    9999 }
    10000 @article{Costes2004,
    10001   year = {2004},
    10002   title = {Automatic and Quantitative Measurement of Protein-Protein Colocalization in Live Cells},
    10003   pages = {3993-4003},
    10004   journal = {Biophysical Journal},
    10005   volume = {86},
    10006   author = {Costes, S.V. and Daelemans, D. and Cho, E.H. and Dobbin, Z. and Pavlakis, G. and Lockett, S.}
    10007 }
    10008 @article{Zhou2003,
    10009   year = {2003},
    10010   title = {Cytoplasmic Ployhedrosis Virus Structure at 8 by Electron Cryomicroscopy: Structural Basis of Capsid Stability and {mRNA} Processing Regulation},
    10011   pages = {651-663},
    10012   journal = {Structure},
    10013   volume = {1},
    10014   author = {Zhou, Z.H. and Zhang, H. and Jakana, J. and Lu, X.-Y. and Zhang, J.-Q.}
    10015 }
    10016 @article{Zhou2000,
    10017   year = {2000},
    10018   title = {Seeing the Herpesvirus Capsid at 8.5},
    10019   pages = {877-880},
    10020   journal = {Science},
    10021   volume = {288},
    10022   author = {Zhou, Z.H. and Dougherty, M. Jakana, J. and He, J. and Rixon, F.J. and Chiu, W.}
    10023 }
    10024 @article{Zhou2001,
    10025   number = {26},
    10026   year = {2001},
    10027   title = {The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes},
    10028   pages = {14802-14807},
    10029   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    10030   volume = {98},
    10031   author = {Zhou, Z.H. and McCarthy, D.B. and O'Conor, C.M. and Reed, L.J. and Stoops, J.K.}
    10032 }
    10033 @article{Medintz2004,
    10034   year = {2004},
    10035   title = {Reversible Modulation of Quantum Dot Photoluminescence Using a Protein- Bound Photochromic Fluorescence Resonance Energy Transfer Acceptor},
    10036   pages = {30-31},
    10037   journal = {Journal of the American Chemical Society},
    10038   volume = {126},
    10039   author = {Medintz, I.L. and Trammell, S.A. and Mattoussi, H. and Mauro, J.M.}
    10040 }
    10041 @article{Cherny2005,
    10042   number = {3},
    10043   year = {2005},
    10044   title = {Sequestering of p53 into {DNA}-protein filaments revealed by electron microscopy},
    10045   pages = {261-271},
    10046   journal = {Biophysical Chemistry},
    10047   volume = {114},
    10048   author = {Cherny, D.I. and Brzdov4, M. and Pale\v{c}ek, J. and Pale\v{c}ek, E. and Jovin, T.M.}
    10049 }
    10050 @article{Cherny2004,
    10051   number = {4},
    10052   year = {2004},
    10053   title = {Double-stranded {DNA} stimulates the fibrillation of $\alpha$-synuclein in vitro and is associated with the mature fibrils: An electron microscopy study},
    10054   pages = {929-938},
    10055   journal = {Journal of Molecular Biology},
    10056   volume = {344},
    10057   author = {Cherny, D.I. and Hoyer, W. and Subramaniam, V. and Jovin, T.M.}
    10058 }
    10059 @article{Cherny2001,
    10060   number = {2},
    10061   year = {2001},
    10062   title = {Electron and scanning force microscopy studies of alterations in supercoiled {DNA} tertiary structure},
    10063   pages = {295-307},
    10064   journal = {Journal of Molecular Biology},
    10065   volume = {313},
    10066   author = {Cherny, D.I. and Jovin, T.M.}
    10067 }
    10068 @article{Comer1999,
    10069   number = {3},
    10070   year = {1999},
    10071   title = {Morphological Operations for Color Image Processing},
    10072   pages = {279-189},
    10073   journal = {Journal of Electronic Imaging},
    10074   volume = {8},
    10075   author = {Comer, M. L. and Delp, E. J.}
    10076 }
    10077 @inproceedings{Farnebaeck2000,
    10078   month = {September},
    10079   year = {2000},
    10080   title = {Fast and {A}ccurate {M}otion {E}stimation using {O}rientation {T}ensors and {P}arametric {M}otion {M}odels},
    10081   booktitle = {Proceedings of 15th International Conference on Pattern Recognition},
    10082   pages = {135--139},
    10083   volume = {1},
    10084   address = {Barcelona, Spain},
    10085   annote = {Also as Technical Report LiTH-ISY-R-2254},
    10086   author = {G. {Farneb\"ack}},
    10087   organization = {IAPR}
    10088 }
    10089 @inproceedings{Farnebaeck2003,
    10090   series = {LNCS 2749},
    10091   month = {June 29 -July 2},
    10092   year = {2003},
    10093   title = {Two-Frame Motion Estimation Based on Polynomial Expansion},
    10094   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    10095   pages = {363-370},
    10096   editor = {{Big\"un}, J. and Gustavsson, T.},
    10097   address = {Berlin},
    10098   publisher = {Springer-Verlag},
    10099   author = {{Farneb\"ack}, G.}
    10100 }
    10101 @article{Freitag2005,
    10102   year = {2005},
    10103   title = {Breaking the spherical and chromatic aberration barrier in transmission electron microscopy},
    10104   pages = {209-214},
    10105   journal = {Ultramicroscopy},
    10106   volume = {102},
    10107   author = {Freitag, B. and Kujawa, S. and Mul, P.M. and Ringnalda, J. and Tiemeijer, P.C.}
    10108 }
    10109 @article{Lidke2005,
    10110   number = {9},
    10111   year = {2005},
    10112   title = {The role of photon statistics in fluorescence anisotropy imaging},
    10113   pages = {1237-1245},
    10114   journal = {IEEE Transactions on Image Processing},
    10115   volume = {14},
    10116   author = {Lidke, K.A. and Rieger, B. and Lidke, D.S. and Jovin, T.M.}
    10117 }
    10118 @article{Lidke2003,
    10119   number = {5},
    10120   year = {2003},
    10121   title = {Imaging molecular interactions in cells by dynamic and static fluorescence anisotropy ({rFLIM} and {emFRET})},
    10122   pages = {1020-1027},
    10123   journal = {Biochemical Society Transactions},
    10124   volume = {31},
    10125   author = {Lidke, D.S. and Nagy, P. and Barisas, B.G. and Heintzmann, R. and Post, J.N. and Lidke, K.A. and Clayton, A.H.A. and Arndt-Jovin, D.J. and Jovin, T.M.}
    10126 }
    10127 @article{Lidke2004,
    10128   number = {2},
    10129   year = {2004},
    10130   title = {Quantum dot ligands provide new insights into {erbB/HER} receptor-mediated signal transduction},
    10131   pages = {198-203},
    10132   journal = {Nature Biotechnology},
    10133   volume = {22},
    10134   author = {Lidke, D.S. and Nagy, P. and Heintzmann, R. and Arndt-Jovin, D.J. and Post, J.N. and Grecco, H. and Jares-Erijman, E.A. and Jovin, T.M.}
    10135 }
    10136 @article{Dubuc2001a,
    10137   number = {1--2},
    10138   year = {2001},
    10139   title = {Complexity, Confusion, and Perceptual Grouping. Part {II}: Mapping Complexity},
    10140   pages = {83--116},
    10141   journal = {Journal of Mathematical Imaging and Vision},
    10142   volume = {15},
    10143   author = {Dubuc, B. and Zucker, S.W.}
    10144 }
    10145 @article{Larkin2001a,
    10146   number = {8},
    10147   month = {August},
    10148   year = {2001},
    10149   title = {Natural Demodulation of Two-Dimensional Fringe Patterns. {II}. Stationary Phase Analysis of the Spiral Phase Quadrature Transform},
    10150   pages = {1871--1881},
    10151   journal = {Journal of the Optical Society of America A},
    10152   volume = {18},
    10153   author = {Larkin, K.G.}
    10154 }
    10155 @article{Salden1998,
    10156   year = {1998},
    10157   title = {Differential Integral Geometry of Linear Scale-Space},
    10158   pages = {5--27},
    10159   journal = {Journal of Mathematical Imaging and Vision},
    10160   volume = {9},
    10161   author = {Salden, A.H. and ter Haar Romeny, B.M. and Viergever, M.A. }
    10162 }
    10163 @misc{Lehar1994,
    10164   year = {1994},
    10165   title = {Harmonic Resonance in Visual Perception Suggests a Novel Form of Neural Communication},
    10166   note = {Rejected. Department of Cognitive and Neural Systems, Center for Adaptive Systems, Boston, U.S.A.},
    10167   author = {Lehar, S.}
    10168 }
    10169 @techreport{Luengo2003d,
    10170   month = {May},
    10171   year = {2003},
    10172   title = {Underestimation of the Radius in the Radon Transform for Circles and Spheres},
    10173   note = {Technical Report PH-2003-02},
    10174   institution = {Pattern Recognition Group, Delft University of Technology},
    10175   author = {Luengo Hendriks, C.L. and Ginkel, M. van and Vliet, L.J. van}
    10176 }
    10177 @inproceedings{Luengo2003c,
    10178   series = {Lecture Notes on Computer Science},
    10179   year = {2003},
    10180   title = {Discrete Morphology with Line Structuring Elements},
    10181   booktitle = {Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, {\footnotesize CAIP} 2003},
    10182   pages = {722-729},
    10183   editor = {Petkov, N. and Westenberg, M.A.},
    10184   volume = {2756},
    10185   address = {Berlin},
    10186   publisher = {Springer-Verlag},
    10187   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    10188 }
    10189 @article{Stark1996,
    10190   year = {1996},
    10191   title = {Electron radiation damage to protein crystals of bacteriorhodopsin at different temperatures},
    10192   pages = {75-70},
    10193   journal = {Ultramicroscopy},
    10194   volume = {63},
    10195   author = {Stark, H. and Zemlin, F. and Boettcher, C.}
    10196 }
    10197 @inproceedings{Luengo2003b,
    10198   series = {Lecture Notes on Computer Science},
    10199   year = {2003},
    10200   title = {The Generalized Radon Transform: Sampling and Memory Considerations},
    10201   booktitle = {Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, {\footnotesize CAIP} 2003},
    10202   pages = {681-688},
    10203   editor = {Petkov, N. and Westenberg, M.A.},
    10204   volume = {2756},
    10205   address = {Berlin},
    10206   publisher = {Springer-Verlag},
    10207   author = {Luengo Hendriks, C.L. and Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van}
    10208 }
    10209 @article{Cariolaro1998,
    10210   number = {12},
    10211   month = {December},
    10212   year = {1998},
    10213   title = {A Unified Framework for the Fractional {Fourier} Transform},
    10214   pages = {3206--3219},
    10215   journal = {IEEE Transactions on Signal Processing},
    10216   volume = {46},
    10217   author = {Cariolaro, G. and Erseghe, T. and Kraniauskas, P. and Laurenti, N.}
    10218 }
    10219 @article{Chen1977,
    10220   number = {9},
    10221   month = {September},
    10222   year = {1977},
    10223   title = {A Fast Computational Algorithm for the Discrete Cosine Transform},
    10224   pages = {1004--1009},
    10225   journal = {IEEE Transactions on Communications},
    10226   volume = {25},
    10227   annote = {key_fft},
    10228   author = {Chen, W.-H. and Harrison Smith, C. and Fralick, S.C.}
    10229 }
    10230 @article{Beckers1990,
    10231   year = {1990},
    10232   title = {The Probability of a Random Straight Line in Two and Three Dimensions},
    10233   pages = {233--240},
    10234   journal = {Pattern Recognition Letters},
    10235   volume = {11},
    10236   author = {Beckers, A.L.D. and Smeulders, A.W.M.}
    10237 }
    10238 @article{Aert2002a,
    10239   year = {2002},
    10240   title = {Optimal experimental design of {STEM} measurement of atom column positions},
    10241   pages = {273-289},
    10242   journal = {Ultramicroscopy},
    10243   volume = {90},
    10244   author = {Aert, S. van and Dekker, A.J. den and Dyck, D. van and Bos, A. van den}
    10245 }
    10246 @article{Mallat1989,
    10247   number = {7},
    10248   month = {July},
    10249   year = {1989},
    10250   title = {A Theory for Multiresolution Signal Decomposition: The Wavelet Representation},
    10251   pages = {674--693},
    10252   journal = {IEEE Transaction on Pattern Analysis and Machine Intelligence},
    10253   volume = {11},
    10254   author = {Mallat, S.G.}
    10255 }
    10256 @book{Ripley1988,
    10257   year = {1988},
    10258   title = {Statistical Inference for Spatial Processes},
    10259   publisher = {Cambridge University Press},
    10260   author = {Ripley, B.D.}
    10261 }
    10262 @book{Landau1959,
    10263   edition = {first},
    10264   year = {1959},
    10265   title = {Theory of Elasticity},
    10266   publisher = {Pergamon Press},
    10267   author = {Landau, L.D. and Lifshitz, E.M.}
    10268 }
    10269 @article{Oudejans2000,
    10270   year = {2000},
    10271   title = {Errors in judging 'offside' in football},
    10272   pages = {33},
    10273   journal = {Nature},
    10274   volume = {404},
    10275   author = {Oudejans, R.R.D. and Verheijen, R. and Bakker, F.C. and Gerrits, J.C. and Steinbrcker, M. and Beek, P.J.}
    10276 }
    10277 @article{Kubinova2001,
    10278   number = {6},
    10279   year = {2001},
    10280   title = {Confocal Microscopy and Stereology: Estimating Volume, Number, Surface Area and Length by Virtual Test Probes Applied to Three-Dimensional Images},
    10281   pages = {425--435},
    10282   journal = {Microscopy Research and Technique},
    10283   volume = {53},
    10284   author = {Kubinova, L. and Janacek, J.}
    10285 }
    10286 @article{Duynhoven2003,
    10287   number = {4},
    10288   year = {2003},
    10289   title = {Quantitative Assessment of Gas Cell Development during the Proofing of Dough by Magnetic Resonance Imaging and Image Analysis},
    10290   pages = {360-369},
    10291   journal = {Cereal Chemistry},
    10292   volume = {80},
    10293   author = {Duynhoven, P.M. van and Kempen, G.M.P. van and Sluis, R. van and Rieger, B. and Weegels, P. and Vliet, L.J. van and Nicolay, K.}
    10294 }
    10295 @misc{DMD,
    10296   title = {www.dlp.com},
    10297   author = {Texas Instruments Technology}
    10298 }
    10299 @article{Merlin1975,
    10300   month = {January},
    10301   year = {1975},
    10302   title = {A Parallel Mechanism for Detecting Curves in Pictures},
    10303   pages = {96--98},
    10304   journal = {IEEE Transactions on Computers},
    10305   volume = {24},
    10306   author = {Merlin, P.M. and Farber, D.J.}
    10307 }
    10308 @inproceedings{Meyer1999,
    10309   series = {Lecture Notes on Computer Science},
    10310   month = {September},
    10311   year = {1999},
    10312   title = {Multiscale Morphological Segmentations Based on Watershed, Flooding, and Eikonal PDE},
    10313   booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)},
    10314   pages = {351--362},
    10315   editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
    10316   volume = {1682},
    10317   address = {Berlin Heidelberg},
    10318   publisher = {Springer-Verlag},
    10319   author = {Meyer, Fernand and Maragos, Petros}
    10320 }
    10321 @article{Borgefors2003,
    10322   number = {1},
    10323   year = {2003},
    10324   title = {Weighted Digital Distance Transforms in Four Dimensions},
    10325   pages = {161--176},
    10326   journal = {Discrete Applied Mathematics},
    10327   volume = {125},
    10328   author = {Borgefors, G.}
    10329 }
    10330 @incollection{Proesmans1994,
    10331   year = {1994},
    10332   title = {Coupled geometry-driven diffusion equations for low-level vision},
    10333   booktitle = {Geometry-driven diffusion in computer vision},
    10334   pages = {191--228},
    10335   editor = {Ter Haar Romeny B.M.},
    10336   chapter = {9},
    10337   publisher = {Kluwer Academic Publishers},
    10338   author = {Proesmans, M. and Pauwels, P. and van Gool, L.}
    10339 }
    10340 @article{Smith1997,
    10341   number = {1},
    10342   year = {1997},
    10343   title = {SUSAN - A New Approach to Low Level Image Processing},
    10344   pages = {45--78},
    10345   journal = {International Journal of Computer Vision},
    10346   volume = {23},
    10347   author = {Smith, S.M., Brady J.M.}
    10348 }
    10349 @article{Catte1992,
    10350   number = {1},
    10351   month = {February},
    10352   year = {1992},
    10353   title = {Image selective smoothing and edge detection by nonlinear diffusion},
    10354   pages = {182--193},
    10355   journal = {SIAM J. Numer. Anal.},
    10356   volume = {29},
    10357   author = {{Catt\'e}, F. and Lions, P. and Morel, J. and Coll, T.}
    10358 }
    10359 @article{Radon1917,
    10360   year = {1917},
    10361   title = {{\"Uber} die {B}estimmung von {F}unktionen durch ihre {I}ntegralwerte {l\"angs} gewisser {M}annigfaltigkeiten},
    10362   pages = {262--277},
    10363   journal = {Berichte {S\"achsische} Akademie der Wissenschaften, Leipzig, Mathematisch-Physikalische Klasse},
    10364   volume = {69},
    10365   author = {Radon, J.}
    10366 }
    10367 @techreport{MuntheKaas1995,
    10368   year = {1995},
    10369   title = {Coordinate Free Numerics. Part 1: How to Avoid Index Wrestling in Tensor Computations},
    10370   institution = {Department of Informatics, University of Bergen, Norway},
    10371   author = {Munthe-Kaas, H. and Haveraaen, M.}
    10372 }
    10373 @inproceedings{Ginkel1999kort,
    10374   year = {1999},
    10375   title = {Curvature Estimation from Orientation Fields },
    10376   booktitle = {SCIA'99 },
    10377   pages = {545--551 },
    10378   editor = {Ersboll, B.K. and Johansen, P. },
    10379   publisher = {Pattern Recognition Society of Denmark},
    10380   author = {Ginkel, M. van and Weijer, J. van de and Verbeek, P.W. and Vliet, L.J. van }
    10381 }
    10382 @article{Squire1999,
    10383   year = {1999},
    10384   title = {Three Dimensional Image Restoration in Fluorescence Lifetime Imaging Microscopy},
    10385   pages = {36--49},
    10386   journal = {Journal of Microscopy},
    10387   volume = {193},
    10388   author = {Squire, A. and Bastiaens, P.I.H.}
    10389 }
    10390 @article{Larkin2005,
    10391   number = {20},
    10392   year = {2005},
    10393   title = {Uniform estimation of orientation using local and nonlocal {2-D} energy operators},
    10394   pages = {8097-8121},
    10395   journal = {Optics Express},
    10396   volume = {13},
    10397   author = {Larkin, K.G.}
    10398 }
    10399 @article{Babaud1986,
    10400   number = {1},
    10401   month = {January},
    10402   year = {1986},
    10403   title = {Uniqueness of the {G}aussian Kernel for Scale-Space Filtering},
    10404   pages = {26--33},
    10405   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    10406   volume = {8},
    10407   author = {Babaud, J. and Witkin, A.P. and Baudin, M. and Duda, R.O.}
    10408 }
    10409 @article{Grossman1984,
    10410   number = {4},
    10411   month = {July},
    10412   year = {1984},
    10413   title = {Decomposition of {Hardy} Functions into Square Integrable Wavelets of Constant Shape},
    10414   pages = {723--736},
    10415   journal = {{SIAM} Journal on Mathematical Analysis},
    10416   volume = {15},
    10417   author = {Grossman, A. and Morlet, J.}
    10418 }
    10419 @article{OlivoMarin2002,
    10420   number = {9},
    10421   month = {September},
    10422   year = {2002},
    10423   title = {Extraction of Spots in Biological Images using Multiscale Products},
    10424   pages = {1989--1996},
    10425   journal = {Pattern Recognition},
    10426   volume = {35},
    10427   author = {Olivo-Marin, J.-C.}
    10428 }
    10429 @article{Larkin2001,
    10430   number = {8},
    10431   month = {August},
    10432   year = {2001},
    10433   title = {Natural Demodulation of Two-Dimensional Fringe Patterns. {I}. General Background of the Spiral Phase Quadrature Transform},
    10434   pages = {1862--1870},
    10435   journal = {Journal of the Optical Society of America A},
    10436   volume = {18},
    10437   author = {Larkin, K.G. and Bone, D.J. and Oldfield, M.A.}
    10438 }
    10439 @article{Nakajima2003,
    10440   year = {2003},
    10441   title = {Physics-based flow estimation of fluids},
    10442   pages = {1203-1212},
    10443   journal = {Pattern Recognition},
    10444   volume = {36},
    10445   author = {Nakajima, Y. and Inomata, H. and Nogawa, H. and Sato, Y. and Tamura, S. and Okazaki, K. and Torii, S.}
    10446 }
    10447 @article{Garini2005,
    10448   number = {1},
    10449   year = {2005},
    10450   title = {From micro to nano: recent advances in high-resolution microscopy},
    10451   pages = {3-12},
    10452   journal = {Current Opinion in Biotechnology},
    10453   volume = {16},
    10454   author = {Garini, Y. and Vermolen, B.J. and Young, I.T.}
    10455 }
    10456 @article{Duhamel1990,
    10457   year = {1990},
    10458   title = {Fast {F}ourier transforms: a tutorial review and a state of the art},
    10459   pages = {259--299},
    10460   journal = {Signal Processing},
    10461   volume = {19},
    10462   annote = {key_fft},
    10463   author = {Duhamel. P. and Vetterli, M.}
    10464 }
    10465 @article{Martinez2004,
    10466   year = {2004},
    10467   title = {Design of {Wien} filters with high resolution},
    10468   pages = {105-114},
    10469   journal = {Ultramicroscopy},
    10470   volume = {100},
    10471   author = {Martinez, G. and Tsuno, K.}
    10472 }
    10473 @inproceedings{Tanaka1986,
    10474   year = {1986},
    10475   title = {A Rotation Method for Raster Image Using Skew Transformation},
    10476   booktitle = {CVPR'86, IEEE Conference on Computer Vision and Pattern Recognition},
    10477   pages = {272--277},
    10478   author = {Tanaka, A. and Kameyama, M. and Kazama, S. and Watanabe, O.}
    10479 }
    10480 @article{Nyquist1928,
    10481   year = {1928},
    10482   title = {Certain Topics in Telegraph Transmission Theory},
    10483   pages = {617--644},
    10484   note = {[reprinted in: Proceedings of the IEEE, vol. 90, no. 2, pp. 280-305, February 2002]},
    10485   journal = {Transactions of the AIEE},
    10486   author = {Nyquist, H.}
    10487 }
    10488 @article{Thurnhofer1996,
    10489   number = {6},
    10490   month = {June},
    10491   year = {1996},
    10492   title = {A General Framework for Quadratic {V}olterra Filter for Edge Enhancement},
    10493   pages = {950--963},
    10494   journal = {IEEE Transactions on Image Processing},
    10495   volume = {5},
    10496   author = {Thurnhofer, S. and Mitra, S.K.}
    10497 }
    10498 @article{Kybic2002,
    10499   number = {8},
    10500   year = {2002},
    10501   title = {Generalized sampling: A variational approach - Part I: Theory},
    10502   pages = {1965--1976},
    10503   journal = {IEEE Transactions on Signal Processing},
    10504   volume = {50},
    10505   author = {Kybic, J. and Blu, T. and Unser, M.}
    10506 }
    10507 @article{Maybank1986,
    10508   year = {1986},
    10509   title = {Optical Flow and the Taylor Expansion},
    10510   pages = {243-246},
    10511   journal = {Pattern Recognition Letters},
    10512   volume = {4},
    10513   author = {Maybank, S.J.}
    10514 }
    10515 @inproceedings{Breen1996,
    10516   year = {1996},
    10517   title = {An Attribute-Based Approach to Mathematical Morphology},
    10518   booktitle = {Mathematical Morphology and its Applications to Image and Signal Processing},
    10519   pages = {41-48},
    10520   editor = {Maragos, P. and Schafer, R. W. and Akmal Butt, M.},
    10521   address = {Boston},
    10522   publisher = {Kluwer Academic Publishers},
    10523   author = {Breen, E. J. and Jones, R.}
    10524 }
    10525 @inproceedings{Ronse1986,
    10526   year = {1986},
    10527   title = {Erosion of Narrow Image Features by Combination of Local Low Rank and Max Filters},
    10528   booktitle = {Proceedings of the Second IEE International Conference on Image Processing and its Applications},
    10529   pages = {77-81},
    10530   address = {London},
    10531   author = {Ronse, C.}
    10532 }
    10533 @article{Khaneja1998,
    10534   number = {11},
    10535   year = {1998},
    10536   title = {Dynamic Programming Generation of Curves on Brain Surfaces},
    10537   pages = {1260--1265},
    10538   journal = {IEEE Transaction on Pattern Analysis and Machine Intelligence},
    10539   volume = {20},
    10540   author = {Khaneja, N. and Miller, M. I. and Grenander, U.}
    10541 }
    10542 @article{Nogales2001,
    10543   year = {2--1},
    10544   title = {Molecular Machines: Putting the Pieces Together},
    10545   pages = {F1-F10},
    10546   journal = {Journal of Cell Biology},
    10547   volume = {152},
    10548   author = {Nogales, E. and Grigorieff, N.}
    10549 }
    10550 @article{Campbell2001,
    10551   number = {6},
    10552   year = {2001},
    10553   title = {Spontaneous Assembly of Magnetic {LEGO} Bricks},
    10554   pages = {321--323},
    10555   journal = {The Chemical Educator},
    10556   volume = {6},
    10557   author = {Campbell, D.J. and Freidinger, E.R. and Querns, M.K.}
    10558 }
    10559 @article{Pike1995,
    10560   number = {3},
    10561   year = {1995},
    10562   title = {Plan 9 from {Bell} Labs},
    10563   pages = {221--254},
    10564   journal = {Computing Systems},
    10565   volume = {8},
    10566   author = {Pike, R. and Presotto, D. and Dorward, S. and Flandrena, B. and Thompson, K. and Trickey, H. and Winterbottom, P.}
    10567 }
    10568 @article{Jiang2003,
    10569   year = {2003},
    10570   title = {Applications of a bilateral denoising filter in biological electron microscopy},
    10571   pages = {114-122},
    10572   journal = {Journal of Structural Biology},
    10573   volume = {144},
    10574   author = {Jiang, W. and Baker, M.L. and Wu, Q. and Bajaj, C. and Chiu, W.}
    10575 }
    10576 @misc{Koenderink1988,
    10577   year = {1988},
    10578   title = {Image Structure},
    10579   howpublished = {NATO ASI Series, vol. F39, Mathematics and Computer Science in Medical Imaging, Springer-Verlag},
    10580   author = {Koenderink, J.J.}
    10581 }
    10582 @article{Back1997,
    10583   number = {4},
    10584   month = {Aug},
    10585   year = {1997},
    10586   title = {A first application of independent component analysis to extracting structure from stock returns},
    10587   pages = {473-484},
    10588   journal = {International Journal of Neural Systems},
    10589   volume = {8},
    10590   author = {Back, A. D. and Weigend, A. S.}
    10591 }
    10592 @article{Koenderink1984,
    10593   year = {1984},
    10594   title = {The Structure of Images},
    10595   pages = {363--370},
    10596   journal = {Biological Cybernetics},
    10597   volume = {50},
    10598   author = {Koenderink, J.J.}
    10599 }
    10600 @article{Koenderink1987,
    10601   year = {1987},
    10602   title = {Representation of Local Geometry in the Visual System},
    10603   pages = {367--375},
    10604   journal = {Biological Cybernetics},
    10605   volume = {55},
    10606   author = {Koenderink, J.J. and Doorn, A.J. van}
    10607 }
    10608 @article{Jarvis1976,
    10609   month = {August},
    10610   year = {1976},
    10611   title = {A New Technique for Displaying Continuous Tone Images on a Bilevel Display},
    10612   pages = {891--898},
    10613   journal = {IEEE Transactions on Communications},
    10614   author = {Jarvis, J.F. and Roberts, C.S.}
    10615 }
    10616 @article{Saito1994,
    10617   number = {11},
    10618   year = {1994},
    10619   title = {New algorithms for euclidean distance transformation of an n-dimensional digitized picture with applications},
    10620   pages = {1551-1565},
    10621   journal = {Pattern Recognition},
    10622   volume = {27},
    10623   author = {Saito,T. and Toriwaki, J.}
    10624 }
    10625 @article{Bonneau2005,
    10626   number = {9},
    10627   year = {2005},
    10628   title = {Single Quantum Dot Tracking Based on Perceptual Grouping Using Minimal Paths in a Spatiotemporal Volume},
    10629   pages = {1384-1395},
    10630   journal = {IEEE Transactions on Image Processing},
    10631   volume = {14},
    10632   author = {Bonneau, S. and Dahan, M. and Cohnen, L.D.}
    10633 }
    10634 @inproceedings{Boomgaard2002a,
    10635   month = {1 June},
    10636   year = {2002},
    10637   title = {Robust Estimation of Orientation for Texture Analysis},
    10638   booktitle = {Texture 2002, The 2nd international workshop on texture analysis and synthesis},
    10639   pages = {135-138},
    10640   address = {Copenhagen, Denmark},
    10641   author = {Boomgaard, R. van den and Weijer, J. van de}
    10642 }
    10643 @article{Koenderink1988a,
    10644   number = {7},
    10645   month = {July},
    10646   year = {1988},
    10647   title = {Two-dimensional Curvature Operators},
    10648   pages = {1136--1141},
    10649   journal = {Journal of the Optical Society of America A},
    10650   volume = {5},
    10651   author = {Koenderink, J.J. and Richards, W.}
    10652 }
    10653 @article{Neher2004,
    10654   year = {2004},
    10655   title = {Applying Spectral Fingerprinting to the Analysis of {FRET} Images},
    10656   pages = {185-195},
    10657   journal = {Microscopy Research and Technique},
    10658   volume = {64},
    10659   author = {Neher, R.A. and Neher, E.}
    10660 }
    10661 @article{Wouters2001,
    10662   year = {2001},
    10663   title = {Imaging biochemistry inside cells},
    10664   pages = {203-211},
    10665   journal = {Trends in Cell Biology},
    10666   volume = {11},
    10667   author = {Wouters, F.S. and Verveer, P.J. and Bastiaens, P.I.H.}
    10668 }
    10669 @article{Einstein1905,
    10670   year = {1905},
    10671   title = {{\"Uber} die von der molekularkinetischen {T}heorie der {W\"a}rme geforderte {B}ewegung von in ruhenden {Fl\"u}ssigkeiten suspendierten {T}eilchen},
    10672   pages = {549--560},
    10673   journal = {Annalen der Physik},
    10674   volume = {17},
    10675   author = {Einstein, A.}
    10676 }
    10677 @article{Wimberly2000,
    10678   year = {2005},
    10679   title = {Structure of the {30S} ribosomal subunit},
    10680   pages = {327-339},
    10681   journal = {Nature},
    10682   volume = {407},
    10683   author = {Wimberly, B.T. and Brodersen, D.E. and Clemons, W.M. Jr. and Morgan-Warren, R.J. and Carter, A.P. and Vonrhein, C. and Hartsch, T. and Ramakrishnan, V.}
    10684 }
    10685 @article{Weickert1998,
    10686   number = {3},
    10687   year = {1998},
    10688   title = {Efficient and reliable schemes for nonlinear diffusion filtering},
    10689   pages = {398--410},
    10690   journal = {IEEE Transactions on Image Processing},
    10691   volume = {7},
    10692   author = {Weickert, J. and ter Haar Romeny, B.M. and Viergever, M.A. }
    10693 }
    10694 @article{Lindeberg1990,
    10695   number = {3},
    10696   year = {1990},
    10697   title = {Scale-Space for Discrete Signals},
    10698   pages = {234--254},
    10699   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    10700   volume = {12},
    10701   author = {Lindeberg, T.}
    10702 }
    10703 @article{Nason2000,
    10704   year = {2000},
    10705   title = {Wavelet Processes and Adaptive Estimation of the Evolutionary Wavelet Spectrum},
    10706   pages = {271--292},
    10707   journal = {Journal of the Royal Statistical Society B},
    10708   volume = {62},
    10709   author = {Nason, G.P. and Sachs, R. von and Kroisandt, G.}
    10710 }
    10711 @article{Gibbons1975,
    10712   number = {11},
    10713   year = {1975},
    10714   title = {Inelastic electron scattering spectrometer},
    10715   pages = {1546-1554},
    10716   journal = {Review of Scientific Intstruments},
    10717   volume = {46},
    10718   author = {Gibbons, P.C. and Ritsko, J.J. and Schnatterly, S.E.}
    10719 }
    10720 @article{Bouma2005,
    10721   number = {9},
    10722   year = {2005},
    10723   title = {Correction for the Dislocation of Curved Surfaces Caused by the {PSF} in {2D} and {3D} {CT} Images},
    10724   pages = {1501-1507},
    10725   journal = {Ultramicroscopy},
    10726   volume = {27},
    10727   author = {Bouma, H. and Vilanova, A. and Vliet, L.J. van and Gerritsen, F.A.}
    10728 }
    10729 @book{Lindeberg1994,
    10730   year = {1994},
    10731   title = {Scale-Space Theory in Computer Vision},
    10732   publisher = {Kluwer},
    10733   author = {Lindeberg, T.}
    10734 }
    10735 @article{Ober2003,
    10736   number = {10},
    10737   year = {2003},
    10738   title = {Calculations of the Fisher information matrix for multidimensional data sets},
    10739   pages = {2679-2691},
    10740   journal = {IEEE Transactions on Signal Processing},
    10741   volume = {51},
    10742   author = {Ober, R.J. and Lin, Z. and Zou, Q.}
    10743 }
    10744 @article{Mattfeldt2000,
    10745   month = {May},
    10746   year = {2000},
    10747   title = {Classification of Spatial Textures in Benign and Cancerous Glandular Tissues by Stereology and Stochastic Geometry using Artificial Neural Networks},
    10748   pages = {143--158},
    10749   journal = {Journal of Microscopy},
    10750   volume = {198, Pt 2},
    10751   author = {Mattfeldt, T. and Gottfried, H.-W. and Schmidt, V. and Kestler, H.A.}
    10752 }
    10753 @article{Ober2004,
    10754   number = {2},
    10755   year = {2004},
    10756   title = {Localization Accuracy in Single-Molecule Microscopy},
    10757   pages = {1185-1200},
    10758   journal = {Biophysical Journal},
    10759   volume = {86},
    10760   author = {Ober, R.J. and Ram, S. and Ward, S.E.}
    10761 }
    10762 @article{Hummel1987,
    10763   year = {1987},
    10764   title = {Deblurring Gaussian Blur},
    10765   pages = {66--80},
    10766   journal = {Computer Vision, Graphics, and Image Processing},
    10767   volume = {38},
    10768   author = {Hummel, R.A. and Kimia, B. and Zucker, S.W.}
    10769 }
    10770 @article{Hummel1989,
    10771   number = {12},
    10772   month = {December},
    10773   year = {1989},
    10774   title = {Reconstructions from Zero Crossings in Scale Space},
    10775   pages = {2111--2130},
    10776   journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
    10777   volume = {37},
    10778   author = {Hummel, R. and Moniot, R.}
    10779 }
    10780 @article{Pons1999,
    10781   year = {1999},
    10782   title = {Particle morphology: from cisulatisation to measurement},
    10783   pages = {44--57},
    10784   journal = {Powder Technology},
    10785   volume = {103},
    10786   author = {Pons, M.N. and Vivier, H. and Belaroui, K. and Bernard-Michel, B. and Cordier, F. and Oulahana, D. and Dodds, J.A. }
    10787 }
    10788 @inproceedings{Holmes1999,
    10789   year = {1999},
    10790   title = {Developing a Measure of Similarity between Pixel Signatures},
    10791   booktitle = {10th British Machine Vision Conference},
    10792   pages = {614--623},
    10793   editor = {Pridmore, T. and Elliman, D.},
    10794   volume = {2},
    10795   author = {Holmes, A. and Taylor, C.}
    10796 }
    10797 @article{Keys1981,
    10798   number = {6},
    10799   year = {1981},
    10800   title = {Cubic Convolution Interpolation for Digital Image Processing},
    10801   pages = {1153-1160},
    10802   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    10803   volume = {29},
    10804   author = {Keys, R. G.}
    10805 }
    10806 @inproceedings{Hummel1986,
    10807   year = {1986},
    10808   title = {Representation Based on Zero-crossings in Scale-Space},
    10809   booktitle = {IEEE Proceedings of the International Conference on Computer Vision and Pattern Recognition},
    10810   pages = {204--209},
    10811   author = {Hummel, R.A.}
    10812 }
    10813 @article{Nielsen1997,
    10814   number = {4},
    10815   year = {1997},
    10816   title = {Regularization, scale-space and edge-detection filters},
    10817   pages = {291--307},
    10818   journal = {Journal of Mathematical Imaging and Vision},
    10819   volume = {7},
    10820   author = {Nielsen, N. and Florack, L. and Deriche, R.}
    10821 }
    10822 @inbook{Adam1968,
    10823   year = {1968},
    10824   title = {Structural Chemistry and Molecular Biology},
    10825   pages = {198-215},
    10826   editor = {Rich, A. and Davidson, N. },
    10827   address = {San Francisco, USA},
    10828   chapter = {Reduction of Dimensionality in Biological Diffusion Processes},
    10829   publisher = {Freeman},
    10830   author = {Adam, G. and {Delbr\"uck}, M.}
    10831 }
    10832 @article{Frontali1979,
    10833   number = {6},
    10834   year = {1979},
    10835   title = {An absolute method for the determination of the persistence length of native {DNA} from electron micrographs},
    10836   pages = {1353-1373},
    10837   journal = {Biopolymers},
    10838   volume = {18},
    10839   author = {Frontali, C. and Dore, E. and Ferrauto, A. and Gratton, E. and Bettini, A. and Pozzan, M.R. and Valdevit, E.}
    10840 }
    10841 @inbook{Thomas1963,
    10842   year = {1963},
    10843   title = {Applications of Digital Computers},
    10844   chapter = {Using Computers to Solve Problems in Physics},
    10845   publisher = {Ginn and Co., Boston},
    10846   author = {Thomas, L.H.}
    10847 }
    10848 @article{Yang2005,
    10849   year = {2005},
    10850   title = {Unified {3-D} structure and projection orientation refinement using {quasi-Newton} algorithm},
    10851   pages = {53-64},
    10852   journal = {Journal of Structural Biology},
    10853   volume = {149},
    10854   author = {Yang, C. and Ng, E.G. and Penczek, P.A.}
    10855 }
    10856 @article{Almeida1997,
    10857   year = {1997},
    10858   title = {Anisotropic Textures with Arbitrary Orientation},
    10859   pages = {241--251},
    10860   journal = {Journal of Mathematical Imaging and Vision},
    10861   volume = {7},
    10862   author = {Almeida, M.P.}
    10863 }
    10864 @mastersthesis{Okker2003,
    10865   month = {January},
    10866   year = {2003},
    10867   title = {Contour continuation using space variant mathematical morphology},
    10868   school = {Delft University of Technology},
    10869   author = {Okker, B.H.}
    10870 }
    10871 @article{Kempen2000a,
    10872   number = {4},
    10873   year = {2000},
    10874   title = {Mean and Variance of Ratio Estimators Used in Fluorescence Ratio Imaging},
    10875   pages = {300-305},
    10876   journal = {Cytometry},
    10877   volume = {39},
    10878   author = {Kempen, G.M.P. van and Vliet, L.J. van}
    10879 }
    10880 @article{Almeida1994,
    10881   number = {11},
    10882   month = {November},
    10883   year = {1994},
    10884   title = {The Fractional {F}ourier Transform and Time-Frequency Representations},
    10885   pages = {3084--3091},
    10886   journal = {IEEE Transactions on Signal Processing},
    10887   volume = {42},
    10888   author = {Almeida, L.B.}
    10889 }
    10890 @article{Malandain1998,
    10891   number = {5},
    10892   year = {1998},
    10893   title = {Euclidean Skeletons},
    10894   pages = {317--327},
    10895   journal = {Image and Vision Computing},
    10896   volume = {16},
    10897   author = {Malandain, G. and {Fern\'andez-Vidal}, S.}
    10898 }
    10899 @article{Hekrdla1986,
    10900   number = {4},
    10901   month = {August},
    10902   year = {1986},
    10903   title = {Index Transforms of Multidimensional Cyclic Convolutions and Discrete {Fourier} Transforms},
    10904   pages = {996--996},
    10905   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    10906   volume = {34},
    10907   annote = {key_fft},
    10908   author = {Hekrdla, J.}
    10909 }
    10910 @article{Kues2001,
    10911   number = {6},
    10912   year = {2001},
    10913   title = {Visualization and Tracking of Single Protein Molecules in the Cell Nucleus},
    10914   pages = {2954-2967},
    10915   journal = {Biophysical Journal},
    10916   volume = {80},
    10917   author = {Kues, T. and Peters, R. and Kubitscheck, U.}
    10918 }
    10919 @article{Heilemann2002,
    10920   number = {14},
    10921   year = {2002},
    10922   title = {High-resolution colocalization of single dye molecules by fluorescence lifetime imaging microscopy},
    10923   pages = {3511-3517},
    10924   journal = {Analytical Chemistry},
    10925   volume = {74},
    10926   author = {Heilemann, M. and Herten, D.P. and Heintzmann, R. and Cremer, C. and {M\"uller}, C. and Tinnefeld, P. and Weston, K.D. and Wolfrum, J. and Sauer, M.}
    10927 }
    10928 @article{Kehtarnavaz1988,
    10929   number = {5},
    10930   month = {September},
    10931   year = {1988},
    10932   title = {A 3-D contour segmentation scheme based on curvature and torsion},
    10933   pages = {707--713},
    10934   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    10935   volume = {10},
    10936   author = {Kehtarnavaz, N. and Figueiredo, R.J.P. de}
    10937 }
    10938 @article{Gil1993,
    10939   number = {5},
    10940   month = {May},
    10941   year = {1993},
    10942   title = {Computing {2-D} Min, Median, and Max Filters},
    10943   pages = {504--507},
    10944   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    10945   volume = {15},
    10946   author = {Gil, J. and Werman, M.}
    10947 }
    10948 @article{Engel1981,
    10949   number = {1},
    10950   year = {1981},
    10951   title = {Shapes, domain organizations and flexibility of laminin and fibronectin, two multifunctional proteins of the extracellular matrix},
    10952   pages = {97-120},
    10953   journal = {Journal of Molecular Biology},
    10954   volume = {150},
    10955   author = {Engel, J. and Odermatt, E. and Engel, A. and Madri, J.A. and Furthmayr, H. and Timpl, H.R.}
    10956 }
    10957 @article{Ruiz2001,
    10958   year = {2001},
    10959   title = {The first three-dimensional structure of phosphofructokinase from Saccharomyces cerevisiae determined by electron microscopy of single particles},
    10960   pages = {167-180},
    10961   journal = {Journal of Structural Biology},
    10962   volume = {136},
    10963   author = {Ruiz, T. and {Koppenschl\"ager}, G. and Radermacher, M.}
    10964 }
    10965 @techreport{Nordberg1992a,
    10966   year = {1992},
    10967   title = {Signal Representation and Signal Processing using Operators},
    10968   note = {LiTH-ISY-I-1387},
    10969   address = {{Link\"oping}, Sweden},
    10970   institution = {{Link\"oping} University},
    10971   author = {Nordberg, K.}
    10972 }
    10973 @article{Faydi2001,
    10974   year = {2001},
    10975   title = {Experimental Study and Modeling of the Ice Crystal Morphology of Model Standard Ice Cream. Part {I}: Direct Characterization Method and Experimental Data},
    10976   pages = {283--291},
    10977   journal = {Journal of Food Engineering},
    10978   volume = {48},
    10979   author = {Faydi, E. and Andrieu, J. and Laurent, P.}
    10980 }
    10981 @article{Griffin1997,
    10982   number = {5},
    10983   year = {1997},
    10984   title = {Scale-Imprecision Space},
    10985   pages = {369--398},
    10986   journal = {Image and Vision Computing},
    10987   volume = {15},
    10988   author = {Griffin, L.D.}
    10989 }
    10990 @phdthesis{Cavallo2002,
    10991   month = {June},
    10992   year = {2002},
    10993   title = {Four Dimensional Particle Tracking in Biological Dynamic Processes},
    10994   address = {Heidelberg, Germany},
    10995   school = {Ruprechts-Karls-{Universit\"at}},
    10996   author = {Cavallo, A.}
    10997 }
    10998 @phdthesis{Leeuw1997,
    10999   year = {1997},
    11000   title = {Presentation and Exploration of Flow Data},
    11001   address = {The Netherlands},
    11002   school = {Delft University of Technology},
    11003   author = {Leeuw, W. de}
    11004 }
    11005 @article{Unser1993a,
    11006   number = {2},
    11007   month = {February},
    11008   year = {1993},
    11009   title = {{B}-Spline Signal Processing: Part {II} - Efficient Design and Applications},
    11010   pages = {834--848},
    11011   journal = {IEEE Transactions on Signal Processing},
    11012   volume = {41},
    11013   author = {Unser, Michael and Aldroubi, Akram and Eden, Murray}
    11014 }
    11015 @article{Deschamps2001,
    11016   number = {4},
    11017   year = {2001},
    11018   title = {Fast extraction of minimal paths in 3D images and applications to virtual endoscopy},
    11019   pages = {281-299},
    11020   journal = {Medical Image Analysis},
    11021   volume = {5},
    11022   author = {Deschamps, T. and Cohen, L.D.}
    11023 }
    11024 @article{Torok1998,
    11025   number = {4-6},
    11026   year = {1998},
    11027   title = {On the general properties of polarised light conventional and confocal microscopes},
    11028   pages = {300-315},
    11029   journal = {Optics Communications},
    11030   volume = {148},
    11031   author = {{T\"or\"ok}, P. and Higdon, P.D. and Wilson, T.}
    11032 }
    11033 @article{Rose2004,
    11034   year = {2004},
    11035   title = {Outline of an ultracorrector compensating for all primary chromatic and geometrical aberrations of charged-particle lenses},
    11036   pages = {12-27},
    11037   journal = {Nuclear Instruments and Methods in Physics Research A},
    11038   volume = {519},
    11039   author = {Rose, H.}
    11040 }
    11041 @article{Jain1979,
    11042   number = {4},
    11043   month = {October},
    11044   year = {1979},
    11045   title = {A Sinusoidal Family of Unitary Transforms},
    11046   pages = {356--365},
    11047   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11048   volume = {1},
    11049   annote = {key_fft},
    11050   author = {Jain, A.K.}
    11051 }
    11052 @article{Weickert1999a,
    11053   number = {3},
    11054   year = {1999},
    11055   title = {Linear scale-space has first been proposed in {Japan}},
    11056   pages = {237--252},
    11057   journal = {Journal of Mathematical Imaging and Vision},
    11058   volume = {10},
    11059   author = {Weickert, J. and Ishikawa, S. and Imiya, A.}
    11060 }
    11061 @article{Doel1998,
    11062   number = {3},
    11063   year = {1998},
    11064   title = {Quantitative evaluation of light microscopes based on image processing techniques},
    11065   pages = {138-149},
    11066   journal = {Bioimaging},
    11067   volume = {6},
    11068   author = {Doel, L.R. van den and Vliet, L.J. van}
    11069 }
    11070 @article{Mallat1992,
    11071   number = {7},
    11072   month = {June},
    11073   year = {1992},
    11074   title = {Characterization of Signals from Multiscale Edges},
    11075   pages = {710--732},
    11076   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11077   volume = {14},
    11078   author = {Mallat, S.G. and Zhong, S.}
    11079 }
    11080 @inproceedings{Bulow1997,
    11081   month = {June 9-11},
    11082   year = {1997},
    11083   title = {Algebraically Extended Representations of Multi-Dimensional Signals},
    11084   booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)},
    11085   pages = {559--566},
    11086   volume = {I},
    11087   author = {{B\"ulow}, T. and Sommer, G.}
    11088 }
    11089 @article{Bailey1990,
    11090   year = {1990},
    11091   title = {{FFT}s in External or Hierarchical Memory},
    11092   pages = {23--35},
    11093   journal = {The Journal of Supercomputing},
    11094   volume = {4},
    11095   annote = {key_fft},
    11096   author = {Bailey, D.H.}
    11097 }
    11098 @article{Boddeke1997,
    11099   number = {3},
    11100   year = {1997},
    11101   title = {Calibration of the automated z-axis of a microscope using focus functions},
    11102   pages = {270-274},
    11103   journal = {Journal of Microscopy},
    11104   volume = {186},
    11105   author = {Boddeke, F.R. and Vliet, L.J. van and Young, I.T.}
    11106 }
    11107 @inproceedings{Bulow1998,
    11108   month = {August 17--20},
    11109   title = {Quaternionic {G}abor Filters for Local Structure Classification},
    11110   booktitle = {14th International Conference on Pattern Recognition (Brisbane, Australia)},
    11111   pages = {808--810},
    11112   author = {{B\"ulow}, T. and Sommer, G.}
    11113 }
    11114 @article{Boddeke1994,
    11115   number = {4},
    11116   year = {1994},
    11117   title = {Autofocusing in microscopy based on the {OTF} and sampling},
    11118   pages = {193-203},
    11119   journal = {Bioimaging},
    11120   volume = {2},
    11121   author = {Boddeke, F.R. and Vliet, L.J. van and Netten, H. and Young, I.T.}
    11122 }
    11123 @inproceedings{Breton1996,
    11124   year = {1996},
    11125   title = {Shadows and Shading Flow Fields},
    11126   booktitle = {Proc. IEEE Conference on Computer Vision and Pattern Recognition - CVPR'96},
    11127   pages = {782--789},
    11128   address = {San Francisco, USA},
    11129   author = {Breton, P. and Zucker, S.W.}
    11130 }
    11131 @article{Nikolaidis1998,
    11132   number = {12},
    11133   month = {December},
    11134   year = {1998},
    11135   title = {Nonlinear Processing and Analysis of Angular Signals},
    11136   pages = {3181--3194},
    11137   journal = {IEEE Transactions on Signal Processing},
    11138   volume = {46},
    11139   author = {Nikolaidis, N. and Pitas, I.}
    11140 }
    11141 @article{Monga1992,
    11142   number = {6},
    11143   year = {1992},
    11144   title = {From voxel to intrinsic surface features},
    11145   pages = {403--417},
    11146   journal = {Image and Vision Computing},
    11147   volume = {10},
    11148   author = {Monga, O. and Ayache,N. and Sander,P.T.}
    11149 }
    11150 @article{Monga1995,
    11151   number = {2},
    11152   year = {1995},
    11153   title = {Using Partial Derivatives of 3D Images to Extract Typical Surface Features},
    11154   pages = {171--189},
    11155   journal = {Computer Vision and Image Understanding},
    11156   volume = {61},
    11157   author = {Monga, O. and Benayoun, S.}
    11158 }
    11159 @article{Efros1997,
    11160   number = {6},
    11161   year = {1997},
    11162   title = {Random Telegraph Signal in the Photoluminescence Intensity of a Single Quantum Dot},
    11163   pages = {1110-1113},
    11164   journal = {Physical Review Letters},
    11165   volume = {78},
    11166   author = {Efros, A.L. and Rosen, M.}
    11167 }
    11168 @article{Illingworth1988,
    11169   number = {1},
    11170   year = {1988},
    11171   title = {A Survey of the {H}ough Transform},
    11172   pages = {87--116},
    11173   journal = {Computer Vision, Graphics and Image Processing},
    11174   volume = {44},
    11175   annote = {key_radon},
    11176   author = {Illingworth, J. and Kittler, J.}
    11177 }
    11178 @inproceedings{Dorst1993,
    11179   year = {1993},
    11180   title = {An Analytical Theory of Mathematical Morphology},
    11181   booktitle = {Mathematical Morphology and its Applications to Signal Processing},
    11182   pages = {245--250},
    11183   editor = {Serra, J. and Salembier, P.},
    11184   author = {Dorst, L. and Boomgaard, R. van den},
    11185   organization = {Universitat Politecnica de Catalunya (Barcelona, Spain)}
    11186 }
    11187 @article{Zwier2004,
    11188   number = {1},
    11189   year = {2004},
    11190   title = {Image calibration in fluorescence microscopy},
    11191   pages = {15-24},
    11192   journal = {Journal of Microscopy},
    11193   volume = {216},
    11194   author = {Zwier, J.M. and Rooij, G.J. van and Hofstraat, J.W. and Brakenhoff, G.J.}
    11195 }
    11196 @article{Heun2001,
    11197   number = {5549},
    11198   month = {December},
    11199   year = {2001},
    11200   title = {Chromoson Dynamics in the Yeast Interphase Nucleus},
    11201   pages = {2181-2187},
    11202   journal = {Science},
    11203   volume = {294},
    11204   author = {Heun, P. and Laroche, T. and Shimada, K. and Furrer, P. and Gasser, S.M.}
    11205 }
    11206 @inbook{Dorst1995,
    11207   year = {1995},
    11208   title = {World Scientific},
    11209   pages = {13--22},
    11210   editor = {Dori, D. and Bruckstein, A.},
    11211   chapter = {Orientation-based Representations for Mathematical Morphology},
    11212   author = {Dorst, L. and Boomgaard, R. van den}
    11213 }
    11214 @misc{Dorst1999,
    11215   month = {December},
    11216   year = {1999},
    11217   title = {{GABLE}: A Matlab Tutorial for Geometric Algebra},
    11218   author = {Dorst, L. and Mann, S. and Bouma, T.}
    11219 }
    11220 @article{Dorst1994,
    11221   year = {1994},
    11222   title = {Morphological Signal Processing and the Slope Transform},
    11223   pages = {79--98},
    11224   journal = {Signal Processing},
    11225   volume = {38},
    11226   author = {Dorst, L. and Boomgaard, R. van den}
    11227 }
    11228 @article{Lichte1996a,
    11229   year = {1996},
    11230   title = {Artefacts in electron holography},
    11231   pages = {67-77},
    11232   journal = {Ultramicroscopy},
    11233   volume = {64},
    11234   author = {Lichte, H. and Geiger, D. and Harscher, A. and Heindl, E. and Lehman, M. and Malamidis, D. and Orchowski, A. and Rau, W.-D.}
    11235 }
    11236 @article{Thust1996,
    11237   year = {1996},
    11238   title = {Numerical correction of lens aberrations in phase-retrieval {HRTEM}},
    11239   pages = {249-264},
    11240   journal = {Ultramicroscopy},
    11241   volume = {64},
    11242   author = {Thust, A. and Overwijk, M.H.F. and Coene, W.M.J. and Lentzen, M.}
    11243 }
    11244 @article{Katsevich1997,
    11245   number = {4},
    11246   month = {August},
    11247   year = {1997},
    11248   title = {Local Tomography for the Generalized Radon Transform},
    11249   pages = {1128--1162},
    11250   journal = {SIAM J. Appl. Math.},
    11251   volume = {57},
    11252   annote = {key_radon},
    11253   author = {Katsevich, A.I.}
    11254 }
    11255 @article{Lopez1999,
    11256   number = {4},
    11257   month = {April},
    11258   year = {1999},
    11259   title = {Evaluation of Methods for Ridge and Valley Detection},
    11260   pages = {327--335},
    11261   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11262   volume = {21},
    11263   author = {{L\'opez}, A.M. and Lumbreras, F. and Serrat, J. and Villanueva, J.J.}
    11264 }
    11265 @article{Beil1994,
    11266   year = {1994},
    11267   title = {Steerable Filters and Invariance Theory},
    11268   pages = {453--460},
    11269   journal = {Pattern Recognition Letters},
    11270   volume = {15},
    11271   author = {Beil, W.}
    11272 }
    11273 @book{Stauffer1985,
    11274   edition = {second},
    11275   year = {1985, 1994},
    11276   title = {Introduction to Percolation Theory},
    11277   publisher = {Taylor \& Francis},
    11278   author = {Stauffer, D. and Aharony, A.}
    11279 }
    11280 @inproceedings{Simoncelli1996a,
    11281   year = {1996},
    11282   title = {Noise Removal via Bayesian Wavelet Coring},
    11283   booktitle = {3rd IEEE International Conference on Image Processing (Lausanne, Switzerland)},
    11284   pages = {379--382},
    11285   author = {Simoncelli, E.P. and Adelson, E.H.}
    11286 }
    11287 @article{Shafarenko1997,
    11288   number = {11},
    11289   month = {November},
    11290   year = {1997},
    11291   title = {Automatic Watershed Segmentation of Randomly Textured Color Images},
    11292   pages = {1530--1544},
    11293   journal = {IEEE Transactions on Image Processing},
    11294   volume = {6},
    11295   author = {Shafarenko, Leila and Petrou, Maria and Kittler, Josef}
    11296 }
    11297 @article{Duhamel1988,
    11298   number = {2},
    11299   month = {February},
    11300   year = {1988},
    11301   title = {On Computing the Inverse DFT},
    11302   pages = {285--286},
    11303   journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
    11304   volume = {36},
    11305   annote = {key_fft},
    11306   author = {Duhamel, P. and Piron, B. and Etcheto, J.M.}
    11307 }
    11308 @article{Moser2006,
    11309   year = {2006},
    11310   title = {Filter cubes with built-in ultrabright light-emitting diodes as exchangeable excitation light sources in fluorescence microscopy},
    11311   pages = {135-140},
    11312   journal = {Journal of Microscopy},
    11313   volume = {222},
    11314   author = {Moser, C. and Mayr, T. and Klimant, I.}
    11315 }
    11316 @article{Morrone1988,
    11317   year = {1988},
    11318   title = {Feature Detection in Human Vision: a Phase-Dependent Energy Model},
    11319   pages = {221--245},
    11320   journal = {Proc. Roc. Soc. Lond. B},
    11321   volume = {235},
    11322   author = {Morrone, M.C. and Burr, D.C.}
    11323 }
    11324 @article{Giordano2002,
    11325   year = {2002},
    11326   title = {Diheteroarylethenes as Thermally Stable Photoswitchable Acceptors in Photochromic Fluorescence Resonance Energy Transfer ({pcFRET})},
    11327   pages = {7481-7489},
    11328   journal = {Journal of the American Chemical Society},
    11329   volume = {124},
    11330   author = {Giordano, L. and Jovin, T.M. and Irie, M. and Jare-Erijman, E.A.}
    11331 }
    11332 @article{Iddir2005,
    11333   year = {2005},
    11334   title = {Atomic scale characterization of the Pt/TiO$_2$ interface},
    11335   pages = {233-241},
    11336   journal = {Micron},
    11337   volume = {36},
    11338   author = {Iddir, H. and Disko, M.M. and Ogut, S. and Browning, N.D.}
    11339 }
    11340 @article{Bleau1992a,
    11341   number = {2},
    11342   month = {September},
    11343   year = {1992},
    11344   title = {A New Set of Fast Algorithms for Mathematical Morphology, {II}. Identification of Topographic Features on Grayscale Images},
    11345   pages = {210--229},
    11346   journal = {CVGIP: Image Understanding},
    11347   volume = {56},
    11348   author = {Bleau, A. and Guise, J. de and LeBlanc, A.-R.}
    11349 }
    11350 @article{Starink1996,
    11351   year = {1996},
    11352   title = {Background correction in scanning probe microscope recordings of macromolecules},
    11353   pages = {291-305},
    11354   journal = {Surface Science},
    11355   volume = {359},
    11356   author = {Starink, J.P.P. and Jovin, T.M.}
    11357 }
    11358 @inproceedings{Barth2000,
    11359   year = {2000},
    11360   title = {The minors of the structure tensor},
    11361   booktitle = {Mustererkennung 2000},
    11362   pages = {221--228},
    11363   editor = {Sommer, G. and Krger, N. and Perwass, C.},
    11364   address = {Berlin},
    11365   publisher = {Springer},
    11366   author = {Barth, E.}
    11367 }
    11368 @article{Sander2003,
    11369   year = {2003},
    11370   title = {Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra},
    11371   pages = {392-401},
    11372   journal = {Journal of Structural Biology},
    11373   volume = {142},
    11374   author = {Sander, B. and Golas, M.M. and Stark, H.}
    11375 }
    11376 @misc{Waagepetersen1997,
    11377   year = {1997},
    11378   title = {Contributions to the Statistical Modeling of Image Data and Spatial Point Processes},
    11379   note = {University of Aarhus},
    11380   howpublished = {www},
    11381   author = {Waagepetersen, R.}
    11382 }
    11383 @article{Hentschell1983,
    11384   number = {3},
    11385   year = {1983},
    11386   title = {The Infinite Number of Generalized Dimensions of Fractals and Strange Attractors},
    11387   pages = {435--444},
    11388   journal = {Physica D},
    11389   volume = {8},
    11390   author = {Hentschell, H.G.E. and Procaccia, I.}
    11391 }
    11392 @inproceedings{Croisier1976,
    11393   month = {August},
    11394   year = {1976},
    11395   title = {Perfect Channel Splitting by Use of Interpolation/Decimation/Tree Decomposition Techniques},
    11396   booktitle = {International Conference on Information Sciences and Systems},
    11397   pages = {443--446},
    11398   address = {Patras, Greece},
    11399   author = {Croisier, A. and Esteban, D. and Galand, C.}
    11400 }
    11401 @article{Barnard1980,
    11402   number = {4},
    11403   month = {July},
    11404   year = {1980},
    11405   title = {Disparity Analysis of Images},
    11406   pages = {527--534},
    11407   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11408   volume = {2},
    11409   author = {Barnard, S.T. and Thompson, W.B.}
    11410 }
    11411 @article{Desolneux2001,
    11412   year = {2001},
    11413   title = {Edge Detection by {Helmholtz} Principle},
    11414   pages = {271--284},
    11415   journal = {Journal of Mathematical Imaging and Vision},
    11416   volume = {14},
    11417   author = {Desolneux, A. and Moisan, L. and Morel, J.-M.}
    11418 }
    11419 @phdthesis{Picka1996,
    11420   month = {December},
    11421   year = {1996},
    11422   title = {Variance-Reducing Modifications for Estimators of Dependence in Random Sets},
    11423   address = {Chicago, USA},
    11424   school = {University of Chicago},
    11425   author = {Picka, J.D.}
    11426 }
    11427 @inproceedings{Dijk2003,
    11428   series = {Lecture Notes in Computer Science},
    11429   month = {Aug 25-27},
    11430   year = {2003},
    11431   title = {A new sharpness measure based on Gaussian lines and edges},
    11432   booktitle = {CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands)},
    11433   pages = {149-156},
    11434   editor = {Petkov, N. and Westenberg, M.A.},
    11435   volume = {2756},
    11436   address = {Berlin},
    11437   publisher = {Springer},
    11438   author = {Dijk, J. and Ginkel, M. van and Asselt, R.J. van and Vliet, L.J. van and Verbeek, P.W.}
    11439 }
    11440 @inproceedings{Dijk2002,
    11441   month = {June 19-21},
    11442   year = {2002},
    11443   title = {A new sharpness measure based on Gaussian lines and edges},
    11444   booktitle = {Proc. ASCI 2002, 8th Annual Conf. of the Advanced School for Computing and Imaging},
    11445   pages = {39--44},
    11446   editor = {Deprettere, E.F. and Belloum, A. and Heijnsdijk, J.W.J. and Stappen, F. van der},
    11447   address = {Delft},
    11448   publisher = {ASCI},
    11449   author = {Dijk, J. and Ginkel, M. van and Asselt, R.J. van and Vliet, L.J. van and Verbeek, P.W.}
    11450 }
    11451 @article{Bruijne2003,
    11452   year = {2003},
    11453   title = {Localization and segmentation of aortic endografts using marker detection},
    11454   pages = {473-482},
    11455   journal = {IEEE Transactions on Medical Imaging},
    11456   volume = {22},
    11457   author = {Bruijne, M. de and Niessen, W.J. and Maintz, J.B.A. and Viergever, M.A.}
    11458 }
    11459 @article{Rader1968,
    11460   number = {6},
    11461   month = {June},
    11462   year = {1968},
    11463   title = {Discrete {Fourier} Transforms When the Number of Data Samples is Prime},
    11464   pages = {1107--1108},
    11465   journal = {Proceedings of the IEEE},
    11466   volume = {56},
    11467   annote = {key_fft},
    11468   author = {Rader, C.M.}
    11469 }
    11470 @phdthesis{Robbins1996,
    11471   month = {August},
    11472   year = {1996},
    11473   title = {The Detection of {2D} Image Features using Local Energy},
    11474   address = {Australia},
    11475   school = {University of Western Australia},
    11476   author = {Robbins, B.J.}
    11477 }
    11478 @article{Ando2004,
    11479   year = {2004},
    11480   title = {Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting},
    11481   pages = {1370-1373},
    11482   journal = {Science},
    11483   volume = {306},
    11484   author = {Ando, R. and Muzuno, H. and Miyawaki, A.}
    11485 }
    11486 @article{Robbins1997,
    11487   number = {5},
    11488   year = {1997},
    11489   title = {{2D} Feature Detection via Local Energy},
    11490   pages = {353--368},
    11491   journal = {Image and Vision Computing},
    11492   volume = {15},
    11493   author = {Robbins, B. and Owens, R.}
    11494 }
    11495 @article{Stokke1990,
    11496   number = {13},
    11497   year = {1990},
    11498   title = {The reliability of wormlike polysaccharides chain dimensions estimated from electron micrographs},
    11499   pages = {1161-1181},
    11500   journal = {Biopolymers},
    11501   volume = {30},
    11502   author = {Stokke, B.T. and Brant, D.A.}
    11503 }
    11504 @article{Ando2000,
    11505   number = {3},
    11506   month = {March},
    11507   year = {2000},
    11508   title = {Consistent Gradient Operators},
    11509   pages = {252--265},
    11510   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11511   volume = {22},
    11512   author = {Ando, S.}
    11513 }
    11514 @techreport{Cullip1990,
    11515   year = {1990},
    11516   title = {Algorithms for 2D and 3D Image Description Based on the IAS},
    11517   note = {TR90-034},
    11518   institution = {University of North Carolina, U.S.A.},
    11519   author = {Cullip, T.J. and Fredericksen, R.E. and Gauch, J.M. and Pizer, S.M.}
    11520 }
    11521 @article{Dempster1977,
    11522   year = {1977},
    11523   title = {Maximum Likelihood from Incomplete Data via the {EM} algorithm},
    11524   pages = {1--37},
    11525   journal = {Journal of the Royal Statistical Society B},
    11526   volume = {39},
    11527   author = {Demster, A.P. and Laird, N.M. and Rubin, D.B.}
    11528 }
    11529 @article{Marshall1997,
    11530   number = {12},
    11531   year = {1998},
    11532   title = {Interphase chromosomes undergo constrained diffusional motion in living cells},
    11533   pages = {930-939},
    11534   journal = {Current Biology},
    11535   volume = {7},
    11536   author = {Marshall, W.F. and Straight, A. and Marko, J.F. and Swedlow, J. and Dernburg, A. and Murray, A.W. and Agard, D.A. and Sedat, J.W.}
    11537 }
    11538 @inproceedings{Borga1997,
    11539   month = {June 9-11},
    11540   year = {1997},
    11541   title = {Learning Canonical Correlations},
    11542   booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)},
    11543   pages = {1--8},
    11544   volume = {I},
    11545   author = {Borga, M. and Knutsson, H. and Landelius, T.}
    11546 }
    11547 @article{Perona1998,
    11548   number = {3},
    11549   month = {March},
    11550   year = {1998},
    11551   title = {Orientation Diffusions},
    11552   pages = {457--467},
    11553   journal = {IEEE Transactions on Image Processing},
    11554   volume = {7},
    11555   author = {Perona, P.}
    11556 }
    11557 @phdthesis{Borga1998,
    11558   year = {1998},
    11559   title = {Learning Multidimensional Signal Processing},
    11560   address = {{Link\"oping, Sweden}},
    11561   school = {{Link\"oping University}},
    11562   author = {Borga, M.}
    11563 }
    11564 @article{Perona1990,
    11565   number = {7},
    11566   month = {July},
    11567   year = {1990},
    11568   title = {Scale-Space and Edge Detection Using Anisotropic Diffusion},
    11569   pages = {629--639},
    11570   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11571   volume = {12},
    11572   author = {Perona, P. and Malik, J.}
    11573 }
    11574 @inproceedings{Wink2001,
    11575   year = {2001},
    11576   title = {Vessel Axis Determination Using Wave Front Propagation Analysis},
    11577   booktitle = {MICCAI'01},
    11578   pages = {845-853},
    11579   editor = {Niessen, W. and Viergever, M.A.},
    11580   author = {Wink, O. and Niessen, W.J. and Verdonck, B. and Viergever, M.A.}
    11581 }
    11582 @article{Perona1995,
    11583   number = {5},
    11584   month = {May},
    11585   year = {1995},
    11586   title = {Deformable Models for Early Vision},
    11587   pages = {488--499},
    11588   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11589   volume = {17},
    11590   author = {Perona, P.}
    11591 }
    11592 @book{Gauss1801,
    11593   year = {1801},
    11594   title = {Disquisitiones Arithmeticae},
    11595   address = {{G\"ottingen} },
    11596   publisher = {{K\"oniglichen Gesellschaft der Wissenschaft}},
    11597   author = {Gauss, C.F.}
    11598 }
    11599 @article{Dirks2003,
    11600   number = {1},
    11601   year = {2003},
    11602   title = {Visualizing {RNA} molecules inside the nucleus of living cells},
    11603   pages = {51-57},
    11604   journal = {Methods},
    11605   volume = {29},
    11606   author = {Dirks, R.W. and Molenaar, C. and Tanke, H.J.}
    11607 }
    11608 @article{Dirks2001,
    11609   number = {1},
    11610   year = {2001},
    11611   title = {Methods for visualizing RNA processing and transport pathways in living cells},
    11612   pages = {3-11},
    11613   journal = {Histochemistry and Cell Biology},
    11614   volume = {115},
    11615   author = {Dirks, R.W. and Molenaar, R.W. and Tanke, H.J.}
    11616 }
    11617 @article{Bangham1994,
    11618   number = {3},
    11619   year = {1994},
    11620   title = {Multiscale Median and Morphological Filters for 2D Pattern Recognition},
    11621   pages = {387--415},
    11622   journal = {Signal Processing},
    11623   volume = {38},
    11624   author = {Bangham, J.A. and Campbell, T.G. and Aldridge, R.V.}
    11625 }
    11626 @book{HandbookCP1992,
    11627   edition = {82th},
    11628   year = {1992},
    11629   title = {Handbook of Chemistry and Physics },
    11630   editor = {Lide, D.R. },
    11631   publisher = {CRC Press }
    11632 }
    11633 @article{Bangham1996,
    11634   number = {5},
    11635   month = {May},
    11636   year = {1996},
    11637   title = {Multiscale Nonlinear Decomposition: The Sieve Decomposition Theorem},
    11638   pages = {529--539},
    11639   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11640   volume = {18},
    11641   author = {Bangham, J.A. and Chardaire, P. and Pye, C.J. and Ling, P.D.}
    11642 }
    11643 @article{Clerc2002,
    11644   number = {4},
    11645   month = {April},
    11646   year = {2002},
    11647   title = {The Texture Gradient Equation for Recovering Shape from Texture},
    11648   pages = {536--549},
    11649   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11650   volume = {24},
    11651   author = {Clerc, M. and Mallat, S.}
    11652 }
    11653 @article{Dijkstra1959,
    11654   year = {1959},
    11655   title = {A note on two problems in connexion with graphs.},
    11656   pages = {269--271},
    11657   journal = {Numerische Mathematik },
    11658   volume = {1},
    11659   author = {Dijkstra, E.W.}
    11660 }
    11661 @article{Andrey1998,
    11662   number = {3},
    11663   month = {March},
    11664   year = {1998},
    11665   title = {Unsupervised Segmentation of {M}arkov Random Field Modeled Textured Images Using Selectionist Relaxation},
    11666   pages = {252--262},
    11667   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11668   volume = {20},
    11669   author = {Andrey, P. and Tarroux, P.}
    11670 }
    11671 @article{Hestenes1994,
    11672   number = {1},
    11673   year = {1994},
    11674   title = {Invariant Body Kinematics: {I}. Saccadic and Compensatory Eye Movements},
    11675   pages = {65--77},
    11676   journal = {Neural Networks},
    11677   volume = {7},
    11678   author = {Hestenes, D.}
    11679 }
    11680 @article{Osher1988,
    11681   year = {1988},
    11682   title = {Fronts Propagating with Curvature-Dependent Speed: Algorithms Based on {H}amilton-{J}acobi Formulations},
    11683   pages = {12--49},
    11684   journal = {Journal of Computational Physics},
    11685   volume = {79},
    11686   author = {Osher, S. and Sethian, J.A.}
    11687 }
    11688 @article{Ram2006,
    11689   number = {12},
    11690   year = {2006},
    11691   title = {Beyond {Rayleighs} criterion: {A} resolution measure with application to single-molecule microscopy},
    11692   pages = {4457-4462},
    11693   journal = {Proceedings of the National Academy of Sciences USA},
    11694   volume = {103},
    11695   author = {Ram, S. and Ward, E.S. and Ober, R.J.}
    11696 }
    11697 @article{Schwertner2004a,
    11698   number = {1},
    11699   year = {2004},
    11700   title = {Measurement of specimen induced aberrations of biological samples using phase stepping interferometry},
    11701   pages = {11-19},
    11702   journal = {Journal of Microscopy},
    11703   volume = {213},
    11704   author = {Schwertner, M. and Booth, M.J. and Neil, M.A.A. and Wilson, T.}
    11705 }
    11706 @article{Schwertner2004b,
    11707   number = {3},
    11708   year = {2004},
    11709   title = {Simulation of specimen-induced aberrations for objects with spherical and cylindrical symmetry},
    11710   pages = {271-280},
    11711   journal = {Journal of Microscopy},
    11712   volume = {215},
    11713   author = {Schwertner, M. and Booth, M.J. and Wilson, T.}
    11714 }
    11715 @article{Simoncelli1992,
    11716   number = {2},
    11717   month = {March},
    11718   year = {1992},
    11719   title = {Shiftable Multi-scale Transforms},
    11720   pages = {587--607},
    11721   journal = {IEEE Transactions on Information Theory},
    11722   volume = {38},
    11723   author = {Simoncelli, E.P. and Freeman, W.T. and Adelson, E.H. and Heeger, D.J.}
    11724 }
    11725 @article{Simoncelli1996,
    11726   number = {9},
    11727   year = {1996},
    11728   title = {Steerable wedge filters for local orientation analysis},
    11729   pages = {1377--1382},
    11730   journal = {IEEE Transactions on Image Processing},
    11731   volume = {5},
    11732   author = {Simoncelli, E.P. and Farid, H.}
    11733 }
    11734 @article{Viero1995,
    11735   number = {4},
    11736   month = {December},
    11737   year = {1995},
    11738   title = {Morphological Extraction of Line Networks from Noisy Low-Contrast Images},
    11739   pages = {335--347},
    11740   journal = {Journal of Visual Communication and Image Representation},
    11741   volume = {6},
    11742   author = {Viero, T. and Jeulin, D.}
    11743 }
    11744 @article{Simoncelli1990,
    11745   number = {4},
    11746   month = {April},
    11747   year = {1990},
    11748   title = {Non-Separable Extensions of Quadrature Mirror Filters to Multiple Dimensions},
    11749   pages = {652--664},
    11750   journal = {Proceedings of the IEEE},
    11751   volume = {78},
    11752   author = {Simoncelli, E.P. and Adelson, E.H.}
    11753 }
    11754 @inproceedings{Luengo2001b,
    11755   series = {Lecture Notes on Computer Science},
    11756   year = {2001},
    11757   title = {A Rotation-Invariant Morphology for Shape Analysis of Anisotropic Objects and Structures},
    11758   booktitle = {Proc. 4th International Workshop on Visual Form},
    11759   pages = {378--387},
    11760   editor = {Arcelli, C. and Cordella, L.P. and Sanniti, G. di Baja},
    11761   volume = {2059},
    11762   address = {Capri, Italy},
    11763   publisher = {Springer-Verlag},
    11764   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    11765 }
    11766 @inproceedings{Luengo2001a,
    11767   year = {2001},
    11768   title = {Segmentation-Free Estimation of Length Distributions Using Sieves and RIA Morphology},
    11769   booktitle = {Proc. 7th Annual Conference of the Advanced School for Computing and Imaging},
    11770   pages = {129--136},
    11771   address = {Heijen, the Netherlands},
    11772   publisher = {ASCI, Delft},
    11773   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    11774 }
    11775 @article{Khotanzad1990,
    11776   number = {5},
    11777   month = {May},
    11778   year = {1990},
    11779   title = {Invariant Image Recognition by {Z}ernike Moments},
    11780   pages = {489--497},
    11781   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11782   volume = {12},
    11783   author = {Khotanzad, A. and Hong, Y.H.}
    11784 }
    11785 @article{Lindenbaum1993,
    11786   number = {1},
    11787   year = {1993},
    11788   title = {On {G}abor's contribution to image enhancement},
    11789   pages = {1--8},
    11790   journal = {Pattern Recognition},
    11791   volume = {27},
    11792   author = {Lindenbaum, M. and Fischer, M. and Bruckstein, A.}
    11793 }
    11794 @article{Rose2002,
    11795   year = {2002},
    11796   title = {Theory of electron-optical achromats and apochromats},
    11797   pages = {293-303},
    11798   journal = {Ultramicroscopy},
    11799   volume = {93},
    11800   author = {Rose, H.}
    11801 }
    11802 @inproceedings{Hertzmann2001,
    11803   year = {2001},
    11804   title = {Image Analogies},
    11805   booktitle = {{SIGGRAPH}, Computer Graphics Proceedings},
    11806   pages = {327--340},
    11807   publisher = {ACM Press},
    11808   author = {Hertzmann, A. and Jacobs, C.E. and Oliver, N. and Curless, B. and Salesin, D.H.}
    11809 }
    11810 @article{Rose2005,
    11811   year = {2005},
    11812   title = {Prospects for aberration-free electron microscopy},
    11813   pages = {1-6},
    11814   journal = {Ultramicroscopy},
    11815   volume = {103},
    11816   author = {Rose, H.}
    11817 }
    11818 @article{Rioul1991,
    11819   month = {October},
    11820   year = {1991},
    11821   title = {Wavelets and Signal Processing},
    11822   pages = {14--38},
    11823   journal = {IEEE Signal Processing Magazine},
    11824   author = {Rioul, O. and Vetterli, M.}
    11825 }
    11826 @article{Torok1995,
    11827   number = {2},
    11828   year = {1995},
    11829   title = {Electromagnetic diffraction of light focused through a planar interface between materials of mismatched refractive indices: an integral representation},
    11830   pages = {325-332},
    11831   journal = {Journal of the Optical Society of America A},
    11832   volume = {12},
    11833   author = {{T\"or\"ok}, P. and Varga, P. and Laczik, Z. and Booker, G.R. }
    11834 }
    11835 @article{Acton2001,
    11836   year = {2001},
    11837   title = {Fast Algorithms for Area Morphology},
    11838   pages = {187--203},
    11839   journal = {Digital Signal Processing},
    11840   volume = {11},
    11841   author = {Acton, S.T.}
    11842 }
    11843 @article{Acton2000,
    11844   number = {4},
    11845   month = {April},
    11846   year = {2000},
    11847   title = {Scale Space Classification Using Area Morphology},
    11848   pages = {623--635},
    11849   journal = {IEEE Transactions on Image Processing},
    11850   volume = {9},
    11851   author = {Acton, Scott T. and Mukherjee, Dipti Prasad}
    11852 }
    11853 @article{Vonck2000,
    11854   year = {2000},
    11855   title = {Parameters a?ecting specimen flatness of two-dimensional crystals for electron crystallography},
    11856   pages = {123-129},
    11857   journal = {Ultramicroscopy},
    11858   volume = {85},
    11859   author = {Vonck, J.}
    11860 }
    11861 @book{Bishop1998,
    11862   year = {1998},
    11863   title = {Neural Networks for Pattern Recognition},
    11864   address = {New York},
    11865   publisher = {Oxford University Press},
    11866   author = {Bishop, C.M.}
    11867 }
    11868 @book{Bishop1995,
    11869   year = {1995},
    11870   title = {Neural Networks for Pattern Recognition},
    11871   publisher = {Oxford University Press},
    11872   author = {Bishop, C.M.}
    11873 }
    11874 @misc{Hough1962,
    11875   year = {1962},
    11876   title = {Method and Means for Recognizing Complex Patterns},
    11877   howpublished = {US misc nr. 3069654},
    11878   author = {Hough, P.V.C.}
    11879 }
    11880 @article{Clayton2004,
    11881   year = {2004},
    11882   title = {Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data},
    11883   pages = {1-5},
    11884   journal = {Journal of Microscopy},
    11885   volume = {213},
    11886   author = {Clayton, A.H.A. and Hanley, Q.S. and Verveer, P.J.}
    11887 }
    11888 @article{Maintz1996kort,
    11889   number = {4},
    11890   year = {1996},
    11891   title = {Evaluation of ridge seeking operators for multimodality medical image matching },
    11892   pages = {353--365},
    11893   journal = {PAMI},
    11894   volume = {18},
    11895   author = {Maintz, J.B.A. and Elsen, P.A. van den and Viergever, M.A. }
    11896 }
    11897 @phdthesis{SMALLSMALLGinkel2002,
    11898   year = {2002},
    11899   title = {Image Analysis using Orientation Space based on Steerable Filters},
    11900   address = {Delft, The Netherlands},
    11901   school = {Delft University of Technology},
    11902   author = {Ginkel, M. van}
    11903 }
    11904 @misc{Stereology2000,
    11905   month = {20-25 May},
    11906   year = {2000},
    11907   title = {Summer School on Stereology and Geometric Tomography},
    11908   note = {Sandberg Manor, Denmark},
    11909   howpublished = {www}
    11910 }
    11911 @article{Clayton2002,
    11912   number = {3},
    11913   year = {2002},
    11914   title = {Dynamic Fluorescence Anisotropy Imaging Microscopy in the Frequency Domain {(rFLIM)}},
    11915   pages = {1631-1649},
    11916   journal = {Biophysical Journal},
    11917   volume = {83},
    11918   author = {Clayton, A.H.A. and Hanley, Q.S. and Arndt-Jovin, D.J. and Subramaniam, V. and Jovin, T.M.}
    11919 }
    11920 @article{Desolneux2002,
    11921   number = {10},
    11922   year = {2002},
    11923   title = {Dequantizing image orientation},
    11924   pages = {1129--1140},
    11925   journal = {IEEE Transactions on Image Processing},
    11926   volume = {11},
    11927   author = {Desolneux, A. and Ladjal, S. and Moisan, L. and Morel, J.-M.}
    11928 }
    11929 @inproceedings{Bigun1987,
    11930   month = {June 8-11},
    11931   year = {1987},
    11932   title = {Optimal orientation detection of linear symmetry},
    11933   booktitle = {Proceedings of the first IEEE International Conference on Computer Vision},
    11934   pages = {433-438},
    11935   address = {London},
    11936   publisher = {IEEE Computer Society Press},
    11937   author = {{Big\"un}, J. and Granlund, G.H.}
    11938 }
    11939 @techreport{Bigun1986,
    11940   number = {LIU-TEK-LIC-1986:25},
    11941   title = {Circular Symmetry Models in Image Processing.},
    11942   note = {Thesis No. 85},
    11943   type = {Lic. Thesis},
    11944   address = {{Link\"oping University}, Sweden},
    11945   institution = {Computer Vision Laboratory},
    11946   author = {{Big\"un}, J.}
    11947 }
    11948 @article{Bowie1977a,
    11949   number = {6},
    11950   year = {1977},
    11951   title = {An Analysis Technique for Biological Shape -- {III}},
    11952   pages = {739--746},
    11953   journal = {Acta Cytologica},
    11954   volume = {21},
    11955   author = {Bowie, J.E. and Young, I.T.}
    11956 }
    11957 @article{Glossop1999,
    11958   number = {1},
    11959   month = {April},
    11960   year = {1999},
    11961   title = {An implementation of the Hough Transformation for the Identification and Labeling of Fixed Period Sinusoidal Curves},
    11962   pages = {96--100},
    11963   journal = {Computer Vision and Image Understanding},
    11964   volume = {74},
    11965   annote = {key_radon},
    11966   author = {Glossop, K. and Lisboa, P.J.G. and Russell, P.C. and Siddans, A. and Jones, G.R.}
    11967 }
    11968 @article{Crowley1984,
    11969   number = {2},
    11970   month = {March},
    11971   year = {1984},
    11972   title = {A Representation for Shape Based on Peaks and Ridges in the Difference of Low-Pass Transform},
    11973   pages = {156--170},
    11974   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11975   volume = {6},
    11976   author = {Crowley, J.L. and Parker, A.C.}
    11977 }
    11978 @inproceedings{Kraaijveld2000,
    11979   month = {June 4-7},
    11980   year = {2000},
    11981   title = {Harnessing Advanced Image Analysis Technology for Quantitative Core and Borehole Image Interpretation},
    11982   booktitle = {proceedings of the 41st SPWLA annual symposium, Dallas},
    11983   pages = {paper VV},
    11984   author = {Kraaijveld, M.A. and Epping, W.J.M.}
    11985 }
    11986 @article{Joanicot1987,
    11987   number = {2},
    11988   year = {1987},
    11989   title = {{DNA} conformational studies from electron microscopy. {I. Excluded} volume effect and structure dimensionality},
    11990   pages = {315-326},
    11991   journal = {Biopolymers},
    11992   volume = {26},
    11993   author = {Joanicot, M. and Revet, B.}
    11994 }
    11995 @article{Brown2003,
    11996   number = {8},
    11997   month = {August},
    11998   year = {2003},
    11999   title = {Advances in Computational Stereo},
    12000   pages = {993--1007},
    12001   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12002   volume = {25},
    12003   author = {Brown, M.Z. and Burschka, D. and Hager, G.D.}
    12004 }
    12005 @article{Typke2004,
    12006   year = {2004},
    12007   title = {Electron Microscopy of Biological Macromolecules: Bridging the GAp between What Physics Allows and What We Currently Can Get},
    12008   pages = {21-27},
    12009   journal = {Microscopy and Microanalysis},
    12010   volume = {10},
    12011   author = {Typke, D. and Duwning, K.H. and Glaeser, R.M.}
    12012 }
    12013 @book{Simmonds1982,
    12014   year = {1982},
    12015   title = {A Brief on Tensor Analysis},
    12016   publisher = {Springer-Verlag},
    12017   author = {Simmonds, J.G.}
    12018 }
    12019 @article{Li2004,
    12020   number = {8},
    12021   year = {2004},
    12022   title = {A maximum likelihood approach for image registration using control point and intensity},
    12023   pages = {1115-1127},
    12024   journal = {IEEE Transactions on Image Processing},
    12025   volume = {13},
    12026   author = {Li, W. and Leung, W.}
    12027 }
    12028 @book{Cressie1993,
    12029   edition = {Revised},
    12030   year = {1993},
    12031   title = {Statistics for Spatial Data},
    12032   publisher = {John Wiley \& Sons, inc},
    12033   author = {Cressie, N.A.C.}
    12034 }
    12035 @article{McLaughlin1998,
    12036   number = {4},
    12037   month = {April},
    12038   year = {1998},
    12039   title = {The Hough Transform Versus the Upwrite},
    12040   pages = {396--400},
    12041   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12042   volume = {20},
    12043   annote = {key_radon},
    12044   author = {McLaughlin, R.A. and Alder, M.D.}
    12045 }
    12046 @inproceedings{Rieger2003b,
    12047   series = {LNCS 2756},
    12048   month = {August 25-27 },
    12049   year = {2003},
    12050   title = {Representing Orientation in n-Dimensional Spaces},
    12051   booktitle = {CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands) },
    12052   pages = {17-24},
    12053   editor = {Petkov, N. and Westenberg, M.A.},
    12054   address = {Berlin},
    12055   publisher = {Springer Verlag},
    12056   author = {Rieger, B. and Vliet, L.J. van}
    12057 }
    12058 @article{Rieger2003c,
    12059   number = {3},
    12060   year = {2003},
    12061   title = {Ring Formation in Nanoliter Cups: Quantitative Measurements of Flow in Micromachined Wells},
    12062   pages = {036312},
    12063   journal = {Physical Review E},
    12064   volume = {68},
    12065   author = {Rieger, B. and Doel, L.R. van den and Vliet, L.J. van }
    12066 }
    12067 @inproceedings{Rieger2003a,
    12068   month = {June 4-6},
    12069   year = {2003},
    12070   title = {Affine correction without correspondence applied to 4D cellular motion in confocal microscopy},
    12071   booktitle = {ASCI'03, Proceedings of the 9th Annual Conference of the Advanced School for Computing and Imaging (Lommel, Belgium) },
    12072   editor = {Vassiliadis, S. and Florak, L.M.J. and Heijnsdijk, J.W.J and Steen, A. van den},
    12073   author = {Rieger, B. and Molenaar, C. and Dirks, R.W. and Vliet, L.J. van}
    12074 }
    12075 @article{Grayson1987,
    12076   year = {1987},
    12077   title = {The heat equation shrinks embedded plane curves to round points},
    12078   pages = {285--314},
    12079   journal = {Journal of Differential Geometry},
    12080   volume = {26},
    12081   author = {Grayson, M.}
    12082 }
    12083 @article{Danielsson1990,
    12084   number = {2},
    12085   year = {1990},
    12086   title = {Rotation Invariance in Gradient and Higher Order Derivative Detectors},
    12087   pages = {198--221},
    12088   journal = {Computer Vision, Graphics, and Image Processing},
    12089   volume = {49},
    12090   author = {Danielsson, P.-E. and Seger, O.}
    12091 }
    12092 @article{Hanley2001,
    12093   year = {2001},
    12094   title = {Fluorescence Lifetime Imaging: Multi-point Calibration, Minimum Resolvable Differences, and Artifact Suppression},
    12095   pages = {248-260},
    12096   journal = {Cytometry},
    12097   volume = {43},
    12098   author = {Hanley, Q.S. and Subramaniam, V. and Arndt-Jovin, D.J. and Jovin, T.M.}
    12099 }
    12100 @article{Hanley2002,
    12101   number = {56},
    12102   year = {2002},
    12103   title = {Spectrally resolved fluorescence lifetime imaging microscopy},
    12104   pages = {155-166},
    12105   journal = {Applied Spectroscopy},
    12106   author = {Hanley, Q.S. and Ardent-Jovin, D.J. and Jovin, T.M.}
    12107 }
    12108 @article{Saffman1975,
    12109   number = {8},
    12110   year = {1975},
    12111   title = {Brownian motion in biolocial membranes},
    12112   pages = {3111-3113},
    12113   journal = {Proc. Nat. Acad. Sci. USA},
    12114   volume = {72},
    12115   author = {Saffman, P.G. and {Delbr\"uck}, M.}
    12116 }
    12117 @article{Casadio1999,
    12118   month = {February},
    12119   year = {1999},
    12120   title = {Characterization of the Range of the {Radon} Transform on Homogeneous Trees},
    12121   pages = {11--17},
    12122   journal = {Electronic Research Announcements of the American Mathematical Society},
    12123   volume = {5},
    12124   author = {Casadio Tarabusi, E. and Cohen, J.M. and Colonna, F.}
    12125 }
    12126 @article{Goldberg1991a,
    12127   number = {1},
    12128   year = {1991},
    12129   title = {What Every Computer Scientist Should Know about Floating-Point Arithmetic},
    12130   pages = {5--48},
    12131   note = {A reprint. Extended?},
    12132   journal = {ACM Computing Surveys},
    12133   volume = {23},
    12134   author = {Goldberg, D.}
    12135 }
    12136 @article{Willert1991,
    12137   year = {1991},
    12138   title = {Digital particle image velocimetry},
    12139   pages = {181-193},
    12140   journal = {Experiments in Fluids},
    12141   volume = {10},
    12142   author = {Willert, C.E. and Gharib, M.}
    12143 }
    12144 @article{Soille2001,
    12145   number = {11},
    12146   month = {November},
    12147   year = {2001},
    12148   title = {Directional Morphological Filtering},
    12149   pages = {1313--1329},
    12150   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12151   volume = {23},
    12152   author = {Soille, Pierre and Talbot, Hugues}
    12153 }
    12154 @article{Soille2002,
    12155   year = {2002},
    12156   title = {Short Survey on Morphological Operators Based on Rank Filters},
    12157   pages = {527-535},
    12158   journal = {Pattern Recognition},
    12159   volume = {35},
    12160   author = {Soille, P.}
    12161 }
    12162 @book{Landau1999,
    12163   edition = {third},
    12164   year = {1999},
    12165   title = {Statistical Physics, Part 1},
    12166   publisher = {Butterworth-Heinemann},
    12167   author = {Landau, L.D. and Lifshitz, E.M.}
    12168 }
    12169 @article{Rintoul1997,
    12170   year = {1997},
    12171   title = {Precise determination of the critical threshold and exponents in a three-dimensional continuum percolation model},
    12172   pages = {585--592},
    12173   journal = {J. Phys. A: Math Gen},
    12174   volume = {30},
    12175   author = {Rintoul, M.D. and Torquato, S.}
    12176 }
    12177 @article{Belongie2002,
    12178   number = {4},
    12179   month = {April},
    12180   year = {2002},
    12181   title = {Shape Matching and Object Recognition Using Shape Contexts},
    12182   pages = {509--522},
    12183   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12184   volume = {24},
    12185   author = {Belongie, S. and Malik, J. and Puzicha, J.}
    12186 }
    12187 @phdthesis{Reinders2001,
    12188   year = {2001},
    12189   title = {Feature-Based Visualization of Time-Dependent Data},
    12190   address = {The Netherlands},
    12191   school = {Delft University of Technology},
    12192   author = {Reinders, F.}
    12193 }
    12194 @article{Deans1981,
    12195   number = {2},
    12196   month = {March},
    12197   year = {1981},
    12198   title = {{H}ough Transform from the {R}adon Transform},
    12199   pages = {185--188},
    12200   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12201   volume = {3},
    12202   annote = {key_radon},
    12203   author = {Deans, S.R.}
    12204 }
    12205 @article{Meijering2003,
    12206   number = {4},
    12207   month = {April},
    12208   year = {2003},
    12209   title = {A Note on Cubic Convolution Interpolation},
    12210   pages = {477--479},
    12211   journal = {IEEE Transactions on Image Processing},
    12212   volume = {12},
    12213   author = {Meijering, E. and Unser, M.}
    12214 }
    12215 @article{Meijering2002,
    12216   number = {3},
    12217   month = {March},
    12218   year = {2002},
    12219   title = {A Chronology of Interpolation: From Ancient Astronomy to Modern Signal and Image Processing},
    12220   pages = {319--342},
    12221   journal = {Proceedings of the IEEE},
    12222   volume = {90},
    12223   author = {Meijering, E.}
    12224 }
    12225 @incollection{Jovin1989,
    12226   year = {1989},
    12227   title = {{FRET} Microscopy: Digital Imaging of Fluorescence Resonance Energy Transfer. Application in Cell Biology},
    12228   booktitle = {Cell Structure and Function by Microspectrofluorometry},
    12229   pages = {99-117},
    12230   editor = {Kohen, E.},
    12231   address = {New York},
    12232   publisher = {Academic Press},
    12233   author = {Jovin, T.M. and Arndt-Jovin, D.J.}
    12234 }
    12235 @article{Egner2004,
    12236   number = {1},
    12237   year = {2004},
    12238   title = {{4Pi}-microscopy of the {Golgi} apparatus in live mammalian cells},
    12239   pages = {70-76},
    12240   journal = {Journal of Structural Biology},
    12241   volume = {147},
    12242   author = {Egner, A. and Verrier, S. and Goroshkov, A. and Shing, H-D. and Hell, S.W.}
    12243 }
    12244 @article{Dorst1987,
    12245   year = {1987},
    12246   title = {Length Estimators for Digitized Contours},
    12247   pages = {311--333},
    12248   journal = {Computer Vision, Graphics and Image Processing},
    12249   volume = {40},
    12250   author = {Dorst, L. and Smeulders, A.W.M.}
    12251 }
    12252 @article{Dorst1986,
    12253   number = {2},
    12254   month = {March},
    12255   year = {1986},
    12256   title = {Best Linear Unbiased Estimators for Properties of Digitized Straight Lines},
    12257   pages = {276--282},
    12258   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12259   volume = {8},
    12260   author = {Dorst, L. and Smeulders, A.W.M.}
    12261 }
    12262 @incollection{Olver1994,
    12263   year = {1994},
    12264   title = {Differential invariant signatures and flows in computer vision: a symmetry group approach},
    12265   booktitle = {Geometry-driven diffusion in computer vision},
    12266   pages = {255--306},
    12267   editor = {Ter Haar Romeny B.M.},
    12268   chapter = {11},
    12269   publisher = {Kluwer Academic Publishers},
    12270   author = {Olver, P. and Sapiro, G. and Tannenbaum, A.}
    12271 }
    12272 @techreport{Dorst1980,
    12273   year = {1980},
    12274   title = {A Coordinate System for the Crystal Ball},
    12275   institution = {CERN},
    12276   author = {Dorst, L.}
    12277 }
    12278 @article{Hoyer2002,
    12279   number = {2},
    12280   year = {2002},
    12281   title = {Dependence of $\alpha$-synuclein aggregate morphology on solution conditions},
    12282   pages = {383-393},
    12283   journal = {Journal of Molecular Biology},
    12284   volume = {322},
    12285   author = {Hoyer, W. and Antony, T. and Cherny, D.I. and Heim, G. and Jovin, T.M. and Subramaniam, V.}
    12286 }
    12287 @inproceedings{Ginneken1999,
    12288   series = {Lecture Notes on Computer Science},
    12289   title = {Applications of Locally Orderless Images},
    12290   booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)},
    12291   pages = {10--21},
    12292   editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
    12293   volume = {1682},
    12294   publisher = {Springer-Verlag},
    12295   author = {Ginneken, B. van and Haar Romeny, B. M. ter}
    12296 }
    12297 @article{Mitiche1988,
    12298   number = {6},
    12299   year = {1988},
    12300   title = {On smoothness of a vector field-application to optical flow},
    12301   pages = {943--949},
    12302   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12303   volume = {10},
    12304   author = {Mitiche, A. and Grisell, R. and Aggarwal, J.K.}
    12305 }
    12306 @article{Cognet1999,
    12307   number = {3},
    12308   year = {1999},
    12309   title = {Static curvature and flexibility measurements of {DNA} with microscopy. {A} simple renormalization method, its assessment by experiment and simulation},
    12310   pages = {997-1009},
    12311   journal = {Journal of Molecular Biology},
    12312   volume = {285},
    12313   author = {Cognet, J.A.H. and Pakleza, C. and Cherny, D.I. and Delain, E. and Cam, E. le}
    12314 }
    12315 @article{Segall2006,
    12316   year = {2006},
    12317   title = {Volume-Exclusion Effects in Tethered-Particle Experiments: Bead Size Matters},
    12318   pages = {088306},
    12319   journal = {Physical Review Letters},
    12320   volume = {96},
    12321   author = {Segall, D.E. and Nelson, P.C. and Phillips, R.}
    12322 }
    12323 @article{Krieger1996,
    12324   number = {6},
    12325   month = {June},
    12326   year = {1996},
    12327   title = {Nonlinear Image Operators for the Evaluation of Local Intrinsic Dimensionality},
    12328   pages = {1026--1042},
    12329   journal = {IEEE Transactions on Image Processing},
    12330   volume = {5},
    12331   author = {Krieger, G. and Zetzsche, C.}
    12332 }
    12333 @book{Rudin1991,
    12334   edition = {second},
    12335   year = {1991, 1973},
    12336   title = {Functional Analysis},
    12337   publisher = {McGraw-Hill},
    12338   author = {Rudin, W.}
    12339 }
    12340 @article{Mattfeldt2000a,
    12341   month = {November},
    12342   year = {2000},
    12343   title = {Improved Estimation of the Pair Correlation Function of Random Sets},
    12344   pages = {158--173},
    12345   journal = {Journal of Microscopy},
    12346   volume = {200, Pt 2},
    12347   author = {Mattfeldt, T. and Stoyan, D.}
    12348 }
    12349 @article{Toprak2007,
    12350   number = {7},
    12351   year = {2007},
    12352   title = {Three-Dimensional Particle Tracking via Bifocal Imaging},
    12353   pages = {2043-2045},
    12354   journal = {Nano Letter},
    12355   volume = {7},
    12356   author = {Toprak, E. and Balci, H. and Blehm, B.H. and  Selvin, P.R.}
    12357 }
    12358 @article{Xu2010,
    12359   year = {2010},
    12360   title = {From thickness dependent exit waves to projected potential: Thickness derivative approach},
    12361   pages = {535-542},
    12362   journal = {Ultramicroscopy},
    12363   volume = {110},
    12364   author = {Xu, Q. and Dyck, D. van and Zandbergen, H.W.}
    12365 }
    12366 @article{Zewail2010,
    12367   year = {2010},
    12368   title = {Four-Dimensional Electron Microscopy},
    12369   pages = {187-193},
    12370   journal = {Science},
    12371   volume = {328},
    12372   author = {Zewail, A. H. and }
    12373 }
    12374 @article{Pertsinidis2010,
    12375   year = {2010},
    12376   title = {Subnanometre single-molecule localization, registration and distance measurements},
    12377   journal = {Nature},
    12378   author = {Pertsinidis, A. and Zhang, Y. and Chu, S.}
    12379 }
    12380 @article{Okamoto2010,
    12381   year = {2010},
    12382   title = {Subnanometre single-molecule localization,
    12383 registration and distance measurements},
    12384   pages = {043807},
    12385   journal = {Physical Review A},
    12386   volume = {38},
    12387   author = {Okamoto, H.}
    12388 }
    12389 @article{Muller2010,
    12390   year = {2010},
    12391   title = {Image Scanning Microscopy},
    12392   pages = {198101},
    12393   journal = {Physical Review Letters},
    12394   volume = {104},
    12395   author = {{M\"uller}, C.B. and Enderlein, J.}
    12396 }
    12397 @article{Jonge2010,
    12398   year = {2010},
    12399   title = {Nanometer-resolution electron microscopy through micrometers-thick water layers},
    12400   pages = {1114-1119},
    12401   journal = {Ultramicroscopy},
    12402   volume = {110},
    12403   author = {Jonge, N. de and Poirier-Demes, N. and Dermes, H. and Peckys, D.B. and Drouin, D.}
    12404 }
    12405 @article{Kouskousis2010,
    12406   number = {7},
    12407   year = {2010},
    12408   title = {Super-resolution imaging and statistical analysis
    12409 of {CdSe/CdS} Core/Shell semiconductor nanocrystals},
    12410   pages = {437-445},
    12411   journal = {Journal of Biophotonics},
    12412   volume = {3},
    12413   author = {Kouskousis, B.P. and Embden J. van and Morrish, D. and Russell, S.M. and Gu, M.}
    12414 }
    12415 @article{Stark2001,
    12416   year = {2001},
    12417   title = {Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle},
    12418   pages = {539-541},
    12419   journal = {Nature},
    12420   volume = {409},
    12421   author = {Stark, H. and Dube, P. and {L\"uhrmann}, R. and Kastner, B.}
    12422 }
    12423 @article{Milazzo2010,
    12424   year = {2010},
    12425   title = {Characterization of a direct detection device imaging camera for transmission electron microscopy},
    12426   pages = {744-747},
    12427   journal = {Ultramicroscopy},
    12428   volume = {110},
    12429   author = {Milazzo, A-C. and Moldovan, G. and Lanman, J. and Jin, L. and Bouwer, J.C. and Klienfelder, S. and Peltier, S.T. and Ellisman, M.H. and Kirkland, A.I. and Xoung, N.-H.}
    12430 }
    12431 @article{Lupini2010,
    12432   year = {2010},
    12433   title = {Aberration measurement using the Ronchigram contrast transfer function},
    12434   pages = {891-898},
    12435   journal = {Ultramicroscopy},
    12436   volume = {110},
    12437   author = {Lupini, A.R. and Wang, P. and Nellist, P.D. and Kirkland, A.I. and Pennycook, S.J.}
    12438 }
    12439 @article{Saxton1982,
    12440   number = {2},
    12441   year = {1982},
    12442   title = {The correlation averaging of a regularly arranged bacterial cell envelope protein},
    12443   pages = {127-138},
    12444   journal = {Journal of Microscopy},
    12445   volume = {127},
    12446   author = {Saxton, W.O and Baumeister, W.}
    12447 }
    12448 @article{Rudnaya2010,
    12449   year = {2010},
    12450   title = {Evaluating sharpness functions for automated scanning
    12451 electron microscopy},
    12452   journal = {Journal of Microscopy},
    12453   author = {Rudnaya, M.E. and Mattheij, R.M.M. and Maubach, J.M.L.}
    12454 }
    12455 @inproceedings{Brinkers2010,
    12456   month = {April 14-17},
    12457   year = {2010},
    12458   title = {Single Molecule Detection Of Tuberculosis Nucleic Acid Using Dark Field Tethered Particle Motion},
    12459   booktitle = {IEEE International Symposium on Biomedical Imaging},
    12460   pages = {1269},
    12461   address = {Rotterdam, The Netherlands},
    12462   author = {Brinkers, Sanneke and Dietrich, Heidelinde R. C. and Stallinga, Sjoerd and Mes, Jurriaan J. and Young, Ian T. and Rieger, Bernd}
    12463 }
    12464 @article{Cordes2010,
    12465   year = {2010},
    12466   title = {Single-Molecule Redox Blinking of Perylene Diimide
    12467 Derivatives in Water},
    12468   journal = {Journal of the American Chemical Society},
    12469   author = {Cordes, T. and Vogelsang, J. and Anaya, M. and Spaguolo, C. and Gietl, A. and Summerer, W. and Herrmann, A. and {M\"ullen}, K. and Tinnefeld, P.}
    12470 }
    12471 @article{Jiang2010,
    12472   year = {2010},
    12473   title = {A novel approximation method of CTF amplitude correction of 3D single particle reconstruction},
    12474   journal = {Ultramicroscopy},
    12475   author = {Jiang, L. and Liu, Z. and Georgieva, D. and Kuil, M.E. and Abrahams, J.P.}
    12476 }
    12477 @article{Dwyer2010,
    12478   year = {2010},
    12479   title = {Simulation of scanning transmission electron microscope images on desktop computers},
    12480   pages = {195-198},
    12481   journal = {Ultramicroscopy},
    12482   volume = {110},
    12483   author = {Dwyer, C.}
    12484 }
    12485 @article{Tamura2010,
    12486   year = {2010},
    12487   title = {Third-order spherical aberration correction using multistage self-aligned quadrupole correction-lens systems},
    12488   journal = {Journal of Electron Microscopy},
    12489   author = {Tamrua, K. and Okayama, S. and Shimizu, R.}
    12490 }
    12491 @article{Paik2009,
    12492   number = {8},
    12493   year = {2009},
    12494   title = {Integrating a High-Force Optical Trap with Gold Nanoposts and a Robust Gold-DNA Bond},
    12495   pages = {2978-2983},
    12496   journal = {Nano Letters},
    12497   volume = {9},
    12498   author = {Paik, D.H. and Seol, Y. and Halsey, W.A. and Perkins, T.T.}
    12499 }
    12500 @article{Oijen1998,
    12501   year = {1998},
    12502   title = {3-Dimensional super-resolution by spectrally selective imaging},
    12503   pages = {183-187},
    12504   journal = {Chemical Physics Letters},
    12505   volume = {292},
    12506   author = {Oijen, A.M. van and {K\"ohler}, J. and Schmidt, J. and {M\"uller}, M. and Brakenhoff, G.J.}
    12507 }
    12508 @article{Marzetta1993,
    12509   number = {6},
    12510   year = {1993},
    12511   title = {A Simple derivation of the constrained multiple parameter Cramer-Rao Bound},
    12512   pages = {2247-2249},
    12513   journal = {IEEE Transactions on Signal Processing},
    12514   volume = {41},
    12515   author = {Marzetta, T.L.}
    12516 }
    12517 @article{Mortensen2010,
    12518   number = {5},
    12519   year = {2010},
    12520   title = {Optimized localization analysis for single-molecule tracking and super-resolution microscopy},
    12521   pages = {377-384},
    12522   journal = {Nature Methods},
    12523   volume = {7},
    12524   author = {Mortensen, K.I. and Churchman, L.S. and Spudich, J.A. and Flyvbjerg}
    12525 }
    12526 @article{Chang2010,
    12527   year = {2010},
    12528   title = {Zernike Phase Plate Cryoelectron Microscopy
    12529 Facilitates Single Particle Analysis of Unstained
    12530 Asymmetric Protein Complexes},
    12531   pages = {17-27},
    12532   journal = {Structure},
    12533   volume = {18},
    12534   author = {Chang, W-H. and Chiu, M.T.K. and CHen, C.-Y. and Yen, C.F. and Lin,Y.-C. and Weng, Y.-P. and Chang, J.-C. and Wu, Y.-M. and Cheng, H. and Fu, J. and Tu, I-P.}
    12535 }
    12536 @article{Smith2010,
    12537   number = {5},
    12538   year = {2010},
    12539   title = {Fast, single-molecule localization that achieves theoretically minimum uncertainty},
    12540   pages = {373-375},
    12541   journal = {Nature Methods},
    12542   volume = {7},
    12543   author = {Smith, C.S. and Joseph, N. and Rieger, B. and Lidke, K.A.}
    12544 }
    12545 @article{Serge2008,
    12546   number = {8},
    12547   year = {2008},
    12548   title = {Dynamic multiple-target tracing to probe
    12549 spatiotemporal cartography of cell membranes},
    12550   pages = {687-694},
    12551   journal = {Nature Methods},
    12552   volume = {5},
    12553   author = {Serge, A. and Bertaux, N. and Rigneault, H. and Marguet, D.}
    12554 }
    12555 @article{Aguet2005,
    12556   number = {26},
    12557   year = {2005},
    12558   title = {Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes},
    12559   pages = {10503-10522},
    12560   journal = {Optics Express},
    12561   volume = {13},
    12562   author = {Aguet, F. and Ville, D. van de and Unser, M.}
    12563 }
    12564 @article{Harauz1997,
    12565   number = {4},
    12566   year = {1997},
    12567   title = {Exact filters for general geometry three dimensional reconstruction},
    12568   pages = {146-156},
    12569   journal = {Optik},
    12570   volume = {78},
    12571   author = {Harauz, G. and Heel, M. van}
    12572 }
    12573 @article{Lingwood2009,
    12574   year = {2009},
    12575   title = {Lipid rafts as a membrane organizing principle},
    12576   pages = {46-53},
    12577   journal = {Science},
    12578   volume = {327},
    12579   author = {Lingwood, D. and Simons, K.}
    12580 }
    12581 @article{Baddeley2010,
    12582   year = {2010},
    12583   title = {Visualization of localization microscopy data},
    12584   pages = {64-72},
    12585   journal = {Microscopy and Microanalysis},
    12586   volume = {16},
    12587   author = {Baddeley, D. and Cannell, M.B. and Soeller, C.}
    12588 }
    12589 @inbook{Krivanek2010,
    12590   year = {2010},
    12591   title = {Advances in Imaging and Electron Physics},
    12592   pages = {121-160},
    12593   volume = {153},
    12594   chapter = {Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy},
    12595   publisher = {Elsevier},
    12596   author = {Krivanek, O.L. and Delby, N. and Keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.}
    12597 }
    12598 @article{Jaqaman2008,
    12599   number = {8},
    12600   year = {2008},
    12601   title = {Robust single-particle tracking in live-cell time-lapse sequences},
    12602   pages = {695-702},
    12603   journal = {Nature Methods},
    12604   volume = {5},
    12605   author = {Jaqaman, K. and Loerke, D. and Mettlen, M. and Kuwara, H. and Grinstein, S. and Schmid, S.L. and Danuser, G.}
    12606 }
    12607 @article{Li2010,
    12608   year = {2010},
    12609   title = {Measurement of the Instantaneous Velocity of a Brownian Particle},
    12610   pages = {1673-1676},
    12611   journal = {Science},
    12612   volume = {328},
    12613   author = {Li, T. and Kheifets, S. and Medellin, D. and Raizen, M.G.}
    12614 }
    12615 @article{Kwon2010,
    12616   number = {328},
    12617   year = {2010},
    12618   title = {4D Electron Tomography},
    12619   pages = {1668-1673},
    12620   journal = {Science},
    12621   author = {Kwon, O.-H. and Zewail, A.H.}
    12622 }
    12623 @article{Brinkers2009,
    12624   number = {21},
    12625   year = {2009},
    12626   title = {The Persistence Length of Double Stranded {DNA} Determined Using Dark Field Tethered Particle Motion},
    12627   pages = {215105},
    12628   journal = {Journal of Chemical Physics},
    12629   volume = {130},
    12630   author = {Brinkers, S. and Dietrich, H.R.C. and Groote, F.H. de and Young, I.T. and Rieger, B.}
    12631 }
    12632 @article{Snijdervanderas2009,
    12633   number = {1},
    12634   year = {2009},
    12635   title = {A hybrid total internal reflection fluorescence and optical tweezers microscope to study cell adhesion and membrane protein dynamics of single living cells },
    12636   pages = {84-92},
    12637   journal = {Journal of Microscopy},
    12638   volume = {223},
    12639   author = {Snijder-van As, M.I. and Rieger, B. and Joosten, B. and Figdor, C. and Subramaniam, V. and Kanger, J.S.}
    12640 }
    12641 @article{Faas2009,
    12642   number = {4},
    12643   year = {2009},
    12644   title = {{DNA} deformations near charged surfaces: electron and atomic force microscopy views},
    12645   pages = {1148-1157},
    12646   journal = {Biophysical Journal},
    12647   volume = {97},
    12648   author = {Faas, F.G.A. and Rieger, B. and Vliet, L.J. van and Cherny, D.I.}
    12649 }
    12650 @article{Castaldo2008,
    12651   number = {6},
    12652   year = {2008},
    12653   title = {Sputtering limits versus signal-to-noise limits in the observation of {Sn} balls in a {Ga+} microscope},
    12654   pages = {2107-2115},
    12655   journal = {Journal of Vacuum Science and Technology B},
    12656   volume = {26},
    12657   author = {Castaldo, V. and  Hagen, C.W. Rieger, B. and Kruit, P.}
    12658 }
    12659 @article{Lidke2010,
    12660   year = {2010},
    12661   title = {{ERK} nuclear translocation is dimerization-independent but controlled by the rate of phosphorylation},
    12662   pages = {3092-3102},
    12663   journal = {Journal of Biological Chemistry},
    12664   volume = {285},
    12665   author = {Lidke, D.S. and Huang, F. and Post, J.N. and Rieger, B. and Thomas, J.L.and Pouyssegur, J. and Jovin, T.M. and Lenormand, P. }
    12666 }
    12667 @inbook{Hagen2008,
    12668   year = {2008},
    12669   title = {Single Molecule Dynamics in Life Sciences},
    12670   pages = {117-130},
    12671   editor = {Yanagida, T. and Ishii, Y.},
    12672   chapter = {Dynamics of membrane receptors: single molecule tracking of quantm dot liganded epidermal growth factor},
    12673   publisher = {Wiley},
    12674   author = {Hagen, G.M. and Lidke, K.A. and Rieger, B. and Lidke,  D.S. and Caarls, W. and  Arndt-Jovin, D.J. and Jovin, T.M.}
    12675 }
    12676 @article{Haider2010,
    12677   year = {2010},
    12678   title = {Information Transfer in a TEM Corrected for Spherical
    12679 and Chromatic Aberration},
    12680   pages = {393-408},
    12681   journal = {Microscopy and Microanalysis},
    12682   volume = {16},
    12683   author = {Haider, M .and Hartel, P. and {M\"uller}, H. and Uhlemann, S. and Zach, J.}
    12684 }
    12685 @article{Borgnia2004,
    12686   year = {2004},
    12687   title = {Visualization of $\alpha$-helical features in a density map constructed using 9 molecular images of the {1.8MDa} icosahedral core of pyruvate dehydrogenase},
    12688   pages = {136-145},
    12689   journal = {Journal of Structural Biology},
    12690   volume = {147},
    12691   author = {Borgnia, M.J. and Shi, D. and Zhang, P. and Milne, J.L.S.}
    12692 }
    12693 @article{Dubochet1988,
    12694   year = {1988},
    12695   title = {Cryo-electron microscopy of vitrified specimens},
    12696   pages = {129-228},
    12697   journal = {Quarterly Review of Biophysics},
    12698   volume = {21},
    12699   author = {Dubochet, J. and Adrian, M. and Chang, J.-J. and Homo, J.-C. and Lepault, J. and McDowall, A.W.and Schultz, P.}
    12700 }
    12701 @article{Khursheed2007,
    12702   year = {2007},
    12703   title = {Redesign of the scanning electron microscope for parallel energy spectral acquisition},
    12704   pages = {151-157},
    12705   journal = {Ultramicroscopy},
    12706   volume = {108},
    12707   author = {Khursheed, A. and Hoang, H.Q.}
    12708 }
    12709 @article{Arslan2006,
    12710   year = {2006},
    12711   title = {Reducing the missing wedge: High-resolution dual axis tomography of inorganic materials},
    12712   pages = {944-1000},
    12713   journal = {Ultramicroscopy},
    12714   volume = {106},
    12715   author = {Arslan, I. and Tong, J.R. and Midgley, P.A.}
    12716 }
    12717 @article{Dierksen1992,
    12718   year = {1992},
    12719   title = {Towards automatic electron tomography},
    12720   pages = {71-87},
    12721   journal = {Ultramicroscopy},
    12722   volume = {40},
    12723   author = {Dierksen, K. and Typke, D. and Hegerl, R. and Koster, A.J. and Baumeister, W.}
    12724 }
    12725 @book{Born1999,
    12726   edition = {7th},
    12727   year = {1999},
    12728   title = {Principles of Optics},
    12729   publisher = {Cambridge University Press},
    12730   author = {Born, M. and Wolf, E.}
    12731 }
    12732 @article{Dyck1996,
    12733   year = {1996},
    12734   title = {Sub-{\aa}ngstr{\"o}m structure characterisation: the {Brite-Euram} route towarde one {\AA}ngstr{\"o}m},
    12735   pages = {1-15},
    12736   journal = {Ultramicroscopy},
    12737   volume = {64},
    12738   author = {Dyck, D. van and Lichte, H. and Mast, K.D. van der}
    12739 }
    12740 @article{Billinge2007,
    12741   year = {2007},
    12742   title = {The Problem with Determining Atomic Structure at the Nanoscale},
    12743   pages = {561-565},
    12744   journal = {Science},
    12745   volume = {316},
    12746   author = {Billinge, S.J.L. and Levin, I.}
    12747 }
    12748 @article{Stoeger2008,
    12749   year = {2008},
    12750   title = {Optical properties and bandgaps from low loss EELS: Pitfalls and solutions},
    12751   pages = {1092-1110},
    12752   journal = {Micron},
    12753   volume = {39},
    12754   author = {Stoeger-Pollach, M.}
    12755 }
    12756 @article{Kim1997a,
    12757   year = {1997},
    12758   title = {Performance of Zr/O/W Schottky emitters at reduced temperatures},
    12759   pages = {2284-2288},
    12760   journal = {Journal of Vaccum Science and Technology B},
    12761   volume = {15},
    12762   author = {Kim, H.S. and Yu, M.L. and Thomson, M.G.R. and Kratchmer, E. and Chang, T.H.P.}
    12763 }
    12764 @inproceedings{Mitterbauer2003a,
    12765   year = {2003},
    12766   title = {High energy resolution {EELS} using a monochromoized {200kV TEM}: Comparative investigation of titanum oxides},
    12767   booktitle = {Microscoc. Microanal.},
    12768   pages = {1-2},
    12769   volume = {9S3},
    12770   author = {Mitterbauer, C. and Kothleitner, G. and Hofer, F. and Tiemeijer, P.C. and Freitag, B.H. and Zandbergen, H.W.}
    12771 }
    12772 @article{Gyobu2004,
    12773   year = {2004},
    12774   title = {Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique},
    12775   pages = {325-333},
    12776   journal = {Journal of Structural Biology},
    12777   volume = {146},
    12778   author = {Gyobu, N. and Tani, K. and Hiroaki, Y. and Kamegawa, A. and Mitsuoka, K. and Fujiyoshi, Y.}
    12779 }
    12780 @article{Hebert2003,
    12781   year = {2003},
    12782   title = {A proposal for dichroic experiments in the electron microscope},
    12783   pages = {463-468},
    12784   journal = {Ultramicroscopy},
    12785   volume = {96},
    12786   author = {Hebert, C. and Schattschneider, P.}
    12787 }
    12788 @article{Oshima2010,
    12789   year = {2010},
    12790   title = {Direct imaging of lithium atoms in {$LiV_2O_4$} by spherical aberration-corrected electron microscopy},
    12791   pages = {1-5},
    12792   journal = {Journal of Electron Microscopy},
    12793   author = {Oshima, Y. and et al.}
    12794 }
    12795 @article{Ishitani2002,
    12796   number = {6},
    12797   year = {2002},
    12798   title = {Contrast-to-gradient method for the evaluation of image resolution in scanning electron microscopy},
    12799   pages = {369-382},
    12800   journal = {Journal of Electron Mircoscopy},
    12801   volume = {51},
    12802   author = {Ishitani, T. and Sato, M.}
    12803 }
    12804 @article{Ishitani2005,
    12805   number = {2},
    12806   year = {2005},
    12807   title = {Influence of random noise on the contrast-to-gradient image resolution in scanning electron microscopy},
    12808   pages = {85-97},
    12809   journal = {Journal of Electron Mircoscopy},
    12810   volume = {54},
    12811   author = {Ishitani, T. and Kamiya, C. and Sato, M.}
    12812 }
    12813 @article{Ishitani2004,
    12814   number = {3},
    12815   year = {2004},
    12816   title = {Contrast-to-gradient method for the evaluation of image resolution taking account of random noise in scanning electron microscopy},
    12817   pages = {245-255},
    12818   journal = {Journal of Electron Mircoscopy},
    12819   volume = {53},
    12820   author = {Ishitani, T. and Sato, M.}
    12821 }
    12822 @article{Loane1991,
    12823   year = {1991},
    12824   title = {Thermal vibrations in convergent-beam electron diffraction},
    12825   pages = {267-278},
    12826   journal = {Acta Crystallography},
    12827   volume = {A47},
    12828   author = {Loane, R.F. and Xu, P. and Slicox, J.}
    12829 }
    12830 @article{Zaneti2009,
    12831   year = {2009},
    12832   title = {Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging},
    12833   pages = {305-312},
    12834   journal = {Journal of Structural Biology},
    12835   volume = {168},
    12836   author = {Zaneti, G. and Riches, J.D. and Fuller, S.D. and Briggs, J.A.G.}
    12837 }
    12838 @article{Diez2006,
    12839   number = {2},
    12840   year = {2006},
    12841   title = {Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis},
    12842   pages = {195-205},
    12843   journal = {Journal of Strcutural Biology},
    12844   volume = {154},
    12845   author = {Diez, D.C. and Seybert, A. and Frangakis, A.S.}
    12846 }
    12847 @article{Diez2007,
    12848   year = {2007},
    12849   title = {Implementation and performance evaluation of reconstruction algorithms on graphics processors},
    12850   pages = {288-295},
    12851   journal = {Journal of Strcutural Biology},
    12852   volume = {157},
    12853   author = {Diez, C.D. and Mueller, H. and Frangakis, A.S.}
    12854 }
    12855 @article{Barth1996,
    12856   year = {1996},
    12857   title = {Addition of different contributions to the charged particle probe size},
    12858   pages = {101-109},
    12859   journal = {Optik},
    12860   volume = {101},
    12861   author = {Barth, J. E. and Kruit, P.}
    12862 }
    12863 @article{Uchida2010,
    12864   year = {2010},
    12865   title = {Generation of electron beams carrying orbital angular momentum},
    12866   journal = {Nature},
    12867   volume = {464},
    12868   author = {Uchida, M. and Tonomura, A.}
    12869 }
    12870 @article{Jacobsen2001,
    12871   number = {2},
    12872   year = {2001},
    12873   title = {Soft X-ray spectroscopy from image sequences with sub-100nm spatial resolution},
    12874   pages = {173-184},
    12875   journal = {Journal of Microscopy},
    12876   volume = {197},
    12877   author = {Jacobsen, C. and Wirick, S. and Flynn, G. and Zimba, C.}
    12878 }
    12879 @article{Hammel1995,
    12880   year = {1995},
    12881   title = {Optimum rotationally symmetric detector configurations for phase-contrast imaging in scanning transmission electron microscopy},
    12882   pages = {403-415},
    12883   journal = {Ultramicroscopy},
    12884   volume = {58},
    12885   author = {Hammel, M. and Rose, H.}
    12886 }
    12887 @article{Braat2005,
    12888   number = {12},
    12889   year = {2005},
    12890   title = {Extended {Nijboer-Zernike} approach to aberration and birefringence retrieval in a high-numerical-aperture optical system},
    12891   pages = {2635-26550},
    12892   journal = {Journal of the Optical Society of America A},
    12893   volume = {22},
    12894   author = {Braat, J.J.M. and Dirksen, P. and Janssen, A.J.E.M. and Haver, S. van and Nes, S. van de}
    12895 }
    12896 @article{Swanson2009,
    12897   year = {2009},
    12898   title = {A review of the cold-field electron cathode},
    12899   pages = {63-100},
    12900   journal = {Advances in Imaging and Electron Physics},
    12901   volume = {159},
    12902   author = {Swanson, L.W. and Schwind, G.A.}
    12903 }
    12904 @article{Nakanishi2005,
    12905   year = {2005},
    12906   title = {An expanded approach to noise reduction from high-resolution STEM images based on the maximum entropy method},
    12907   note = {accepted},
    12908   journal = {Ultramicroscopy},
    12909   author = {Nakanishi, N. and Kotaka, Y. and Yamazaki, T.}
    12910 }
    12911 @article{Carragher2000,
    12912   year = {2000},
    12913   title = {Leginon: an automated system for acquisition of images from vitrecus ice specimens},
    12914   pages = {33-45},
    12915   journal = {Journal of Structural Biology},
    12916   volume = {132},
    12917   author = {Carragher, B. and Kisseberth, N. and Kriegman, D. and Milligan, R.A. and Potter, C.S. and Pulokas, J. and Reilein, A.}
    12918 }
    12919 @article{Finn2000,
    12920   number = {24},
    12921   year = {2000},
    12922   title = {Escherichia coli {RNA} polymerase core and holoenzyme structures},
    12923   pages = {6833-6844},
    12924   journal = {EMBO Journal},
    12925   volume = {19},
    12926   author = {Finn, R.D. and Orlova, E.V. and Gowen, B. and Buck, M. and Heel, M. van}
    12927 }
    12928 @article{Rubenstein2007,
    12929   year = {2007},
    12930   title = {Structural analysis of membrane protein complexes by single particle electron microscopy},
    12931   pages = {409-416},
    12932   journal = {Methods},
    12933   volume = {41},
    12934   author = {Rubenstein, J.L.}
    12935 }
    12936 @article{Wang2007,
    12937   year = {2007},
    12938   title = {Probing the electronic structure of ZnO nanowires by valence electron energy loss spectroscopy},
    12939   pages = {346-353},
    12940   journal = {Micron},
    12941   volume = {38},
    12942   author = {Wang, J. and Li, Q. and Egerton, R.F.}
    12943 }
    12944 @article{Wang2004,
    12945   year = {2004},
    12946   title = {Off-axis electron holography with a dual-lens imaging system andits usefulness in 2-D potential mapping of semiconductor devices},
    12947   pages = {63-72},
    12948   journal = {Ultramicroscopy},
    12949   volume = {101},
    12950   author = {Wang, Y.Y. and Kawasaki, M. and Bruley, J. and Gribelyuk, M. and Domenicucci, A. and Gaudiello, J.}
    12951 }
    12952 @article{Wang2008,
    12953   year = {2008},
    12954   title = {Nanomaterial electronic structure investigation by valence electron energy loss spectroscopy - An example of doped ZnO nanowires},
    12955   pages = {703-708},
    12956   journal = {Micron},
    12957   volume = {39},
    12958   author = {Wang, J. and Li, Q. and Ronning, C. and Stichtenoth, D. and Muller, S. and Tang, D.}
    12959 }
    12960 @article{Okayama2005,
    12961   number = {4},
    12962   year = {2005},
    12963   title = {Reference sample for the evaluation of {SEM} image resolution at a high magnification - nanometer-scale {Au} particles on an {HOPG} substrate},
    12964   pages = {345-350},
    12965   journal = {Journal of Electron Mircoscopy},
    12966   volume = {54},
    12967   author = {Okayama, S. and Haraichi, S. and Matsuhata, H.}
    12968 }
    12969 @book{Slayter1992,
    12970   year = {1992},
    12971   title = {Ligth and Electron Microscopy},
    12972   address = {Cambridge, United Kingdom},
    12973   publisher = {Cambridge University Press},
    12974   author = {Slayter,E.M. and Slayter, H.S.}
    12975 }
    12976 @article{Ortalan2009,
    12977   year = {2009},
    12978   title = {Application of image processing to STEM tomography of low-contrast materials},
    12979   pages = {67-81},
    12980   journal = {Ultramicroscopy},
    12981   volume = {110},
    12982   author = {Ortalan, V. and Herra, M. and Morgan, D.G. and Browning, N.D.}
    12983 }
    12984 @article{Lazar2010,
    12985   year = {2010},
    12986   title = {Imaging, Core-Loss, and Low-Loss Electron-Energy-Loss Spectroscopy Mapping in Aberration-Corrected STEM},
    12987   pages = {1-9},
    12988   journal = {Microscopy and Microanalysis},
    12989   volume = {16},
    12990   author = {Lazar, S. and Shao, Y. and Gunawan, L. and Nechache, R. and Pignolet, A. and Botton, G.A.}
    12991 }
    12992 @article{Takaoka2006,
    12993   year = {2006},
    12994   title = {Observations of unstained biological specimens using a low-energy, high-resolution STEM},
    12995   pages = {157-163},
    12996   journal = {Journal of Electron Microscopy},
    12997   volume = {55},
    12998   author = {Takaoka, A. and Hasegawa, T.}
    12999 }
    13000 @article{Batson2002,
    13001   year = {2002},
    13002   title = {Sub-{\AA}ngstrom resolution using aberration corrected electron optics},
    13003   pages = {617-622},
    13004   journal = {Nature},
    13005   volume = {418},
    13006   author = {Batson, P.E. and Dellby, N. and Krivanek, O.L.}
    13007 }
    13008 @article{Batson2006,
    13009   year = {2006},
    13010   title = {Characterizing probe performance in the aberration corrected {STEM}},
    13011   pages = {1104-1114},
    13012   journal = {Ultramicroscopy},
    13013   volume = {106},
    13014   author = {Batson, P.E.}
    13015 }
    13016 @article{Wang2007a,
    13017   year = {2007},
    13018   title = {Local electronic structure and luminescence properties of Er doped ZnO nanowires},
    13019   pages = {221917},
    13020   journal = {Applied Physics Letters},
    13021   volume = {89},
    13022   author = {Wang, J. and Zhou, M.J. and Hark, S.K. and Li, Q.}
    13023 }
    13024 @article{Eisebit2004,
    13025   year = {2004},
    13026   title = {Lensless imaging of magnetic nanostructures by {X-ray} spectro-holography},
    13027   pages = {885-888},
    13028   journal = {Nature},
    13029   volume = {432},
    13030   author = {Eisebit, S. and {J\"uning}, J. and Schlotter, W.F. and {L\"orgen}, M. and Hellwig, O. and Eberhardt, W. and {St\"ohr}, J.}
    13031 }
    13032 @phdthesis{Tuggle1984,
    13033   year = {1984},
    13034   title = {Emission Characteristics and Electron optical properties of the ZrO/W point cathode},
    13035   address = {Oregon State University},
    13036   school = {Oregon, USA},
    13037   author = {Tuggle, D.W.}
    13038 }
    13039 @article{Cowley1959a,
    13040   year = {1959},
    13041   title = {The Scattering of Electrons by Atoms and Crystals. {III.} {The} Single-Crytal Diffraction Patterns},
    13042   pages = {360-368},
    13043   journal = {Acta Crystallography},
    13044   volume = {12},
    13045   author = {Cowley, J.M. and Moodie, A.F.}
    13046 }
    13047 @article{Harrach2009,
    13048   year = {2009},
    13049   title = {Development of the 300-kV Vacuum Generator STEM (1985-1996)},
    13050   pages = {287-322},
    13051   journal = {Advances in Imaging and Electron Physics},
    13052   volume = {159},
    13053   author = {Harrach, H.S. von}
    13054 }
    13055 @article{Plaisier2007,
    13056   year = {2007},
    13057   title = {Cyclops: New modular software suite for cryo-EM},
    13058   pages = {19-27},
    13059   journal = {Journal of Strcutural Biology},
    13060   volume = {157},
    13061   author = {Plaisier, J.R. and Jiang, L. and Abrahams, J.P.}
    13062 }
    13063 @article{Benthem2006,
    13064   year = {2006},
    13065   title = {Three-dimensional {ADF} imaging of individual atoms by through-focal series scanning transmission electron microscopy},
    13066   pages = {1062-1068},
    13067   journal = {Ultramicroscopy},
    13068   volume = {106},
    13069   author = {Benthem, K. van and Lupini, A.R. and Oxley, M.P. and Findlay, S.D. and Alleen, L.J. and Pennycook, S.J.}
    13070 }
    13071 @misc{Rieger2009,
    13072   year = {2009},
    13073   title = {Method for determining the aberration coefficients of the aberration function of a particle-opticle lens},
    13074   howpublished = {EP1804272},
    13075   author = {Zande, M. van der and Kok, C. and Rieger, B.},
    13076   organization = {FEI Company}
    13077 }
    13078 @article{Fujita2005,
    13079   number = {5},
    13080   year = {2005},
    13081   title = {A new evaluation method of electron optical performance of high beam current probe forming systems},
    13082   pages = {413-427},
    13083   journal = {Journal of Electron Mircoscopy},
    13084   volume = {54},
    13085   author = {Fujita, S. and Shimoyama, H.}
    13086 }
    13087 @article{Heel1997,
    13088   year = {1997},
    13089   title = {Angular reconstitution in three-dimensional electron microscopy: historical and theoretical aspects},
    13090   pages = {195-210},
    13091   journal = {Scanning Microscopy},
    13092   volume = {11},
    13093   author = {Heel, M. van and Orlova, E.V. and Harauz, G. and Stark, H. and Dube, P. and Zemlin, F. and Schatz, M.}
    13094 }
    13095 @article{Sawada2010,
    13096   year = {2010},
    13097   title = {Higher-order aberration corrector for an image-forming system in a transmission electron microscope},
    13098   pages = {1-4},
    13099   journal = {Ultramicroscopy},
    13100   author = {Sawada, H. and Sasaki, T. and Hosokawa, F. and Yuasa, S. and Terao, M. and Kawazoe, M. and Nakamichi, T. and Kaneyama, T. and Kondo. Y. and Kimoto, K. and Suenaga, K.}
    13101 }
    13102 @article{Rau1999,
    13103   number = {12},
    13104   year = {1999},
    13105   title = {Two-Dimensional Mapping of the Electrostatic Potential in Transistors by Electron Holography},
    13106   pages = {2614-2617},
    13107   journal = {Physical Review Letters},
    13108   volume = {82},
    13109   author = {Rau, W.D. and Schwander, P. and Baumann, F.H. and Hoeppner, W. and Ourmazd, A.}
    13110 }
    13111 @article{Kishita2009,
    13112   year = {2009},
    13113   title = {Development of an analytical environmental TEM system and its application},
    13114   pages = {331-339},
    13115   journal = {Journal of Electron Microscopy},
    13116   volume = {58},
    13117   author = {Kishita, K. and Sakai, H. and Tanaka, H. and Saka, H. and Kuroda, K. and Sakamoto, M. and Watabe, A. and Kamnio, T.}
    13118 }
    13119 @article{Bartle2008,
    13120   year = {2008},
    13121   title = {Energy width reduction using an electrostatic Omega-monochromator},
    13122   pages = {479},
    13123   journal = {Physics Procedia},
    13124   volume = {1},
    13125   author = {Bartle, J. and Plies, E.}
    13126 }
    13127 @article{Armstrong2007,
    13128   year = {2007},
    13129   title = {Practical considerations for high spatial and temporal resolution dynamic transmission electron microscopy},
    13130   pages = {356-367},
    13131   journal = {Ultramicroscopy},
    13132   volume = {107},
    13133   author = {Armstrong, M. R. and Boyden, K. and Browning, N.D. and Campbell, G.H. and Colvin, J.D. and DeHope, W.J. and Frank, A.M. and hartemann, F. and Kim, J.S. and King, W.E. and LaGrange, T.B. and Pyke, B.J. and Reed, B.W. and Shuttleswoth, M. and Stuart, B.C. and Torralava, B.R.}
    13134 }
    13135 @article{Lichte1993,
    13136   year = {1993},
    13137   title = {Parameters for gih-resolution electron holography},
    13138   pages = {15-20},
    13139   journal = {Ultramicroscopy},
    13140   volume = {51},
    13141   author = {Lichte, H.}
    13142 }
    13143 @article{Blom2006,
    13144   year = {2006},
    13145   title = {Early Results from an Aberration-Corrected {JEOL 2200FS} {STEM/TEM} at {Oak} {Ridge} {National} {Laboratory}},
    13146   pages = {483-491},
    13147   journal = {Microscopy and Microanalysis},
    13148   volume = {12},
    13149   author = {Blom, D.A. and Allard, L.F. and Mishina, S. and O'Keefe, M.A.}
    13150 }
    13151 @article{Zach2009,
    13152   year = {2009},
    13153   title = {Chromatic correction: a revolution in electron microscopy?},
    13154   pages = {3699-3707},
    13155   journal = {Philosophical Transactions of the Royal Society},
    13156   volume = {367},
    13157   author = {Zach2009}
    13158 }
    13159 @article{Arslan2005,
    13160   year = {2005},
    13161   title = {Embedded nanostructures revealed in three dimensions},
    13162   pages = {2195-2198},
    13163   journal = {Sciences},
    13164   volume = {309},
    13165   author = {Arslan, I. and Yates, T.J.V. and Browning, N.D. and Midgley, P.A.}
    13166 }
    13167 @article{Urban2008,
    13168   year = {2008},
    13169   title = {Studying Atomic Structures by Aberration-Corrected Transmission Electron Microscopy},
    13170   pages = {506-510},
    13171   journal = {Science},
    13172   volume = {321},
    13173   author = {Urban, K.}
    13174 }
    13175 @article{Christenson1988,
    13176   year = {1988},
    13177   title = {Skew thoughts on parallelism},
    13178   pages = {113-132},
    13179   journal = {Ultramicroscopy},
    13180   volume = {26},
    13181   author = {Christenson, K.K. and Eades, J.A.}
    13182 }
    13183 @article{Lupini2003,
    13184   year = {2003},
    13185   title = {Localization in Elastic and Inelastic Scattering},
    13186   pages = {313-322},
    13187   journal = {Ultramicroscopy},
    13188   volume = {96},
    13189   author = {Lupini, A.R. and Pennycook, S.J.}
    13190 }
    13191 @article{Loane1992,
    13192   year = {1992},
    13193   title = {Incoherent imaging of zone axis crystals with {ADF STEM}},
    13194   pages = {121-138},
    13195   journal = {Ultramicroscopy},
    13196   volume = {40},
    13197   author = {Loane, R.F. and Xu, P. and Slicox, J.}
    13198 }
    13199 @phdthesis{Lupini2001,
    13200   year = {2001},
    13201   title = {Aberration correction in {STEM}},
    13202   note = {Copy Bernd Rieger},
    13203   address = {Cambridge, United Kingdom},
    13204   school = {University of Cambridge},
    13205   author = {Lupini, A.R.}
    13206 }
    13207 @article{Deptuch2007,
    13208   year = {2007},
    13209   title = {Direct electron imaging in electron microscopy with monolithic active pixel sensors},
    13210   pages = {674-684},
    13211   journal = {Ultramicroscopy},
    13212   volume = {107},
    13213   author = {Deptuch, G. and Besson, A. and Rehak, P. and Szelezniak, M. and Wall, J. and Winter, M. and Zhu, Y.}
    13214 }
    13215 @article{Yamasaki2005,
    13216   number = {2},
    13217   year = {2005},
    13218   title = {First experiments of selected area nano-diffraction from semiconductor interfaces using a spherical aberration corrected {TEM}},
    13219   pages = {123-126},
    13220   journal = {Journal of Electron Microscopy},
    13221   volume = {54},
    13222   author = {Yamasaki, J. and Sawada, H. and Tanaka, N.}
    13223 }
    13224 @article{Rodenburg2006,
    13225   year = {2006},
    13226   title = {Transmission microscopy without lenses for objects of unlimited size},
    13227   pages = {227-231},
    13228   journal = {Ultramicroscopy},
    13229   volume = {107},
    13230   author = {Rodenburg, J.M. and Hurst, A.C. and Cullis, A.G.}
    13231 }
    13232 @article{Stewart2004,
    13233   year = {2004},
    13234   title = {Noise bias in the refinement of structures deried from single particles},
    13235   pages = {67-84},
    13236   journal = {Ultramicroscopy},
    13237   volume = {102},
    13238   author = {Stewart, A. and Grigorieff, N.}
    13239 }
    13240 @inproceedings{CheynetXXXX,
    13241   title = {{VEELS} experiments using a monochromated {FEG-TEM}},
    13242   pages = {1-2},
    13243   author = {Cheynet, M.C. and Tichelaar, F.R. and Lazar, S. and Jullian, S. and Pantel, R.}
    13244 }
    13245 @article{Fan1996,
    13246   number = {3},
    13247   year = {1996},
    13248   title = {A new electron-optical mode for high contrast imaging and online stereo observation in {TEM}},
    13249   pages = {137-146},
    13250   journal = {Journal of Microscopy},
    13251   volume = {2},
    13252   author = {Fan, G.Y. and Young, S.J. and Deerinck, T. and Ellisman, M.H.}
    13253 }
    13254 @inproceedings{SaorzanoXXXX,
    13255   title = {Transfer function restoration in {3D} electron microscopy via iterative data refinement},
    13256   pages = {1-4},
    13257   author = {Sorzano, C.O.S. and {Fern\'andez}, J.J. and Marabini, R. and Herman, G.T. and Censor, Y. and Carazo, J.M.}
    13258 }
    13259 @article{Miao2002,
    13260   year = {2002},
    13261   title = {Atomic Resolution Three-Dimensional Electron Diffraction Microscopy},
    13262   journal = {Physical Review Letters},
    13263   volume = {89},
    13264   author = {Miao, J. and Ohsuna, T. and Terasaki, O. and Hodgson, K.O. and O'Keefe, M.A.}
    13265 }
    13266 @article{Lentzen2004,
    13267   year = {2004},
    13268   title = {The tuning of a {Zernike} phase plate with defocus and variable spherical aberration and its use in {HRTEM} imaging},
    13269   pages = {211-220},
    13270   journal = {Ultramicroscopy},
    13271   volume = {99},
    13272   author = {Lentzen, M.}
    13273 }
    13274 @article{Lentzen2002,
    13275   year = {2002},
    13276   title = {High-resolution imaging with an aberration-corrected transmission electron microscope},
    13277   pages = {233-242},
    13278   journal = {Ultramicroscopy},
    13279   volume = {92},
    13280   author = {Lentzen, M. and Jahnen, B. and Jia, C.L. and Thust, A. and Tillmann, K. and Urban, K.}
    13281 }
    13282 @article{Cowley1957,
    13283   year = {1957},
    13284   title = {The Scattering of Electrons by Atoms and Crystals. {I.} {A} New Theorectial Approach},
    13285   pages = {609-620},
    13286   journal = {Acta Crystallography},
    13287   volume = {10},
    13288   author = {Cowley, J.M. and Moodie, A.F.}
    13289 }
    13290 @article{Sander2005,
    13291   year = {2005},
    13292   title = {Advantages of CCD detectors for de novo three-dimensional structure determination in single-particle electron microscopy},
    13293   pages = {92-105},
    13294   journal = {Journal of Structural Biology},
    13295   volume = {151},
    13296   author = {Sander, B. and Golas, M.M. and Stark, H.}
    13297 }
    13298 @article{Alloyeau2009,
    13299   year = {2009},
    13300   title = {Atomic-resolution three-dimensional imaging of germanium self-interstitials near a surface: Aberration-corrected transmission electron microscopy},
    13301   pages = {014114},
    13302   journal = {Physical Review B},
    13303   volume = {80},
    13304   author = {Alloyeau, D. and Freitag, B. and Dag, S. and Wang, L.W. and Kisielowski, C.}
    13305 }
    13306 @article{Fujiyoshi1998,
    13307   year = {1998},
    13308   title = {The structural study of membranse proteins by electron crystallography},
    13309   pages = {25-80},
    13310   journal = {Adv. Biophysics},
    13311   volume = {35},
    13312   author = {Fujiyoshi, Y.}
    13313 }
    13314 @article{Cowley1959,
    13315   year = {1959},
    13316   title = {The Scattering of Electrons by Atoms and Crystals. {II.} {The} Effect of Finite Source Size},
    13317   pages = {353-360},
    13318   journal = {Acta Crystallography},
    13319   volume = {12},
    13320   author = {Cowley, J.M. and Moodie, A.F.}
    13321 }
    13322 @article{Baba2001,
    13323   year = {2001},
    13324   title = {An auto-tunning method for focusing and astigmatism correction in HAADF-STEM, based on the image contrast transfer function},
    13325   pages = {163-176},
    13326   journal = {Journal of Electron Micrsocopy},
    13327   volume = {50},
    13328   author = {Baba, N. Teryama, K. and Yoshimizu, T. and Ichise, N. and Tanaka, N.}
    13329 }
    13330 @article{Miyashita2004,
    13331   number = {6},
    13332   year = {2004},
    13333   title = {Direct observation of electrostatic microfields by four-electron-wave interference using two electron biprisms},
    13334   pages = {577-582},
    13335   journal = {Journal of Electron Microscopy},
    13336   volume = {53},
    13337   author = {Miyashita, K. and Yamamoto, K. and Hirayama, T. and Tanji, T.}
    13338 }
    13339 @article{Barthel2008,
    13340   year = {2008},
    13341   title = {Quantification of the Information Limit of Transmission Electron Microscopes},
    13342   pages = {200801},
    13343   journal = {Physical Review Letters},
    13344   volume = {101},
    13345   author = {Barthel, J. and Thust, A.}
    13346 }
    13347 @inproceedings{Barthel2005,
    13348   year = {2005},
    13349   title = {Ultra-Precise Measurement of Optical Aberrations for Sub-\AA ngstrom {HRTEM}},
    13350   booktitle = {{Dreil\"andertagung}, 28 August - 2 September, Davos, Zwitserland},
    13351   author = {Barthel, J. and Thust, A.}
    13352 }
    13353 @article{Winkler2007,
    13354   year = {2007},
    13355   title = {3D reconstruction and processing of volumetric data in cryo-electron tomography},
    13356   pages = {126-137},
    13357   journal = {Journal of Strcutural Biology},
    13358   volume = {157},
    13359   author = {Winkler, H.}
    13360 }
    13361 @article{Kohl1985,
    13362   year = {1985},
    13363   title = {Theory of image formation by inelastically scattered electrons in the electron microscope},
    13364   pages = {173-224},
    13365   journal = {Advances in Electronics and Electron Physics},
    13366   volume = {65},
    13367   author = {Kohl, H. and Rose, H.}
    13368 }
    13369 @article{Henderson1992,
    13370   year = {1992},
    13371   title = {Image contrast in high-resolution electron microscopy of biological macromlecules: {TMV} in ice},
    13372   pages = {1-18},
    13373   journal = {Ultramicroscopy},
    13374   volume = {46},
    13375   author = {Henderson, R.}
    13376 }
    13377 @article{Einspahr2006,
    13378   year = {2006},
    13379   title = {Prospects for {3D}, nanometer-resolution imaging by confocal {STEM}},
    13380   pages = {1041-1052},
    13381   journal = {Ultramicroscopy},
    13382   volume = {106},
    13383   author = {Einspahr, J.J. and Voyles, P.M.}
    13384 }
    13385 @article{Bohm2000,
    13386   year = {2000},
    13387   title = {Toward detecting and identifying macromolecules in a cellular context: Template matching applied to electron tomograms},
    13388   pages = {14245-14250},
    13389   journal = {Biophysical Journal},
    13390   volume = {97},
    13391   author = {{B\"ohm}, J. and Frangakis, A.S. and Hegerl, R. and Nickell, S. and Typke, D. and Baumeister, W.}
    13392 }
    13393 @article{Zhou1996,
    13394   number = {1},
    13395   year = {1996},
    13396   title = {{CTF} Determination of Images of Ice-Embedded Single Particles Using from Cryoelectron Micrographs to Subnanometer Resolution},
    13397   pages = {216-22},
    13398   journal = {Journal of Strcutural Biology},
    13399   volume = {116},
    13400   author = {Zhou, Z.H. and Hardt, S. and Wang, B. and Sherman, M.B. and Jakana, J. and Chiu, W.}
    13401 }
    13402 @article{Mitome2009,
    13403   year = {2009},
    13404   title = {Quantitativeness of phase measurement by transport of intensity equation},
    13405   pages = {1-9},
    13406   journal = {Journal of electron microscopy},
    13407   author = {Mitome, M. and Ishizuka, K. and Bando, Y.}
    13408 }
    13409 @article{Schiske1956,
    13410   year = {1956},
    13411   title = {Die untere Grenze des Farbfehlers magnetischer Linsen bei vorgeschriebener Maximalfeldstaerke},
    13412   pages = {502-503},
    13413   journal = {Optik},
    13414   volume = {13},
    13415   author = {Schiske, P.}
    13416 }
    13417 @article{Edgcombe1999,
    13418   year = {1999},
    13419   title = {Robust optimization for magnetic lens design},
    13420   pages = {306-309},
    13421   journal = {Nuclear Instruments and Methods in Physics Research A},
    13422   volume = {427},
    13423   author = {Edgcombe, C.J. and Lupini, A.R. and Taylor, J.H.}
    13424 }
    13425 @article{Abajo2010,
    13426   year = {2010},
    13427   title = {Optical excitations in electron microscopy},
    13428   pages = {209-275},
    13429   journal = {REVIEWS OF MODERN PHYSICS},
    13430   volume = {82},
    13431   author = {Abajo, F.J. Garcia de}
    13432 }
    13433 @article{Chang2006,
    13434   year = {2006},
    13435   title = {On the importance of fifth-order spherical aberration for a fully corrected electron microscope},
    13436   pages = {in press},
    13437   journal = {Ultramicroscopy},
    13438   author = {Chang, L.Y. and Kirkland, A.I. and Tichmarsh, J.M.}
    13439 }
    13440 @article{Treacy2007,
    13441   year = {2007},
    13442   title = {When structural noise is the signal: Speckle statistics in fluctuation electron microscopy},
    13443   pages = {166-171},
    13444   journal = {Ultramicroscopy},
    13445   volume = {107},
    13446   author = {Treacy, M.M.J.}
    13447 }
    13448 @article{Yi2010,
    13449   year = {2010},
    13450   title = {Flexible formation of coherent probes on an aberrationcorrected STEM with three condensers},
    13451   pages = {1-7},
    13452   journal = {Journal of Electron Microscopy},
    13453   author = {Yi, F. and Tiemeijer, P. and Voyles, P.M.}
    13454 }
    13455 @article{Erni2005,
    13456   year = {2005},
    13457   title = {Analysis of extraterrestrial particles using monochromated electron energy-loss spectroscopy},
    13458   pages = {369-379},
    13459   journal = {Micron},
    13460   volume = {36},
    13461   author = {Erni, R. and Browning, N.D. and Dia, Z.R. and Bradley, J.P.}
    13462 }
    13463 @article{Erni2006,
    13464   year = {2006},
    13465   title = {Atomic Scale Analysis of Planar Defects in Polycrystalline Diamond},
    13466   pages = {492-497},
    13467   journal = {Microscopy and Microanalysis},
    13468   volume = {12},
    13469   author = {Erni, R. and Freitag, B. and Hartel, P. and {M\"uller}, H. and Tiemeijer, P. and Stam, M. van der and Stekelenburg, M. and Hubert, D. and Specht, P. and Garibay-Febles, V.}
    13470 }
    13471 @article{Erni2007,
    13472   year = {2007},
    13473   title = {Quantification of the size-dependent energy gap of individual {CdSe} quantum dots by valence electron energy-loss spectroscopy},
    13474   pages = {267-273},
    13475   journal = {Ultramicroscopy},
    13476   volume = {107},
    13477   author = {Erni, R. and Browning, N.D.}
    13478 }
    13479 @article{Peng2004,
    13480   year = {2004},
    13481   title = {{HAADF-STEM} Imaging With Sub-{\AA}ngstrom Probes, a full Bloch wave analysis},
    13482   pages = {257},
    13483   journal = {Journal of Electron Microscopy},
    13484   volume = {53},
    13485   author = {Peng, Y. and Nellist, P.D. and Pennycook, S.J.}
    13486 }
    13487 @article{Erni2008,
    13488   year = {2008},
    13489   title = {Prospects for analyzing the electronic properties in nanoscale systems by {VEELS}},
    13490   pages = {270-276},
    13491   journal = {Ultramicroscopy},
    13492   volume = {108},
    13493   author = {Erni, R. and Lazar, S. and Browning, N.D.}
    13494 }
    13495 @article{Erni2009,
    13496   year = {2009},
    13497   title = {Atomic-resolution Imaging with sub-50-pm Electron Probe},
    13498   pages = {096101},
    13499   journal = {Physical Review Letters},
    13500   volume = {102},
    13501   author = {Erni, R. and Rossell, M.D. and Kisielowski, C. and Dahmen, U.}
    13502 }
    13503 @article{Malac2007,
    13504   year = {2007},
    13505   title = {Imaging of radiation-sensitive samples in transmission electron microscopes equipped with Zernike phase plates},
    13506   pages = {126-140},
    13507   journal = {Ultramicroscopy},
    13508   volume = {108},
    13509   author = {Malac, M. and Beleggia, M. and Egerton, R. and Zhu, Y.}
    13510 }
    13511 @article{Bron1999,
    13512   year = {1999},
    13513   title = {The 9 {\AA} projection structure of cytochrome $b_6f$ complex determined by electron crystallography},
    13514   pages = {117-126},
    13515   journal = {Journal of Molecular Biology},
    13516   volume = {287},
    13517   author = {Bron, P. and {Lacap\'ere}, J.-J. and Breyton, C. and Mosser, G.}
    13518 }
    13519 @inproceedings{Kothleitner2003a,
    13520   year = {2003},
    13521   title = {First Applications of Electron Energy-Loss Spectroscopy with High Energy Resolution},
    13522   booktitle = {Mat. Res. Soc. Symp. Proc.},
    13523   pages = {27-32},
    13524   volume = {738},
    13525   author = {Kothleitner, G. and Mitterbauer, C. and Grogger, W. and Zandbergen, H. and Tiemeijer, P.C. and Freitag, B. and Barfels, M. and Hofer, F.}
    13526 }
    13527 @article{Saxton1998,
    13528   year = {1998},
    13529   title = {Quantitative comparision of images and transforms},
    13530   pages = {52-60},
    13531   journal = {Journal of Microscopy},
    13532   volume = {1-2},
    13533   author = {Saxton, W.O.}
    13534 }
    13535 @article{Kothleitner1998,
    13536   number = {5},
    13537   year = {1998},
    13538   title = {Optimization of the Signal to Noise Ratio in {EFTEM} Elemental Maps with Regard to Different Eonization Edge Types},
    13539   pages = {349-357},
    13540   journal = {Micron},
    13541   volume = {29},
    13542   author = {Kothleitner, G. and Hofer, F.}
    13543 }
    13544 @article{Dwyer2007,
    13545   year = {2007},
    13546   title = {Electron nanodiffraction using sharply focused parallel probes},
    13547   pages = {151104},
    13548   journal = {Applied Physics Letters},
    13549   volume = {90},
    13550   author = {Dwyer, C. and Kirkland, A.I. and Hartel, P. and {M\"uller}, H. and Haider, M.}
    13551 }
    13552 @article{Dwyer2008,
    13553   year = {2008},
    13554   title = {Method to measure spatial coherence of subangstrom electron beams},
    13555   pages = {021115},
    13556   journal = {Applied Physics Letters},
    13557   volume = {93},
    13558   author = {Dwyer, C. and Erni, R. and Etheridge, J.}
    13559 }
    13560 @book{Reisner,
    13561   edition = {73},
    13562   year = {1989},
    13563   title = {An early history of the electron microsope in the united states},
    13564   note = {sold out, reprint 2006},
    13565   publisher = {Adavances in electronics and electron physics},
    13566   author = {Reisner, J.H.}
    13567 }
    13568 @article{Bottcher1995,
    13569   year = {1995},
    13570   title = {Electron cryo-micrsocopy of graphite in amorphous ice},
    13571   pages = {417-424},
    13572   journal = {Ultramicroscopy},
    13573   volume = {58},
    13574   author = {{B\"ottcher}, B.}
    13575 }
    13576 @article{Coene1992,
    13577   number = {26},
    13578   year = {1992},
    13579   title = {Phase retrieval through focus variation for ultra-resolution in field-emission transmission electron microscopy},
    13580   pages = {3743-3749},
    13581   journal = {Physical Review Letters},
    13582   volume = {69},
    13583   author = {Coene, W.M.J. and Jansen, G. and Beeck, M. op de and Dyck, D. van}
    13584 }
    13585 @article{Atsuzawa2009,
    13586   year = {2009},
    13587   title = {High-contrast imaging of plastic-embedded tissues by phase contrast electron microscopy},
    13588   pages = {35-45},
    13589   journal = {Journal of Electron Microscopy},
    13590   volume = {58},
    13591   author = {Atusuzawa, K. and et al.}
    13592 }
    13593 @article{Bailey2004,
    13594   year = {2004},
    13595   title = {Performance Evaluation of a Transmission Scintillator-Based Lens-Coupled 4K CCD Camera for Use in Low-Dose Electron Cryo-Microscopy},
    13596   pages = {S2},
    13597   journal = {Mircoscopy Mircoanal},
    13598   volume = {10},
    13599   author = {Bailey, B. and Agard, D.A. and Sedat, J.W. and Barfels, M. and Chao, H. and Mooney, P.E.}
    13600 }
    13601 @article{Muto2006,
    13602   number = {4},
    13603   year = {2006},
    13604   title = {Spectral restoration and energy resolution improvement of electron energy-loss spectra by Pixon reconstruction: {I. Principle} and test examples},
    13605   pages = {215-223},
    13606   journal = {Journal of Electron Microscopy},
    13607   volume = {55},
    13608   author = {Muto, S. and Pueter, R.C. and Tatsumi, K.}
    13609 }
    13610 @article{Alem2009,
    13611   year = {2009},
    13612   title = {Atomically thin hexagonal boron nitride probed by ultrahigh-resolution transmission electron microscopy},
    13613   pages = {155425},
    13614   journal = {Physics Review B},
    13615   volume = {80},
    13616   author = {Alem, N. and Erni, R. and Kisielowski, C. and Rosell, M.D. and Gannett, W. and Zettl, A.}
    13617 }
    13618 @article{Meyer2008a,
    13619   year = {2008},
    13620   title = {Direct Imaging of Lattice Atoms and Topological Defects in Graphene Membranes},
    13621   pages = {3582-3586},
    13622   journal = {Nano Letters},
    13623   volume = {8},
    13624   author = {Meyer, J.C. and Kisielowski, C. and Erni, R. and Rossell, M.D. and Crommie, M.F. and Zettl, A.}
    13625 }
    13626 @article{Ishizuka1980,
    13627   year = {1980},
    13628   title = {Contrast transfer of crystal images in {TEM}},
    13629   pages = {55-65},
    13630   journal = {Ultramicroscopy},
    13631   volume = {5},
    13632   author = {Ishizuka, K.}
    13633 }
    13634 @article{Jia2008,
    13635   year = {2008},
    13636   title = {Atomic-scale study of electric dipoles near charged and uncharged domain walls in ferroelectric films},
    13637   pages = {57-61},
    13638   journal = {Nature},
    13639   volume = {7},
    13640   author = {Jia, C.-L. and Mi, S.-B. and Urban, K. and Verjoiu, I. and Alexe, M. and Hesse, D.}
    13641 }
    13642 @article{Gonen2004,
    13643   year = {2004},
    13644   title = {Aquaporin-O membrane junctions reveal the structure of a closed water pore},
    13645   pages = {193-196},
    13646   journal = {Nature},
    13647   volume = {429},
    13648   author = {Gonen, T. and Sliz, P. and Kistler, J. and Cheng, Y. and Walz, T.}
    13649 }
    13650 @article{Jia2004,
    13651   year = {2004},
    13652   title = {High-Resolution Transmission Electron Microscopy Using Negative Spherical Aberration},
    13653   pages = {174-184},
    13654   journal = {Microscopy and Mircoanalysis},
    13655   volume = {10},
    13656   author = {Jia, C.-L. and Lentzen, M. and Urban, K.}
    13657 }
    13658 @article{Ishitani2002a,
    13659   number = {4},
    13660   year = {2003},
    13661   title = {A Method for Personal Expertise-Independent Evaluation of Image Resolution in Scanning Electron Microscopy},
    13662   pages = {191-203},
    13663   journal = {Scanning},
    13664   volume = {24},
    13665   author = {Ishitani, T. and Sato, M.}
    13666 }
    13667 @article{Oho2001,
    13668   number = {5},
    13669   year = {2001},
    13670   title = {Strategies for Optimum Use of Superposition Diffractogram in Scanning Electron Microscopy},
    13671   pages = {351-356},
    13672   journal = {Scanning},
    13673   volume = {23},
    13674   author = {Oho, E. and Toyomura, K.}
    13675 }
    13676 @article{Kazemian2006,
    13677   year = {2006},
    13678   title = {Quantitative secondary electron energy filtering in a scanning electron microscope and its applications},
    13679   pages = {140-150},
    13680   journal = {Ultramicroscopy},
    13681   volume = {107},
    13682   author = {Kazemian, P. and Mentink, S.A.M. and Rodenburg, C. and Humphreys, C.J.}
    13683 }
    13684 @article{Rau1996,
    13685   year = {1996},
    13686   title = {An Annular Toroidal Backscattered Electron Energy Analyser for Use in Scanning Electron Microscopy},
    13687   pages = {556-561},
    13688   journal = {Scanning},
    13689   volume = {18},
    13690   author = {Rau, E.I. and Robinson, V.N.E.}
    13691 }
    13692 @article{Bronsgeest2007,
    13693   number = {6},
    13694   year = {2007},
    13695   title = {Extracting the Boersch effect contribution from experimental energy spread measurements for Schottky electron emitters},
    13696   pages = {2049-254},
    13697   journal = {Journal of Vaccuum Science Technology B},
    13698   volume = {25},
    13699   author = {Bronsgeest, M.S. and barth, J.E. and Schwind, G.A. and Swanson, L.W. and Kruit, P.}
    13700 }
    13701 @article{Nellist1999,
    13702   year = {1999},
    13703   title = {Incoherent imaging using dynamically scattered coherent electrons},
    13704   pages = {111-124},
    13705   journal = {Ultramicroscopy},
    13706   volume = {78},
    13707   author = {Nellist, P.D. and Pennycook, S.J.}
    13708 }
    13709 @article{Nellist1998,
    13710   number = {19},
    13711   year = {1998},
    13712   title = {Subangstrom Resolution by Underfocused Incoherent Transmission Electron Microscopy},
    13713   pages = {4156-4159},
    13714   journal = {Physical Review Letters},
    13715   volume = {81},
    13716   author = {Nellist, P.D. and Pennycook, S.J.}
    13717 }
    13718 @article{Yonekura2006,
    13719   year = {2006},
    13720   title = {Electron energy filtering significantly improves amplitude contrast of frozen-hydrated protein at 300 kV},
    13721   pages = {524-536},
    13722   journal = {Journal of Structural Biology},
    13723   volume = {156},
    13724   author = {Yonekura, K. and Braunfeld, M.B. and Mari-Yonekura, S. and Agard, D.A.}
    13725 }
    13726 @article{Park2009,
    13727   year = {2009},
    13728   title = {4D ultra fast electron microscopy: Imaging of atomic motions, acoustic resonances, and moire fringe dynamics},
    13729   pages = {7-19},
    13730   journal = {Ultramicroscopy},
    13731   volume = {110},
    13732   author = {Park, H.S. and Baskin, J.S. and Barwick, B. and Kwon, O.H. and Zewail, A.H.}
    13733 }
    13734 @article{Bahn2008,
    13735   number = {6},
    13736   year = {2008},
    13737   title = {Range of validity of field emission equations},
    13738   pages = {2080-2084},
    13739   journal = {Journal of Vaccuum Science Technology B},
    13740   volume = {26},
    13741   author = {Bahn, A.S. and J.E. and Schwind, G.A. and Swanson}
    13742 }
    13743 @article{Beck2004,
    13744   year = {2004},
    13745   title = {Nuclear Pore Complex Structure and Dynamics Revealed by Cryoelectron Tomography},
    13746   pages = {1387-1390},
    13747   journal = {Science},
    13748   volume = {306},
    13749   author = {Beck, M. and {F\"orster}, F. and Ecke, M. and Plitzko, J.M. and Melchior, F. and Gerisch, G. and Baumeister, W. and Medalia, O.}
    13750 }
    13751 @article{Ban2000,
    13752   year = {2000},
    13753   title = {The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 {\AA} Resolution},
    13754   pages = {905-920},
    13755   journal = {Science},
    13756   volume = {289},
    13757   author = {Ban, N. and Nissen, P. and Hansen, J. and Moore, P.B. and Steitz, T.A.}
    13758 }
    13759 @article{Havelka1993,
    13760   year = {1993},
    13761   title = {Projection structure of Halorhodopsin from Halobacterium halobium at 6 {\AA} resolution obtrained by electron cryo-microscopy},
    13762   pages = {837-846},
    13763   journal = {Journal of Molecular Biology},
    13764   volume = {234},
    13765   author = {Havelka, W. A. and Henderson, R. and Heymann, J.A.W. and Oesterhelt, D.}
    13766 }
    13767 @article{Havelka1995,
    13768   year = {1995},
    13769   title = {Three-dimensional structure of halorhodopsin at 7 {\AA} resolution},
    13770   pages = {726-738},
    13771   journal = {Journal of Molecular Biology},
    13772   volume = {247},
    13773   author = {Havelka, W.A. and Henderson, R. and Oesterhelt, D.}
    13774 }
    13775 @article{Ruprecht2001,
    13776   year = {2001},
    13777   title = {Determining the structure of biological macromolecules by transmission electron microscopy, single particle analysis and 3D reconstruction},
    13778   pages = {121-164},
    13779   journal = {Biophysics and Molecular Biology},
    13780   volume = {75},
    13781   author = {Ruprecht, J. and Nield, J.}
    13782 }
    13783 @article{Pennycook2000,
    13784   year = {2000},
    13785   title = {Z-Contrast Imaging in an Aberration-Corrected Scanning Transmission Electron Microscope},
    13786   pages = {343},
    13787   journal = {Microscopy and Microanalysis},
    13788   volume = {6},
    13789   author = {Pennycook, S.J. and Rafferty, B. and Nellist, P.D.}
    13790 }
    13791 @inproceedings{Pennycook2003,
    13792   year = {2003},
    13793   title = {Quantum Mechanical Resolution Limits to Imaging and Spectroscopy in the Transmission Electron Microscope},
    13794   booktitle = {From the Atomic to the Nano Scale},
    13795   pages = {126},
    13796   editor = {McGuire, J.},
    13797   publisher = {Old Dominion Universtity},
    13798   author = {Pennycook, S.J. and Lupini, A.R. and Varela, M. and Borisevich, A. and Peng, Y. and Nellist, P.D.}
    13799 }
    13800 @article{Pennycook2009,
    13801   year = {2009},
    13802   title = {Aberration corrected scanning transmission electron microscopy: from atomic imaging and analysis to solving energy problems},
    13803   pages = {3709-3733},
    13804   journal = {Philosophical Transactions of the Royal Society},
    13805   volume = {367},
    13806   author = {Zach2009}
    13807 }
    13808 @article{Pennycook1990,
    13809   year = {1990},
    13810   title = {High-Resolution Incoherent Imaging of Crystals},
    13811   pages = {938},
    13812   journal = {Physical Review Letters},
    13813   volume = {64},
    13814   author = {Pennycook, S.J. and Jesson, D.E.}
    13815 }
    13816 @article{Muto2006a,
    13817   number = {4},
    13818   year = {2006},
    13819   title = {Spectral restoration and energy resolution improvement of electron energy-loss spectra by Pixon reconstruction: {II. Application} to practical {ELNES} analysis of low {SNR}},
    13820   pages = {225-230},
    13821   journal = {Journal of Electron Microscopy},
    13822   volume = {55},
    13823   author = {Muto, S. and Tatsumi, K. and Puetter, R.C. and Yosida, T. and Yamamoto, Y. and Sasano, Y.}
    13824 }
    13825 @article{Kujawa1990,
    13826   year = {1990},
    13827   title = {Second-rank aberrations of a magnetic imaging energy filter: measurement and correction},
    13828   pages = {39-46},
    13829   journal = {Optik},
    13830   volume = {86},
    13831   author = {Kujawa, S. and Krahl, D. and Niedrig, H. and Zeitler, E.}
    13832 }
    13833 @article{Kujawa1992,
    13834   year = {1992},
    13835   title = {Performance of a low-noise CCD camera adapted to a transmission electron microscope},
    13836   pages = {395-403},
    13837   journal = {Ultramicrosopy},
    13838   volume = {46},
    13839   author = {Kujawa, S. and Krahl, D.}
    13840 }
    13841 @article{Lugg2010,
    13842   year = {2010},
    13843   title = {Energy-filtered transmission electron microscopy based on inner-shell ionization},
    13844   journal = {Ultramicroscopy},
    13845   author = {Lugg, N.R. and Freitag, B. and Findlay, S.D. and Allen, L.J..}
    13846 }
    13847 @article{Avoort2005,
    13848   number = {12},
    13849   year = {2005},
    13850   title = {Aberration retrieval from the intensity point-spread function in the focal region using the extended {Nijboer-Zernike} approach},
    13851   pages = {1695-1728},
    13852   journal = {Journal of Modern Optics},
    13853   volume = {52},
    13854   author = {Avoort, C. van der and Braat, J.J.M. and Dirksen, P. and Janssen, A.J.E.M.}
    13855 }
    13856 @article{Eastham2009,
    13857   year = {2009},
    13858   title = {A design for a subminiature, low energy scanning electron microscope with atomic resolution},
    13859   pages = {014702},
    13860   journal = {Journal of Appplied Physics},
    13861   volume = {105},
    13862   author = {Eastham, D.A. and Edmondson, P. and Greene, S. and Donnelly, S. and Olsson, E. and Svensson, K. and Bleloch, A.}
    13863 }
    13864 @article{Schonhense2002,
    13865   number = {6},
    13866   year = {2002},
    13867   title = {Correction of chromatic and spherical aberration in electron microscopy utilizing the time structure of pulsed excitation sources},
    13868   pages = {2526-2534},
    13869   journal = {Journal of Vacuum Science Technology B},
    13870   volume = {20},
    13871   author = {{Sch\"onhense}, G. and Spiecker, H.}
    13872 }
    13873 @article{Sawada2005,
    13874   number = {2},
    13875   year = {2005},
    13876   title = {Experimental evaluation of a spherical aberration-corrected {TEM} and {STEM}},
    13877   pages = {119-121},
    13878   journal = {Journal of Electron Microscopy},
    13879   volume = {54},
    13880   author = {Sawada, H. and Tomita, T. and Naruse, M. and Honda, T. and Hambridge, P. and Hartel, P. and Haider, M. and Hetherington, C. and Doole, R. and Kirkland, A. and Hutchison, J. and Titchmarsh, J. and Cockayne, D.}
    13881 }
    13882 @article{Hartel1996,
    13883   year = {1996},
    13884   title = {Conditions and reasons for incoherent imaging in {STEM}},
    13885   pages = {93-114},
    13886   journal = {Ultramicroscopy},
    13887   volume = {63},
    13888   author = {Hartel, P. and Rose, H. and Dinges, C.}
    13889 }
    13890 @article{Egelman2007,
    13891   year = {2007},
    13892   title = {The iterative helical real space reconstruction method: Surmounting the problems posed by real polymers},
    13893   pages = {83-94},
    13894   journal = {Journal of Strcutural Biology},
    13895   volume = {157},
    13896   author = {Egelman, E.H.}
    13897 }
    13898 @article{Sawada2009,
    13899   year = {2009},
    13900   title = {Correction of higher order geometrical aberration by triple 3-fold astigmatism field},
    13901   pages = {1-7},
    13902   journal = {Journal of electron microscopy},
    13903   author = {Sawada, H. and Sasaki, T. and Hosokawa, F. and Yuasa, S. and Terao, M. and Kawazoe, M .and Nakamichi, T. and Kaneyama, T. and Kondo, Y. and Kimoto, K. and Suenada, K.}
    13904 }
    13905 @article{Sawada2008,
    13906   year = {2008},
    13907   title = {Measurement method of aberration from Ronchigram by autocorrelation function},
    13908   pages = {1467-1475},
    13909   journal = {Ultramicroscopy},
    13910   volume = {108},
    13911   author = {Sawada, H. and Sannomiya, T. and Hosokawa, F. and Nakamichi, T. and Kaneyama, T. and Tomita, T. and Kondo, Y. and Tanaka, T. and Oshima, Y. and Tanishiro, Y. and Takayanagi, K.}
    13912 }
    13913 @article{Erni2005a,
    13914   year = {2005},
    13915   title = {Valence electron energy-loss spectroscopy in monochromated scanning transmission electron microscopy},
    13916   pages = {176-192},
    13917   journal = {Ultramicroscopy},
    13918   volume = {104},
    13919   author = {Erni, R. and Browning, N.D.}
    13920 }
    13921 @article{Gilbert1972,
    13922   number = {1},
    13923   year = {1972},
    13924   title = {Iterative Methods for the three-dimensional reconstruction of a object from projections},
    13925   pages = {105-117},
    13926   journal = {Journal of Theoretical Biology},
    13927   volume = {36},
    13928   author = {Gilbert, P.}
    13929 }
    13930 @article{Shiue2009,
    13931   year = {2009},
    13932   title = {Phase TEM for biological imaging utilizing a Boersch electrostatic phase plate: theory and practice},
    13933   pages = {135-145},
    13934   journal = {Journal of Electron Microscopy},
    13935   volume = {58},
    13936   author = {Shiue, J. and et al.}
    13937 }
    13938 @techreport{Zande2005,
    13939   number = {PR-TN-2005/00002},
    13940   year = {2005},
    13941   title = {Local magnification in Ronchigrams (Aberration retrieval in {STEM})},
    13942   type = {Technical Note},
    13943   address = { Eindhoven, The Netherlands},
    13944   institution = {Philips Research},
    13945   author = {Zande, M.J. van der and Kok, C.}
    13946 }
    13947 @article{Rafferty1998,
    13948   number = {16},
    13949   year = {1998},
    13950   title = {Direct and indirect transitions in the region of the band gap using electron-energy-loss spectroscopy},
    13951   pages = {10326-10337},
    13952   journal = {Physical Review B},
    13953   volume = {58},
    13954   author = {Rafferty, B. and Brown, L.M.}
    13955 }
    13956 @article{Lichte1986,
    13957   year = {1986},
    13958   title = {Electron Holography approaching atomic resolution},
    13959   pages = {293-304},
    13960   journal = {Ultramicroscopy},
    13961   volume = {20},
    13962   author = {Lichte, H.}
    13963 }
    13964 @article{Bosman2009,
    13965   year = {2009},
    13966   title = {Nanoscale band gap spectroscopy on ZnO and GaN-based compounds with a monochromated electron microscope},
    13967   pages = {101110},
    13968   journal = {Applied Physics Letters},
    13969   volume = {95},
    13970   author = {Bosman, M. and Tang, L.J. and Ye, J.D. and Zhang, Y. and Keast, V.J.}
    13971 }
    13972 @article{Conway1999,
    13973   year = {1999},
    13974   title = {Methods for Reconstructing Density Maps of Single Particles from Cryoelectron Micrographs to Subnanometer Resolution},
    13975   pages = {106-118},
    13976   journal = {Journal of Strcutural Biology},
    13977   volume = {128},
    13978   author = {Conway, J.F. and Steven, A.C.}
    13979 }
    13980 @article{Muller2008a,
    13981   year = {2008},
    13982   title = {Aberration-corrected optics: from an idea to a device},
    13983   pages = {167-178},
    13984   journal = {Physcis Procedia},
    13985   volume = {1},
    13986   author = {Muller, H. and Uhlemann, S. and Hartel, P. and Haider, M.}
    13987 }
    13988 @article{Chiu1977,
    13989   year = {1977},
    13990   title = {Factors affecting high resolution fixed-beam transmission electron microscopy},
    13991   pages = {207-217},
    13992   journal = {Ultramicroscopy},
    13993   volume = {2},
    13994   author = {Chiu, W. and Glaeser, R.M.}
    13995 }
    13996 @article{HitatchiSEM2007,
    13997   number = {3},
    13998   year = {2007},
    13999   title = {{STEM} Imaging of Lattic Fringes and beyond in a {UHR} In-Lens Field-Emission {SEM}},
    14000   pages = {12-16},
    14001   journal = {Microscopy Today},
    14002   author = {Ngo, V. van and Hernandez, M. and Roth, B. and Joy, D.C.}
    14003 }
    14004 @article{Schatz1997,
    14005   year = {1997},
    14006   title = {Angular reconstitution in three-dimensional electron microscopy: practical and technical aspects},
    14007   pages = {179-193},
    14008   journal = {Scanning Microscopy},
    14009   volume = {11},
    14010   author = {Schatz, M. and Orlova, E.V. and Harauz, G. and Stark, H. and Dube, P. and Zemlin, F. and Heel, M. van}
    14011 }
    14012 @article{Isabell2009,
    14013   year = {2009},
    14014   title = {Development of a 200kV Atomic resolution Analytical Electron Microscope},
    14015   pages = {8-10},
    14016   journal = {Microscopy Today},
    14017   author = {Isabell, T. and Brink, J. and Kawasaki, M. and Armbruster, B. and Ishikawa, I. and Okunishi, E. and Sawada, H. and Okura, Y. and Yamazaki, K. and Ishikawa, T. and Kawazu, M. and Hori, M. and Terao, M. and Kanno, M. and Tanba, S. and Kondo, Y.}
    14018 }
    14019 @article{Penczek2002a,
    14020   year = {2002},
    14021   title = {Resolution Measures in Single Particle Analysis},
    14022   author = {Penczek, P.A.}
    14023 }
    14024 @article{Majorovits2007,
    14025   year = {2007},
    14026   title = {Optimizing phase contrast in transmission electron microscopy with an electrostatic (Boersch) phase plate},
    14027   pages = {213-226},
    14028   journal = {Ultramicroscopy},
    14029   volume = {107},
    14030   author = {Majorovits, E. and Barton, B. and {Schulthei\ss}, K. and Perez-Willard, F. and Gerthsen, D. and {Schr\"oder}, R.R.}
    14031 }
    14032 @article{Baumeister2004,
    14033   year = {2004},
    14034   title = {Mapping molecular landscapes inside cells},
    14035   pages = {865-872},
    14036   journal = {Biological Chemistry},
    14037   volume = {385},
    14038   author = {Baumeister, W.}
    14039 }
    14040 @article{Harrach1995,
    14041   year = {1995},
    14042   title = {Instrumental factors in high-resolution {FEG STEM}},
    14043   pages = {1-5},
    14044   journal = {Ultramicroscopy},
    14045   volume = {58},
    14046   author = {Harrach, H.S. von}
    14047 }
    14048 @article{Baxter2007,
    14049   year = {2007},
    14050   title = {SPIRE: The SPIDER Reconstruction Engine},
    14051   pages = {56-63},
    14052   journal = {Journal of Strcutural Biology},
    14053   volume = {157},
    14054   author = {Baxter, W.T. and Leith, A. and Frank, J.}
    14055 }
    14056 @article{Rafferty2001,
    14057   number = {3},
    14058   year = {2001},
    14059   title = {On the origin of transverse incoherence in {Z-}constrast {STEM}},
    14060   pages = {227-233},
    14061   journal = {Journal of Electron Microscopy},
    14062   volume = {50},
    14063   author = {Rafferty, B. and Nellist, P.D. and Pennycook, S.J.}
    14064 }
    14065 @article{Drummy2004,
    14066   year = {2004},
    14067   title = {Low-voltage electron microscopy of polymer and organic molecular thin films},
    14068   pages = {247-256},
    14069   journal = {Ultramicroscopy},
    14070   volume = {99},
    14071   author = {Drummy, L.F. and Yang, J. and Martin, D.C.}
    14072 }
    14073 @article{Jiang2006,
    14074   year = {2006},
    14075   title = {Experimental and theoretical improvements on understanding of the {O K-edge} of {TeO}$_2$},
    14076   pages = {123-129},
    14077   journal = {Ultramicroscopy},
    14078   volume = {106},
    14079   author = {Jiang, N. and Jiang, B. and Erni, R. and Browning, N.D. and Spence, J.C.H.}
    14080 }
    14081 @article{Jiang2005,
    14082   year = {2003},
    14083   title = {Applications of a bilateral denoising filter in biological electron microscopy},
    14084   pages = {114-122},
    14085   journal = {Journal of Structural Biology},
    14086   volume = {144},
    14087   author = {Jiang, W. and Baker, M.L. and Wu, Q. and Bajaj, C. and Chiu, W.}
    14088 }
    14089 @article{Jiang2008,
    14090   year = {2008},
    14091   title = {Spatial control over atomic layer deposition using microcontact-printed resists},
    14092   pages = {8799-8807},
    14093   journal = {Surface & Coatings Technology},
    14094   volume = {201},
    14095   author = {Jiang, X. and chen, R. and Bent, S.F.}
    14096 }
    14097 @article{Chen2007,
    14098   year = {2007},
    14099   title = {A dose-rate effect in single-particle electron microscopy},
    14100   pages = {92-100},
    14101   journal = {Journal of Structural Biology},
    14102   volume = {161},
    14103   author = {Chen, J.Z. and Sachse, C. and Xu, C. and Mielke, T. and Spahn, C.M.T. and Grigorieff, N.}
    14104 }
    14105 @article{Alloyeau2010,
    14106   year = {2010},
    14107   title = {Imaging of soft and hard materials using a Boersch phase plate in a transmission electron microscope},
    14108   pages = {563-570},
    14109   journal = {Ultramicroscopy},
    14110   volume = {110},
    14111   author = {Alloyeau, D. and Hsieh, W.K. and Anderson, E.H. and Hilken, L. and Benner, G. and Meng, X. and Chen, F.R. and Kisielowski, C.}
    14112 }
    14113 @article{Heel2005,
    14114   year = {2005},
    14115   title = {Fourier shell correlation threshold criteria},
    14116   pages = {250-262},
    14117   journal = {Journal of Structural Biology},
    14118   volume = {151},
    14119   author = {Heel, M. van and Schatz, M.}
    14120 }
    14121 @article{Heel2000,
    14122   number = {4},
    14123   year = {2000},
    14124   title = {Single-particle electron cryo-microscopy: towards atomic resolution},
    14125   pages = {307-369},
    14126   journal = {Quarterly Review of Biophysics},
    14127   volume = {33},
    14128   author = {Heel, M. van and Gowen, B. and Matadeen, R. and Orlova, E.V. and Finn, R. and Pape, T. and Cohen, D. and Stark, H. and Schmidt, R. and Schatz, M. and Patwardhan, A.}
    14129 }
    14130 @article{Walther2006a,
    14131   year = {2006},
    14132   title = {Preliminary Results from the First Monochromated and Aberration Corrected 200-kV Field-Emission Scanning Transmission Electron Microscope},
    14133   pages = {498-505},
    14134   journal = {Microscopy and Microanalysis},
    14135   volume = {12},
    14136   author = {Walther, T. and Stegmann, H.}
    14137 }
    14138 @article{Yamaguchi2009,
    14139   year = {2009},
    14140   title = {Smart specimen preparation for freeze substitution and serial ultrathin sectioning of yeast cells},
    14141   pages = {261-266},
    14142   journal = {Journal of Electron Microscopy},
    14143   volume = {58},
    14144   author = {Yamaguchi, M. and Okada, H. and Namiki, Y.}
    14145 }
    14146 @article{Sparrow1916,
    14147   year = {1916},
    14148   title = {On spectroscopic resolving power},
    14149   pages = {76-86},
    14150   journal = {Astrophysical Journal},
    14151   volume = {44},
    14152   author = {Sparrow, C.M.}
    14153 }
    14154 @article{Rose1984,
    14155   year = {1984},
    14156   title = {Information transfer in transmission electron microscopy},
    14157   pages = {173-192},
    14158   journal = {Ultramicroscopy},
    14159   volume = {15},
    14160   author = {Rose, H.}
    14161 }
    14162 @article{Martinez2008,
    14163   year = {2008},
    14164   title = {The use of multipole fields for aberration correctionin pi/2 Wien filters},
    14165   pages = {193-198},
    14166   journal = {Physics Procedia},
    14167   volume = {1},
    14168   author = {Martinez, G. and Tsuno, K.}
    14169 }
    14170 @article{Driel2009,
    14171   year = {2009},
    14172   title = {Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells},
    14173   pages = {669-684},
    14174   journal = {European Journal of Cell Biology},
    14175   volume = {88},
    14176   author = {Driel, L.F. van and Valentijn, J.A. and Valentijn, K.M. and Koning, R.I. and Koster, A.J.}
    14177 }
    14178 @article{Pomfret2007,
    14179   year = {2007},
    14180   title = {Application of the iterative helical real-space reconstruction method to large membranous tubular crystals of P-type ATPases},
    14181   pages = {106-116},
    14182   journal = {Journal of Strcutural Biology},
    14183   volume = {157},
    14184   author = {Pomfret, A.J. and Rice, W.J. and Stokes, D.L.}
    14185 }
    14186 @article{Beek1996,
    14187   year = {1996},
    14188   title = {Wave function reconstruction in {HRTEM}: the parabola method},
    14189   pages = {167-183},
    14190   journal = {Ultramicroscopy},
    14191   volume = {64},
    14192   author = {Beek, M. op de and Dyck, D. van and Coene, W.}
    14193 }
    14194 @article{Lichte2008,
    14195   year = {2007},
    14196   title = {Performance limits of electron holography},
    14197   pages = {256-262},
    14198   journal = {Ultramicroscopy},
    14199   volume = {108},
    14200   author = {Lichte, H.}
    14201 }
    14202 @article{Hue2005,
    14203   year = {2005},
    14204   title = {Calibration of Projector Lens Distortions for Quantitative High-Resolution TEM},
    14205   pages = {552-553},
    14206   journal = {Microsc Microanal},
    14207   volume = {11 (Suppl 2)},
    14208   author = {Hue, F. and Johnson, C.L. and Lartigue-Korinek, S. and Wang, G. and Buseck, P.R. and Hytch, M.J.}
    14209 }
    14210 @article{Kaiser2002,
    14211   year = {2002},
    14212   title = {Direct observation of defect-mediated cluster nucleation},
    14213   pages = {102-106},
    14214   journal = {Nature materials},
    14215   volume = {1},
    14216   author = {Kaise, U. and Muller, D.A. and Grazul, J.L. and Chuvilin, A. and Kawasaki, M.}
    14217 }
    14218 @article{Turchanin2009,
    14219   year = {2009},
    14220   title = {One Nanometer Thin Carbon Nanosheets with Tunable Conductivity and Stiffness},
    14221   pages = {1233-1237},
    14222   journal = {Advanced Materials},
    14223   volume = {21},
    14224   author = {Turchanin, A. and Beyer, A. and Nottbohm, T. and Zhang, X. and Stosch, R. and and Sologubenko, A.S. and Mayer, J. and Hinze, P. and Weimann, T. and {G\"olzh\"auser}}
    14225 }
    14226 @article{Mkhoyan2006,
    14227   year = {2006},
    14228   title = {Direct Determination of Local Lattice Polarity in Crystals},
    14229   pages = {1354},
    14230   journal = {Science},
    14231   volume = {312},
    14232   author = {Mkhoyan, K.A. and Batson, P.E. and Cha, J. and Schaff, W.J. and Silcox, J.}
    14233 }
    14234 @inproceedings{Sawada2006,
    14235   title = {Method to Measure Aberrations from Ronchigram by Auto-Correlation Function},
    14236   journal = {Journal of Electron Microscopy},
    14237   volume = {IMC 16},
    14238   address = {Sapporo, Japan},
    14239   author = {Sawada, H. and Sannomiya, T. and Hosokawa, F. and Kaneyama, T. and Kondo, Y. and Tanishiro, Y. and Takayanagi, K.}
    14240 }
    14241 @article{Allen2003,
    14242   year = {2003},
    14243   title = {Atomic Resolution Electron Energy Loss Spectroscopy Imaging in Aberration Corrected Scanning Transmission Electron Microscopy},
    14244   pages = {105503},
    14245   journal = {Physical Review Letters},
    14246   volume = {91},
    14247   author = {Allen, L.J. and Findlay, S.D. and Lupini, A.R. and Oxley, M.P. and Pennycook, S.J.}
    14248 }
    14249 @article{Erni2010,
    14250   year = {2010},
    14251   title = {Optimizationofexit-planewavesrestoredfromHRTEMthrough-focalseries},
    14252   pages = {151-161},
    14253   journal = {Ultramicroscopy},
    14254   volume = {110},
    14255   author = {Erni, R. and Rossell, M.D. and Nakashima, P.N.H.}
    14256 }
    14257 @article{Meyer1998,
    14258   year = {1998},
    14259   title = {The effects of electron and photon scattering on signal and noise transfer properties of scintillators in CCD cameras used for electron detection},
    14260   pages = {23-33},
    14261   journal = {Ultramicroscopy},
    14262   volume = {75},
    14263   author = {Meyer, R.R. and Krikland, A.I.}
    14264 }
    14265 @article{Lencova2008,
    14266   year = {2008},
    14267   title = {A pitfall in the calculation of higher order aberrations},
    14268   pages = {737-740},
    14269   journal = {Ultramicroscopy},
    14270   volume = {108},
    14271   author = {Lencova, B. and Lenc, M. and Hawkes, P.W.}
    14272 }
    14273 @article{Browning1996,
    14274   year = {1996},
    14275   title = {Direct Experimental Determination of the Atomic Structure at Internal Interfaces},
    14276   pages = {1779},
    14277   journal = {Journal of Physics D},
    14278   volume = {29},
    14279   author = {Browning, N.D. and Pennycook, S.J.}
    14280 }
    14281 @article{Fellmann2002,
    14282   year = {2002},
    14283   title = {A relational database for {cryoEM}: experience at one year and 50000 images},
    14284   pages = {273-282},
    14285   journal = {Journal of Structural Biology},
    14286   volume = {137},
    14287   author = {Fellmann, D. and Pulokas, J. and MIlligan, R.A. and Carragher, B. and Potter, C.S.}
    14288 }
    14289 @article{Mueller2007,
    14290   number = {11},
    14291   year = {2006},
    14292   title = {Biological Scanning Transmission Electron Microscopy: Imaging and Single Molecule Mass Determination},
    14293   pages = {749-752},
    14294   journal = {Chimia},
    14295   volume = {60},
    14296   author = {{M\"uller}, S.A. and Engel, A.}
    14297 }
    14298 @article{Rhinow2008,
    14299   year = {2008},
    14300   title = {Electron cryo-microscopy of biological specimens on conductive titanium-silicon metal glass films},
    14301   pages = {698-705},
    14302   journal = {Ultramicroscopy},
    14303   volume = {108},
    14304   author = {Rhinow, D. and Kuhlbrandt, W.}
    14305 }
    14306 @article{Nomaguchi2004,
    14307   year = {2004},
    14308   title = {Separation of linear and non-linear imaging components in high-resolution transmission electron microscope images},
    14309   pages = {403-406},
    14310   journal = {Journal of Electron Microscopy},
    14311   volume = {53},
    14312   author = {Nomaguchi, T. and Kawasaki, T. and Kimura, Y. and Takai, Y.}
    14313 }
    14314 @article{Browning1997,
    14315   year = {1997},
    14316   title = {{EELS} in the {STEM}: Determination of Materials Properties on the Atomic Scale},
    14317   pages = {333},
    14318   journal = {Micron},
    14319   volume = {28},
    14320   author = {Browning, N.D. and Wallis, D.J. and Nllist, P.D. and Pennycook, S.J.}
    14321 }
    14322 @article{Gipson2007,
    14323   year = {2007},
    14324   title = {2dx - User-friendly image processing for 2D crystals},
    14325   pages = {64-72},
    14326   journal = {Journal of Strcutural Biology},
    14327   volume = {157},
    14328   author = {Gipson, B. and Zeng, X. and Zhang, Z.Y. and Stahlberg, H.}
    14329 }
    14330 @article{Oho1997,
    14331   number = {7},
    14332   year = {1997},
    14333   title = {New Generation Scanning Electron Microscopy Technology Based on the Concept of Active Image Processing},
    14334   pages = {483-488},
    14335   journal = {Scanning},
    14336   volume = {19},
    14337   author = {Oho, E. and Hoshino, Y. and Ogashiwa, T.}
    14338 }
    14339 @article{Penczek2002,
    14340   year = {2002},
    14341   title = {Three-dimensional spectral signal-to-noise ratio for a class of reconstruction algorithms},
    14342   pages = {34-46},
    14343   journal = {Journal of Structural Biology},
    14344   volume = {138},
    14345   author = {Penczek, P.A.}
    14346 }
    14347 @article{Gu2003,
    14348   number = {23},
    14349   year = {2003},
    14350   title = {3D electron microscopy reveals the variables deposition and protein dynamics of the peripheral pyruvate dehydrogenase component about the core},
    14351   pages = {7015-7020},
    14352   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    14353   volume = {100},
    14354   author = {Gu, Y. and Zhou, Z.H. and McCarthy, D.B. and Reed, L.J. and Stoops, J.K.}
    14355 }
    14356 @article{Bouwer2004,
    14357   year = {2004},
    14358   title = {Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement},
    14359   pages = {297-306},
    14360   journal = {Journal of Structural Biology},
    14361   volume = {148},
    14362   author = {Bouwer, J.C. and Mackey, M.R.and Lawrence, A. and Deerinck, T.J. and Jones, Y.Z. and Terada, M. and Martone, M.E. and Peltier, S. and Ellisman, M.H.}
    14363 }
    14364 @article{Hell2007,
    14365   year = {2007},
    14366   title = {Far-Field Optical Nanoscopy},
    14367   pages = {1153-1158},
    14368   journal = {Science},
    14369   volume = {316},
    14370   author = {Hell, S.W.}
    14371 }
    14372 @techreport{Bosch2004,
    14373   number = {PR-TN-2004/00364},
    14374   year = {2004},
    14375   title = {The use of mutual information in image registration},
    14376   type = {Technical Note},
    14377   address = { Eindhoven, The Netherlands},
    14378   institution = {Philips Research},
    14379   author = {Bosch, E.G.T.}
    14380 }
    14381 @article{Kunji2001,
    14382   year = {2001},
    14383   title = {Electron Crystallographic Analysis of Two-Twodimensional Crystals of Sensory Rhodopsin II:A 6.9 {\AA} Projection Structure},
    14384   pages = {279-293},
    14385   journal = {Journal of Molecular Biology},
    14386   volume = {308},
    14387   author = {Kunji, E.R.S. and Spudich, E.N. and Grisshammer, R. and Henderson, R. and Spudich, J.L.}
    14388 }
    14389 @article{Reichenbach1991,
    14390   year = {1991},
    14391   title = {Characterizing digital image acquisition devices},
    14392   pages = {170-177},
    14393   journal = {Optical Engineering},
    14394   volume = {30},
    14395   author = {Reichenbach, S.E. and Park, S.K. and Narayanswamy, R.}
    14396 }
    14397 @article{Bos1993,
    14398   year = {1993},
    14399   title = {Resolvability of the parameters of multiexponentials and other sum models},
    14400   pages = {313-322},
    14401   journal = {IEEE Transactions of Signal Processing},
    14402   volume = {41},
    14403   author = {Bos, A. van den and Swarte, J.H.}
    14404 }
    14405 @article{Gu2007,
    14406   year = {2007},
    14407   title = {Band-gap measurements of direct and indirect semiconductors using monochromated electrons},
    14408   pages = {195214},
    14409   journal = {Physical Review B},
    14410   volume = {75},
    14411   author = {Gu, L. and Srot, V. and Sigle, W. and Koch, C. and Aken, P. van and Scholz, F. and Thapa, S.B. and Kirchner, C. and Jetter, M. and Ruehle, M.}
    14412 }
    14413 @article{Kisielowski2008,
    14414   year = {2008},
    14415   title = {Detection of Single Atoms and Buried Defects in Three Dimensions by Aberration-Corrected Electron Microscope with 0.5-AA Information Limit},
    14416   pages = {469-477},
    14417   journal = {Microscopy and Microanalysis},
    14418   volume = {14},
    14419   author = {Kisielowski, C.}
    14420 }
    14421 @article{Nellist2006,
    14422   year = {2006},
    14423   title = {Confocal operation of a transmission electron microscope with two aberration correctors},
    14424   pages = {124105},
    14425   journal = {Applied Physics Letters},
    14426   volume = {89},
    14427   author = {Nellist, P.D. and behan, G. and Kirkland, A.I. and Hetherington, C.J.D.}
    14428 }
    14429 @article{Scheres2005,
    14430   year = {2005},
    14431   title = {Fast maximum-likelihood refinement of electron microscopy images},
    14432   pages = {ii243-ii244},
    14433   journal = {Bioinfomatics},
    14434   volume = {21 S2},
    14435   author = {Scheres, S.H.W. and Valle, M. and Carazo, J.-M.}
    14436 }
    14437 @article{Girit2009,
    14438   year = {2009},
    14439   title = {Graphene at the Edge: Stability and Dynamics},
    14440   pages = {1705-1707},
    14441   journal = {Science},
    14442   volume = {323},
    14443   author = {Girit, C.O. and Meyer, J.C. and Erni, R.and Rossel, M.D. and Kisielowski, C. and Yang, Li. and Park, C.-H. and Crommie, M.F. and Cohen, M.L. and Louie, S.G. and Zettl, A.}
    14444 }
    14445 @article{Yamazaki2005,
    14446   year = {2005},
    14447   title = {Precise measurement of third-order spherical aberration using low-order zone-axis {Ronchigrams}},
    14448   note = {in press},
    14449   journal = {Ultramicroscopy},
    14450   author = {Yamazaki, T. and Kotaka, Y. and Kikuchi, Y. and Watanabe, K.}
    14451 }
    14452 @article{Ronchi1964,
    14453   number = {4},
    14454   year = {1964},
    14455   title = {Forty years of history of a grating interferometer},
    14456   pages = {437-452},
    14457   journal = {Applied Optics},
    14458   volume = {3},
    14459   author = {Ronchi, V.}
    14460 }
    14461 @article{Lorusso2003,
    14462   number = {4},
    14463   year = {2003},
    14464   title = {Experimental Resolution Measurement in Critical Dimension Scanning Electron Microscope Metrology},
    14465   pages = {175-180},
    14466   journal = {Scanning},
    14467   volume = {25},
    14468   author = {Lorusso, G.F. and Joy, D.C.}
    14469 }
    14470 @article{Yin2003,
    14471   year = {2003},
    14472   title = {A statistical approach to computer processing of cryo-electron microscope images: virion classification and {3-D} reconstruction},
    14473   pages = {24-50},
    14474   journal = {Journal of Structural Biology},
    14475   volume = {144},
    14476   author = {Yin, Z. and Zheng, Y. and Doerschuk, P.C. and Nararajan, P. and Johnson, J.E.}
    14477 }
    14478 @article{Bammes2009,
    14479   year = {2009},
    14480   title = {Radiation damage effects at four specimen temperatures from 4 K to 100 K},
    14481   journal = {Journal of Structural Biology},
    14482   author = {Bammes, B.E. and Jakana, J. and Schmid, M.F. and Chiu, W.}
    14483 }
    14484 @article{Shao1988,
    14485   number = {11},
    14486   year = {1988},
    14487   title = {On the fifth order aberration in a sextupole corrected probe forming system},
    14488   pages = {2428-2437},
    14489   journal = {Rev. Sci. Instrum.},
    14490   volume = {59},
    14491   author = {Shao, Z.}
    14492 }
    14493 @article{Haas1999,
    14494   year = {1999},
    14495   title = {A Symmetry Mismatch at the Site of {RNA} Packaging in the Polymerase Complex of {dsRNA} Bacteriophage $\phi$6},
    14496   pages = {357-372},
    14497   journal = {Journal of Molecular Biology},
    14498   volume = {294},
    14499   author = {Haas, F. de and Paatero, A.O. and Mindich, L. and Bamford, D.H. and Fuller, S.D.}
    14500 }
    14501 @article{Glaeser2004,
    14502   year = {2004},
    14503   title = {Specimen charging on thin films with one conducting layer: discussion of physical principles},
    14504   pages = {790-796},
    14505   journal = {Microscopy and Microanalysis},
    14506   volume = {10},
    14507   author = {Glaeser, R.M. and Downing, K.H.}
    14508 }
    14509 @article{Takai2006,
    14510   year = {2006},
    14511   title = {Molecular-scale imaging of unstained deoxyribonucleic acid fibers by phase transmission electron microscopy},
    14512   pages = {133903},
    14513   journal = {Applied Physics Letters},
    14514   volume = {89},
    14515   author = {Takai, Y. and Nomaguchi, T. and Matsushita, S. and Kimura, Y.}
    14516 }
    14517 @article{Gabashvili2000,
    14518   year = {2000},
    14519   title = {Solution Structure of the {E. coli} {70S} Ribosome at 11.5{\AA} Resolution},
    14520   pages = {537-549},
    14521   journal = {Cell},
    14522   volume = {100},
    14523   author = {Gabashvili, I.S. and Agrawal, R.K. and Spahn, C.M.T. and Gracssucci, R.A. and Svergun, D.I. and Frank, J. and Penczek, P.}
    14524 }
    14525 @article{Kabius2009,
    14526   year = {2009},
    14527   title = {First application of Cc-corrected imaging for high-resolution and energy-filtered TEM},
    14528   pages = {1-9},
    14529   journal = {Journal Of Electron Microscopy},
    14530   volume = {1},
    14531   author = {Kabius, B. and Hartel, P. and Haider, M. and {M\"uller}, H. and Uhlemann, S. and Loebau, U. and Zach, J. and Rose, H.}
    14532 }
    14533 @article{Rose1977,
    14534   year = {1977},
    14535   title = {Nonstandard imaging methods in electron microscopy},
    14536   pages = {251-267},
    14537   journal = {Ultramicroscopy},
    14538   volume = {2},
    14539   author = {Rose, H.}
    14540 }
    14541 @article{HohmannMarriott2009_SI,
    14542   number = {10},
    14543   year = {2009},
    14544   title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography},
    14545   pages = {729-732},
    14546   note = {Supplementary Information},
    14547   journal = {Nature Methods},
    14548   volume = {6},
    14549   author = {Hohmann-Marriott, M.F. and Sousa, A.A. and Azari, A.A. and Glushakova, S. and Zhang, G. and Zimmerberg, J. and Leapmann, R.D.}
    14550 }
    14551 @article{Zhu2009,
    14552   year = {2009},
    14553   title = {Imaging single atoms using secondary electrons with an aberration-corrected electron microscope},
    14554   pages = {808-811},
    14555   journal = {Nature Methods},
    14556   volume = {8},
    14557   author = {Zhu, Y. and Inada, H. and Nakamura, K. and Wall, J.}
    14558 }
    14559 @article{Pennycook1988,
    14560   year = {1988},
    14561   title = {Chemically Sensitive Structure Imaging with a Scanning Transmission Electron Microscope},
    14562   pages = {565},
    14563   journal = {Nature},
    14564   volume = {336},
    14565   author = {Pennycook, S.J. and Boatner, L.A.}
    14566 }
    14567 @article{Lehmann1999,
    14568   year = {1999},
    14569   title = {Electron Holography at atomic dimensions - present state},
    14570   pages = {249-263},
    14571   journal = {Materials Characterization},
    14572   volume = {42},
    14573   author = {Lehmann, M. and Lichte, H. and Geiger, D. and Lang, G. and Schweda, E.}
    14574 }
    14575 @article{Zuo2003,
    14576   year = {2003},
    14577   title = {Atomic Resolution Imaging of a Carbon Nanotube from Diffraction Intensities},
    14578   pages = {1419-1421},
    14579   journal = {Science},
    14580   volume = {300},
    14581   author = {Zuo, J.M. and Vartanyants, I. and Gao, M. and Zhang, R. and Nagahara, L.A.}
    14582 }
    14583 @article{Sousa2009,
    14584   year = {2009},
    14585   title = {Monte Carlo electron-trajectory simulations in bright-field and dark-field STEM:Implications for tomography of thick biological sections},
    14586   pages = {213-221},
    14587   journal = {Ultramicroscopy},
    14588   volume = {109},
    14589   author = {Sousa, A.A. and Hohmann-Marriott, M.F. and Zhang, G. and Leapman, R.D.}
    14590 }
    14591 @article{Downing1975,
    14592   year = {1975},
    14593   title = {Discrimination of Heavy and Ligth Components in Electron Microscopy Using Single-Sideband Holographic Techniques},
    14594   pages = {155-175},
    14595   journal = {Optik},
    14596   volume = {42},
    14597   author = {Downing, K.H. and Siegel, B.M.}
    14598 }
    14599 @article{Takeguchi2008,
    14600   year = {2008},
    14601   title = {Development of a stage-scanning system for high-resolution confocal STEM},
    14602   pages = {123-127},
    14603   journal = {Journal of Electron Microscopy},
    14604   volume = {57},
    14605   author = {Takeguchi, M. and Hasimoto, A. and Shimojo, M. and Mitsuishi, K. and Furuya, K.}
    14606 }
    14607 @article{Nottbohm2008,
    14608   year = {2008},
    14609   title = {Novel carbon nanosheets as support for ultrahigh-resolution structural analysis of nanoparticles},
    14610   pages = {885-892},
    14611   journal = {Ultramicroscopy},
    14612   volume = {108},
    14613   author = {Nottbohm, C.T. and Beyer, A. and Sologubenko, A.S. and Ennen, I. and {H\"utten}, A. and {R\"osner}, H. and Eck, W. and Mayer, J. and {G\"olzh\"auser}}
    14614 }
    14615 @article{Mitterbauer2003,
    14616   year = {2003},
    14617   title = { Electron energy-loss near-edge structures of 3d transition metal oxides recorded at high-energy resolution},
    14618   pages = {469-480},
    14619   journal = {Ultramicroscopy},
    14620   volume = {96},
    14621   author = {Mitterbauer, C. and Kothleitner, G. and Grogger, W. and Zandbergen, H. and Freitag, B. and Tiemeijer, P.C. and Hofer, F.}
    14622 }
    14623 @article{Morniroli1992,
    14624   year = {1992},
    14625   title = {Microdiffratction as a tool for crystal structure identification and determination},
    14626   pages = {219-239},
    14627   journal = {Ultramicroscopy},
    14628   volume = {45},
    14629   author = {Morniroli, J.P. and Steeds, J.W.}
    14630 }
    14631 @article{Hetherington2008,
    14632   year = {2008},
    14633   title = {High-Resolution TEM and the Application of Direct and Indirect Aberration Correction},
    14634   pages = {60-67},
    14635   journal = {Microscopy and Microanalysis},
    14636   volume = {14},
    14637   author = {Hetherington, C.J.D. and Chang, L.Y.S. and Haigh, S. and Nellist, P.D. and Gontard, L.C. and Dunin-Borkowski, R.E. and Kirkland, A.I.}
    14638 }
    14639 @article{Hartwell1999,
    14640   year = {1999},
    14641   title = {From molecular to modular cell biology},
    14642   pages = {C47-C50},
    14643   journal = {Nature},
    14644   volume = {402},
    14645   author = {Hartwell, L.H. and Hopfield, J.J. and Leibler, S. and Murray, A.M.}
    14646 }
    14647 @article{Uno2005,
    14648   year = {2005},
    14649   title = {Aberration correction and its automatic control in scanning electron microscopes},
    14650   pages = {438-448},
    14651   journal = {Optik},
    14652   volume = {116},
    14653   author = {Uno, S. and Honda, K. and Nakamura, N. and Matsuya, M. and Zach, J.}
    14654 }
    14655 @article{Joy2002,
    14656   number = {1},
    14657   year = {2002},
    14658   title = {{SMART}- a programm to measure {SEM} resolution and imaging performance},
    14659   pages = {24-34},
    14660   journal = {Journal of Microscopy},
    14661   volume = {208},
    14662   author = {Joy, D.C.}
    14663 }
    14664 @article{Danev2006,
    14665   year = {2006},
    14666   title = {Applicability of thin film phase plates in biological electron microscopy},
    14667   pages = {35-43},
    14668   journal = {Biophysics},
    14669   volume = {2},
    14670   author = {Danev, R. and Nagayama, K.}
    14671 }
    14672 @article{Malac2006,
    14673   year = {2006},
    14674   title = {Bright-field {TEM} imaging of single molecules: Dream or near future?},
    14675   pages = {40-49},
    14676   journal = {Ultramicroscopy},
    14677   volume = {107},
    14678   author = {Malac, M. and Beleggia, M. and Egerton, R. and Zhu, Y.}
    14679 }
    14680 @article{Harutyunyan2009,
    14681   year = {2009},
    14682   title = {Preferential Growth of Single-Walled Carbon Nanotubes with Metallic Conductivity},
    14683   pages = {116-120},
    14684   journal = {Science},
    14685   volume = {326},
    14686   author = {Harutyunyan, A.R. and Chen, G. and Paronyan, T.M. and Pigos, E.M. and Kuznetsov, O.A. and Hewaparakrama, K. and Kim, S.M. and Zakharov, D. and Stach, E.A. and Sumanasekera, G.U.}
    14687 }
    14688 @article{Yan2007,
    14689   year = {2007},
    14690   title = {AUTO3DEM - an automated and high throughput program for image reconstruction of icosahedral particles},
    14691   pages = {73-82},
    14692   journal = {Journal of Strcutural Biology},
    14693   volume = {157},
    14694   author = {Yan, X. and Sinkovits, R.S. and Baker, T.S.}
    14695 }
    14696 @article{Buban2009,
    14697   year = {2009},
    14698   title = {High-resolution low-dose scanning transmission electron microscopy},
    14699   pages = {1-10},
    14700   journal = {Journal of Electron Microscopy},
    14701   author = {Buban, J.P. and Ramasse, Q. and Gipson, B. and Browning, N.D. and Stahlberg, H.}
    14702 }
    14703 @article{Bleloch2004,
    14704   year = {2004},
    14705   title = {Imaging at the picometer scale},
    14706   pages = {42-48},
    14707   journal = {Materials Today},
    14708   author = {Bleloch, A. and Lupini, A. }
    14709 }
    14710 @article{Nelayah2009,
    14711   number = {7},
    14712   year = {2009},
    14713   title = {Direct imaging of surface plasmon resonances on single triangular silver nanoprisms at optical wavelength using low-loss EFTEM imaging},
    14714   pages = {1003-1005},
    14715   journal = {Optics Letters},
    14716   volume = {34},
    14717   author = {Nelayah, J. and Gu, L. and Sigle, W. and Koch, C.T. and Pastoriza-Santos, I. and Liz-Marzan, L.M. and Aken, P.A. van}
    14718 }
    14719 @article{Penrose1956,
    14720   year = {1956},
    14721   title = {On best approximate solution of linear matrix equations},
    14722   pages = {17-19},
    14723   journal = {Proceedings of the Cambridge Philosophical Society},
    14724   volume = {52},
    14725   author = {Penrose, R.}
    14726 }
    14727 @article{Buczko2000,
    14728   year = {2000},
    14729   title = {Excitonic Effects in Core-Excitation Spectra of Semiconductors},
    14730   pages = {2168},
    14731   journal = {Physical Review Letters},
    14732   volume = {85},
    14733   author = {Buczko, R. and Duscher, G. and Pennycook, S>J. and Pantelides, S.T.}
    14734 }
    14735 @article{Penrose1955,
    14736   year = {1955},
    14737   title = {A generalized inverse for matrices},
    14738   pages = {406-413},
    14739   journal = {Proceedings of the Cambridge Philosophical Society},
    14740   volume = {51},
    14741   author = {Penrose, R.}
    14742 }
    14743 @article{Cooper2007,
    14744   year = {2007},
    14745   title = {Medium resolution off-axis electron holography with mV sensitivity},
    14746   journal = {Applied Physics Letters},
    14747   author = {Cooper, D. and Truche, R. and Rivallin, P. and Hartmann, J.-M. and Laugier, F. and Bertin, F. and Chabli, A. and Rouviere, J.-L.}
    14748 }
    14749 @article{Frank2009,
    14750   number = {3},
    14751   year = {2009},
    14752   title = {Single-particle reconstructionof biological macromolecules in electron microscopy - 30 years},
    14753   pages = {139-158},
    14754   journal = {Quaterly Reviews of Biophysics},
    14755   volume = {42},
    14756   author = {Frank, J.}
    14757 }
    14758 @book{Bronstein1991,
    14759   edition = {25th},
    14760   year = {1991},
    14761   title = {Taschenbuch der Mathematik},
    14762   address = {Thun, Frankfurt (Main)},
    14763   publisher = {Teubner},
    14764   author = {Bronstein, I.N. and Semendjajew, K.A.}
    14765 }
    14766 @article{Krivanek2008a,
    14767   year = {2008},
    14768   title = {Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy},
    14769   pages = {121-160},
    14770   journal = {Advances in Imaging and Electron Physics},
    14771   volume = {153},
    14772   author = {Krivanek, O.L. and Delby, N. and keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.}
    14773 }
    14774 @article{Nellist2000,
    14775   year = {2000},
    14776   title = {The principles and interpretation of annular dark-field z-contrast imaging},
    14777   pages = {147-203},
    14778   note = {Copy Bernd,Rolf},
    14779   journal = {Advances in Imaging and Electron Physics},
    14780   volume = {113},
    14781   author = {Nellist, P.D. and Pennycook, S.J.}
    14782 }
    14783 @article{Chu2009a,
    14784   year = {2009},
    14785   title = {Probing surface plasmons in individual Ag nanoparticles in the ultra-violet spectral regime},
    14786   pages = {235705},
    14787   journal = {Nanotechnology},
    14788   volume = {20},
    14789   author = {Chu, M.-W. et al.}
    14790 }
    14791 @article{Boisset1997,
    14792   year = {1997},
    14793   title = {Effects of angular oversampling in three-dimensional reconstruction},
    14794   pages = {131-145},
    14795   journal = {Scanning Microscopy},
    14796   volume = {11},
    14797   author = {Boisset, N. and Penczek, P.A. and Taveau, J-C. and You, V. and Haas, F. de and Lamy, J.}
    14798 }
    14799 @article{Vincent1994,
    14800   year = {1994},
    14801   title = {Double concial beam-rocking system for measurement of integrated electron diffreation intensities},
    14802   pages = {271-282},
    14803   journal = {Ultramicroscopy},
    14804   volume = {53},
    14805   author = {Vincent, R. and Midgley, P.A.}
    14806 }
    14807 @article{Scheres2005a,
    14808   year = {2005},
    14809   title = {Maximum-likelihood Multi-reference Refinement for Electron Microscopy Images},
    14810   pages = {139-149},
    14811   journal = {Journal of Molecular Biology},
    14812   volume = {348},
    14813   author = {Scheres, S.H.W. and Valle, M. and {Nu\~nez}, R. and Sorzano, C.O.S. and Marabini, R. and Herman, G.T. and Carazo, J.-M.}
    14814 }
    14815 @article{Cowley2001,
    14816   number = {3},
    14817   year = {2001},
    14818   title = {{STEM} imaging with a thin annular detector},
    14819   pages = {147-155},
    14820   journal = {Journal of Electron Microscopy},
    14821   volume = {50},
    14822   author = {Cowley, J.M.}
    14823 }
    14824 @article{Uhlemann1996,
    14825   year = {1996},
    14826   title = {Acceptance of imaging energy filters},
    14827   pages = {161-167},
    14828   journal = {Ultramicroscopy},
    14829   volume = {63},
    14830   author = {Uhlemann, S. and Rose, H.}
    14831 }
    14832 @article{Frank1981,
    14833   year = {1981},
    14834   title = {Computer Averaging of Electron Micrographs of 40S Ribosomal Subunits},
    14835   journal = {Science},
    14836   volume = {214},
    14837   author = {Frank, J. and Verschoor, A. and Boublik, M.}
    14838 }
    14839 @article{Maccagnano-Zacher2008,
    14840   year = {2008},
    14841   title = {Effects of tilt on high-resolution ADF-STEM imaging},
    14842   pages = {718-726},
    14843   journal = {Ultramicroscopy},
    14844   volume = {187},
    14845   author = {Maccagnano-Zacher, S.E. and Mkhoyan, K.A. and Kirkland, E.J. and Silcox, J.}
    14846 }
    14847 @article{Gubbens2010,
    14848   year = {2010},
    14849   title = {The GIF quantum, a next generation post-column imaging energy filter},
    14850   journal = {Ultramicroscopy},
    14851   author = {Gubbens, A. and Barfels, M. and Trevor, C. and Twesten, R. and Mooney, P. and Thomas, P. and Menon, N. and Kraus, B. and Mao, C. and Mcginn, B.}
    14852 }
    14853 @article{James1999,
    14854   year = {1999},
    14855   title = {Practical aspects of atomic resolution imaging and analysis in {STEM}},
    14856   pages = {125-139},
    14857   journal = {Ultramicroscopy},
    14858   volume = {78},
    14859   author = {James, E.M. and Browning, N.D.}
    14860 }
    14861 @article{Du2007,
    14862   year = {2007},
    14863   title = {Quantitative comparison of image contrast and pattern between experimental and simulated high-resolution transmission electron micrographs},
    14864   pages = {281-292},
    14865   journal = {Ultramicroscopy},
    14866   volume = {107},
    14867   author = {Du, K. and Hochmeister, K. von and Philipp, F.}
    14868 }
    14869 @article{Krivanek1991,
    14870   year = {1999},
    14871   title = {Developments in EELS instrumentation for spectroscopy and imaging},
    14872   pages = {315-332},
    14873   journal = {Mirosc. Mircoanal. Microstruct},
    14874   volume = {2},
    14875   author = {Krivanek, O.L. and Gubbens, A.J. and Dellby, N.}
    14876 }
    14877 @article{Moore1920,
    14878   year = {1920},
    14879   title = {On the reciprocal of the general algebraic matrix},
    14880   pages = {394-395},
    14881   journal = {Bulletin of the American Mathematical Society},
    14882   volume = {26},
    14883   author = {Moore, E.H.}
    14884 }
    14885 @article{James1997,
    14886   year = {1997},
    14887   title = {A method for measuring the effective source coherence in a field emission transmission electron microscope},
    14888   pages = {174-179},
    14889   journal = {Applied Surface Science},
    14890   volume = {111},
    14891   author = {James, E.M. and Rodenburg, J.M}
    14892 }
    14893 @article{Davey2002,
    14894   year = {2002},
    14895   title = {{DNA}-dependent divalent cation binding in the nucleosome core particle},
    14896   pages = {11169-11174},
    14897   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    14898   volume = {99},
    14899   author = {Davey, C.A. and Richmond, T.J.}
    14900 }
    14901 @article{Kisielowski2001,
    14902   year = {2001},
    14903   title = {Imaging columns of the light elements carbon,nitrogen and oxygen with sub {\AA}ngstrom resolution},
    14904   pages = {243-263},
    14905   journal = {Ultramicroscopy},
    14906   volume = {89},
    14907   author = {Kisielowski, C. and Hetherington, C.J.D. and Wang, Y.C. and Kilaas, R. and O'keefe, M.A. and Thust, A.}
    14908 }
    14909 @article{Chu2009,
    14910   year = {2009},
    14911   title = {Crystal Structure of the {30S} Ribosomal Subunit from Thermus thermophilus: Purification, Crystallization and Structure Determination},
    14912   journal = {Journal of Molecualar Biology},
    14913   author = {Chu, M.-W. and Myroshnchenko, V. and Chen, C.H. and Deng, J.-P. and Mou, C.-Y. and Garcia de Abajo, F.J.G.}
    14914 }
    14915 @article{Chu2008,
    14916   year = {2008},
    14917   title = {Surface exciton polaritons in individual Au nanoparticles in the far-ultraviolet spectral regime},
    14918   pages = {245402},
    14919   journal = {Physical Review B},
    14920   volume = {77},
    14921   author = {Chu, M.-W. and Chen, C.-H. and Garcia de Abajo, F.J.G. and Deng, J.-P. and Mou, C.-Y.}
    14922 }
    14923 @article{Duscher2001,
    14924   year = {2001},
    14925   title = {Core-Hole Effects on Energy-Loss Near-Edge Structure},
    14926   pages = {355},
    14927   journal = {Ultramicroscopy},
    14928   volume = {86},
    14929   author = {Duscher, G. and Buczko, R. and Pennycook, S.J. and Pantelides, S.T.}
    14930 }
    14931 @article{Hytch1998,
    14932   year = {1998},
    14933   title = {Quantitative measurement of displacement and strain fields from HREM micrographs},
    14934   pages = {131-146},
    14935   journal = {Ultramicroscopy},
    14936   volume = {74},
    14937   author = {Hytch, M.J. and Snoeck, E. and Kilaas, R.}
    14938 }
    14939 @article{Lazar2006,
    14940   year = {2006},
    14941   title = {Enhancement of resolution in core-loss and low-loss spectroscopy in a monochromated microscope},
    14942   pages = {1091-1103},
    14943   journal = {Ultramicroscopy},
    14944   volume = {106},
    14945   author = {Lazar, S. and Botton, G.A. and Zandbergen, H.W.}
    14946 }
    14947 @article{Bullogh1999,
    14948   year = {1999},
    14949   title = {The Projection Structure of the Low Temperature K Intermediate of the Bacteriorhodopsin Photocycle D etermined by Electron Diffraction},
    14950   pages = {1663-1671},
    14951   journal = {Journal of Molecular Biology},
    14952   volume = {286},
    14953   author = {Bullough, P.A. and Henderson, R.}
    14954 }
    14955 @article{Rohde2005,
    14956   year = {2005},
    14957   title = {Estimating intensity variance due to noise in registered images: Applications to diffusion tensor {MRI}},
    14958   pages = {673-684},
    14959   journal = {NeuroImage},
    14960   volume = {26},
    14961   author = {Rohde, G.K. and Barnett, A.S. and Basser, P.J. and Pierpaoli, C.}
    14962 }
    14963 @article{Lichte2008a,
    14964   year = {2008},
    14965   title = {Electron holography - basics and applications},
    14966   pages = {1-43},
    14967   journal = {Reports on Progress in Physics},
    14968   author = {Lichte, H. and Lehmann, M.}
    14969 }
    14970 @article{HohmannMarriott2009,
    14971   number = {10},
    14972   year = {2009},
    14973   title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography},
    14974   pages = {729-732},
    14975   journal = {Nature Methods},
    14976   volume = {6},
    14977   author = {Hohmann-Marriott, M.F. and Sousa, A.A. and Azari, A.A. and Glushakova, S. and Zhang, G. and Zimmerberg, J. and Leapmann, R.D.}
    14978 }
    14979 @article{Sawada2009a,
    14980   year = {2009},
    14981   title = {STEM imaging of 47-pm-separated atomic columns by a spherical aberration-corrected electron microscope with a 300-kV cold field emission gun},
    14982   pages = {357-361},
    14983   journal = {Journal of electron microscopy},
    14984   volume = {58},
    14985   author = {Sawada, H. and Tanishiro, Y. and Ohashi, N. and Tomita, T. and Hosokawa, F. and Kaneyama, T. and Kondo, Y. and Takayanagi, K.}
    14986 }
    14987 @article{Kim1997,
    14988   year = {1997},
    14989   title = {Energy distributions of Zr/O/W Schottky electron emission},
    14990   pages = {461-465},
    14991   journal = {Journal of Applied Physics},
    14992   volume = {81},
    14993   author = {Kim, H.S. and Yu, M.L. and Thomson, M.G.R. and Kratchmer, E. and Chang, T.H.P.}
    14994 }
    14995 @article{Baldock2002,
    14996   year = {2002},
    14997   title = {Three-dimensional reconstructions of extracellular matrix polymers using automated electron tomography},
    14998   pages = {130-136},
    14999   journal = {Journal of Structural Biology},
    15000   volume = {138},
    15001   author = {Baldock, C. and Gilpin, C.J. and Koster, A.J. and Ziese, U. and Kadler, K.E. and Kielty, C.M. and Holmes, D.F.}
    15002 }
    15003 @article{Grigorieff1996,
    15004   year = {1996},
    15005   title = {Electron-crystallographic Refinement of the Structure of Bacteriorhopdopsin},
    15006   pages = {393-421},
    15007   journal = {Journal of Molecular Biology},
    15008   volume = {259},
    15009   author = {Grigorieff, N. and Ceska, T.A. and Downing, K.H. and Baldwin, J.M. and Henderson, R.}
    15010 }
    15011 @article{Heel1987,
    15012   year = {1987},
    15013   title = {Similarity measures between images},
    15014   pages = {95-100},
    15015   journal = {Ultramicroscopy},
    15016   volume = {21},
    15017   author = {Heel, M. van}
    15018 }
    15019 @article{Akase2010,
    15020   year = {2010},
    15021   title = {In situ Lorentz microscopy in an alternating magnetic field},
    15022   pages = {1-75},
    15023   journal = {Journal of Electron Microscopy},
    15024   author = {Akase, Z. and Shindo, D.}
    15025 }
    15026 @article{Xiong2009,
    15027   year = {2009},
    15028   title = {CTF determination and correction for low dose tomographic tilt series},
    15029   pages = {378-387},
    15030   journal = {Journal of Structural Biology},
    15031   volume = {168},
    15032   author = {Xiong, Q. and Morphew, M.K. and Schwartz, C.L. and Hoenger, A.H. and Mastronarde, D.N.}
    15033 }
    15034 @article{Unser1987,
    15035   year = {1987},
    15036   title = {A new resolution criterion based on spectral signal-to-noise ratio},
    15037   pages = {39-52},
    15038   journal = {Ultramicroscopy},
    15039   volume = {23},
    15040   author = {Unser, M. and Trus, B.L. and Steven, A.C.}
    15041 }
    15042 @article{Morniroli2007,
    15043   year = {2007},
    15044   title = {LACDIF, a new electron diffraction technique obtained with the LACBED configuration and a Cs corrector: Comparison with electron precession},
    15045   pages = {100-115},
    15046   journal = {Ultramicroscopy},
    15047   volume = {108},
    15048   author = {Morniroli, J.P. and Houdellier, F. and Roucau, C. and Puiggali, J. and Gesti, S. and Redjaimia, A.}
    15049 }
    15050 @article{Fu1999,
    15051   year = {1999},
    15052   title = {Yeast {RNA} Polymerase {II} at 5{\AA} Resolution},
    15053   pages = {799-810},
    15054   journal = {Cell},
    15055   volume = {98},
    15056   author = {Fu, J. and Gnatt, A.L. and Bushnell, D.A. and Jensen, G.J. and Thompson, N.E. and Burgess, R.R. and David, P.R. and Kornberg, R.D.}
    15057 }
    15058 @article{Stadelmann1987,
    15059   year = {1987},
    15060   title = {{EMS} - {A} software package for electron diffration analysis and {HREM} image simulation in material science},
    15061   pages = {131-146},
    15062   journal = {Ultramicroscopy},
    15063   volume = {21},
    15064   author = {Stadelmann, P.A.}
    15065 }
    15066 @inproceedings{Pennycook2003a,
    15067   series = {AIP Conference},
    15068   year = {2003},
    15069   title = {Transmission Electron Microscopy: Overview and Challenges},
    15070   booktitle = {Characterization and Metrology for ULSI Technology},
    15071   pages = {627},
    15072   volume = {683},
    15073   publisher = {American Institute of Physics},
    15074   author = {Pennycook, S.J. and Lupini, A.R. and Borisevich, A. and Varela, M. and Peng, Y. and Nellist, P.D. and Duscher, G. and Buczko, R. and Pantelides, S.T.}
    15075 }
    15076 @article{Ronchi1961,
    15077   year = {1961},
    15078   title = {Resolving power of calculates and detected images},
    15079   pages = {458-460},
    15080   journal = {Journal of the Optical Society of America},
    15081   volume = {51},
    15082   author = {Ronchi, V.}
    15083 }
    15084 @article{Philippsen2007,
    15085   year = {2007},
    15086   title = {The contrast-imaging function for tilted specimens},
    15087   pages = {202-212},
    15088   journal = {Ultramicroscopy},
    15089   volume = {107},
    15090   author = {Philippsen, A. and Engel, H.-A. and Engel, A.}
    15091 }
    15092 @article{Haurauz1986,
    15093   year = {1986},
    15094   title = {Exact filters for general geometry three dimensional reconstruction},
    15095   pages = {146-156},
    15096   journal = {Optik},
    15097   volume = {78},
    15098   author = {Haurauz, G. and Heel, M. van}
    15099 }
    15100 @article{Walther2006,
    15101   year = {2006},
    15102   title = {First experimental test of a new monochromated and aberration-corrected 200 {kV} field-emission scanning transmission electron microscope},
    15103   pages = {963-969},
    15104   journal = {Ultramicroscopy},
    15105   volume = {106},
    15106   author = {Walther, T. and Quandt, E. and Stegmann, H. and Thesen, A. and Benner, G.}
    15107 }
    15108 @article{Muller2006a,
    15109   year = {2006},
    15110   title = {Advancing the Hexapole Cs-Corrector for the Scanning Transmission Electron Microscope},
    15111   pages = {442-455},
    15112   journal = {Microscopy and Microanalysis},
    15113   volume = {12},
    15114   author = {{M\"uller}, H. and Uhlemann, S. and Hartel, P. and Haider, M.}
    15115 }
    15116 @article{Aoyama2008,
    15117   year = {2008},
    15118   title = {STEM tomography for thick biological specimens},
    15119   pages = {70-80},
    15120   journal = {Ultramicroscopy},
    15121   volume = {109},
    15122   author = {Aoyama, K. and takagi, T. and Hirase, A. and Miyazawa, A.}
    15123 }
    15124 @techreport{Zande2004,
    15125   number = {PR-TN-2004/00608},
    15126   year = {2004},
    15127   title = {Aberration analysis in electron microscopy ({T}heory)},
    15128   type = {Technical Note},
    15129   address = { Eindhoven, The Netherlands},
    15130   institution = {Philips Research},
    15131   author = {Zande, M.J. van der and Kok, C.}
    15132 }
    15133 @article{Shibata2004,
    15134   year = {2004},
    15135   title = {Observation of rare-earth segregation in silicon nitride ceramics at subnanometre dimensions},
    15136   pages = {730-734},
    15137   journal = {Nature},
    15138   volume = {428},
    15139   author = {Shibata, N. and Pennycook, S.J. and Gosnell, T.R. and Painter, G.S. and Shelton, W.A. and Becher, P.F.}
    15140 }
    15141 @article{DeRosier1999,
    15142   year = {1999},
    15143   title = {Averaging Data Derived from Images of Helical Structures with Different Symmetries},
    15144   pages = {159-165},
    15145   journal = {Journal of Molecular Biology},
    15146   volume = {289},
    15147   author = {DeRosier, D. and Stokes, D.L. and Darst, S.A.}
    15148 }
    15149 @article{Crozier2006,
    15150   year = {2006},
    15151   title = {Book review: Transmission Electron Energy Loss Spectrometry in Materials Science and the EELS Atlas},
    15152   pages = {332},
    15153   journal = {Micron},
    15154   volume = {38},
    15155   author = {Crozier, P.A.}
    15156 }
    15157 @article{Carlo2002,
    15158   year = {2002},
    15159   title = {Cryo-negative staining reduces electron-beam sensitivity of vitrified biological particles},
    15160   pages = {216-222},
    15161   journal = {Journal of Structural Biology},
    15162   volume = {138},
    15163   author = {Carlo, S. de and El-Bez, C. and Alvarez-Rua, C. and Borge, J. and Dubochet, J.}
    15164 }
    15165 @inproceedings{Tiemeijer1999a,
    15166   series = {Electron Microscopy and Analysis Group Conference EMAG99},
    15167   year = {1999},
    15168   title = {Operation modes of a {TEM} monochromator},
    15169   pages = {191-196},
    15170   volume = {161},
    15171   address = {Sheffiled, UK},
    15172   publisher = {IOP Publishing Ltd},
    15173   author = {Tiemeijer, P.C.}
    15174 }
    15175 @article{Thust2009,
    15176   year = {2009},
    15177   title = {High-Resolution Transmission Electron Microscopy on an Absolute Contrast Scale},
    15178   pages = {220801},
    15179   journal = {Physical Review Letters},
    15180   volume = {102},
    15181   author = {Thust, A.}
    15182 }
    15183 @article{Suenaga2009,
    15184   year = {2009},
    15185   title = {Visualizing and identifying single atoms using electron energy-loss spectroscopy with low accelerating voltage},
    15186   pages = {1-4},
    15187   journal = {Nature Chemistry},
    15188   author = {Suenaaga, K. and Sato, Y. and Liu, Z. and kataura, H. and Okazaki, T. and Kimoto, K. and Sawada, H. and Sasaki, T. and Omoto, K. and Kaneyama, T. and Kondo, Y.}
    15189 }
    15190 @article{Hill2008,
    15191   year = {2008},
    15192   title = {The ALIS He ion source and its application to high resolution microscopy},
    15193   pages = {135-141},
    15194   journal = {Physics Procedia},
    15195   volume = {1},
    15196   author = {Hill, R.and Notte, J. and Ward, B.}
    15197 }
    15198 @article{Hohn2007,
    15199   year = {2007},
    15200   title = {SPARX, a new environment for Cryo-EM image processing},
    15201   pages = {47-55},
    15202   journal = {Journal of Strcutural Biology},
    15203   volume = {157},
    15204   author = {Hohn, M. and Tang, G. and Goodyear, G. and Baldwin, P.R. and Huang, Z. and Penczek, P.A. and Yang, C. and Glaeser, R.M. and Adama, P.D. and Ludtke, S.J.}
    15205 }
    15206 @article{Tang2007,
    15207   year = {2007},
    15208   title = {EMAN2: An extensible image processing suite for electron microscopy},
    15209   pages = {38-46},
    15210   journal = {Journal of Strcutural Biology},
    15211   volume = {157},
    15212   author = {Tang, G. and Peng, L. and Baldwin, P.R. and Mann, D.S. and Jiang, W. and Rees, I. and Ludtke, S.J.}
    15213 }
    15214 @article{Krivanek2009,
    15215   year = {2009},
    15216   title = {High-energy resolution monochromator for aberration-corrected scanning transmission electron microscopy/electron energy-loss spectroscopy},
    15217   pages = {3683-3697},
    15218   journal = {Philosophical Transactions of the Royal Society},
    15219   volume = {367},
    15220   author = {Krivanek, O.L. and Ursin, J.P. and Bacon, N.J. and Corbin, G.J. and Delby, N. and Hrncirik, P. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.}
    15221 }
    15222 @article{Krivanek2008,
    15223   year = {2008},
    15224   title = {An electron microscope for the aberration-corrected era},
    15225   pages = {179-195},
    15226   journal = {Ultramicroscopy},
    15227   volume = {108},
    15228   author = {Krivanek, O.L. and Corbin, G.K. and Dellby, N. and Elston, B.F. and Keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S. and Woodruff,J.W.}
    15229 }
    15230 @article{Gunawan2009,
    15231   year = {2009},
    15232   title = {Locating La atoms in epitaxial $Bi_{3.25}La_{0.75}Ti_3O_{12}$ films through atomic resolution electron energy loss spectroscopy mapping},
    15233   pages = {192902},
    15234   journal = {Applied Physics Letters},
    15235   volume = {95},
    15236   author = {Gunawan, L. and Lazar, S. and Gautreau, O. and Narnagea, C. and Pignolet, A. and Botton, G.A.}
    15237 }
    15238 @misc{Krivanek2001,
    15239   year = {2001},
    15240   title = {Autoadjusting charged-particle probe-forming apparatus},
    15241   note = {pending},
    15242   howpublished = {EP application number: 01308443.9},
    15243   author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.},
    15244   organization = {NION}
    15245 }
    15246 @article{Cox1986,
    15247   year = {1986},
    15248   title = {Information capacity and resolution in an optical system},
    15249   pages = {1152-1158},
    15250   journal = {Journal of the Optical Society of America A},
    15251   volume = {3},
    15252   author = {Cox, I.J. and Sheppard, C.J.R.}
    15253 }
    15254 @article{Downing2004,
    15255   year = {2004},
    15256   title = {Experimental characterization and mitigation of specimen charging on thin films with one conducting layer},
    15257   pages = {783-789},
    15258   journal = {Microscopy and Microanalysis},
    15259   volume = {10},
    15260   author = {Downing, K.H. and McCartney, M.R. and Glaeder, R.M.}
    15261 }
    15262 @article{Hohenstein1992,
    15263   year = {1992},
    15264   title = {Single Sideband Imagin in High-Resolution Electron Microscopy},
    15265   pages = {485-492},
    15266   journal = {Applied Physics A},
    15267   volume = {54},
    15268   author = {Hohenstein, M.}
    15269 }
    15270 @article{Mitsuishi2006,
    15271   year = {2006},
    15272   title = {Ultrahigh-Vacuum Third-Order Spherical Aberration (Cs) Corrector for a Scanning Transmission Electron Microscope},
    15273   pages = {1-5},
    15274   journal = {Microscopy and Microanalysis},
    15275   volume = {12},
    15276   author = {Mitsuishi, K. and Takeguchi, M. and Kondo, Y. and Hosokawa, F. and Okamoto, K. and Sannomiva, T. and Hori, M. and Iwama, T.}
    15277 }
    15278 @article{Koster1987,
    15279   year = {1987},
    15280   title = {An autofocus method for a {TEM}},
    15281   pages = {209-222},
    15282   journal = {Ultramicroscopy},
    15283   volume = {21},
    15284   author = {Koster, A.J. and Bos, A. van den and Mast, K.D. van der}
    15285 }
    15286 @article{Egerton2003,
    15287   year = {2003},
    15288   title = {New techniques in electron energy-loss spectroscopy and energy-filtered imaging},
    15289   pages = {127-139},
    15290   journal = {Micron},
    15291   volume = {34},
    15292   author = {Egerton, R.F.}
    15293 }
    15294 @article{Egerton2004,
    15295   year = {2004},
    15296   title = {Radiation damage in the TEM and SEM},
    15297   pages = {399-409},
    15298   journal = {Micron},
    15299   volume = {35},
    15300   author = {Egerton, R.F. and Li, P. and Malac, M.}
    15301 }
    15302 @article{Egerton2007,
    15303   year = {2007},
    15304   title = {Limits to the spatial, energy and momentum resolution of electron energy-loss spectroscopy},
    15305   pages = {575-586},
    15306   journal = {Ultramicroscopy},
    15307   volume = {107},
    15308   author = {Egerton, R.F.}
    15309 }
    15310 @article{Egerton2009,
    15311   year = {2009},
    15312   title = {Electron energy-loss spectroscopy in the TEM},
    15313   pages = {016502},
    15314   journal = {Reports on Progress in Physics},
    15315   volume = {72},
    15316   author = {Egerton, R.F.}
    15317 }
    15318 @article{Baldwin1988,
    15319   year = {1988},
    15320   title = {Images of purple membrane at 2.8{\AA} resolution obtained by cryo-electron microscopy},
    15321   pages = {585-591},
    15322   journal = {Journal of Molecular Biology},
    15323   volume = {202},
    15324   author = {Baldwin, J.M. and Henderson, R. and Backman, E. and Zemlin, F.}
    15325 }
    15326 @article{Zhang2008,
    15327   number = {6},
    15328   year = {2008},
    15329   title = {Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction},
    15330   pages = {1867-1872},
    15331   journal = {Proceedings of the National Academy of Science of America},
    15332   volume = {105},
    15333   author = {Zhang, X. and Settembre, E. and Xu. Chen, Dormitzer, P.R. and Bellamy, R. and Harrison, S.C. and Grigorieff, N.}
    15334 }
    15335 @article{Downing1979,
    15336   year = {1979},
    15337   title = {Possibilities of heavy atom discrimination using single-sideband techniques},
    15338   pages = {13-31},
    15339   journal = {Ultramicroscopy},
    15340   volume = {4},
    15341   author = {Downing, K.H.}
    15342 }
    15343 @article{Zheng2007,
    15344   year = {2007},
    15345   title = {Automated acquisition of electron microscopic random conical tilt sets},
    15346   pages = {148-155},
    15347   journal = {Journal of Strcutural Biology},
    15348   volume = {157},
    15349   author = {Zheng, S.Q. and Kollman, J.M. and Braunfeld, M.B. and Sedat, J.W. and Agard, D.A.}
    15350 }
    15351 @article{Eyidi2006,
    15352   year = {2006},
    15353   title = {Short note on parallel illumination in the {TEM}},
    15354   pages = {1144-1149},
    15355   journal = {Ultramicroscopy},
    15356   volume = {106},
    15357   author = {Eyidi, D. and Hebert, C. and Schattschneider, P.}
    15358 }
    15359 @article{Mallick2005,
    15360   year = {2005},
    15361   title = {ACE: Automated CTF Estimation},
    15362   pages = {8-29},
    15363   journal = {Ultramicroscopy},
    15364   volume = {104},
    15365   author = {Mallick, S.P. and Carragher, B. and Potter, C.S. and Kriegman, D.J.}
    15366 }
    15367 @article{Liu2009,
    15368   year = {2009},
    15369   title = {Off-axis emission properties for the extended Schottky electron source},
    15370   pages = {2547-2552},
    15371   journal = {J. Vac. Sci. Technol. B},
    15372   volume = {27},
    15373   author = {Liu, K. and Schwind, G.A. and Swanson, L.W.}
    15374 }
    15375 @article{Kirkland1987,
    15376   year = {1987},
    15377   title = {Simulation of annular dark field {STEM} images using a modified mutlislice method},
    15378   pages = {77-96},
    15379   journal = {Ultramicroscopy},
    15380   volume = {23},
    15381   author = {Kirkland, E.J. and Loane, R.F. and Silcox, J.}
    15382 }
    15383 @article{Sigworth1998,
    15384   year = {1998},
    15385   title = {A Maximum-Likelihood Approach to Single-Particle Image Refinement},
    15386   pages = {328-339},
    15387   journal = {Journal of Structural Biology},
    15388   volume = {122},
    15389   author = {Sigworth, F.J.}
    15390 }
    15391 @article{Harada2004,
    15392   number = {17},
    15393   year = {2004},
    15394   title = {Double-biprism electron interferometry},
    15395   pages = {3219-3231},
    15396   journal = {Applied Physics Letters},
    15397   volume = {84},
    15398   author = {Harada, K. and Akashi, T. and Togawa, Y. and Matsuda, T.}
    15399 }
    15400 @article{Mooney2007,
    15401   year = {2007},
    15402   title = {Optimization of Image Collection for Cellular Electron Microscopy},
    15403   pages = {661-719},
    15404   journal = {Methods in cell biology},
    15405   volume = {79},
    15406   author = {Mooney, P..}
    15407 }
    15408 @article{Brarnova1999,
    15409   year = {2004},
    15410   title = {The optics of round and multipole electrostatic lenses},
    15411   pages = {1-207},
    15412   journal = {Advances in electronics and electron physics},
    15413   volume = {76},
    15414   author = {Baranova, L.A. and Yavor, S.Y.}
    15415 }
    15416 @article{Kuramochi2008,
    15417   year = {2008},
    15418   title = {Measurement of twofold astigmatism of probe-forming lens using low-order zone-axis ronchigram},
    15419   pages = {339-345},
    15420   journal = {Ultramicroscopy},
    15421   volume = {108},
    15422   author = {Kurmochi, K. and Yamazaki, T. and Kotaka, Y. and Kikuchi, Y. and Hashimoto, I. and Watanabe, K.}
    15423 }
    15424 @article{Kuramochi2009,
    15425   year = {2009},
    15426   title = {Effect of chromatic aberration on atomic-resolved spherical aberration corrected STEM images},
    15427   pages = {36-42},
    15428   journal = {Ultramicroscopy},
    15429   volume = {110},
    15430   author = {Kurmochi, K. and Yamazaki, T. and Kotaka, Y. and Ohtsuka, M. and Hashimoto, I. and Watanabe, K.}
    15431 }
    15432 @article{Crewe1980,
    15433   year = {1980},
    15434   title = {The physics of the high-resolution scanning microscope},
    15435   pages = {621-642},
    15436   journal = {Rep. Prog. Phys.},
    15437   volume = {43},
    15438   author = {Crewe, A.V.}
    15439 }
    15440 @article{Haider2008,
    15441   year = {2008},
    15442   title = {Present and Future Hexapole Aberration Correctors for High-Resolution Electron Microscopy},
    15443   pages = {43-119},
    15444   journal = {Advances in Imaging and Electron Physics},
    15445   volume = {153},
    15446   author = {Haider, M. and Mueller, H. and Uhlemann, S.}
    15447 }
    15448 @article{Pogany1968,
    15449   year = {1968},
    15450   title = {Reciprocity in Electron Diffraction and Microscopy},
    15451   pages = {103-109},
    15452   journal = {Acta Crystallography A},
    15453   volume = {24},
    15454   author = {Pogany, A.P. and Turner, P.S.}
    15455 }
    15456 @article{Sasaki2010,
    15457   year = {2010},
    15458   title = {Performance of low-voltage STEM/TEM with delta corrector and cold field emission gun},
    15459   journal = {Journal of Electron Microscopy},
    15460   author = {Sasaki, T. and Sawada, H. and Hosokawa, F. and Kohno, Y. and Tomita, T. and Kaneyama, T. and Kondo, Y. and Kimoto, K. and Sato, Y. and Suenaga, K.}
    15461 }
    15462 @article{Muller2008,
    15463   year = {2008},
    15464   title = {Atomic-Scale Chemical Imaging of Composition and Bonding by Aberration-Corrected Microscopy},
    15465   pages = {1073-1076},
    15466   journal = {Science},
    15467   volume = {319},
    15468   author = {Muller, D.A. and Fitting Kourkoutis, L. and Murfitt, M. and Song, J.H. and Hwang, H.Y. and Silcox, J. and Dellby, N. and Krivanek, O.L.}
    15469 }
    15470 @article{Meyer2008,
    15471   year = {2008},
    15472   title = {Imaging and dynamics of light atoms and molecules on graphene},
    15473   pages = {319-323},
    15474   journal = {Nature},
    15475   volume = {454},
    15476   author = {Meyer, J.C. and Girit, C.O. and Crommie, M.F. and Zettl, A.}
    15477 }
    15478 @article{Muller2006,
    15479   year = {2006},
    15480   title = {Room design for high-performance electron microscopy},
    15481   pages = {1033-1040},
    15482   journal = {Ultramicroscopy},
    15483   volume = {106},
    15484   author = {Muller, D.A. and Kirkland, E.J. and Thomas, M.G. and Grazul, J.L. and Fitting, L. and Weyland, M.}
    15485 }
    15486 @article{Xing2009,
    15487   year = {2009},
    15488   title = {A rapid method to correct objective lens astigmatism in a TEM},
    15489   pages = {287-290},
    15490   journal = {Ultramicroscopy},
    15491   volume = {109},
    15492   author = {Xing, Q. and Lograsso, T.A.}
    15493 }
    15494 @article{Nellist1998a,
    15495   year = {1998},
    15496   title = {Accurate structure determination from image reconstruction in {ADF} {STEM}},
    15497   pages = {159-170},
    15498   journal = {Journal of Microscopy},
    15499   volume = {1-2},
    15500   author = {Nellist, P.D. and Pennycook, S.J.}
    15501 }
    15502 @article{Schaffer2009,
    15503   year = {2009},
    15504   title = {High-resolution surface plasmon imaging of gold nanoparticles by energy-filtered transmission electron microscopy},
    15505   pages = {041401},
    15506   journal = {Physical Review B},
    15507   volume = {79},
    15508   author = {Schaffer, B. and Hohenester, U. and Truegler, A. and Hofer, F.}
    15509 }
    15510 @inproceedings{Rieger2008,
    15511   month = {September 1-5},
    15512   year = {2008},
    15513   title = {Method to determine image sharpness and resolution
    15514 in Scanning Electron Microscopy images},
    15515   booktitle = {EMC 2008, Vol.1: Instrumentation and Methods},
    15516   pages = {613-614},
    15517   editor = {Luysberg, M. and Tillmann, K. and Weirich, T.},
    15518   address = {Berline},
    15519   publisher = {Springer Verlag},
    15520   author = {Rieger, B. and Veen, G.N.A. van}
    15521 }
    15522 @mastersthesis{Smith2009,
    15523   year = {2009},
    15524   title = {Improving single molecule
    15525 fluorescence superresolution techniques},
    15526   school = {Delft University of Technology},
    15527   author = {Smith, S.C.}
    15528 }
    15529 @mastersthesis{Vroonland2010,
    15530   month = {June},
    15531   year = {2010},
    15532   title = {Superresolution Using Blinking Emitters},
    15533   address = {Delft, The Netherlands},
    15534   school = {Delft University of Technology},
    15535   author = {Vroonland, S.}
    15536 }
    15537 @article{Hell2009,
    15538   year = {2009},
    15539   title = {Microscopy and its focal switch},
    15540   pages = {24-32},
    15541   journal = {Nature Methods},
    15542   volume = {6},
    15543   author = {Hell, S.W.}
    15544 }
    15545 @article{Small2009,
    15546   number = {2},
    15547   year = {2009},
    15548   title = {Theoretical Limits on Errors and Acquisition Rates in Localizing Switchable Fluorophores},
    15549   pages = {L16-L18},
    15550   journal = {Biophysical Journal - Biophysical Letters},
    15551   volume = {92},
    15552   author = {Small, A.R.}
    15553 }
    15554 @article{Podczeck1997,
    15555   year = {1997},
    15556   title = {A shape factor to assess the shape of particles using image analysis},
    15557   pages = {47-53},
    15558   journal = {Powder Technology},
    15559   volume = {93},
    15560   author = {Podczeck, F.}
    15561 }
    15562 @article{Shaner2004,
    15563   number = {12},
    15564   year = {2004},
    15565   title = {Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein},
    15566   pages = {1567-1672},
    15567   journal = {Nature Biotechnology},
    15568   volume = {22},
    15569   author = {Shaner, N.C. and Campbell, R.E. and Steinbach, P.A. and Giepmans, B.N.G. and Palmer, A.E. and Tsien, R.Y.}
    15570 }
    15571 @article{Sader2010,
    15572   year = {2010},
    15573   title = {Quantitativ eanalysis of image contrast in phase contrast STEM for low dose imaging},
    15574   pages = {1324-1331},
    15575   journal = {Ultramicroscopy},
    15576   volume = {110},
    15577   author = {Sader, K. and Brown, A. and Brydon, R. and Bleloch, A.}
    15578 }
    15579 @article{Aert2010,
    15580   year = {2010},
    15581   title = {Linear versus non-linear structural information limit in high-resolution transmission electron microscopy},
    15582   pages = {1404-1410},
    15583   journal = {Ultramicroscopy},
    15584   volume = {110},
    15585   author = {Aert, s. van and Chen, J.H. and Dyck, D. van}
    15586 }
    15587 @article{Donzel2001,
    15588   number = {{15}},
    15589   year = {2001},
    15590   title = {{Hydrophilic Poly(dimethylsiloxane) Stamps for Microcontact Printing}},
    15591   journal = {{Advanced Materials}},
    15592   volume = {{13}},
    15593   author = {Donzel, Christian and Geissler, Matthias and Bernard, Andr\\\'e and Wolf, Heiko and Michel, Bruno and Hilborn, J\\\"ons and Delamarche, Emmanuel}
    15594 }
    15595 @article{Wang1997,
    15596   number = {{3}},
    15597   year = {1997},
    15598   title = {{Stretching DNA with Optical Tweezers}},
    15599   pages = {{1335-1346}},
    15600   journal = {{Biophysical Journal}},
    15601   volume = {{72}},
    15602   author = {Wang, Michelle D. and Yin, Hong and Landick, Robert and Gelles, Jeff and Block, Steven M.}
    15603 }
    15604 @article{Blanchard1999,
    15605   number = {{32}},
    15606   year = {1999},
    15607   title = {{Simultaneous multiplane imaging with a distorted diffraction grating}},
    15608   pages = {{6692-6699}},
    15609   journal = {{Applied Optics}},
    15610   volume = {{38}},
    15611   author = {Blanchard, Paul M.
    15612  Greenaway, Alan H.}
    15613 }
    15614 @article{Eversole2007,
    15615   year = {2007},
    15616   title = {{Plasmonic laser nanoablation of silicon by the scattering of femtosecond pulses near gold nanospheres}},
    15617   pages = {{283-291}},
    15618   journal = {{Applied Physics A}},
    15619   volume = {{89}},
    15620   author = {Eversole, D. and Luk'Yanchuk, B. and Ben-Yakar, A.}
    15621 }
    15622 @article{Dessinges2002,
    15623   number = {{24}},
    15624   year = {2002},
    15625   title = {{Stretching Single Stranded DNA, a Model Polyelectrolyte}},
    15626   pages = {{248102-248106}},
    15627   journal = {{Physical Review Letters}},
    15628   volume = {{89}},
    15629   author = {Dessinges, M. N. and Maier, B. and Zhang, Y. and Peliti, M. and Bensimon, D. and Croquette, V.}
    15630 }
    15631 @article{Taylor1990,
    15632   number = {{2}},
    15633   year = {1990},
    15634   title = {{Application of the Method of Phage T4 DNA Ligase-catalyzed Ring-closure to the Study of DNA Structure}},
    15635   pages = {{363-376}},
    15636   journal = {{Journal of Molecular Biology}},
    15637   volume = {{212}},
    15638   author = {Taylor, William H. and Hagerman, Paul J.}
    15639 }
    15640 @article{Uhlenbeck1930,
    15641   year = {1930},
    15642   title = {{On the Theory of the Brownian Motion}},
    15643   journal = {{Physical Review}},
    15644   volume = {{36}},
    15645   author = {Uhlenbeck, G.E. and Ornstein, L.S.}
    15646 }
    15647 @article{Yguerabide2001,
    15648   number = {{S37}},
    15649   year = {2001},
    15650   title = {{Resonance Light Scattering Particles as Ultrasensitive Labels for Detection of Analytes in a Wide Range of Applications}},
    15651   pages = {{71-81}},
    15652   journal = {{Journal of Cellular Biochemistry Supplement}},
    15653   volume = {{84}},
    15654   author = {Yguerabide, Juan and Yguerabide, Evangelina E.}
    15655 }
    15656 @article{Samuel2002,
    15657   year = {2002},
    15658   title = {{Elasticity of semiflexible polymers}},
    15659   pages = {{050801}},
    15660   journal = {{Physical Review E}},
    15661   volume = {{66}},
    15662   author = {Samuel, Joseph and Sinha, Supurna}
    15663 }
    15664 @article{Porschke1991,
    15665   year = {1991},
    15666   title = {{Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations}},
    15667   pages = {{169-179}},
    15668   journal = {{Biophysical Chemistry}},
    15669   volume = {{40}},
    15670   author = {Porschke, Dietmar}
    15671 }
    15672 @article{Schutz2000,
    15673   number = {{1}},
    15674   year = {2000},
    15675   title = {{3D Imaging of Individual Ion Channels in Live Cells at 40 nm Resolution}},
    15676   pages = {{25-31}},
    15677   journal = {{Single Molecules}},
    15678   volume = {{1}},
    15679   author = {Sch\\\"utz, Gerhard J. and Pastushenko, Vassili, Ph. and Gruber, Hermann J. and Knaus, Hans-G\\\"unter and Pragl, Bernt and Schindler, Hansgeorg}
    15680 }
    15681 @incollection{Vilfan2009,
    15682   year = {2009},
    15683   title = {{Magnetic Tweezers for Single-Molecule Experiments}},
    15684   booktitle = {{Springer Handbook of Single-Molecule Biophysics}},
    15685   editor = {Hinterdorfer, P. and A., van Oijen},
    15686   publisher = {{Springer Science+Business Media}},
    15687   author = {Vilfan, I.D. and Lipfert, J. and Koster, D.A. and Lemay, S.G. and Dekker, N.H.}
    15688 }
    15689 @article{Dvorak2003,
    15690   number = {{2}},
    15691   year = {2003},
    15692   title = {{Approaches to Messenger RNA Detection - Comparison of Methods}},
    15693   pages = {{131-135}},
    15694   journal = {{Biomedical Papers}},
    15695   volume = {{147}},
    15696   author = {Dvor\\\'ak, Zdenek and Pascussi, Jean-Marc and Modriansk\\\'y, Martin}
    15697 }
    15698 @article{Medalion2010,
    15699   number = {{4}},
    15700   year = {2010},
    15701   title = {{Coupling of twist and writhe in short DNA loops
    15702  }},
    15703   pages = {{045101}},
    15704   journal = {{The Journal of Chemical Physics}},
    15705   volume = {{132}},
    15706   author = {Medalion, Shlomi and Rappaport, Shay M. and Rabin, Yitzhak}
    15707 }
    15708 @article{Cherif2006,
    15709   number = {{2}},
    15710   year = {2006},
    15711   title = {{Clinically Related Protein-Peptide Interactions Monitored in Real Time on Novel Peptide Chips by Surface Plasmon Resonance Imaging}},
    15712   pages = {{255-262}},
    15713   journal = {{Clinical Chemistry}},
    15714   volume = {{52}},
    15715   author = {Cherif, Boutheina and Roget, Andr\\\'e and Villiers, Christian L. and Calemczuk, Roberto and Leroy, Vincent and Marche, Patrice N. and Livache, Thierry and Villiers, Marie-Bernadette}
    15716 }
    15717 @article{Gibson1991,
    15718   number = {{10}},
    15719   year = {1991},
    15720   title = {{Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy}},
    15721   pages = {{1601-1613}},
    15722   journal = {{Journal of the Optical Society of America A}},
    15723   volume = {{8}},
    15724   author = {Gibson, Sarah Frisken and Lanni, Frederick}
    15725 }
    15726 @misc{Bouchiat2007,
    15727   year = {2007},
    15728   title = {{Spatial Constraint Corrections to the Elasticity of dsDNA Measured with Magnetic Tweezers}},
    15729   author = {Bouchiat, C.}
    15730 }
    15731 @article{Bouchiat2006,
    15732   number = {{03}},
    15733   year = {2006},
    15734   title = {{Entropic elasticity of double-strand DNA subject to simple spatial constraints}},
    15735   pages = {{P03019}},
    15736   journal = {{Journal of Statistical Mechanics: Theory and Experiment}},
    15737   author = {Bouchiat, C.}
    15738 }
    15739 @article{Yoshinaga2002,
    15740   number = {{22}},
    15741   year = {2002},
    15742   title = {{Multiscaling in a long semiflexible polymer chain in two dimensions}},
    15743   journal = {{Journal of Chemical Physics}},
    15744   volume = {{116}},
    15745   author = {Yoshinaga, Natsuhiko and Yoshikawa, Kenichi and Kidoaki, Satoru}
    15746 }
    15747 @article{Sottas1999,
    15748   year = {1999},
    15749   title = {{Brownian Dynamics Simulation of DNA Condensation}},
    15750   pages = {{1858-1870}},
    15751   journal = {{Biophysical Journal}},
    15752   volume = {{77}},
    15753   author = {Sottas, Pierre-Edouard and Larquet, Eric and Stasiak, Andrzej and Dubochet, Jacques}
    15754 }
    15755 @article{Yamakawa1976a,
    15756   number = {{12}},
    15757   year = {1976},
    15758   title = {{Statistical mechanics of helical wormlike chains. I. Differential equations and moments}},
    15759   pages = {{5222-5228}},
    15760   journal = {{The Journal of Chemical Physics}},
    15761   volume = {{64}},
    15762   author = {Yamakawa, Hiromi and Fujii, Motoharu}
    15763 }
    15764 @article{Odijk1979,
    15765   year = {1979},
    15766   title = {{On the Ionic-Strength Dependence of the Intrinsic Viscosity of DNA}},
    15767   pages = {{3111-3113}},
    15768   journal = {{Biopolymers}},
    15769   volume = {{18}},
    15770   author = {Odijk, Theo}
    15771 }
    15772 @article{Sheppard1997,
    15773   number = {{3}},
    15774   year = {1997},
    15775   title = {{Effects of specimen refractive index on confocal imaging}},
    15776   pages = {{366-374}},
    15777   journal = {{Journal of Microscopy}},
    15778   volume = {{185}},
    15779   author = {Sheppard, C. J. R. and T\\\"or\\\"ok, P.}
    15780 }
    15781 @article{Vologodskii1994,
    15782   number = {{20}},
    15783   year = {1994},
    15784   title = {{DNA Extension under the Action of an External Force}},
    15785   pages = {{5623-5625}},
    15786   journal = {{Macromolecules}},
    15787   volume = {{27}},
    15788   author = {Vologodskii, Alexander}
    15789 }
    15790 @article{Rayleigh1919,
    15791   year = {1919},
    15792   title = {{On the problem of random vibrations, and of random flights in one, two, or three dimensions}},
    15793   pages = {{321-347}},
    15794   journal = {{Philosophical Magazine}},
    15795   volume = {{37}},
    15796   author = {Rayleigh, Lord}
    15797 }
    15798 @article{Lukic2007,
    15799   year = {2007},
    15800   title = {{Motion of a colloidal particle in an optical trap}},
    15801   pages = {{011112}},
    15802   journal = {{Physical Review E}},
    15803   volume = {{76}},
    15804   author = {{Luki\c{c}}, B. and Jeney, S. and Sviben, Z. and Kulik, A. and Florin, E.-L. and {Forr\'o}, L.}
    15805 }
    15806 @article{Storm2003a,
    15807   number = {{5}},
    15808   year = {2003},
    15809   title = {{The bend stiffness of S-DNA}},
    15810   pages = {{760-766}},
    15811   journal = {{Europhysics Letters (EPL)}},
    15812   volume = {{62}},
    15813   author = {Storm, C. and Nelson, P. C.}
    15814 }
    15815 @article{Odijk1977,
    15816   year = {1977},
    15817   title = {{Polyelectrolytes near the Rod Limit}},
    15818   pages = {{477-483}},
    15819   journal = {{Journal of Polymer Science: Polymer Physics Edition}},
    15820   volume = {{15}},
    15821   author = {Odijk, Theo}
    15822 }
    15823 @article{Beausang2007b,
    15824   year = {2007},
    15825   title = {{Diffusive hidden Markov model characterization of DNA looping dynamics in tethered particle experiments}},
    15826   journal = {{Physical Biology}},
    15827   author = {Beausang, John F. and Nelson, Philip C.}
    15828 }
    15829 @article{Fixman1973,
    15830   number = {{4}},
    15831   year = {1973},
    15832   title = {{Polymer conformational statistics. I. Probability distribution}},
    15833   pages = {{1553-1558}},
    15834   journal = {{The Journal of Chemical Physics}},
    15835   volume = {{58}},
    15836   author = {Fixman, Marshall and Alben, Richard}
    15837 }
    15838 @article{Gupta1993,
    15839   number = {{2}},
    15840   year = {1993},
    15841   title = {{Mean-field theory of phase transitions in liquid-crystalline polymers}},
    15842   pages = {{1588-1596}},
    15843   journal = {{Journal of Chemical Physics}},
    15844   volume = {{98}},
    15845   author = {Gupta, Anshu M. and Edwards, Sam F.}
    15846 }
    15847 @article{Butler2005,
    15848   year = {2005},
    15849   title = {{Brownian dynamics simulations of a flexible polymer chain which includes continuous resistance and multibody hydrodynamic interactions}},
    15850   journal = {{The Journal of Chemical Physics}},
    15851   volume = {{122}},
    15852   author = {Butler, Jason E. and Shaqfeh, Eric S.G.}
    15853 }
    15854 @article{Csiszar1991,
    15855   number = {{4}},
    15856   year = {1991},
    15857   title = {{Why Least Squares and Maximum Entropy? An Axiomatic Approach to Inference for Linear Inverse Problems}},
    15858   pages = {{2032-2066}},
    15859   journal = {{The Annals of Statistics}},
    15860   volume = {{19}},
    15861   author = {Csiszar, Imre}
    15862 }
    15863 @inproceedings{Dietrich2006,
    15864   year = {2006},
    15865   title = {{Advances in the Development of a Novel Method to be used in Proteomics using Gold Nanobeads}},
    15866   booktitle = {{Ultrasensitive and Single-Molecule Detection Technologies}},
    15867   editor = {Enderlein, J\\\"org and Gryczynski, Zygmunt K.},
    15868   volume = {{6092}},
    15869   publisher = {{Proceedings of SPIE}},
    15870   author = {Dietrich, Heidelinde R.C. and Young, Ian T. and Garini, Yuval}
    15871 }
    15872 @inproceedings{Dietrich2007,
    15873   year = {2007},
    15874   title = {A New Optical Method for Characterizing Single Molecule Interactions based on Dark Field Microscopy},
    15875   booktitle = {{Ultrasensitive and Single-Molecule Detection Technologies II}},
    15876   pages = {644403-1 - 64403-8},
    15877   editor = {Enderlein, J. and Gryczynski, Z.K.},
    15878   volume = {{6444}},
    15879   publisher = {{Proceedings of SPIE}},
    15880   author = {Dietrich, Heidelinde R.C. and Vermolen, Bart J. and Rieger, Bernd and Young, Ian T. and Garini, Yuval}
    15881 }
    15882 @article{Torok1996,
    15883   number = {{3}},
    15884   year = {1996},
    15885   title = {{Dark-field and differential phase contrast imaging modes in confocal microscopy using a half-aperture stop}},
    15886   pages = {{101-106}},
    15887   journal = {{Optik}},
    15888   volume = {{103}},
    15889   author = {T\\\"or\\\"ok, P. and Sheppard, C. J. R. and Laxzik, Z.}
    15890 }
    15891 @article{Dietrich2002,
    15892   number = {{1}},
    15893   year = {2002},
    15894   title = {{Relationship of Lipid Rafts to Transient Confinement Zones Detected by Single Particle Tracking}},
    15895   pages = {{274-284}},
    15896   journal = {{Biophysical Journal}},
    15897   volume = {{82}},
    15898   author = {Dietrich, Chrisian and Yang, Bing and Fujiwara, Takahiro and Kusumi, Akihiro and Jacobson, Ken}
    15899 }
    15900 @article{Schafer1991,
    15901   number = {{6334}},
    15902   year = {1991},
    15903   title = {{Transcription by single molecules of RNA polymerase observed by light microscopy}},
    15904   pages = {{444-448}},
    15905   journal = {{Nature}},
    15906   volume = {{352}},
    15907   author = {Schafer, Dorothy A. and Gelles, Jeff and Sheetz, Michael P. and Landick, Robert}
    15908 }
    15909 @book{Mazo2002,
    15910   series = {{International series of monographs on physics}},
    15911   year = {2002},
    15912   title = {{Brownian Motion: fluctuations, dynamics, and applications}},
    15913   address = {{Oxford}},
    15914   publisher = {{Clarendon Press}},
    15915   author = {Mazo, Robert M.}
    15916 }
    15917 @article{Deng2009,
    15918   number = {{10}},
    15919   year = {2009},
    15920   title = {{Effect of aberration on height calibration in three-dimensional localization-base microscoyp and particle tracking}},
    15921   pages = {{1886-1890}},
    15922   journal = {{Applied Optics}},
    15923   volume = {{48}},
    15924   author = {Deng, Yi. and Shaevitz, Joshua W.}
    15925 }
    15926 @article{Han2006,
    15927   year = {2006},
    15928   title = {{Brownian Motion of an Ellipsoid}},
    15929   journal = {{Science}},
    15930   volume = {{314}},
    15931   author = {Han, Y. and Alsayed, A.M. and Nobili, M. and Zhang, J. and Lubensky, T.C. and Yodh, A.G.}
    15932 }
    15933 @article{Dietrich2009,
    15934   year = {2009},
    15935   title = {Tethered Particle Motion Mediated by Scattering from Gold Nanoparticles and Darkfield Microscopy},
    15936   pages = {{031795}},
    15937   journal = {{Journal of Nanophotonics}},
    15938   volume = {{3}},
    15939   author = {Dietrich, Heidelinde R. C. and Rieger, Bernd and Wiertz, Frank G.M. and de Groote, Frederik H. and Heering, Hendrik A. and Young, Ian T. and Garini, Yuval}
    15940 }
    15941 @article{Shaevitz2007,
    15942   number = {{9}},
    15943   year = {2007},
    15944   title = {{Enhanced three-dimensional deconvolution microscopy using a measured depth-varying point-spread function}},
    15945   pages = {{2622-2627}},
    15946   journal = {{Journal of the Optical Society of America A}},
    15947   volume = {{24}},
    15948   author = {Shaevitz, Joshua W. and Fletcher, Daniel A.}
    15949 }
    15950 @book{Doi1986,
    15951   year = {1986},
    15952   title = {{The Theory of Polymer Dynamics}},
    15953   address = {{New York}},
    15954   publisher = {{Oxford University Press}},
    15955   author = {Doi, M. and Edwards, S.F. }
    15956 }
    15957 @article{Dhar2002,
    15958   number = {{6}},
    15959   year = {2002},
    15960   title = {{Triple Minima in the Free Energy of Semiflexible Polymers}},
    15961   pages = {{065502}},
    15962   journal = {{Physical Review Letters}},
    15963   volume = {{89}},
    15964   author = {Dhar, Abhishek and Chaudhuri, Debasish}
    15965 }
    15966 @article{Watkins2004,
    15967   number = {{6}},
    15968   year = {2004},
    15969   title = {{Information Bounsd and Optimal Analysis of Dynamic Single Molecule Measurements}},
    15970   pages = {{4015-4029}},
    15971   journal = {{Biophysical Journal}},
    15972   volume = {{86}},
    15973   author = {Watkins, Lucas P. and Yang, Haw}
    15974 }
    15975 @article{Elburg2007,
    15976   number = {{1}},
    15977   year = {2007},
    15978   title = {{Improved correction of axial geometrical distortion in index-mismatched fluorescent confocal microscopic images using high-aperture objective lenses}},
    15979   pages = {{45-54}},
    15980   journal = {{Journal of Microscopy}},
    15981   volume = {{228}},
    15982   author = {Elburg, H.J. van and Kuypers, L.C. and Decraemer, W.F. and Dirckx, J.J.J.}
    15983 }
    15984 @phdthesis{Li2006,
    15985   year = {2006},
    15986   title = {{DNA entropic elasticity for short molecules attached to beads}},
    15987   author = {Li, Jinyu and Nelson, Philip C. and Betterton, M.D.}
    15988 }
    15989 @book{Cohen1988,
    15990   series = {{Statistics: Textbooks and monographs}},
    15991   year = {1988},
    15992   title = {{Parameter estimation in reliability and life span models}},
    15993   volume = {{96}},
    15994   address = {{New York}},
    15995   publisher = {{Marcel Dekker, Inc}},
    15996   author = {Cohen, A. Clifford and Whitten, Betty Jones}
    15997 }
    15998 @article{Cocco2002,
    15999   year = {2002},
    16000   title = {{Theoretical models for single-molecule DNA and RNA experiments: from elasticity to unzipping}},
    16001   pages = {{569-584}},
    16002   journal = {{Comptes rendus de l'Academie des Sciences Physique}},
    16003   volume = {{3}},
    16004   author = {Cocco, S. and Marko, J.F. and Monasson, R.}
    16005 }
    16006 @article{Cocco2003,
    16007   year = {2003},
    16008   title = {{Force-extension behavior of folding polymers}},
    16009   pages = {{249-263}},
    16010   journal = {{The European Physical Journal E}},
    16011   volume = {{10}},
    16012   author = {Cocco, S. and Marko, J.F. and Monasson, R. and Sarkar, A. and Yan, J.}
    16013 }
    16014 @article{Hughes2001,
    16015   year = {2001},
    16016   title = {{DNA microarrays for expression profiling}},
    16017   pages = {{21-25}},
    16018   journal = {{Current Opinion in Chemical Biology}},
    16019   volume = {{5}},
    16020   author = {Hughes, Timothy R. and Shoemaker, Daniel D.}
    16021 }
    16022 @article{Tinland1997,
    16023   number = {{19}},
    16024   year = {1997},
    16025   title = {{Persistence Length of Single-Stranded DNA}},
    16026   pages = {{5763-5765}},
    16027   journal = {{Macromolecules}},
    16028   volume = {{30}},
    16029   author = {Tinland, Bernard and Pluen, Alain and Sturm, Jean and Weill, Gilbert}
    16030 }
    16031 @article{Massey1951,
    16032   year = {1951},
    16033   title = {{The Kolmogorov-Smirnov test for goodness of fit}},
    16034   pages = {{68-78}},
    16035   journal = {{Journal of the American Statistical Association}},
    16036   volume = {{46}},
    16037   author = {Massey, Frank J., Jr.}
    16038 }
    16039 @article{Burkhardt1993,
    16040   year = {1993},
    16041   title = {{Semiflexible polymer in the half plane and statistics of the integral of a Brownian curve}},
    16042   pages = {{L1157-L1162}},
    16043   journal = {{Journal of Physics A: Mathematical and General}},
    16044   volume = {{26}},
    16045   author = {Burkhardt, Theodore W.}
    16046 }
    16047 @article{Stepanow2002,
    16048   number = {{4}},
    16049   year = {2002},
    16050   title = {{The distribution function of a semiflexible polymer and random walks with constraints}},
    16051   pages = {{546-551}},
    16052   journal = {{Europhysics Letters (EPL)}},
    16053   volume = {{60}},
    16054   author = {Stepanow, S. and Sch\\\"utz, G. M.}
    16055 }
    16056 @article{Smith1992,
    16057   number = {{5085}},
    16058   year = {1992},
    16059   title = {{Direct Mechanical Measurement of the Elasticity of Single DNA Molecules by Using Magnetic Beads}},
    16060   pages = {{1122-1126}},
    16061   journal = {{Science}},
    16062   volume = {{258}},
    16063   author = {Smith, Steven B. and Finzi, Laura and Bustamante, Carlos}
    16064 }
    16065 @article{Bao2002,
    16066   number = {{8}},
    16067   year = {2002},
    16068   title = {{High-Sensitivity Detection of DNA Hybridization on Microarrays Using Resonance Light Scattering}},
    16069   pages = {{1792-1979}},
    16070   journal = {{Analytical Chemistry}},
    16071   volume = {{74}},
    16072   author = {Bao, Paul and Frutor, Anthony G. and Greef, Charles and Lahiri, Joydeep and Muller, Uwe and Peterson, Todd C. and Warden, Laurence and Xie, Xinying}
    16073 }
    16074 @article{Baumann1997,
    16075   year = {1997},
    16076   title = {{Ionic effects on the elasticity of single DNA molecules}},
    16077   pages = {{6185-6190}},
    16078   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16079   volume = {{94}},
    16080   author = {Baumann, Christoph G. and Smith, Steven B. and Bloomfield, Victor A. and Bustamante, Carlos}
    16081 }
    16082 @article{Vandenberg1991,
    16083   number = {{1}},
    16084   year = {1991},
    16085   title = {{Structure of 3-aminopropyl triethoxy silane on silicon oxide}},
    16086   pages = {{103-118}},
    16087   journal = {{Journal of Colloid and Interface Science}},
    16088   volume = {{147}},
    16089   author = {Vandenberg, Elaine T. and Bertilsson, Lars and Liedberg, Bo and Uvdal, Kajsa and Erlandsson, Ragnar and Elwing, Hans and Lundstrom, Ingemar}
    16090 }
    16091 @article{Blumberg2005,
    16092   year = {2005},
    16093   title = {{Three-Dimensional Characterization of Tethered Microspheres by Total Internal Reflection Fluorescence Microscopy}},
    16094   pages = {{1272-1281}},
    16095   journal = {{Biophysical Journal}},
    16096   volume = {{89}},
    16097   author = {Blumberg, Seth and Gajraj, Arivalagan and Pennington, Matthew W.}
    16098 }
    16099 @misc{Neumann2001,
    16100   month = {January 22, 2001},
    16101   year = {2001},
    16102   title = {{Entropic Elasticity of Weakly Perturbed Polymers}},
    16103   pages = {11},
    16104   publisher = {{The Energy Institute, The Pennsylvania State University}},
    16105   author = {Neumann, Richard M.}
    16106 }
    16107 @article{Ommering2010,
    16108   number = {{15}},
    16109   year = {2010},
    16110   title = {{Mobility and height detection of particle labels in an optical evanescent wave biosensor with single-label resolution}},
    16111   pages = {{155501}},
    16112   journal = {{Journal of Physics D: Applied Physics}},
    16113   volume = {{43}},
    16114   author = {van Ommering, Kim and Somers, Philip A. and Koets, Marjo and Schleipen, Jean J.H.B. and van Ijzendoorn, Leo J. and Prins, Menno W.J.}
    16115 }
    16116 @article{Heaton2001,
    16117   number = {{7}},
    16118   year = {2001},
    16119   title = {{Electrostatic surface plasmon resonance: Direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches}},
    16120   pages = {{3701-3704}},
    16121   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16122   volume = {{98}},
    16123   author = {Heaton, Richard J. and Peterson, Alexander W. and Georgiadis, Rosina M.}
    16124 }
    16125 @article{Gobush1972,
    16126   number = {{7}},
    16127   year = {1972},
    16128   title = {{Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior}},
    16129   pages = {{2839-2843}},
    16130   journal = {{The Journal of Chemical Physics}},
    16131   volume = {{57}},
    16132   author = {Gobush, William and Yamakawa, Hiromi and Stockmayer, W. H. and Magee, W. S.}
    16133 }
    16134 @article{Henderson2001,
    16135   number = {{4}},
    16136   year = {2001},
    16137   title = {{Exploring the Confidence Interval for a Binomial Parameter in a First Course in Statistical Computing}},
    16138   pages = {{337-344}},
    16139   journal = {{The American Statistician}},
    16140   volume = {{55}},
    16141   author = {Henderson, Michael and Meyer, Mary C.}
    16142 }
    16143 @article{Winkler1994,
    16144   number = {{9}},
    16145   year = {1994},
    16146   title = {{Models and equilibrium properties of stiff molecular chains}},
    16147   pages = {{8119-8129}},
    16148   journal = {{journal of Chemical Physics}},
    16149   volume = {{101}},
    16150   author = {Winkler, Roland G. and Reineker, Peter and Harnau, Ludger}
    16151 }
    16152 @article{William1972,
    16153   number = {{7}},
    16154   year = {1972},
    16155   title = {{Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior}},
    16156   pages = {{2839-2843}},
    16157   journal = {{The Journal of Chemical Physics}},
    16158   volume = {{57}},
    16159   author = {William, Gobush and Hiromi, Yamakawa and Stockmayer, W. H. and Magee, W. S.}
    16160 }
    16161 @article{Peterlinz1997,
    16162   year = {1997},
    16163   title = {{Observation of Hybridization and Dehybridization of Thiol-Tethered DNA Using Two-Color Surface Plasmon Resonance Spectroscopy}},
    16164   pages = {{3401-3402}},
    16165   journal = {{Journal of the American Chemical Society}},
    16166   volume = {{119}},
    16167   author = {Peterlinz, Kevin A. and Georgiadis, Rosina M. and Herne, Tonya M. and Tarlov, Michael J.}
    16168 }
    16169 @article{Morriss2010,
    16170   number = {{3}},
    16171   year = {2010},
    16172   title = {{A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality}},
    16173   pages = {{035105}},
    16174   journal = {{The Journal of Chemical Physics}},
    16175   volume = {{132}},
    16176   author = {Morriss-Andrews, Alex and Rottler, Joerg and Plotkin, Steven S.}
    16177 }
    16178 @article{Chandrasekhar1943,
    16179   number = {{1}},
    16180   year = {1943},
    16181   title = {{Stochastic Problems in Physics and Astronomy}},
    16182   pages = {{2-87}},
    16183   journal = {{Revieuws of Modern Physics}},
    16184   volume = {{15}},
    16185   author = {Chandrasekhar, S.}
    16186 }
    16187 @inproceedings{Ram2005,
    16188   series = {{Proceedings of SPIE}},
    16189   year = {2005},
    16190   title = {{How accurately can a single molecule be localized in three dimensions using a fluorescence microscope?}},
    16191   booktitle = {{Imaging, Manipulation and Analysis of Biomolecule and Cells: Fundamentals and Applications III}},
    16192   pages = {426-435},
    16193   volume = {{5699}},
    16194   author = {Ram, Sripad and Ward, E. Sally and Ober, Raimond J.}
    16195 }
    16196 @book{Papoulis1991,
    16197   series = {{McGraw-Hill series in electrical engineering, Communications and signal processing}},
    16198   edition = {{Third edition}},
    16199   year = {1991},
    16200   title = {{Probability, random variables, and stochastic processes}},
    16201   address = {{Singapore}},
    16202   publisher = {{McGraw-Hill}},
    16203   author = {Papoulis, Athanasios}
    16204 }
    16205 @inproceedings{Ram2007,
    16206   year = {2007},
    16207   title = {{A novel approach to determining the three-dimensional location of microscopic objects with applications to 3D particle tracking}},
    16208   booktitle = {{Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIV}},
    16209   pages = {64430D},
    16210   editor = {Conchello, Jose-Angel and Cogswell, Carol J. and Wilson, Tony},
    16211   volume = {{6443}},
    16212   publisher = {{Proceedings of SPIE}},
    16213   author = {Ram, Sripad and Chao, Jerry and Prabhat, Prashant and Ward, E. Sally and Ober, Raimond J.}
    16214 }
    16215 @article{Wu2005,
    16216   year = {2005},
    16217   title = {{Three-dimensional fluorescent particle tracking at micron-scale using a single camera}},
    16218   pages = {{461-465}},
    16219   journal = {{Experiments in Fluids}},
    16220   volume = {{38}},
    16221   author = {Wu, Mingming and Roberts, John W. and Buckley, Mark}
    16222 }
    16223 @article{Maier2000,
    16224   number = {{22}},
    16225   year = {2000},
    16226   title = {{Replication by a single DNA polymerase of a stretched single-stranded DNA}},
    16227   pages = {{12002-12007}},
    16228   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16229   volume = {{97}},
    16230   author = {Maier, Berenike and Bensimon, David and Croquette, Vincent}
    16231 }
    16232 @misc{Odijk2005,
    16233   month = {August 4, 2005},
    16234   year = {2005},
    16235   title = {{Note on DNA grafted to a surface (experiments Heidi Dietrich, TU Delft)}},
    16236   author = {Odijk, Theo}
    16237 }
    16238 @article{Zimm1956,
    16239   number = {{2}},
    16240   year = {1956},
    16241   title = {{Dynamics of Polymer Molecules in Dilute Solution: Viscoelasticity, Flow Birefringence and Dielectric Loss}},
    16242   pages = {{269-278}},
    16243   journal = {{The Journal of Chemical Physics}},
    16244   volume = {{24}},
    16245   author = {Zimm, Bruno H.}
    16246 }
    16247 @article{Sadr2007,
    16248   year = {2007},
    16249   title = {{Diffusion-induced bias in near-wall velocimetry}},
    16250   pages = {{443-456}},
    16251   journal = {{Journal of Fluid Mechanics}},
    16252   volume = {{577}},
    16253   author = {Sadr, Reza and Hohenegger, Christel and Li, Haifeng and Mucha, Peter J. and Yoda, Minami}
    16254 }
    16255 @article{Qian2000b,
    16256   number = {{1}},
    16257   year = {2000},
    16258   title = {{Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials}},
    16259   pages = {{137-143}},
    16260   journal = {{Biophysical Journal}},
    16261   volume = {{79}},
    16262   author = {Qian, Hong}
    16263 }
    16264 @article{Pirrung2002,
    16265   number = {{8}},
    16266   year = {2002},
    16267   title = {{How to Make a DNA Chip}},
    16268   pages = {{1276-1289}},
    16269   journal = {{Angewandte Chemie International Edition}},
    16270   volume = {{41}},
    16271   author = {Pirrung, Michael C.}
    16272 }
    16273 @article{Marko2003,
    16274   number = {{3}},
    16275   year = {2003},
    16276   title = {{The micromechanics of DNA}},
    16277   journal = {{Physics World}},
    16278   volume = {{16}},
    16279   author = {Marko, John F. and Cocco, Simona}
    16280 }
    16281 @article{Qian2000a,
    16282   number = {{4}},
    16283   year = {2000},
    16284   title = {{A mathematical analysis for the Brownian dynamics of a DNA tether}},
    16285   pages = {{331-340}},
    16286   journal = {{Journal of Mathematical Biology}},
    16287   volume = {{41}},
    16288   author = {Qian, Hong}
    16289 }
    16290 @misc{Marko2005,
    16291   month = {June 2, 2005},
    16292   year = {2005},
    16293   title = {{Introduction to Single-DNA Micromechanics}},
    16294   pages = {63},
    16295   publisher = {{Department of Physics, University of Illinois at Chicago}},
    16296   author = {Marko, J.F.}
    16297 }
    16298 @article{Schaefer1980,
    16299   number = {{5}},
    16300   year = {1980},
    16301   title = {{Dynamics of Semiflexible Polymers in Solution}},
    16302   pages = {{1280-1289}},
    16303   journal = {{Macromolecules}},
    16304   volume = {{13}},
    16305   author = {Schaefer, D.W. and Joanny, J.F. and Pincus, P.}
    16306 }
    16307 @article{Zurla2006,
    16308   year = {2006},
    16309   title = {{Novel tethered particle motion analysis of CI protein-mediated DNA looping in the regulation of bacteriophage lambda}},
    16310   pages = {{S225-S234}},
    16311   journal = {{Journal of Physics: Condensed Matter}},
    16312   volume = {{18}},
    16313   author = {Zurla, C. and Franzini, A. and Galli, G. and Dunlap, D. D. and Lewis, D. E. A. and Adhya, S. and Finzi, L.}
    16314 }
    16315 @article{Prabhat2007,
    16316   number = {{14}},
    16317   year = {2007},
    16318   title = {{Elucidation of intracellular recycling pathways leading to exocytosis of the Fc receptor, FcRn, by using multifocal plane microscopy}},
    16319   pages = {{5889-5894}},
    16320   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16321   volume = {{104}},
    16322   author = {Prabhat, Prashant and Gan, Zhuo and Chao, Jerry and Ram, Sripad and Vaccaro, Carlos and Gibbons, Steven and Ober, Raimond J. and Ward, E. Sally}
    16323 }
    16324 @inproceedings{Prabhat2006,
    16325   year = {2006},
    16326   title = {{Simultaneous imaging of several focal planes in fluorescence microscopy for the study of cellular dynamics in 3D}},
    16327   booktitle = {{Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIII}},
    16328   pages = {60900L},
    16329   editor = {Conchello, Jose-Angel and Cogswell, Carol J. and Wilson, Tony},
    16330   volume = {{6090}},
    16331   publisher = {{Proceedings of SPIE}},
    16332   author = {Prabhat, Prashant and Ram, Sripad and Ward, E. Sally and Ober, Raimond J.}
    16333 }
    16334 @article{Marko1994,
    16335   number = {{5171}},
    16336   year = {1994},
    16337   title = {{Fluctuations and Supercoiling of DNA}},
    16338   pages = {{506-508}},
    16339   journal = {{Science}},
    16340   volume = {{265}},
    16341   author = {Marko, John F. and Siggia, Eric D.}
    16342 }
    16343 @article{Marko1995,
    16344   number = {{26}},
    16345   year = {1995},
    16346   title = {{Stretching DNA}},
    16347   pages = {{8759-8770}},
    16348   journal = {{Macromolecules}},
    16349   volume = {{28}},
    16350   author = {Marko, John F. and Siggia, Eric D.}
    16351 }
    16352 @article{Winkler1992,
    16353   number = {{24}},
    16354   year = {1992},
    16355   title = {{Finitie Size Distribution and Partition Functions of Gaussian Chains: Maximum Entropy Approach}},
    16356   pages = {{6891-6896}},
    16357   journal = {{Macromolecules}},
    16358   volume = {{25}},
    16359   author = {Winkler, R.G. and Reineker, P.}
    16360 }
    16361 @article{Berciaud2005,
    16362   number = {{3}},
    16363   year = {2005},
    16364   title = {{Observation of Intrinsic Size Effects in the Optical Response of Individual Gold Nanoparticles}},
    16365   pages = {{515-518}},
    16366   journal = {{Nano Letters}},
    16367   volume = {{5}},
    16368   author = {Berciaud, St\\\'ephane and Cognet, Laurent and Tamarat, Philippe and Lounis, Brahim}
    16369 }
    16370 @article{Lahtinen2001,
    16371   year = {2001},
    16372   title = {{Diffusion of hard disks and rodlike molecules on surfaces}},
    16373   journal = {{Physical Review E}},
    16374   volume = {{64}},
    16375   author = {Lahtinen, J.M. and Hjelt, T. and Ala-Nissila, T. and Chvoj, Z.}
    16376 }
    16377 @article{Wong2006,
    16378   number = {{25}},
    16379   year = {2006},
    16380   title = {{The effect of integration time on fluctuation measurements: calibrating an optical trap in the presence of motion blur}},
    16381   pages = {{12517-12531}},
    16382   journal = {{Optics Express}},
    16383   volume = {{14}},
    16384   author = {Wong, Wesley P. and Halvorsen, Ken}
    16385 }
    16386 @article{Perkins1994,
    16387   year = {1994},
    16388   title = {{Relaxation of a Single DNA Molecule Observed by Optical Microscopy}},
    16389   pages = {{822-826}},
    16390   journal = {{Science}},
    16391   volume = {{264}},
    16392   author = {Perkins, Thomas T. and Quake, Stephern R. and Smith, Douglas E. and Chu, Steven}
    16393 }
    16394 @article{Lu2002,
    16395   year = {2002},
    16396   title = {{DNA Persistencde Length Revisited}},
    16397   pages = {{261-275}},
    16398   journal = {{Biopolymers}},
    16399   volume = {{61}},
    16400   author = {Lu, Yongjun and Weers, Brock and Stellwagen, Nancy C.}
    16401 }
    16402 @article{Laurens2009,
    16403   year = {2009},
    16404   title = {{Dissecting protein-induced DNA looping dynamics in real time}},
    16405   journal = {{Nucleic Acids Research}},
    16406   author = {Laurens, Niels and Bellamy, Stuart R. W. and Harms, August F. and Kovacheva, Yana S. and Halford, Stephen F. and Wuite, Gijs J. L.}
    16407 }
    16408 @article{Yguerabide1998b,
    16409   year = {1998},
    16410   title = {{Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. II. Experimental Characterization}},
    16411   pages = {{157-176}},
    16412   journal = {{Analytical Biochemistry}},
    16413   volume = {{262}},
    16414   author = {Yguerabide, Juan and Yguerabide, Evangelina E.}
    16415 }
    16416 @article{Capitanio2004,
    16417   year = {2004},
    16418   title = {{Exploring Molecular Motors and Switches at the Single-Molecule Level}},
    16419   pages = {{194-204}},
    16420   journal = {{Microscopy Research and Technique}},
    16421   volume = {{65}},
    16422   author = {Capitanio, M. and Vanzi, F. and Broggio, C. and Cicchi, R. and Normanno, D. and Romano, G. and Sacconi, L. and Pavone, F.S.}
    16423 }
    16424 @article{Sheppard2004,
    16425   number = {{22}},
    16426   year = {2004},
    16427   title = {{Annular pupils, radial polarization, and superresolution}},
    16428   pages = {{4322-4327}},
    16429   journal = {{Applied Optics}},
    16430   volume = {{43}},
    16431   author = {Sheppard, Colin J.R.}
    16432 }
    16433 @article{Zhu2006,
    16434   number = {{5}},
    16435   year = {2006},
    16436   title = {{Direct Numerical Simulation of Single-Molecule DNA by Cable Dynamics}},
    16437   pages = {{1078-1087}},
    16438   journal = {{Journal of Microelectromechanical Systems}},
    16439   volume = {{15}},
    16440   author = {Zhu, Qiang and Zeng, Jun and Triantafyllou, Michael S. and Yue, Dick K.P.}
    16441 }
    16442 @article{Strick1998,
    16443   year = {1998},
    16444   title = {{Behavior of Supercoiled DNA}},
    16445   pages = {{2016-2028}},
    16446   journal = {{Biophysical Journal}},
    16447   volume = {{74}},
    16448   author = {Strick, T.R. and Allemand, J.-F. and Bensimon, D. and Croquette, V.}
    16449 }
    16450 @article{Pouget2004,
    16451   number = {{9}},
    16452   year = {2004},
    16453   title = {{Single-particle tracking for DNA tether length monitoring}},
    16454   journal = {{Nucleic Acids Research}},
    16455   volume = {{32}},
    16456   author = {Pouget, Noelle and Dennis, Cynthia and Turlan, Catherine and Grigoriev, Mikhail and Chandler, Michael and Salome, Laurence}
    16457 }
    16458 @article{Saito1967,
    16459   number = {{1}},
    16460   year = {1967},
    16461   title = {{The Statistical Mechanical Theory of Stiff Chains}},
    16462   pages = {{219-226}},
    16463   journal = {{Journal of the Physical Society of Japan}},
    16464   volume = {{22}},
    16465   author = {Saito, Nobuhiko and Takahashi, Kunihiko and Yunoki, Yasuo}
    16466 }
    16467 @article{Smith1996,
    16468   number = {{5250}},
    16469   year = {1996},
    16470   title = {{Overstretching B-DNA: The Elastic Response of Individual Double-Stranded and Single-Stranded DNA Molecules}},
    16471   pages = {{795-799}},
    16472   journal = {{Science}},
    16473   volume = {{271}},
    16474   author = {Smith, Steven B. and Cui, Yujia and Bustamante, Carlos}
    16475 }
    16476 @article{Roeffaers2007,
    16477   number = {{31}},
    16478   year = {2007},
    16479   title = {{Single-molecule fluorescence spectroscopy in (bio)catalysis}},
    16480   pages = {{12603-12609}},
    16481   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16482   volume = {{104}},
    16483   author = {Roeffaers, Maarten B.J. and De Cremer, Gert and Uji-i, Hiroshi and Muls, Beniot and Sels, Bert F. and Jacobs, Pierre A. and De Schryver, Frans C. and De Vos, Dirk E. and Hofkens, Johan}
    16484 }
    16485 @book{Pluta1989,
    16486   year = {1989},
    16487   title = {{Advanced Light Microscopy}},
    16488   volume = {{2: Specialized Methods}},
    16489   address = {{Amsterdam}},
    16490   publisher = {{Elsevier}},
    16491   author = {Pluta, Maksymilian}
    16492 }
    16493 @book{Pluta1988,
    16494   year = {1988},
    16495   title = {{Advanced Light Microscopy}},
    16496   volume = {{1: Principles and Basic Properties}},
    16497   address = {{Amsterdam}},
    16498   publisher = {{Elsevier}},
    16499   author = {Pluta, Maksymilian}
    16500 }
    16501 @article{Broek2006,
    16502   number = {{1}},
    16503   year = {2006},
    16504   title = {{Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI}},
    16505   pages = {{167-174}},
    16506   journal = {{Nucleic Acids Research}},
    16507   volume = {{34}},
    16508   author = {Broek, Bram van den and Vanzi, Francesco and Normanno, Davide and Pavone, Francesco S. and Wuite, Gijs J. L.}
    16509 }
    16510 @article{Braslavsky2003,
    16511   number = {{7}},
    16512   year = {2003},
    16513   title = {{Sequence Information can be Obtained from Single DNA Molecules}},
    16514   pages = {{3960-3964}},
    16515   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16516   volume = {{100}},
    16517   author = {Braslavsky, Ido and Hebert, Benedict and Kartalov, Emil and Quake, Stephern R.}
    16518 }
    16519 @article{Ariel2003,
    16520   number = {{1}},
    16521   year = {2003},
    16522   title = {{Persistence length of a strongly charged rodlike polyelectrolyte in the presence of salt}},
    16523   pages = {{011805-1-011805-11}},
    16524   journal = {{Physical Review E}},
    16525   volume = {{67}},
    16526   author = {Ariel, Gil and Andelman, David}
    16527 }
    16528 @article{Yamakawa1972,
    16529   number = {{7}},
    16530   year = {1972},
    16531   title = {{Statistical Mechanics of Wormlike Chains. II. Excluded Volume Effects}},
    16532   pages = {{2843-2854}},
    16533   journal = {{The Journal of Chemical Physics}},
    16534   volume = {{57}},
    16535   author = {Yamakawa, Hiromi and Stockmayer, W. H.}
    16536 }
    16537 @article{Davidson1995,
    16538   year = {1995},
    16539   title = {{Arrays of Uniform Latex Spheres as Test Objects in Optical Microscopy}},
    16540   pages = {{173-178}},
    16541   journal = {{Particle and Particle Systems Characterization}},
    16542   volume = {{12}},
    16543   author = {Davidson, John A.}
    16544 }
    16545 @article{Huisken2004,
    16546   number = {{5686}},
    16547   year = {2004},
    16548   title = {{Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy}},
    16549   pages = {{1007-1009}},
    16550   journal = {{Science}},
    16551   volume = {{305}},
    16552   author = {Huisken, Jan and Swoger, Jim and Del Bene, Filippo and Wittbrodt, Joachim and Stelzer, Ernst H. K.}
    16553 }
    16554 @article{Goldman1967,
    16555   number = {{4}},
    16556   year = {1967},
    16557   title = {{Slow viscous motion of a sphere parallel to a plane wall - I Motion through a quiescent fluid}},
    16558   pages = {{637-651}},
    16559   journal = {{Chemical Engineering Science}},
    16560   volume = {{22}},
    16561   author = {Goldman, A.J. and Cox, R.G. and Brenner, H.}
    16562 }
    16563 @article{Maher2007,
    16564   year = {2007},
    16565   title = {{Spring theory}},
    16566   pages = {{984-986}},
    16567   journal = {{Nature}},
    16568   volume = {{448}},
    16569   author = {Maher, Brendan}
    16570 }
    16571 @article{Cui2008,
    16572   number = {{31}},
    16573   year = {2008},
    16574   title = {{Lensless high-resolution on-chip optrofluidic microscopes for Caenorhabditis elegans and cell imaging}},
    16575   pages = {{10670-10675}},
    16576   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16577   volume = {{105}},
    16578   author = {Cui, Xiquan and Lee, Lap Man and Heng, Xin and Zhong, Weiwei and Sternberg, Paul W. and Psaltis, Demetri and Yang, Changhuei}
    16579 }
    16580 @article{Hagerman1988,
    16581   year = {1988},
    16582   title = {{Flexibility of DNA}},
    16583   pages = {{265-286}},
    16584   journal = {{Annual Review of Biophysics and BioEngineering}},
    16585   volume = {{17}},
    16586   author = {Hagerman, P.J.}
    16587 }
    16588 @article{Vanzi2006,
    16589   number = {{12}},
    16590   year = {2006},
    16591   title = {{Lac repressor hinge flexibility and DNA looping: single molecule kinetics by tethered particle motion}},
    16592   pages = {{3409-3420}},
    16593   journal = {{Nucleic Acids Research}},
    16594   volume = {{34}},
    16595   author = {Vanzi, Francesco and Broggio, Chiara and Sacconi, Leonardo and Pavone, Francesco Saverio}
    16596 }
    16597 @article{Bronstein2009,
    16598   number = {{1}},
    16599   year = {2009},
    16600   title = {{Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells}},
    16601   pages = {{018102}},
    16602   journal = {{Physical Review Letters}},
    16603   volume = {{103}},
    16604   author = {Bronstein, I. and Israel, Y. and Kepten, E. and Mai, S. and Shav-Tal, Y. and Barkai, E. and Garini, Y.}
    16605 }
    16606 @article{Bawendi1985,
    16607   number = {{5}},
    16608   year = {1985},
    16609   title = {{A Wiener integral model for stiff polymer chains}},
    16610   pages = {{2491}},
    16611   journal = {{Journal of Chemical Physics}},
    16612   volume = {{83}},
    16613   author = {Bawendi, M.G. and Freed, Karl F.}
    16614 }
    16615 @article{Martin2002,
    16616   number = {{4}},
    16617   year = {2002},
    16618   title = {{Apparent Subdiffusion Inherent to Single Particle Tracking}},
    16619   pages = {{2109-2117}},
    16620   journal = {{Biophysical Journal}},
    16621   volume = {{83}},
    16622   author = {Martin, Douglas S. and Forstner, Martin B. and K\\\"as, Josef A.}
    16623 }
    16624 @article{Savelkoul2006,
    16625   number = {{1}},
    16626   year = {2006},
    16627   title = {{Detection of Mycobacterium tuberculosis complex with Real Time PCR: Comparison of different primer-probe sets based on the IS6110 element}},
    16628   pages = {{177-180}},
    16629   journal = {{Journal of Microbiological Methods}},
    16630   volume = {{66}},
    16631   author = {Savelkoul, Paul H.M. and Catsburg, Arnold and Mulder, Sije and Oostendorp, Ludo and Schirm, Jurjen and Wilke, Hans and van der Zanden, Adri G.M. and Noordhoek, Gerda T.}
    16632 }
    16633 @article{Bustamante2000,
    16634   number = {{3}},
    16635   year = {2000},
    16636   title = {{Single-molecule studies of DNA mechanics}},
    16637   pages = {{279-285}},
    16638   journal = {{Current Opinion in Structural Biology}},
    16639   volume = {{10}},
    16640   author = {Bustamante, Carlos and Smith, Steven B. and Liphardt, Jan and Smith, Doug}
    16641 }
    16642 @article{Bustamante2003,
    16643   year = {2003},
    16644   title = {{Ten years of tension: single-molecule DNA mechanics}},
    16645   pages = {{423-427}},
    16646   journal = {{Nature}},
    16647   volume = {{421}},
    16648   author = {Bustamante, Carlos and Bryant, Zev and Smith, Steven B.}
    16649 }
    16650 @article{Holtzer2007,
    16651   year = {2007},
    16652   title = {{Nanometric three-dimensional tracking of individual quantom dots in cells}},
    16653   pages = {{053902}},
    16654   journal = {{Applied Physics Letters}},
    16655   volume = {{90}},
    16656   author = {Holtzer, L. and Meckel, T. and Schmidt, T.}
    16657 }
    16658 @article{Huang2008,
    16659   year = {2008},
    16660   title = {Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy},
    16661   pages = {810-813},
    16662   journal = {Science},
    16663   volume = {319},
    16664   author = {Huang, B. and Wang, W. and Bates, M. and Zhuang, X.}
    16665 }
    16666 @article{Lindner2009,
    16667   year = {2009},
    16668   title = {{Studies of Single Molecules in their Natural Form}},
    16669   pages = {{283-291}},
    16670   journal = {{Israel Journal of Chemistry}},
    16671   volume = {{49}},
    16672   author = {Lindner, Moshe and Nir, Guy and Dietrich, Heidelinde R. C. and Young, Ian T. and Tauber, Elad and Bronshtein, I. and Altman, Liat and Garini, Yuval}
    16673 }
    16674 @article{Wilhelm1996,
    16675   number = {{12}},
    16676   year = {1996},
    16677   title = {{Radial Distribution Function of Semiflexible Polymers}},
    16678   pages = {{2581}},
    16679   journal = {{Physical Review Letters}},
    16680   volume = {{77}},
    16681   author = {Wilhelm, Jan and Frey, Erwin}
    16682 }
    16683 @article{Clercx1992,
    16684   number = {{4}},
    16685   year = {1992},
    16686   title = {{Brownian particles in shear flow and harmonic potentials: A study of long-time tails}},
    16687   pages = {{1942-1950}},
    16688   journal = {{Physical Review A}},
    16689   volume = {{46}},
    16690   author = {Clercx, H.J.H. and Schram, P.P.J.M.}
    16691 }
    16692 @inproceedings{Subotic2004,
    16693   year = {2004},
    16694   title = {{On the Feasability of Axial Tracking of a Fluorescent Nano-Particle Using a Defocusing Model}},
    16695   booktitle = {{Proceedings IEEE International Symposium on Biomedical Imaging: From Macro to Nano}},
    16696   pages = {1231-1234},
    16697   volume = {{2}},
    16698   author = {Subotic, Nadja and van de Ville, Dimitri and Unser, Michael}
    16699 }
    16700 @article{Ebenstein2009,
    16701   number = {{4}},
    16702   year = {2009},
    16703   title = {Lighting Up Individual {DNA} Binding Proteins with Quantum Dots},
    16704   pages = {{1598-1603}},
    16705   journal = {{Nano Letters}},
    16706   volume = {{9}},
    16707   author = {Ebenstein, Y. and Gassman, N. and Kim, S. and Antelman, J. and Kim, Y. and Ho, S. and Samuel, R. and Michalet, X. and Weiss, S.}
    16708 }
    16709 @article{Harlepp2004,
    16710   number = {{17}},
    16711   year = {2004},
    16712   title = {{Subnanometric measurements of evanescent wave penetration depth using total internal reflection microscopy combined with fluorescent correlation spectroscopy}},
    16713   journal = {{Applied Physics Letters}},
    16714   volume = {{85}},
    16715   author = {Harlepp, S. and Robert, J. and Darnton, N.C. and Chateney, D.}
    16716 }
    16717 @inproceedings{Nguyen2000,
    16718   year = {2000},
    16719   title = {{Magnification Corrected Optical Image Splitting for Simultaneous Multiplanar Acquisition}},
    16720   booktitle = {{Optical Diagnostics of Living Cells III}},
    16721   pages = {31-40},
    16722   editor = {Farkas, Daniel L. and Leif, Robert C.},
    16723   volume = {{3921}},
    16724   publisher = {{Proceedings of SPIE}},
    16725   author = {Nguyen, Lam K. and Bravo-Zanoguera, Miguel and Kellner, Albert L. and Price, Jeffrey H.}
    16726 }
    16727 @article{Braslavsky2001,
    16728   number = {{31}},
    16729   year = {2001},
    16730   title = {{Objective-type dark-field illumination for scattering from microbeads}},
    16731   pages = {{5650-5667}},
    16732   journal = {{Applied Optics}},
    16733   volume = {{40}},
    16734   author = {Braslavsky, Ido and Amit, Roee and Jaffar Ali, B.M. and Gileadi, Opher and Oppenheim, Amos and Stavans, Joel}
    16735 }
    16736 @article{Stepanow2004,
    16737   number = {{4}},
    16738   year = {2004},
    16739   title = {{Statistical mechanics of semiflexible polymers}},
    16740   pages = {{499-512}},
    16741   journal = {{The European Physical Journal B}},
    16742   volume = {{39}},
    16743   author = {Stepanow, S.}
    16744 }
    16745 @article{Gelles1988,
    16746   number = {{6155}},
    16747   year = {1988},
    16748   title = {{Tracking kinesin-driven movements with nanometric-scale precision}},
    16749   pages = {{450-453}},
    16750   journal = {{Nature}},
    16751   volume = {{331}},
    16752   author = {Gelles, Jeff and Schnapp, Bruce J. and Sheetz, Michael P.}
    16753 }
    16754 @book{Rubinstein2006,
    16755   year = {2006},
    16756   title = {{Polymer Physics}},
    16757   address = {{New York}},
    16758   publisher = {{Oxford University Press Inc.}},
    16759   author = {Rubinstein, Michael and Colby, Ralph H.}
    16760 }
    16761 @article{Seol2007,
    16762   number = {{12}},
    16763   year = {2007},
    16764   title = {{Elasticity of Short DNA Molecules: Theory and Experiment for Contour Lengths of 0.6-7 um}},
    16765   pages = {{4360-4373}},
    16766   journal = {{Biophysical Journal}},
    16767   volume = {{93}},
    16768   author = {Seol, Yeonee and Li, Jinyu and Nelson, Philip C. and Perkins, Thomas T. and Betterton, M.D.}
    16769 }
    16770 @article{Cohen2007,
    16771   number = {{31}},
    16772   year = {2007},
    16773   title = {{Principle-component analysis of shape fluctuations of single DNA molecules}},
    16774   pages = {{12622-12627}},
    16775   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16776   volume = {{104}},
    16777   author = {Cohen, Adam E. and Moerner, W.E.}
    16778 }
    16779 @article{Saxton2007,
    16780   number = {{4}},
    16781   year = {2007},
    16782   title = {{A Biological Interpretation of Transient Anomalous Subdiffusion. I. Qualitative Model}},
    16783   pages = {{1178-1191}},
    16784   journal = {{Biophysical Journal}},
    16785   volume = {{92}},
    16786   author = {Saxton, Michael J.}
    16787 }
    16788 @article{Otto1994,
    16789   number = {{3}},
    16790   year = {1994},
    16791   title = {{Persistence lengths of semiflexible chains - Methods and approximations}},
    16792   pages = {{543-555}},
    16793   journal = {{Macromolecular Theory and Simulations}},
    16794   volume = {{3}},
    16795   author = {Otto, Matthias and Eckert, Jochen and Vilgis, Thomas A.}
    16796 }
    16797 @article{Vennemann2007,
    16798   number = {{3}},
    16799   year = {2007},
    16800   title = {{In vivo whole-field blood velocity measurement techniques}},
    16801   pages = {{495-511}},
    16802   journal = {{Experiments in Fluids}},
    16803   volume = {{42}},
    16804   author = {Vennemann, Peter and Lindken, Ralph and Westerweel, Jerry}
    16805 }
    16806 @article{Vosch2007,
    16807   number = {{31}},
    16808   year = {2007},
    16809   title = {{Strongly emissive individual DNA-encapsulated Ag nanoclusters as single-molecule fluorophores}},
    16810   pages = {{12616-12621}},
    16811   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16812   volume = {{104}},
    16813   author = {Vosch, Tom and Antoku, Yasuko and Hsiang, Jung-Cheng and Richards, Chris I. and Gonzalez, Jose I. and Dickson, Robert M.}
    16814 }
    16815 @article{Galletto2006,
    16816   number = {{7113}},
    16817   year = {2006},
    16818   title = {{Direct observation of individual RecA filaments assembling on single DNA molecules}},
    16819   pages = {{875-878}},
    16820   journal = {{Nature}},
    16821   volume = {{443}},
    16822   author = {Galletto, Roberto and Amitani, Ichiro and Baskin, Ronald J. and Kowalczykowski, Stephen C.}
    16823 }
    16824 @article{Singh-Zocchi2003,
    16825   number = {{13}},
    16826   year = {2003},
    16827   title = {{Single-molecule detection of DNA hybridization}},
    16828   pages = {{7605-7610}},
    16829   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16830   volume = {{100}},
    16831   author = {Singh-Zocchi, Mukta and Dixit, Sanhita and Ivanov, Vassili and Zocchi, Giovanni}
    16832 }
    16833 @article{Frej1993,
    16834   number = {{9}},
    16835   year = {1993},
    16836   title = {{Hindered diffusion of a single sphere very near a wall in a nonuniform force field}},
    16837   pages = {{7552-7564}},
    16838   journal = {{Journal of Chemical Physics}},
    16839   volume = {{98}},
    16840   author = {Frej, Nasser A. and Prieve, Dennis C.}
    16841 }
    16842 @article{Lagowski1991,
    16843   number = {{2}},
    16844   year = {1991},
    16845   title = {{Stiff chain model-functional integral approach}},
    16846   pages = {{1266-1296}},
    16847   journal = {{Journal of Chemical Physics}},
    16848   volume = {{95}},
    16849   author = {Lagowski, Jolanta B. and Noolandi, Jaan and Nickel, Bernie}
    16850 }
    16851 @article{Bednar1995,
    16852   number = {{4}},
    16853   year = {1995},
    16854   title = {{Determination of DNA Persistence Length by Cryo-electron Microscopy. Separation of the Static and Dynamic Contributions to the Apparent Persistence Length of DNA}},
    16855   pages = {{579-594}},
    16856   journal = {{Journal of Molecular Biology}},
    16857   volume = {{254}},
    16858   author = {Bednar, Jan and Furrer, Patrick and Katritch, Vsevolod and Stasiak, Alicja Z. and Dubochet, Jacques and Stasiak, Andrzej}
    16859 }
    16860 @article{McIntosh2009,
    16861   number = {{4}},
    16862   year = {2009},
    16863   title = {{Detailed scaling analysis of low-force polyelectrolyte elasticity}},
    16864   pages = {{041803}},
    16865   journal = {{Physical Review E}},
    16866   volume = {{80}},
    16867   author = {McIntosh, D.B. and Ribeck, N. and Saleh, O.A.}
    16868 }
    16869 @article{Hyeon2006b,
    16870   number = {{3}},
    16871   year = {2006},
    16872   title = {{Size, shape, and flexibility of RNA structures}},
    16873   pages = {{194905}},
    16874   journal = {{The Journal of Chemical Physics}},
    16875   volume = {{125}},
    16876   author = {Hyeon, Changbong and Dima, Ruxandra I. and Thirumalai, D.}
    16877 }
    16878 @article{Caarls2011,
    16879   number = {1},
    16880   year = {2011},
    16881   title = {{Minimizing light exposure with the programmable array microscope}},
    16882   pages = {101-110},
    16883   journal = {{Journal of Microscopy}},
    16884   volume = {241},
    16885   author = {Caarls, W. and Rieger, B and de Vries, A.H.B. and Arndt-Jovin, D.J. and Jovin, T.M.}
    16886 }
    16887 @article{Jacobsen2006,
    16888   number = {{1}},
    16889   year = {2006},
    16890   title = {{Interferometric optical detection and tracking of very small gold nanoparticles at a water-glass interface}},
    16891   pages = {{405}},
    16892   journal = {{Optics Express}},
    16893   volume = {{14}},
    16894   author = {Jacobsen, Volker and Stoller, Patrick and Brunner, Christian and Vogel, Viola and Sandoghdar, Vahid}
    16895 }
    16896 @article{Crut2007,
    16897   number = {{29}},
    16898   year = {2007},
    16899   title = {{Fast dynamics of supercoiled DNA revealed by single-molecule experiments}},
    16900   pages = {{11957-11962}},
    16901   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16902   volume = {{104}},
    16903   author = {Cut, Aur\\\'elien and Koster, Daniel A. and Seidel, Ralf and Wiggins, Chris H. and Dekker, Nynke H.}
    16904 }
    16905 @article{Yguerabide1998a,
    16906   year = {1998},
    16907   title = {{Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. I. Theory}},
    16908   pages = {{137-156
    16909  }},
    16910   journal = {{Analytical Biochemistry}},
    16911   volume = {{262}},
    16912   author = {Yguerabide, Juan and Yguerabide, Evangelina E.}
    16913 }
    16914 @article{Strick1998b,
    16915   number = {{3-4}},
    16916   year = {1998},
    16917   title = {{Physical Approaches to the Study of DNA}},
    16918   pages = {{647-672}},
    16919   journal = {{Journal of Statistical Physics}},
    16920   volume = {{93}},
    16921   author = {Strick, T.R. and Allemand, J.-F. and Croquette, V. and Bensimon, D.}
    16922 }
    16923 @article{Rechendorff2009,
    16924   number = {{9}},
    16925   year = {2009},
    16926   title = {{Persistence length and scaling properties of single-stranded DNA adsorbed on modified graphite}},
    16927   pages = {{095103}},
    16928   journal = {{Journal of Chemical Physics}},
    16929   volume = {{131}},
    16930   author = {Rechendorff, Kristian and Witz, Guillaume and Adamcik, Jozef and Dietler, Giovanni}
    16931 }
    16932 @article{Graff2006,
    16933   number = {{1}},
    16934   year = {2006},
    16935   title = {{Resonance Light Scattering (RLS) Detection of Nanoparticle Separations in a Microelectrical Field-Flow Fractionation System}},
    16936   pages = {{8-13}},
    16937   journal = {{IEEE Transactions on Nanotechnology}},
    16938   volume = {{5}},
    16939   author = {Graff, Mason and Frazier, A. Bruno}
    16940 }
    16941 @article{Kao1994,
    16942   number = {{3}},
    16943   year = {1994},
    16944   title = {{Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position}},
    16945   pages = {{1291-1300}},
    16946   journal = {{Biophysical Journal}},
    16947   volume = {{67}},
    16948   author = {Kao, H.P. and Verkman, A.S.}
    16949 }
    16950 @article{Jo2007,
    16951   number = {{8}},
    16952   year = {2007},
    16953   title = {{A single-molecule barcoding system using nanoslits for DNA analysis}},
    16954   pages = {{2673-2678}},
    16955   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16956   volume = {{104}},
    16957   author = {Jo, Kyubong and Dhingra, Dalia M. and Odijk, Theo and de Pablo, Juan J. and Graham, Michael D. and Runnheim, Rod and Forrest, Dan and Schwartz, David C.}
    16958 }
    16959 @article{Speidel2003,
    16960   number = {{2}},
    16961   year = {2003},
    16962   title = {{Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging}},
    16963   pages = {{69-71}},
    16964   journal = {{Optics Letters}},
    16965   volume = {{28}},
    16966   author = {Speidel, Michael and Jonas, Alexandr and Florin, Ernst-Ludwig}
    16967 }
    16968 @article{Pounder2006,
    16969   number = {{3}},
    16970   year = {2006},
    16971   title = {{Comparison of real-time polymerase chain reaction using the Smart Cycler and the Gen-Probe amplified Mycobacterium tuberculosis direct test for detection of M. tuberculosis complex in clinical specimens }},
    16972   pages = {{217-222}},
    16973   journal = {{Diagnostic Microbiology and Infectious Disease}},
    16974   volume = {{54}},
    16975   author = {Pounder, June I. and Aldous, Wade K. and Woods, Gail L.}
    16976 }
    16977 @article{Harris1966,
    16978   number = {{7}},
    16979   year = {1966},
    16980   title = {{On Polymer Dynamics}},
    16981   pages = {{2595}},
    16982   journal = {{The Journal of Chemical Physics}},
    16983   volume = {{44}},
    16984   author = {Harris, R.A. and Hearst, J.E.}
    16985 }
    16986 @article{Willert1992,
    16987   year = {1992},
    16988   title = {{Three-dimensional particle imaging with a single camera}},
    16989   pages = {{353-358}},
    16990   journal = {{Experiments in Fluids}},
    16991   volume = {{12}},
    16992   author = {Willert, C. E. and Gharib, M.}
    16993 }
    16994 @article{Oberholzer1997,
    16995   number = {{21}},
    16996   year = {1997},
    16997   title = {{Grand canonical Brownian dynamics simulation of colloidal adsorption}},
    16998   pages = {{9157-9167}},
    16999   journal = {{Journal of Chemical Physics}},
    17000   volume = {{107}},
    17001   author = {Oberholzer, Matthew R. and Wagner, Norman J. and Lenhoff, Abraham M.}
    17002 }
    17003 @article{Wiggins2006,
    17004   year = {2006},
    17005   title = {{Generalized theory of semiflexible polymers}},
    17006   journal = {{Physical Review E}},
    17007   volume = {{73}},
    17008   author = {Wiggins, Paul A. and Nelson, Philip C.}
    17009 }
    17010 @article{Brenner1961,
    17011   number = {{3-4}},
    17012   year = {1961},
    17013   title = {{The slow motion of a sphere through a viscous fluid towards a plane surface}},
    17014   pages = {{242-251}},
    17015   journal = {{Chemical Engineering Science}},
    17016   volume = {{16}},
    17017   author = {Brenner, Howard}
    17018 }
    17019 @article{Bhattacharjee1987,
    17020   number = {{1}},
    17021   year = {1987},
    17022   title = {{Statistical mechanics of solutions of semiflexible chains: A path integral formulation}},
    17023   pages = {{411-418}},
    17024   journal = {{the Journal of Chemical Physics}},
    17025   volume = {{86}},
    17026   author = {Bhattacharjee, Somendra M. and Muthukumar, M.}
    17027 }
    17028 @article{Armani2007,
    17029   year = {2007},
    17030   title = {{Label-Free, Single-Molecule Detection with Optical Microcavities}},
    17031   journal = {{Sciencexpress}},
    17032   author = {Armani, Andrea M. and Kulkarni, Rajan P. and Fraser, Scott E. and Flagan, Richard C. and Vahala, Kerry J.}
    17033 }
    17034 @article{Hegner1999,
    17035   number = {{18}},
    17036   year = {1999},
    17037   title = {{Polymerization and mechanical properties of single RecA-DNA filaments}},
    17038   pages = {{10109-10114}},
    17039   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    17040   volume = {{96}},
    17041   author = {Hegner, Martin and Smith, Steven B. and Bustamante, Carlos}
    17042 }
    17043 @article{Zhu2001,
    17044   number = {{1}},
    17045   year = {2001},
    17046   title = {{Protein arrays and microarrays}},
    17047   pages = {{40-45}},
    17048   journal = {{Current Opinion in Chemical Biology}},
    17049   volume = {{5}},
    17050   author = {Zhu, Heng and Snyder, Michael}
    17051 }
    17052 @article{Wiggins2006b,
    17053   year = {2006},
    17054   title = {{High flexibility of DNA on short length scales probed by atomic force microscopy}},
    17055   pages = {{137-141}},
    17056   journal = {{Nature Nanotechnology}},
    17057   volume = {{1}},
    17058   author = {Wiggins, P. A. and van der Heijden, T. and Moreno-Herrero, F. and Spakowitz, A. and Philips, R. and Windom, J. and Dekker, C. and Nelson, P. C.}
    17059 }
    17060 @article{Zhang2007,
    17061   number = {{10}},
    17062   year = {2007},
    17063   title = {{Gaussian approximations of fluorescence microscope point-spread function models}},
    17064   pages = {{1819-1829}},
    17065   journal = {Applied Optics},
    17066   volume = {{46}},
    17067   author = {Zhang, B. and Zerubia, J. and Olivio-Marin, J.-C.}
    17068 }
    17069 @article{Scott1979,
    17070   number = {{3}},
    17071   year = {1979},
    17072   title = {{On optimal and data-based histograms}},
    17073   pages = {{605-610}},
    17074   journal = {{Biometrika}},
    17075   volume = {{66}},
    17076   author = {Scott, David W.}
    17077 }
    17078 @article{Mlodzianoski2009,
    17079   number = {{10}},
    17080   year = {2009},
    17081   title = {Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy},
    17082   pages = {{8264-8277}},
    17083   journal = {{Optics Express}},
    17084   volume = {{17}},
    17085   author = {Mlodzianoski, M.J. and Juette, M.F. and Beane, G.L. and Bewersdorf, J.}
    17086 }
    17087 @article{Carre2003,
    17088   year = {2003},
    17089   title = {{Molecular interactions between DNA and an aminated glass substrate}},
    17090   pages = {{49-55}},
    17091   journal = {{Journal of Colloid and Interface Science}},
    17092   volume = {{260}},
    17093   author = {Carr\\\'e, Alain and Lacarri\\\`ere, Val\\\'erie and Birch, William}
    17094 }
    17095 @article{Sage2005,
    17096   number = {{9}},
    17097   year = {2005},
    17098   title = {{Automatic Tracking of Individual Fluorescence Particles: Application to the Study of Chromosome Dynamics}},
    17099   pages = {{1372-1383}},
    17100   journal = {{IEEE Transactions on Image Processing}},
    17101   volume = {{14}},
    17102   author = {Sage, Daniel and Neumann, Franck R. and Hediger, Florence and Gasser, Susan M. and Unser, Michael}
    17103 }
    17104 @article{Dohoney2001,
    17105   year = {2001},
    17106   title = {{Chi-Sequence recognition and DNA translocation by single RecBCD helicase/nuclease molecules}},
    17107   pages = {{370-374}},
    17108   journal = {{Nature}},
    17109   volume = {{409}},
    17110   author = {Dohoney, Kathleen M. and Gelles, Jeff}
    17111 }
    17112 @article{Saleh2009,
    17113   number = {{6}},
    17114   year = {2009},
    17115   title = {{Nonlinear Low-Force Elasticity of Single-Stranded DNA Molecules}},
    17116   pages = {{068301}},
    17117   journal = {{Physical Review Letters}},
    17118   volume = {{102}},
    17119   author = {Saleh, O.A. and McIntosh, D.B. and Pincus, P. and Ribeck, N.}
    17120 }
    17121 @article{Moerner2007,
    17122   number = {{31}},
    17123   year = {2007},
    17124   title = {{New directions in single-molecule imaging and analysis}},
    17125   pages = {{12596-12602}},
    17126   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    17127   volume = {{104}},
    17128   author = {Moerner, W.E.}
    17129 }
    17130 @article{Spakowitz2005,
    17131   year = {2005},
    17132   title = {{End-to-end distance vector distribution with fixed end orientations for the wormlike chain model}},
    17133   journal = {{Physical Review E}},
    17134   volume = {{72}},
    17135   author = {Spakowitz, Andrew J. and Wang, Zhen-Gang}
    17136 }
    17137 @article{Spakowitz2004,
    17138   year = {2004},
    17139   title = {{Exact Results for a Semiflexible Polymer Chain in an Aligning Field}},
    17140   pages = {{5814-5823}},
    17141   journal = {{Macromolecules}},
    17142   volume = {{37}},
    17143   author = {Spakowitz, Andrew J. and Wang, Zhen-Gang}
    17144 }
    17145 @article{Spakowitz2006,
    17146   number = {{5}},
    17147   year = {2006},
    17148   title = {{Wormlike chain statistics with twist and fixed ends}},
    17149   pages = {{684-690}},
    17150   journal = {{Europhysics Letters (EPL)}},
    17151   volume = {{73}},
    17152   author = {Spakowitz, A. J.}
    17153 }
    17154 @article{Wieser2008,
    17155   number = {{12}},
    17156   year = {2008},
    17157   title = {{Versatile Analysis of Single-Molecule Tracking Data by Comprehensive Testing against Monte Carlo Simulations}},
    17158   pages = {{5988-6001}},
    17159   journal = {{Biophysical Journal}},
    17160   volume = {{95}},
    17161   author = {Wieser, Stefan and Axmann, Markus and Sch\\\"utz, Gerhard J.}
    17162 }
    17163 @phdthesis{Sarkar2002,
    17164   year = {2002},
    17165   title = {{Theoretical micromechanics of DNA and DNA-protein complexes}},
    17166   school = {{University of Illinois at Chicago}},
    17167   author = {Sarkar, Abhijit}
    17168 }
    17169 @article{Ha1995,
    17170   number = {{21}},
    17171   year = {1995},
    17172   title = {{A mean-field model for semiflexible chains}},
    17173   pages = {{9408-9412}},
    17174   journal = {{Journal of Chemical Physics}},
    17175   volume = {{103}},
    17176   author = {Ha, B.-Y. and Thirumalai, D.}
    17177 }
    17178 @misc{Beausang2006,
    17179   month = {October 1, 2006},
    17180   year = {2006},
    17181   title = {{Elementary simulation of tethered Brownian motion}},
    17182   author = {Beausang, John F. and Zurla, Chiara and Sullivan, Luke and Finzi, Laura and Nelson, Philip C.}
    17183 }
    17184 @article{Beausang2007,
    17185   number = {{6}},
    17186   year = {2007},
    17187   title = {{Elementary simulation of tethered Brownian motion}},
    17188   pages = {{520-523}},
    17189   journal = {{American Journal of Physics}},
    17190   volume = {{75}},
    17191   author = {Beausang, John F. and Zurla, Chiara and Finzi, Laura and Sullivan, Luke and Nelson, Philip C.}
    17192 }
    17193 @phdthesis{Guasto2008,
    17194   year = {2008},
    17195   title = {{Micro- and Nano-scale Colloidal Dynamics Near Surfaces}},
    17196   school = {{Brown University}},
    17197   author = {Guasto, Jeffrey S.}
    17198 }
    17199 @misc{Nelson2001,
    17200   year = {2001},
    17201   title = {{Dynamical Theories of Brownian Motion}},
    17202   volume = {Second edition},
    17203   publisher = {{Princeton University Press}},
    17204   author = {Nelson, Edward}
    17205 }
    17206 @article{Shivashankar1998,
    17207   number = {{3}},
    17208   year = {1998},
    17209   title = {{Backscattering from a tethered bead as a probe of DNA flexibility}},
    17210   pages = {{291-293}},
    17211   journal = {{Applied Physics Letters}},
    17212   volume = {{73}},
    17213   author = {Shivashankar, G.V. and Stolovitzky, G. and Libchaber, A.}
    17214 }
    17215 @phdthesis{Niu2004,
    17216   year = {2004},
    17217   title = {{A Label-free, Fluorescence Based Assay for Microarray}},
    17218   school = {{Virginia Polytechnic Institute and State University}},
    17219   author = {Niu, Sanjun}
    17220 }
    17221 @article{Hiraoka1987,
    17222   year = {1987},
    17223   title = {{The Use of a Charge-Coupled Device for Quantitative Optical Microscopy of Biological Structures}},
    17224   pages = {{36-41}},
    17225   journal = {{Science}},
    17226   volume = {{238}},
    17227   author = {Hiraoka, Yasushi and Sedat, John W. and Agard, David A.}
    17228 }
    17229 @article{Yamakawa1976,
    17230   number = {{6}},
    17231   year = {1976},
    17232   title = {{Statistical mechanics of helical wormlike chains. II. Operational method and moments}},
    17233   pages = {{2371-2376}},
    17234   journal = {{The Journal of Chemical Physics}},
    17235   volume = {{65}},
    17236   author = {Yamakawa, Hiromi and Fujii, Motoharu and Shimada, Jiro}
    17237 }
    17238 @article{Nelson2007,
    17239   year = {2007},
    17240   title = {{Colloidal particle motion as a diagnostic of DNA conformational transitions}},
    17241   journal = {{Current Opinion in Colloid & Interface Science}},
    17242   author = {Nelson, Philip C.}
    17243 }
    17244 @article{Allemand2003,
    17245   year = {2003},
    17246   title = {{Stretching DNA and RNA to probe their interactions with proteins}},
    17247   pages = {{266-274}},
    17248   journal = {{Current Opinion in Structural Biology}},
    17249   volume = {{13}},
    17250   author = {Allemand, Jean-Francois and Bensimon, David and Croquette, Vincent}
    17251 }
    17252 @article{Liu2007,
    17253   number = {{12}},
    17254   year = {2007},
    17255   title = {{Quantized plasmon quenching dips nanospectroscopy via plasmon resonance energy transfer}},
    17256   pages = {{1015-1017}},
    17257   journal = {{Nature Methods}},
    17258   volume = {{4}},
    17259   author = {Liu, Gang Logan and Long, Yi-Tao and Choi, Yeonho and Kang, Taewook and Lee, Luke P.}
    17260 }
    17261 @article{Prieve1990,
    17262   number = {{2}},
    17263   year = {1990},
    17264   title = {{Total Internal Reflection Microscopy: a Tool for Measuring Colloidal Forces}},
    17265   pages = {{396-403}},
    17266   journal = {{Langmuir}},
    17267   volume = {{6}},
    17268   author = {Prieve, Dennis C. and Frej, Nasser A.}
    17269 }
    17270 @article{Strick1996,
    17271   number = {{5257}},
    17272   year = {1996},
    17273   title = {{The Elasticity of a Single Supercoiled DNA Molecule}},
    17274   pages = {{1835-1837}},
    17275   journal = {{Science}},
    17276   volume = {{271}},
    17277   author = {Strick, T.R. and Allemand, J.-F. and Bensimon, D. and Bensimon, A. and Croquette, V.}
    17278 }
    17279 @article{Prieve1993,
    17280   number = {{9}},
    17281   year = {1993},
    17282   title = {{Scattering of an evanescent surface wave by a microscopic dielectric sphere}},
    17283   journal = {{Applied Optics}},
    17284   volume = {{32}},
    17285   author = {Prieve, Dennis C. and Walz, John Y.}
    17286 }
    17287 @article{Montanari2001,
    17288   number = {{10}},
    17289   year = {2001},
    17290   title = {{Hairpin Formation and Elongation of Biomolecules}},
    17291   pages = {{2178-2181}},
    17292   journal = {{Physical Review Letters}},
    17293   volume = {{86}},
    17294   author = {Montanari, Andrea and M\\\'ezard, Marc}
    17295 }
    17296 @article{Storm2003b,
    17297   number = {{5}},
    17298   year = {2003},
    17299   title = {{Theory of high-force DNA stretching and overstretching}},
    17300   pages = {{051906}},
    17301   journal = {{Physical Review E}},
    17302   volume = {{67}},
    17303   author = {Storm, C. and Nelson, P. C.}
    17304 }
    17305 @article{Bouchiat1999,
    17306   year = {1999},
    17307   title = {{Estimating the Persistence Length of a Worm-Like Chain Molecule from Force-Extension Measurements}},
    17308   pages = {{409-413}},
    17309   journal = {{Biophysical Journal}},
    17310   volume = {{76}},
    17311   author = {Bouchiat, C. and Wang, M. D. and Allemand, J.-F. and Strick, T. and Block, S. M. and Croquette, V.}
    17312 }
    17313 @article{Cady2007,
    17314   year = {2007},
    17315   title = {{Optimized linkage and quenching strategies for quantum dot molecular beacons}},
    17316   pages = {{116-124}},
    17317   journal = {{Molecular and Cellular Probes}},
    17318   volume = {{21}},
    17319   author = {Cady, Nathaniel C. and Strickland, Aaron D. and Batt, Carl A.}
    17320 }
    17321 @article{Fraden1993,
    17322   number = {{4}},
    17323   year = {1993},
    17324   title = {{Angular correlations and the isotropic-nematic phase transition in suspensions of tobacco mosaic virus}},
    17325   pages = {{2816-2838}},
    17326   journal = {{Physical Review E}},
    17327   volume = {{48}},
    17328   author = {Fraden, Seth and Maret, Georg}
    17329 }
    17330 @article{Bustamante1994,
    17331   number = {{5178}},
    17332   year = {1994},
    17333   title = {{Entropic Elasticity of lambda-Phage DNA}},
    17334   pages = {{1599-1601}},
    17335   journal = {{Science}},
    17336   volume = {{265}},
    17337   author = {Bustamante, C. and Marko, J.F. and Siggia, E.D. and Smith, S.}
    17338 }
    17339 @article{Rouse1953,
    17340   number = {{7}},
    17341   year = {1953},
    17342   title = {{A Theory of the Linear Viscoelastic Properties of Dilute Solutions of Coiling Polymers}},
    17343   pages = {{1272-1280}},
    17344   journal = {{The Journal of Chemical Physics}},
    17345   volume = {{21}},
    17346   author = {Rouse, Prince E.}
    17347 }
    17348 @article{Vanzi2003,
    17349   number = {{10}},
    17350   year = {2003},
    17351   title = {{Protein synthesis by single ribosomes}},
    17352   pages = {{1174-1179}},
    17353   journal = {{RNA}},
    17354   volume = {{9}},
    17355   author = {Vanzi, Francesco and Vladimirov, Serguei and Knudsen, Charlotte R. and Goldman, Yale E. and Cooperman, Barry S.}
    17356 }
    17357 @article{Lambert2006,
    17358   year = {2006},
    17359   title = {{Mg2+-Induced Compaction of Single RNA Molecules Monitored by Tethered Particle Microscopy}},
    17360   pages = {{3672-3685}},
    17361   journal = {{Biophysical Journal}},
    17362   volume = {{90}},
    17363   author = {Lambert, Meredith Newby and V\\\"ocker, Eva and Blumberg, Seth and Redemann, Stefanie and Gajraj, Arivalagan and Meiners, Jens-Christian and Walter, Nils. G.}
    17364 }
    17365 @article{Kessler2004,
    17366   number = {{2}},
    17367   year = {2004},
    17368   title = {{Distribution functions for filaments under tension}},
    17369   pages = {{1155-1164}},
    17370   journal = {{Journal of Chemical Physics}},
    17371   volume = {{121}},
    17372   author = {Kessler, David A. and Rabin, Yitzhak}
    17373 }
    17374 @article{Edwards1970,
    17375   year = {1970},
    17376   title = {{Theory of the Single Chain}},
    17377   pages = {{43}},
    17378   journal = {{Discussions of the Faraday Society}},
    17379   volume = {{49}},
    17380   author = {Edwards, S.F.}
    17381 }
    17382 @article{Bouzigues2008,
    17383   number = {{11}},
    17384   year = {2008},
    17385   title = {{Nanofluidics in the Debye Layer at Hydrophilic and Hydrophobic Surfaces}},
    17386   pages = {{114503}},
    17387   journal = {{Physical Review Letters}},
    17388   volume = {{101}},
    17389   author = {Bouzigues, C. I. and Tabeling, P. and Bocquet, L.}
    17390 }
    17391 @misc{Odijk2008,
    17392   month = {05 September 2008},
    17393   year = {2008},
    17394   title = {{Private communication}},
    17395   author = {Odijk, Theo}
    17396 }
    17397 @article{Kirkpatrick2008,
    17398   number = {{1}},
    17399   year = {2008},
    17400   title = {{Performance of a gradient-based shift estimator in a spatially sparse data environment: tracking the sub-pixel motion of fluorescent particles}},
    17401   pages = {{64-72}},
    17402   journal = {{Journal of Microscopy}},
    17403   volume = {{212}},
    17404   author = {Kirkpatrick, S.J. and Duncan, D.D.}
    17405 }
    17406 @article{Visnapuu2009,
    17407   number = {{10}},
    17408   year = {2009},
    17409   title = {{Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition}},
    17410   pages = {{1056-1062}},
    17411   journal = {{Nature Structural & Molecular Biology}},
    17412   volume = {{16}},
    17413   author = {Visnapuu, Mari-Liis and Greene, Eric C.}
    17414 }
    17415 @book{Conover1980,
    17416   series = {{Wiley series in probability and mathematical statistics}},
    17417   edition = {{Second edition}},
    17418   year = {1980},
    17419   title = {{Practical Nonparametric Statistics}},
    17420   address = {{New York}},
    17421   publisher = {{Wiley}},
    17422   author = {Conover, W.J.}
    17423 }
    17424 @article{Snyder1992,
    17425   number = {{5}},
    17426   year = {1992},
    17427   title = {{Deblurring Subject to Nonnegativity Constraints}},
    17428   pages = {{1143-1150}},
    17429   journal = {{IEEE Transactions on Signal Processing}},
    17430   volume = {{40}},
    17431   author = {Snyder, Donald L. and Schulz, Timothy H. and O'Sullivan, Joseph A.}
    17432 }
    17433 @article{DiMarzio1965b,
    17434   number = {{2}},
    17435   year = {1965},
    17436   title = {{One-Dimensional Model of Polymer Adsorption}},
    17437   journal = {{The Journal of Chemical Physics}},
    17438   volume = {{43}},
    17439   author = {DiMarzio, Edmund A. and McCrackin, Frank L.}
    17440 }
    17441 @article{DiMarzio1965a,
    17442   number = {{6}},
    17443   year = {1965},
    17444   title = {{Proper Accounting of Conformations of a Polymer Near a Surface}},
    17445   pages = {{2101-2106}},
    17446   journal = {{The Journal of Chemical Physics}},
    17447   volume = {{42}},
    17448   author = {DiMarzio, Edmund A.}
    17449 }
    17450 @article{Netopilik1990,
    17451   year = {1990},
    17452   title = {{Orientation-dependent rotational diffusion coefficient of rod-like macromolecules in semi-dilute solution}},
    17453   pages = {{172-173}},
    17454   journal = {{Rheologica Acta}},
    17455   volume = {{29}},
    17456   author = {Netopil\\\'{\\\i}k, M.}
    17457 }
    17458 @article{Hamaker1937,
    17459   number = {{10}},
    17460   year = {1937},
    17461   title = {{The London-Van Der Waals Attraction Between Spherical Particles}},
    17462   pages = {{1058-1072}},
    17463   journal = {{Physica }},
    17464   volume = {{4}},
    17465   author = {Hamaker, H.C.}
    17466 }
    17467 @article{Cheezum2001,
    17468   number = {{4}},
    17469   year = {2001},
    17470   title = {{Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles}},
    17471   pages = {{2378-2388}},
    17472   journal = {{Biophysical Journal}},
    17473   volume = {{81}},
    17474   author = {Cheezum, Michael K. and Walker, William F. and Guilford, William H.}
    17475 }
    17476 @article{Ritchie2005,
    17477   number = {{3}},
    17478   year = {2005},
    17479   title = {{Detection of Non-Brownian Diffusion in the Cell Membrane in Single Molecule Tracking}},
    17480   pages = {{2266-2277}},
    17481   journal = {{Biophysical Journal}},
    17482   volume = {{88}},
    17483   author = {Ritchie, Ken and Sha, Xiao-Yuan and Kondo, Junko and Iwasawa, Kokoro and Fujiwara, Takahiro and Kusumi, Akihiro}
    17484 }
    17485 @incollection{Han2009,
    17486   series = {{The IMA Volumes in Mathematics and its Applications}},
    17487   year = {2009},
    17488   title = {{Calibration of Tethered Particle Motion Experiments}},
    17489   booktitle = {{Mathematics of DNA Structure, Funcion and Interactions}},
    17490   editor = {Benham, C.J. and Harvey, S. and Olson, W.K. and Sumners, D.W. and Swigon, D.},
    17491   volume = {150},
    17492   publisher = {{Springer}},
    17493   author = {Han, Lin and Lui, Bertrand and Blumberg, Seth and Beausang, John F. and Nelson, Philip C. and Philips, Rob}
    17494 }
    17495 @article{Towles2009,
    17496   year = {2009},
    17497   title = {{First-principles calculation of DNA looping in tethered particle experiments}},
    17498   pages = {{025001}},
    17499   journal = {{Physical Biology}},
    17500   volume = {{6}},
    17501   author = {Towles, Kevin B. and Beausang, John F. and Garcia, H.G. and Philips, Rob and Nelson, Philip C.}
    17502 }
    17503 @article{Pralle1999,
    17504   number = {{5}},
    17505   year = {1999},
    17506   title = {{Three-Dimensional High-resolution Particle Tracking for Optical Tweezers by Forward Scattered Light}},
    17507   pages = {{378-386}},
    17508   journal = {{Microscopy Research and Technique}},
    17509   volume = {{44}},
    17510   author = {Pralle, A. and Prummer, M. and Florin, E.-L and Stelzer, E.H.K. and H\\\"orber, J.K.H.}
    17511 }
    17512 @article{Wrobel2003,
    17513   number = {{12}},
    17514   year = {2003},
    17515   title = {{Optimization of high-density cDNA-microarray protocols by 'design of experiments'}},
    17516   journal = {{Nucleic Acids Research}},
    17517   volume = {{131}},
    17518   author = {Wrobel, Gunnar and Schlingemann, Joerg and Hummerich, Lars and Kramer, Heidi and Lichter, Peter and Hahn, Meinhard}
    17519 }
    17520 @article{Gibson1989,
    17521   number = {{9}},
    17522   year = {1989},
    17523   title = {{Diffraction by a Circular Aperture as a Model for Three-Dimensional Microscopy}},
    17524   pages = {{1357-1367}},
    17525   journal = {{Journal of the Optical Society of America A}},
    17526   volume = {{6}},
    17527   author = {Gibson, Sarah Frisken and Lanni, Frederick}
    17528 }
    17529 @article{Destainville2006,
    17530   number = {{2}},
    17531   year = {2006},
    17532   title = {{Quantification and Correction of Systematic Erros Due to Detector Time-Averaging in Single-Molecule Tracking Experiments}},
    17533   pages = {{L17-L19}},
    17534   journal = {{Biophysical Journal}},
    17535   volume = {{90}},
    17536   author = {Destainville, Nicolas and Salom\\\'e, Laurence}
    17537 }
    17538 @article{Sader1997,
    17539   number = {{2}},
    17540   year = {1997},
    17541   title = {{Accurate Analytic Formulae for the Far Field Effective Potential and Surface Charge Density of a Uniformly Charged Sphere}},
    17542   pages = {{508-510}},
    17543   journal = {{Journal of Colloid and Interface Science}},
    17544   volume = {{188}},
    17545   author = {Sader, John Elie}
    17546 }
    17547 @article{Durnin1987,
    17548   number = {{15}},
    17549   year = {1987},
    17550   title = {{Diffraction-Free Beams}},
    17551   pages = {{1499-1501}},
    17552   journal = {{Physical Review Letters}},
    17553   volume = {{58}},
    17554   author = {Durnin, J. and Miceli, J.J., Jr. and Eberly, J.H.}
    17555 }
    17556 @article{Moroz1998,
    17557   year = {1998},
    17558   title = {{Entropic Elasticity of Twist-Storing Polymers}},
    17559   pages = {{6333-6347}},
    17560   journal = {{Macromolecules}},
    17561   volume = {{31}},
    17562   author = {Moroz, J. David and Nelson, Philip}
    17563 }
    17564 @article{Peters1998,
    17565   number = {{7}},
    17566   year = {1998},
    17567   title = {{Three dimensional single-particle tracking with nanometer resolution}},
    17568   pages = {{2762-2766}},
    17569   journal = {{Review of Scientific Instruments}},
    17570   volume = {{69}},
    17571   author = {Peters, Inge M. and de Grooth, Bart G. and Schins, Juleon M. and Figdor, Carl G. and Greve, Jan}
    17572 }
    17573 @article{Kessler1991,
    17574   year = {1991},
    17575   title = {{The digoxigenin:anti-digoxigening (DIG) technology - a survey on the concept and realization of a novel bioanalytical indicator system}},
    17576   pages = {{161-205}},
    17577   journal = {{Molecular and Cellular Probes}},
    17578   volume = {{5}},
    17579   author = {Kessler, Christoph}
    17580 }
    17581 @article{Hyeon2006a,
    17582   number = {{10}},
    17583   year = {2006},
    17584   title = {{Kinetics of interior loop formation in semiflexible chains}},
    17585   pages = {{104905}},
    17586   journal = {{The Journal of Chemical Physics}},
    17587   volume = {{124}},
    17588   author = {Hyeon, Changbong and Thirumalai, D.}
    17589 }
    17590 @article{Moroz1997,
    17591   number = {{26}},
    17592   year = {1997},
    17593   title = {{Torsional directed walks, entropic elasticity, and DNA twist stiffness}},
    17594   pages = {{14418-14422}},
    17595   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    17596   volume = {{94}},
    17597   author = {Moroz, J. David and Nelson, Philip}
    17598 }
    17599 @article{Massart2005,
    17600   number = {{4}},
    17601   year = {2005},
    17602   title = {{Visual Presentation of Data by Means of Box Plots}},
    17603   pages = {{215-218}},
    17604   journal = {{LC-GC Europe}},
    17605   volume = {{18}},
    17606   author = {Massart, D.L. and Smeyers-Verbeke, J. and Capron, X. and Schlesier, Karin}
    17607 }
    17608 @article{Hynes2001,
    17609   number = {3},
    17610   year = {2001},
    17611   title = {The ErbB receptor tyrosine family as signal integrators},
    17612   pages = {151-9},
    17613   journal = {Endocr Relat Cancer},
    17614   volume = {8},
    17615   author = {Hynes, N. E. and Horsch, K. and Olayioye, M. A. and Badache, A.}
    17616 }
    17617 @article{Michalet2001,
    17618   number = {4},
    17619   year = {2001},
    17620   title = {Properties of fluorescent semiconductor nanocrystals and their application to biological labeling},
    17621   pages = {261-276},
    17622   journal = {Single Molecules},
    17623   volume = {2},
    17624   author = {Michalet, X. and Pinaud, F. and Lacoste, T. D. and Dahan, M. and Bruchez, M. P. and Alivisatos, A. P. and Weiss, S.}
    17625 }
    17626 @article{Kuno2001,
    17627   number = {2},
    17628   year = {2001},
    17629   title = {"On"/"off" fluorescence intermittency of single semiconductor quantum dots},
    17630   pages = {1028-1040},
    17631   journal = {Journal of Chemical Physics},
    17632   volume = {115},
    17633   author = {Kuno, M. and Fromm, D. P. and Hamann, H. F. and Gallagher, A. and Nesbitt, D. J.}
    17634 }
    17635 @article{Martinez2003,
    17636   number = {4},
    17637   year = {2003},
    17638   title = {Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays},
    17639   pages = {e18},
    17640   journal = {Nucleic Acids Research},
    17641   volume = {31},
    17642   author = {Martinez, M. J. and Aragon, A. D. and Rodriguez, A. L. and Weber, J. M. and Timlin, J. A. and Sinclair, M. B. and Haaland, D. M. and Werner-Washburne, M.}
    17643 }
    17644 @article{Stauffer1997,
    17645   number = {6},
    17646   year = {1997},
    17647   title = {Compartmentalized IgE receptor-mediated signal transduction in living cells},
    17648   pages = {1447-54},
    17649   journal = {J Cell Biol},
    17650   volume = {139},
    17651   author = {Stauffer, T. P. and Meyer, T.}
    17652 }
    17653 @article{Hebert2005,
    17654   number = {5},
    17655   year = {2005},
    17656   title = {Spatiotemporal image correlation Spectroscopy (STICS) theory, verification, and application to protein velocity mapping in living CHO cells},
    17657   pages = {3601-3614},
    17658   journal = {Biophysical Journal},
    17659   volume = {88},
    17660   author = {Hebert, B. and Costantino, S. and Wiseman, P. W.}
    17661 }
    17662 @article{Pyenta2003,
    17663   year = {2003},
    17664   title = {Lateral diffusion of membrane lipid-anchored probes before and after aggregation of cell surface IgE-receptors},
    17665   pages = {8310-8318},
    17666   journal = {J. Phys. Chem. A},
    17667   volume = {107},
    17668   author = {Pyenta, P. and Schwille, P. and Webb, W. and Holowka, D. and Baird, B.}
    17669 }
    17670 @misc{CUDA,
    17671   year = {2007},
    17672   title = {Compute Unified Device Architecture (CUDA)},
    17673   note = {{http://www.nvidia.com}},
    17674   author = {NVIDIA}
    17675 }
    17676 @article{Petersen1993,
    17677   year = {1993},
    17678   title = {Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application},
    17679   pages = {1135-1146},
    17680   journal = {Biophys. J.},
    17681   volume = {65},
    17682   author = {Petersen, N. and Hoddelius, P.L. and Wiseman, P. and Seger, O. and Magnusson, K.}
    17683 }
    17684 @article{Hess2006,
    17685   number = {11},
    17686   year = {2006},
    17687   title = {Ultra-high resolution imaging by fluorescence photoactivation localization microscopy},
    17688   pages = {4258-4272},
    17689   journal = {Biophysical Journal},
    17690   volume = {91},
    17691   author = {Hess, S. T. and Girirajan, T. P. K. and Mason, M. D.}
    17692 }
    17693 @article{Kotula2004,
    17694   year = {2004},
    17695   title = {Automated analysis of SEM X-Ray spectral images: a powerful new microanalysis tool},
    17696   pages = {1-17},
    17697   journal = {Microscopy and Microanalysis },
    17698   volume = {9},
    17699   author = {Kotula, P. G. and Keenan, M. R. and Michael, J. R. }
    17700 }
    17701 @article{Yarden2001,
    17702   number = {2},
    17703   year = {2001},
    17704   title = {Untangling the ErbB signalling network},
    17705   pages = {127-37},
    17706   journal = {Nat Rev Mol Cell Biol},
    17707   volume = {2},
    17708   author = {Yarden, Y. and Sliwkowski, M. X.}
    17709 }
    17710 @article{MinGW,
    17711   year = {2008},
    17712   title = {Minimalist GNU for Windows},
    17713   url = {http://www.mingw.org/},
    17714   author = {MinGW}
    17715 }
    17716 @article{Shroff2008,
    17717   number = {5},
    17718   year = {2008},
    17719   title = {Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics},
    17720   pages = {417-423},
    17721   journal = {Nature Methods},
    17722   volume = {5},
    17723   author = {Shroff, H. and Galbraith, C. G. and Galbraith, J. A. and Betzig, E.}
    17724 }
    17725 @book{Jain1988,
    17726   year = {1988},
    17727   title = {Algorithms for Clustering Data},
    17728   publisher = {Prentice Hall},
    17729   author = {Jain, A. and Dubes, R.}
    17730 }
    17731 @article{Grecco2004,
    17732   number = {4-5},
    17733   year = {2004},
    17734   title = {Ensemble and single particle photophysical proper-ties (Two-Photon excitation, anisotropy, FRET, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells},
    17735   pages = {169-179},
    17736   journal = {Microscopy Research and Technique},
    17737   volume = {65},
    17738   author = {Grecco, H. E. and Lidke, K. A. and Heintzmann, R. and Lidke, D. S. and Spagnuolo, C. and Martinez, O. E. and Jares-Erijman, E. A. and Jovin, T. M.}
    17739 }
    17740 @article{VanBenthem2002,
    17741   year = {2002},
    17742   title = {Application of equality constraints on variables during alternating least squares procedures},
    17743   pages = {613-622},
    17744   journal = {Journal of Chemometrics},
    17745   volume = {16},
    17746   author = {Van Benthem, M. H. and Keenan, M. R. and Haaland, D. M. }
    17747 }
    17748 @article{Manley2008,
    17749   number = {2},
    17750   year = {2008},
    17751   title = {High-density mapping of single-molecule trajectories with photoactivated localization microscopy},
    17752   pages = {155-157},
    17753   journal = {Nature Methods},
    17754   volume = {5},
    17755   author = {Manley, S. and Gillette, J. M. and Patterson, G. H. and Shroff, H. and Hess, H. F. and Betzig, E. and Lippincott-Schwartz, J.}
    17756 }
    17757 @article{Wilson2000,
    17758   number = {5},
    17759   year = {2000},
    17760   title = {Observing FcepsilonRI signaling from the inside of the mast cell membrane},
    17761   pages = {1131-1142},
    17762   journal = {Journal of Cell Biology},
    17763   volume = {149},
    17764   author = {Wilson, B. S. and Pfeiffer, J. R. and Oliver, J. M.}
    17765 }
    17766 @article{Wilson2004,
    17767   number = {6},
    17768   year = {2004},
    17769   title = {Markers for detergent-resistant lipid rafts occupy distinct and dynamic domains in native membranes},
    17770   pages = {2580-2592},
    17771   journal = {Molecular Biology of the Cell},
    17772   volume = {15},
    17773   author = {Wilson, B. S. and Steinberg, S. L. and Liederman, K. and Pfeiffer, J. R. and Surviladze, Z. and Zhang, J. and Samelson, L. E. and Yang, L. H. and Kotula, P. G. and Oliver, J. M.}
    17774 }
    17775 @article{Timlin2005,
    17776   number = {1},
    17777   year = {2005},
    17778   title = {Hyperspectral microarray scanning: impact on the accuracy and reliability of gene expression data},
    17779   pages = {72},
    17780   journal = {BMC Genomics},
    17781   volume = {6},
    17782   author = {Timlin, J. A. and Haaland, D. M. and Sinclair, M. B. and Aragon, A. D. and Martinez, M. J. and Werner-Washburne, M.}
    17783 }
    17784 @article{Forney1973,
    17785   number = {3},
    17786   year = {1973},
    17787   title = {Viterbi Algorithm},
    17788   pages = {268-278},
    17789   journal = {Proceedings of the Ieee},
    17790   volume = {61},
    17791   author = {Forney, G. D.}
    17792 }
    17793 @article{Szent-Gyorgyi2008,
    17794   number = {4},
    17795   year = {2008},
    17796   title = {Fluorogen-activating single-chain antibodies for imaging cell surface proteins (vol 26, pg 235, 2008)},
    17797   pages = {470-470},
    17798   journal = {Nature Biotechnology},
    17799   volume = {26},
    17800   author = {Szent-Gyorgyi, C. and Schmidt, B. F. and Creeger, Y. and Fisher, G. W. and Zakel, K. L. and Adler, S. and Fitzpatrick, J. A. J. and Woolford, C. A. and Yan, Q. and Vasilev, K. V. and Berget, P. B. and Bruchez, M. P. and Jarvik, J. W. and Waggoner, A.}
    17801 }
    17802 @article{Andrews2008,
    17803   number = {8},
    17804   year = {2008},
    17805   title = {Actin restricts {Fc}$\epsilon${RI} diffusion and facilitates antigen-induced receptor immobilization},
    17806   pages = {955-963},
    17807   journal = {Nature Cell Biology},
    17808   volume = {10},
    17809   author = {Andrews, N. L. and Lidke, K. A. and Pfeiffer, J. R. and Burns, A. R. and Wilson, B. S. and Oliver, J. M. and Lidke, D. S.}
    17810 }
    17811 @inproceedings{Lidke2007ieee,
    17812   year = {2007},
    17813   title = {Localization fluorescence microscopy using quantum dot blinking},
    17814   booktitle = {4th IEEE International Symposium on Biomedical Imaging},
    17815   pages = {936-939},
    17816   address = {Metro Washington DC, USA. },
    17817   author = {Lidke, K. A. and Heintzmann, R.}
    17818 }
    17819 @article{Jinschek2010,
    17820   year = {2010},
    17821   title = {Quantitative atomic 3-D imaging of single/double sheet graphene structure},
    17822   journal = {Carbon},
    17823   author = {Jinschek, J.R. and Yucelen, E. and Calderon, H.A. and Freitag, B.}
    17824 }
    17825 @article{Bates2007,
    17826   number = {5845},
    17827   year = {2007},
    17828   title = {Multicolor super-resolution imaging with photo-switchable fluorescent probes},
    17829   pages = {1749-53},
    17830   journal = {Science},
    17831   volume = {317},
    17832   author = {Bates, M. and Huang, B. and Dempsey, G. T. and Zhuang, X.}
    17833 }
    17834 @book{Bos2007,
    17835   year = {2007},
    17836   title = {Parameter Estimation for Scientists and Engineers},
    17837   address = {New Jersey},
    17838   publisher = {Wiley \& Sons},
    17839   author = {A. van den Bos}
    17840 }
    17841 @article{Wolter2009,
    17842   number = {1},
    17843   year = {2010},
    17844   title = {Real-time computation of subdiffraction-resolution fluorescence images},
    17845   pages = {12-22},
    17846   journal = {Journal of Microscopy},
    17847   volume = {237},
    17848   author = {Wolter, S. and Schuttpelz, M. and Tescherepanow, M. and Linde, van de S. and Heilemann, M. and Sauer, M.}
    17849 }
    17850 @article{Bock2007,
    17851   number = {2},
    17852   year = {2007},
    17853   title = {Two-color far-field fluorescence nanoscopy based on photoswitchable emitters},
    17854   pages = {161-165},
    17855   journal = {Applied Physics B-Lasers and Optics},
    17856   volume = {88},
    17857   author = {Bock, H. and Geisler, C. and Wurm, C. A. and Von Middendorff, C. and Jakobs, S. and Schonle, A. and Egner, A. and Hell, S. W. and Eggeling, C.}
    17858 }
    17859 @article{Rust2006,
    17860   number = {10},
    17861   year = {2006},
    17862   title = {Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy {(STORM)}},
    17863   pages = {793-795},
    17864   journal = {Nature Methods},
    17865   volume = {3},
    17866   author = {Rust, M. J. and Bates, M. and Zhuang, X. W.}
    17867 }
    17868 @article{Enderlein2006,
    17869   number = {18},
    17870   year = {2006},
    17871   title = {Polariztion effect on position accuracy of fluorophore localization},
    17872   pages = {8112-8120},
    17873   journal = {Optics Express},
    17874   volume = {14},
    17875   author = {Enderlein, J. and Toprak, E. and Selvin, P.R.}
    17876 }
    17877 @article{Enderlein2000,
    17878   number = {9},
    17879   year = {2000},
    17880   title = {Theoretical Study of detection of a dipole emitter through an objective with high numerical aperture},
    17881   pages = {634-636},
    17882   journal = {Optics Letters},
    17883   volume = {25},
    17884   author = {Enderlein, J.}
    17885 }
    17886 @article{Dahan2003,
    17887   number = {5644},
    17888   year = {2003},
    17889   title = {Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking},
    17890   pages = {442-445},
    17891   journal = {Science},
    17892   volume = {302},
    17893   author = {Dahan, M. and Levi, S. and Luccardini, C. and Rostaing, P. and Riveau, B. and Triller, A.}
    17894 }
    17895 @misc{OberEstimationtool,
    17896   year = {2009},
    17897   title = {Estimation tool},
    17898   note = {University of Texas, Southwestern {http://www4.utsouthwestern.edu/wardlab}},
    17899   author = {Ober, R.J. and Ward, E.S.}
    17900 }
    17901 @article{Jin2007,
    17902   number = {3},
    17903   year = {2007},
    17904   title = {Single-particle tracking of membrane protein diffusion in a potential: Simulation, detection, and application to confined diffusion of CFTR Cl- channels},
    17905   pages = {1079-1088},
    17906   journal = {Biophysical Journal},
    17907   volume = {93},
    17908   author = {Jin, S. and Haggie, P. M. and Verkman, A. S.}
    17909 }
    17910 @article{Jin2007b,
    17911   number = {14},
    17912   year = {2007},
    17913   title = {Single particle tracking of complex diffusion in membranes: Simulation and detection of barrier, raft, and interaction phenomena},
    17914   pages = {3625-3632},
    17915   journal = {Journal of Physical Chemistry B},
    17916   volume = {111},
    17917   author = {Jin, S. and Verkman, A. S.}
    17918 }
    17919 @article{Rasnik2006,
    17920   number = {11},
    17921   year = {2006},
    17922   title = {Nonblinking and longlasting single-molecule fluorescence imaging},
    17923   pages = {891-893},
    17924   journal = {Nature Methods},
    17925   volume = {3},
    17926   author = {Rasnik, I. and McKinney, S. A. and Ha, T.}
    17927 }
    17928 @article{Hell1992,
    17929   number = {5-6},
    17930   year = {1992},
    17931   title = {Fundamental Improvement of Resolution with a 4Pi-Confocal Fluorescence Microscope Using 2-Photon Excitation},
    17932   pages = {277-282},
    17933   journal = {Optics Communications},
    17934   volume = {93},
    17935   author = {Hell, S. and Stelzer, E. H. K.}
    17936 }
    17937 @article{LidkeDS2007,
    17938   year = {2007},
    17939   title = {Exploring membrane protein dynamics by multicolor single quantum dot imaging using wide field, TIRF, and hyperspectral microscopy},
    17940   pages = {6448Y1-8},
    17941   journal = {Proc. of SPIE},
    17942   volume = {6448},
    17943   author = {Lidke, D. S. and Andrews, N. L. and Pfeiffer, J. R. and Jones, H. D. T. and Sinclair, M. B. and Haaland, D. M and Burns, A. R. and Wilson, B. S. and M., Oliver. J. and Lidke, K. A.}
    17944 }
    17945 @article{Warren1997,
    17946   number = {4},
    17947   year = {1997},
    17948   title = {Compact prism spectrographs based on aplanatic principles},
    17949   pages = {1174-1182},
    17950   journal = {Optical Engineering},
    17951   volume = {36},
    17952   author = {Warren, D. W. and Hackwell, J. A. and Gutierrez, D. J.}
    17953 }
    17954 @article{Schlessinger2002,
    17955   number = {6},
    17956   year = {2002},
    17957   title = {Ligand-induced, receptor-mediated dimerization and activation of EGF receptor},
    17958   pages = {669-72},
    17959   journal = {Cell},
    17960   volume = {110},
    17961   author = {Schlessinger, J.}
    17962 }
    17963 @article{Arndt-Jovin2006,
    17964   year = {2006},
    17965   title = {In vivo cell imaging with semiconductor quantum dots and noble-metal nanodots},
    17966   journal = {Proc. of SPIE},
    17967   volume = {6096, 60960P},
    17968   author = {Arndt-Jovin, D. J. and Lopez-Quintela, M. A and Lidke, D. S. and Rodr\'{i}guez, M. J. and Santos, F. M. and Lidke, K. A. and Hagen, G. M. and Jovin, T. M.}
    17969 }
    17970 @article{Ehrensperger2007,
    17971   number = {10},
    17972   year = {2007},
    17973   title = {Multiple association states between glycine receptors and gephyrin identified by SPT analysis},
    17974   pages = {3706-3718},
    17975   journal = {Biophysical Journal},
    17976   volume = {92},
    17977   author = {Ehrensperger, M. V. and Hanus, C. and Vannier, C. and Triller, A. and Dahan, M.}
    17978 }
    17979 @article{Gilfillan2006,
    17980   number = {3},
    17981   year = {2006},
    17982   title = {Integrated signalling pathways for mast-cell activation},
    17983   pages = {218-30},
    17984   journal = {Nat Rev Immunol},
    17985   volume = {6},
    17986   author = {Gilfillan, A. M. and Tkaczyk, C.}
    17987 }
    17988 @article{Eggeling2009,
    17989   year = {2009},
    17990   title = {Direct observation of the nanoscale dynamics of membrane lipids in a living cell},
    17991   pages = {1159-1163},
    17992   journal = {Nature},
    17993   volume = {457},
    17994   author = {Eggeling, C. and Ringemann, C. and Medda, R. and
    17995 Schwarzmann, G. and Sandhoff, K. and Polyakova, S. and Belov, V.N. and Hein, B. and Middendorff, C. v. and {Sch\"onle}, A. and  Hell, S. W.}
    17996 }
    17997 @article{Huang2008a,
    17998   number = {12},
    17999   year = {2008},
    18000   title = {Whole-cell {3D STORM} reveals interactions between cellular structures with nanometer-scale resolution},
    18001   pages = {1047-1053},
    18002   journal = {Nature Methods},
    18003   volume = {5},
    18004   author = {Huang, B. and Jones, S.A. and Brandenburg, B. and Zhuang, X.}
    18005 }
    18006 @article{Hess2007,
    18007   number = {44},
    18008   year = {2007},
    18009   title = {Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories},
    18010   pages = {17370-17375},
    18011   journal = {Proceedings of the National Academy of Sciences},
    18012   volume = {104},
    18013   author = {Hess, S.T. and Gould, T.J. and Gudhetl, M.V. and Maas, S.A. and Mills, K.D. and Zimmerberg, J.}
    18014 }
    18015 @article{Gustafsson2005,
    18016   number = {37},
    18017   year = {2005},
    18018   title = {Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution},
    18019   pages = {13081-13086},
    18020   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    18021   volume = {102},
    18022   author = {Gustafsson, M. G. L.}
    18023 }
    18024 @article{Egner2007,
    18025   number = {9},
    18026   year = {2007},
    18027   title = {Fluorescence nanoscopy in whole cells by asynchronous localization of photoswitching emitters},
    18028   pages = {3285-3290},
    18029   journal = {Biophysical Journal},
    18030   volume = {93},
    18031   author = {Egner, A. and Geisler, C. and Von Middendorff, C. and Bock, H. and Wenzel, D. and Medda, R. and Andresen, M. and Stiel, A. C. and Jakobs, S. and Eggeling, C. and {Sch\"onle}, A. and Hell, S. W.}
    18032 }
    18033 @article{Bates2005,
    18034   number = {10},
    18035   year = {2005},
    18036   title = {Short-range spectroscopic ruler based on a single-molecule optical switch},
    18037   pages = {-},
    18038   journal = {Physical Review Letters},
    18039   volume = {94},
    18040   author = {Bates, M. and Blosser, T. R. and Zhuang, X. W.}
    18041 }
    18042 @article{Sinclair2006,
    18043   number = {24},
    18044   year = {2006},
    18045   title = {Hyperspectral confocal microscope},
    18046   pages = {6283-91},
    18047   journal = {Appl Opt},
    18048   volume = {45},
    18049   author = {Sinclair, M. B. and Haaland, D. M. and Timlin, J. A. and Jones, H. D.}
    18050 }
    18051 @article{Sinclair2004,
    18052   number = {10},
    18053   year = {2004},
    18054   title = {Design, construction, characterization, and application of a hyperspectral microarray scanner},
    18055   pages = {2079-2088},
    18056   journal = {Applied Optics},
    18057   volume = {43},
    18058   author = {Sinclair, M. B. and Timlin, J. A. and Haaland, D. M. and Werner-Washburne, M.}
    18059 }
    18060 @article{Sark2002,
    18061   number = {10},
    18062   year = {2002},
    18063   title = {Blueing, bleaching, and blinking of single CdSe/ZnS quantum dots},
    18064   pages = {871-879},
    18065   journal = {Chemphyschem},
    18066   volume = {3},
    18067   author = {Sark, W. G. J. H. M. van and Frederix, P. L. T. M. and Bol, A. A. and Gerritsen, H. C. and Meijerink, A.}
    18068 }
    18069 @book{Haaland2003,
    18070   series = {In Spectral Imaging: Instrumentation, Applications, and Analysis},
    18071   year = {2003},
    18072   title = {Multivariate curve resolution for hyperspectral image analysis: applications to microarray technology},
    18073   volume = {4959},
    18074   address = {San Jose, CA.},
    18075   publisher = {International Society for Optical Engineering},
    18076   author = {Haaland, D. M. and Timlin, J. A. and Sinclair, M. B. and Van Benthem, M. H. and Martinez, M. J. and Aragon, A. D. and Werner-Washburne, M.}
    18077 }
    18078 @article{Geisler2007,
    18079   number = {2},
    18080   year = {2007},
    18081   title = {Resolution of lambda/10 in fluorescence microscopy using fast single molecule photo-switching},
    18082   pages = {223-226},
    18083   journal = {Applied Physics a-Materials Science and Processing},
    18084   volume = {88},
    18085   author = {Geisler, C. and Schonle, A. and von Middendorff, C. and Bock, H. and Eggeling, C. and Egner, A. and Hell, S. W.}
    18086 }
    18087 @article{Metzger1992,
    18088   year = {1992},
    18089   title = {Transmembrane signalling: the joy of aggregation},
    18090   pages = {1477-1487},
    18091   journal = {Journal of Immunology },
    18092   volume = {149},
    18093   author = {Metzger, H.}
    18094 }
    18095 @article{Hanser2004,
    18096   year = {2004},
    18097   title = {Phase-retrieved pupil functions in wide-field fluorescence microscopy},
    18098   pages = {32-48},
    18099   journal = {Journal of Microscopy-Oxford},
    18100   volume = {216},
    18101   author = {Hanser, B. M. and Gustafsson, M. G. L. and Agard, D. A. and Sedat, J. W.}
    18102 }
    18103 @book{Bharucha-Reid1960,
    18104   year = {1960},
    18105   title = {Elements of the Theory of Markov Processes and Their Applications},
    18106   publisher = {New York: McGraw-Hill},
    18107   author = {Bharucha-Reid, A. T}
    18108 }
    18109 @article{Herring2010,
    18110   year = {2010},
    18111   title = {Coherent electron interference from amorphous
    18112 TEM specimens},
    18113   journal = {Journal of Electron Microscopy},
    18114   author = {Herring, R.A. and Saitoh, K. and Tanaka, N. and Tanji, T.}
    18115 }
    18116 @article{Schmidt2008,
    18117   number = {6},
    18118   year = {2008},
    18119   title = {Spherical nanosized focal spots unravels the interior of cells},
    18120   pages = {539-544},
    18121   journal = {Nature Methods},
    18122   volume = {5},
    18123   author = {Schmidt, R. and Wurm, C.A. and Jakobs, S. and Engelhardt, J. and Egner, A. and Hell, S.W.}
    18124 }
    18125 @article{Kner2009,
    18126   number = {5},
    18127   year = {2009},
    18128   title = {Super-resolution video microscopy of live cells by structured illumination},
    18129   pages = {339-344},
    18130   journal = {Nature Methods},
    18131   volume = {6},
    18132   author = {Kner, P. and Chhun, B.B. and Griffs, E.R. and Winoto, L. and Gustafsson, M.G.L.}
    18133 }
    18134 @article{Heintzmann2009,
    18135   year = {2009},
    18136   title = {Subdiffraction resolution in continuous samples},
    18137   pages = {362-364},
    18138   journal = {Nature Photonics},
    18139   volume = {3},
    18140   author = {Heintzmann, R. and Gustafsson, M.G.L.}
    18141 }
    18142 @article{Boulanger2010,
    18143   number = {2},
    18144   year = {2010},
    18145   title = {Patch-Based Nonlocal Functional for Denoising
    18146 Fluorescence Microscopy Image Sequences},
    18147   pages = {442-454},
    18148   journal = {IEEE Transactions on Medical Image Processing},
    18149   volume = {29},
    18150   author = {Boulanger, J. and Kervrann, C. and Bouthemy, P. and Elbau, P. and Sibarita, J.-B. and Salamero, J.}
    18151 }
    18152 @article{Carlton2010,
    18153   year = {2010},
    18154   title = {Fast live simultaneous multiwavelength four-dimensional optical microscopy},
    18155   journal = {Proceedings of the National Academy of Sciences},
    18156   author = {Carlton, P.M. and Boulanger, J. and Kervrann, C. and Sibarita, J.-B. and Salamero, J. and Gordon-Messer, S. and Bressan, D. and Haber, J.E. and Haase, S. and Shao, L. and Winoto, L. and Matsuda, A. and Kner, P. and Uzawa, S. and Gustafsson, M.G.F. and Kam, Z. and Agard, D.A. and Sedat, J.W.}
    18157 }
    18158 @article{Grabenbauer2005,
    18159   year = {2005},
    18160   title = {Correlative microscopy and electron tomography of GFP through photooxidation},
    18161   pages = {857-862},
    18162   journal = {Nature Methods},
    18163   volume = {2},
    18164   author = {Grabenbauer, M. and Geerts, W.J. and Fernadez-Rodriguez, J. and Hoenger, A. and Koster, A.J. and Nilsson, T.}
    18165 }
    18166 @article{Folling2008,
    18167   year = {2008},
    18168   title = {Fluorescence nanoscopy by ground-state depletion and single-molecule return},
    18169   pages = {943-945},
    18170   journal = {Nature Methods},
    18171   volume = {5},
    18172   author = {{F\"olling}, J. and Bossi, M. and Bock, H. and Medda, R. and Wurm, C.A. and Hein, B. and Jacobs, S. and Eggeling, C. and Hell, S.W.}
    18173 }
    18174 @article{Agronskaia2008,
    18175   number = {2},
    18176   year = {2008},
    18177   title = {Integrated fluorescence and transmission electron microscopy},
    18178   pages = {183-189},
    18179   journal = {Journal of Structural Biology},
    18180   volume = {164},
    18181   author = {Agronskaia, A.V. and Valtentijn, J.A. and Driel, L.F. van and Schneidenberg, C. and Humbel, B.M. and Henegouwen, P. and Verkleij, A.J. and Koster, A.J. and Gerritsen, H.C.}
    18182 }
    18183 @article{Aguet2009,
    18184   number = {8},
    18185   year = {2009},
    18186   title = {Super-resolution orientation estimation and localization of fluorescent dipoles using 3-D steerable filters},
    18187   pages = {6829},
    18188   journal = {Optics Express},
    18189   volume = {17},
    18190   author = {Aguet, F. and Geissbuhler, S. and Marki, I. and Lasser, T. and Unser, M.}
    18191 }
    18192 @article{Giepmans2005,
    18193   year = {2005},
    18194   title = {Correlated light and electron microscopic imaging of multiple endogenous proteins using quantum dots},
    18195   pages = {743-749},
    18196   journal = {Nature Methods},
    18197   volume = {10},
    18198   author = {Giepmans, B.N.G. and Deerinck, T.J. and Smarr, B.L. and Jones, Y.Z. and Ellisman, M.H.}
    18199 }
    18200 @article{Stallinga2004,
    18201   number = {9},
    18202   year = {2004},
    18203   title = {Light distribution close to focus in biaxially       birefringent media
    18204 },
    18205   pages = {1785-1788},
    18206   journal = {Journal of the Optical Society of America A},
    18207   volume = {21},
    18208   author = {Stallinga, S.}
    18209 }
    18210 @article{Wang2010,
    18211   number = {4},
    18212   year = {2010},
    18213   title = {In vitro and in vivo imaging with quantum dots },
    18214   pages = {1397-1415},
    18215   journal = {Analytical and Bioanalytical Chemistry },
    18216   volume = {397},
    18217   author = {Wang, C. and Gao, X. and Su, X.}
    18218 }
    18219 @article{Jamieson2007,
    18220   number = {31},
    18221   year = {2007},
    18222   title = {Biological applications of quantum dots },
    18223   pages = {4717-4732},
    18224   journal = {Biomaterials},
    18225   volume = {28},
    18226   author = {Jamieson, T. and Bakhshi, R. and Petrova, D. and Pocock, R. and Imani, M. and Seifalian, A.M.}
    18227 }
    18228 @article{Abraham2009,
    18229   number = {26},
    18230   year = {2009},
    18231   title = {Quantitative study of single molecule location estimation techniques },
    18232   pages = {23352-23373},
    18233   journal = {Optics Express},
    18234   volume = {17},
    18235   author = {Abraham, A.V. and Ram, S. and Chao, J. and Ward, E.S. and Ober, R.J.}
    18236 }
    18237 @article{Chao2009,
    18238   number = {26},
    18239   year = {2009},
    18240   title = {A comparative study of high resolution microscopy imaging modalities using a three-dimensional resolution measure},
    18241   pages = {24377-24401},
    18242   journal = {Optics Express},
    18243   volume = {17},
    18244   author = {Chao, J. and Ram, S. and Ward, E.S. and Ober, R.J.}
    18245 }
    18246 @article{Ram2008,
    18247   number = {12},
    18248   year = {2008},
    18249   title = {High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells },
    18250   pages = {6025-6043},
    18251   journal = {Biophysical Journal},
    18252   volume = {95},
    18253   author = {Ram, S. and Prabhar, P. and Chao, J. and Ward, E.S. and Ober, R.J.}
    18254 }
    18255 @article{Wilson1997,
    18256   year = {1997},
    18257   title = {The imaging of dielectric point scatterers in conventional and confocal polarisation microscopes},
    18258   pages = {298-313},
    18259   journal = {Optics Communications},
    18260   volume = {141},
    18261   author = {Wilson, T. and Juskaitis, R. and Higdon, P.D.}
    18262 }
    18263 @article{Stallinga2010,
    18264   number = {24},
    18265   year = {2010},
    18266   title = {Accuracy of the {Gaussian} Point Spread Function model in 2D localization microscopy
    18267 },
    18268   pages = {24461-24476},
    18269   note = {accepted},
    18270   journal = {Optics Express},
    18271   volume = {18},
    18272   author = {Stallinga, S. and Rieger, B.}
    18273 }
    18274 @article{Barrett1995,
    18275   number = {5},
    18276   year = {1995},
    18277   title = {Objective assessment of image quality. II. Fisher information, Fourier crosstalk, and
    18278 figures of merit for task performance},
    18279   pages = {834-853},
    18280   journal = {Journal of the Optical Society of America A},
    18281   volume = {12},
    18282   author = {Barrett, H. H. and Denny, J.L. and Wagner, R.F. and Myers, K.J.}
    18283 }
    18284 @article{Foreman2007,
    18285   number = {21},
    18286   year = {2007},
    18287   title = {Photon statistics in single molecule
    18288 orientational imaging},
    18289   pages = {13597-13606},
    18290   journal = {Optics Express},
    18291   volume = {15},
    18292   author = {Foreman, M.R. and Sherif, S.S. and {T\"or\"ok}, P.}
    18293 }
    18294 @article{Haeberle2003,
    18295   number = {22},
    18296   year = {2003},
    18297   title = {Point spread function of optical microscopes
    18298 imaging through stratified media},
    18299   pages = {2964-2969},
    18300   journal = {Optics Express},
    18301   volume = {11},
    18302   author = {{Haeberl\'e}, O. and Ammar, M. and Furukawa, H. and Tenjimbayashi, K. and {T\"or\"ok}, P.}
    18303 }
    18304 @article{McGuire1994,
    18305   number = {22},
    18306   year = {1994},
    18307   title = {Polarization aberrations.
    18308 1. Rotationally symmetric optical systems},
    18309   pages = {5080-5100},
    18310   journal = {Applied Optics},
    18311   volume = {33},
    18312   author = {McGuire, J.P. Jr. and Chipman, R.A.}
    18313 }
    18314 @article{McGuire1994a,
    18315   number = {22},
    18316   year = {1994},
    18317   title = {Polarization aberrations.
    18318 2. Tilted and decentered optical systems},
    18319   pages = {5101-5107},
    18320   journal = {Applied Optics},
    18321   volume = {33},
    18322   author = {McGuire, J.P. Jr. and Chipman, R.A.}
    18323 }
    18324 @article{Muller2005,
    18325   year = {2005},
    18326   title = {Measures of performance in nonlinear estimation
    18327 tasks: prediction of estimation performance at low signal-to-noise ratio},
    18328   pages = {3697-3715},
    18329   journal = {Physics in Medicine and Biology},
    18330   volume = {50},
    18331   author = {{M\"uller}, S.P. and Abbey, C.K. and Rybicki, F.J. and Moore, S.C. and Kijewski, M.F.}
    18332 }
    18333 @article{Ji2010,
    18334   number = {2},
    18335   year = {2010},
    18336   title = {Adaptive optics via pupil segmentation for
    18337 high-resolution imaging in biological tissues},
    18338   pages = {141-150},
    18339   journal = {Nature Methods},
    18340   volume = {7},
    18341   author = {Ji, N. and Milkie, D.E. and Betzig, E.}
    18342 }
    18343 @article{Wombacher2010,
    18344   number = {9},
    18345   year = {2010},
    18346   title = {Live-cell super-resolution imaging with trimethoprim conjugates},
    18347   pages = {717-722},
    18348   journal = {Nature Methods},
    18349   volume = {7},
    18350   author = {Wormbacher, R. and Heidbreder, M. and Linde, S. van de and Sheetz, M.P. and Heilemann, M. and Cornish, V.W. and Sauer, M.}
    18351 }
    18352 @article{Henriques2010,
    18353   number = {5},
    18354   year = {2010},
    18355   title = {Quick{PALM}: 3D real-time photoactivation nanoscopy image processing in {ImageJ}},
    18356   pages = {339-340},
    18357   journal = {Nature Methods},
    18358   volume = {7},
    18359   author = {Henriques, R. and Lelek, M. and Fornasiero, E.F. and Valtorta, F. and Zimmer, C. and Mhlanga, M.M.}
    18360 }
    18361 @article{Dertinger2009,
    18362   number = {52},
    18363   year = {2009},
    18364   title = {Fast, background-free, {3D} super-resolution optical fluctuation imaging {(SOFI)}},
    18365   pages = {22287-22292},
    18366   journal = {Proceedings of the National Academy of Sciences},
    18367   volume = {106},
    18368   author = {Dertinger, T. and Colyer, R. and Iyer, G. and Weiss, S. and Enderlein, J.}
    18369 }
    18370 @article{Dertinger2010,
    18371   number = {18},
    18372   year = {2010},
    18373   title = {Achieving increased resolution and more pixels
    18374 with Superresolution Optical Fluctuation
    18375 Imaging {(SOFI)}},
    18376   pages = {18875-11885},
    18377   journal = {Optics Express},
    18378   volume = {18},
    18379   author = {Dertinger, T. and Colyer, R. and Vogel, R. and  Enderlein, J. and Weiss, S.}
    18380 }
    18381 @article{Landau1967,
    18382   number = {1},
    18383   year = {1967},
    18384   title = {Necessary  density conditions for sampling and interpolation of certain entire function},
    18385   pages = {37-52},
    18386   journal = {Acta Mathematica},
    18387   volume = {117},
    18388   author = {Landau, H.}
    18389 }
    18390 @article{Heilemann2008,
    18391   number = {33},
    18392   year = {2008},
    18393   title = {Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes},
    18394   pages = {6172-6176},
    18395   journal = {Angewannte Chemie},
    18396   volume = {47},
    18397   author = {Heilemann, M. and Linde, S. van de and {Sch\"uttpelz}, M. and Kasper, R. and Seefeldt, B. and Mukherjee, A. and Tinnefeld, P. and Sauer, M.}
    18398 }
    18399 @article{Gustafsson2000,
    18400   number = {2},
    18401   year = {2000},
    18402   title = {Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy},
    18403   pages = {82-87},
    18404   journal = {Journal of Microscopy},
    18405   volume = {198},
    18406   author = {Gustafsson, M.G.L.}
    18407 }
    18408 @article{Dedecker2007,
    18409   year = {2007},
    18410   title = {Orientational effects in the excitation
    18411 and de-excitation of single molecules interacting with donut-mode laser beams},
    18412   pages = {3372-3383},
    18413   journal = {Optics Express},
    18414   volume = {15},
    18415   author = {Dedecker, P. and Muls, B. and Hofkens, J. and  Enderlein, J. and Hotta, J. }
    18416 }
    18417 @article{Smal2010,
    18418   year = {2010},
    18419   title = {Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy},
    18420   pages = {282-301},
    18421   journal = {IEEE Transactions on Medical Imaging},
    18422   volume = {29},
    18423   author = {Smal, I. and Loog, M. and Niessen, W.J.  and  Meijering, E.}
    18424 }
    18425 @article{Akhmanova2008,
    18426   year = {2008},
    18427   title = {Tracking the ends: a dynamic protein network controls the fate of microtubule tips},
    18428   pages = {309-322},
    18429   journal = {Nature Reviews Molecular Cell Biology},
    18430   volume = {9},
    18431   author = {Akhmanova, A. and  Steinmetz, M.O.}
    18432 }
    18433 @article{Heuvel2008,
    18434   year = {2008},
    18435   title = {Single-Molecule Observation of Anomalous Electrohydrodynamic Orientation of Microtubules
    18436 },
    18437   pages = {118301},
    18438   journal = {Physical Review Letters},
    18439   volume = {101},
    18440   author = {Heuvel, M.G.L. van den and Bondesan, R. and Cosentino Langomarsino, M. and Dekker, C.}
    18441 }
    18442 @article{Lupini2008,
    18443   number = {6},
    18444   year = {2008},
    18445   title = {Rapid autotuning for crystalline specimens from an inline hologram},
    18446   pages = {195-201},
    18447   journal = {Journal of Electron Microscopy},
    18448   volume = {57},
    18449   author = {Lupini, A.R. and Pennycook, S.J.}
    18450 }
    18451 @article{Hell2009a,
    18452   year = {2009},
    18453   title = {Diffraction-unlimited three-dimensional optical
    18454 nanoscopy with opposing lenses},
    18455   pages = {381-387},
    18456   journal = {Nature Photonics},
    18457   volume = {3},
    18458   author = {Hell, S.W. and Schmidt, R. and Egner, A.}
    18459 }
    18460 @article{Manghi2010,
    18461   year = {2010},
    18462   title = {Probing {DNA} conformational changes
    18463 with high temporal resolution by tethered
    18464 particle motion},
    18465   pages = {046003},
    18466   journal = {Physical Biology},
    18467   volume = {7},
    18468   author = {Manghi, M. and Tardin, C. and Baglio, J. and Rousseau, P. and Salome, L. and Destainville, N.}
    18469 }
    18470 @article{Destainville2009,
    18471   number = {11},
    18472   year = {2009},
    18473   title = {Microscopic Mechanism for Experimentally Observed Anomalous Elasticity of DNA in Two Dimensions},
    18474   pages = {4464-4469},
    18475   journal = {Biophysical Journal},
    18476   volume = {96},
    18477   author = {Destainville, Nicolas and Manghi, Manoel and Palmeri, John}
    18478 }
    18479 @article{Barthel2010,
    18480   year = {2010},
    18481   title = {Aberration measurement in {HRTEM}: {Implementation} and diagnostic use of numerical procedures for the highly precise recognition of diffractogram patterns},
    18482   pages = {27-46},
    18483   journal = {Ultramicroscopy},
    18484   volume = {111},
    18485   author = {Barthel, J. and Thust, A.}
    18486 }
    18487 @article{Perfetti2010,
    18488   year = {2010},
    18489   title = {X-ray micro tomography and image analysis as complementary methods for morphological characterization and coating thickness measurement
    18490 of coated particles},
    18491   pages = {663-675},
    18492   journal = {Advanced Powder Technology},
    18493   volume = {21},
    18494   author = {Perfetti, G. and Casteele, E. van de and Rieger, B. and Wildeboer, W.J. and Meesters, G.M.H.}
    18495 }
    18496 @article{Stallinga2005,
    18497   year = {2005},
    18498   title = {Compact description of substrate-related aberrations in high numerical aperture optical disk readout},
    18499   pages = {949-958},
    18500   journal = {Applied Optics},
    18501   volume = {44},
    18502   author = {Stallinga, S.}
    18503 }
    18504 @article{Muhlich2009,
    18505   number = {7},
    18506   year = {2009},
    18507   title = {Analysis of Multiple Orientations},
    18508   pages = {1424-1437},
    18509   journal = {IEEE Transactions on Image Processing},
    18510   volume = {18},
    18511   author = {M{\"u}hlich, M. and Aach, T.}
    18512 }
    18513 @inproceedings{Franken2007,
    18514   series = {4485},
    18515   year = {2007},
    18516   title = {Nonlinear diffusion on the 2D Euclidean Motion group},
    18517   booktitle = {LNCS},
    18518   pages = {461-472},
    18519   author = {Franken, E.M. and Duits, R. and Haar Romenij, B.M. ter}
    18520 }
    18521 @inproceedings{Franken2006,
    18522   series = {3954},
    18523   year = {2006},
    18524   title = {An Efficient Method for Tensor Voting using Steerable Filters},
    18525   booktitle = {LNCS},
    18526   pages = {228-240},
    18527   author = {Franken, E.M.  and  Almsick, M.A. van and  Rongen, P.M.J. and Florack, L.M.J. and  Haar Romenij, B.M. ter}
    18528 }
    18529 @inproceedings{Faas2007,
    18530   series = {4678},
    18531   year = {2007},
    18532   title = {A crossing detector based on the structure tensor},
    18533   booktitle = {LNCS},
    18534   pages = {212-220},
    18535   editor = {Blanc-Talon, J.},
    18536   author = {Faas, F.G.A. and Vliet, L.J. van}
    18537 }
    18538 @inproceedings{Herberthsson2006,
    18539   series = {SSBA},
    18540   month = {March},
    18541   year = {2006},
    18542   title = {Pairs of Orientation in the Plane},
    18543   booktitle = {Proceedings of the {SSBA} Symposium on Image Analysis},
    18544   author = {Herberthsson, M. and Brun, A. and Knutsson, H.}
    18545 }
    18546 @book{Stein1971,
    18547   year = {1971},
    18548   title = {Introduction to Fourier Analysis on Euclidean Spaces},
    18549   publisher = {Princeton University Press},
    18550   author = {Stein, E. and Stein, E.M. and Weiss, G.}
    18551 }
    18552 @article{Cordes2010a,
    18553   year = {2010},
    18554   title = {Resolving Single-Molecule Assembled Patterns with Superresolution Blink-Microscopy},
    18555   pages = {645-651},
    18556   journal = {NanoLetters},
    18557   volume = {10},
    18558   author = {Cordes, T. and Strackharn, M. and Stahl, S.W.  and Summerer, W. and Steinhauer, C. and  Forthmann, C. and Puchner, E.M. and Vogelsang, J. and Gaub H.E. and  Tinnefeld, P.}
    18559 }
    18560 @article{Luengo2010,
    18561   number = {6},
    18562   year = {2010},
    18563   title = {Constrained and Dimensionality-Independent Path Openings},
    18564   pages = {1587-1595},
    18565   journal = {IEEE Transactions on Image Processing},
    18566   volume = {19},
    18567   author = {Luengo Hendriks, C.L.}
    18568 }
    18569 @article{Luengo2007a,
    18570   year = {2007},
    18571   title = {Improving the accuracy of isotropic granulometries},
    18572   pages = {865-872},
    18573   journal = {Pattern Recognition Letters},
    18574   volume = {28},
    18575   author = {Luengo Hendriks, C.L. and Kempen, G.M.P. and Vliet, L.J. van}
    18576 }
    18577 @article{Luengo2007,
    18578   number = {19},
    18579   year = {2007},
    18580   title = {Automatic channel unmixing for high-throughput quantitative analysis of fluorescence images},
    18581   pages = {12306-123117},
    18582   journal = {Optics Express},
    18583   volume = {15},
    18584   author = {Luengo Hendriks, C.L. and {Ker\"a}nen, S.V.E. and Biggin, M.D. and Knowles, D.W.}
    18585 }
    18586 @article{Caarls2010,
    18587   year = {2010},
    18588   title = {Characterization of Coupled Ground State and Excited State Equilibria by Fluorescence Spectral Deconvolution},
    18589   pages = {181-190},
    18590   journal = {Journal of Fluorescence},
    18591   volume = {20},
    18592   author = {Caarls, W. and Celej, M.S. and Demchenko, A.P. and Jovin, T.M.}
    18593 }
    18594 @article{Celej2009,
    18595   year = {2009},
    18596   title = {A Triple-Emission Fluorescent Probe Reveals Distinctive Amyloid Fibrillar Polymorphism of Wild-Type R-Synuclein and Its Familial Parkinson's Disease Mutants},
    18597   pages = {7465-7472},
    18598   journal = {Biochemistry},
    18599   volume = {48},
    18600   author = {Celej, M.S. and Caarls, W. and Demchenko, A.P. and Jovin, T.M.}
    18601 }
    18602 @article{Nagy2010,
    18603   number = {38},
    18604   year = {2010},
    18605   title = {Distribution of resting and ligand-bound {ErbB1} and {ErbB2} receptor tyrosine kinases in living cells using number and brightness analysis},
    18606   pages = {16524-16529},
    18607   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    18608   volume = {107},
    18609   author = {Nagy, P. and Claus, J. and Jovin, T.M. and Arndt-Jovin, D.J.}
    18610 }
    18611 @article{Finzi2010,
    18612   number = {25},
    18613   year = {2010},
    18614   title = {Single-molecule Approaches to Probe the Structure, Kinetics, and Thermodynamics of Nucleoprotein Complexes That Regulate Transcription},
    18615   pages = {18973-18978},
    18616   journal = {JOURNAL OF BIOLOGICAL CHEMISTRY},
    18617   volume = {285},
    18618   author = {Finzi, L. and Dunlap, D.D.}
    18619 }
    18620 @article{Engelhardt NanoLett 2011,
    18621   year = {2010},
    18622   title = {Molecular Orientation Affects Localization Accuracy in Superresolution Far-Field Fluorescence Microscopy},
    18623   pages = {209-213},
    18624   journal = {NanoLetters},
    18625   volume = {11},
    18626   author = {Engelhardt, J. and Keller, J. and Hoyer, P. and Reuss, M. and Staudt, T. and Hell, S.W.}
    18627 }
    18628 @article{Lindner2011,
    18629   year = {2011},
    18630   title = {Force-free measurements of the conformations of {DNA} molecules tethered to a wall},
    18631   pages = {011916},
    18632   journal = {Physical Review E},
    18633   volume = {83},
    18634   author = {Lindner, M. and Nir, G. and Medalion, S. and Dietrich, H.R.C. and Rabin, Y. and Garini, Y.}
    18635 }
    18636 @article{Beleggia2004,
    18637   year = {2004},
    18638   title = {On the transport of intensity technique for phase retrieval},
    18639   pages = {37-49},
    18640   journal = {Ultramicroscopy},
    18641   volume = {102},
    18642   author = {Beleggia, M. and Schofield, M.A. and Volkov, V.V. and Zhu, Y.}
    18643 }
    18644 @article{Bronnikov2002,
    18645   year = {2002},
    18646   title = {Theory of quatitative phase-contrast computed tomography},
    18647   pages = {472-480},
    18648   journal = {Journal of the Optical Society of America A},
    18649   volume = {19},
    18650   author = {Bronnikov, A.V.}
    18651 }
    18652 @article{Donoho2006,
    18653   number = {4},
    18654   year = {2006},
    18655   title = {Compressed Sensing},
    18656   pages = {1289-1306},
    18657   journal = {IEEE Transactions of Information Theory},
    18658   volume = {52},
    18659   author = {Donoho, D.L.}
    18660 }
    18661 @article{Jesacher2005,
    18662   year = {2005},
    18663   title = {Shadow Effects in Spiral Phase Contrast Microscopy},
    18664   pages = {233902},
    18665   journal = {Physics Review Letters},
    18666   volume = {94},
    18667   author = {Jesacher, A. and {F\"urhapter}, S. and Bernet, S. and Ritsch-Marte, M.}
    18668 }
     1340  title = {Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelect
Note: See TracChangeset for help on using the changeset viewer.