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    487487@article{Cohen1997,
    488488  author = {Cohen, L.D. and Kimmel, R.},
    489   title = {Global minimum for active contour models: A minimal path approach},
    490   journal = {International Journal of Computer Vision},
    491   year = {1997},
    492   volume = {24},
    493   number = {1},
    494   pages = {57-58}
    495 }
    496 @inproceedings{Geusebroek2002,
    497   author = {Geusebroek, J.M. and Smeulders, A.W.M. and Weijer, J. van de},
    498   title = {Fast Anisotropic {G}auss Filtering},
    499   year = {2002},
    500   volume = {2350},
    501   pages = {99--112},
    502   editor = {Heyden, A.},
    503   publisher = {Springer-Verlag},
    504   series = {Lecture Notes in Computer Science},
    505   booktitle = {Proceedings of the ECCV 2002}
    506 }
    507 @article{Geusebroek2003,
    508   author = {Geusebroek, J.M. and Smeulders, A.W.M. and Weijer, J. van de},
    509   title = {Fast anisotropic gauss filtering},
    510   journal = {IEEE Transactions on Image Processing},
    511   year = {2003},
    512   volume = {12},
    513   number = {8},
    514   pages = {938-943}
    515 }
    516 @article{Cohen1992,
    517   author = {Cohen, F.S. and Fan, Z.},
    518   title = {Maximum Likelihood Unsupervised Textured Image Segmentation},
    519   journal = {CVGIP: Graphical Models and Image Processing},
    520   year = {1992},
    521   volume = {54},
    522   number = {3},
    523   pages = {239--251},
    524   month = {May}
    525 }
    526 @article{Geusebroek2000,
    527   author = {Geusebroek, J.M. and Cornelissen, F. and Smeulders, A.W.M. and Geerts, H.},
    528   title = {Robust autofocusing in microscopy},
    529   journal = {Cytometry},
    530   year = {2000},
    531   volume = {39},
    532   number = {1},
    533   pages = {1-9}
    534 }
    535 @article{Delon2004,
    536   author = {Delon, A. and Usson, Y. and Derouard, J. and Biben, T. and Souchier, C.},
    537   title = {Photobleaching, Mobility, and Compartmentalisation: Inferences in Fluorescence Correlation Spectroscopy},
    538   journal = {Journal of Fluorescence},
    539   volume = {14},
    540   number = {3},
    541   pages = {255-267}
    542 }
    543 @article{Aldroubi2001,
    544   author = {Aldroubi, A. and {Gr\"ochenig}, K.},
    545   title = {Nonuniform Sampling and Reconstruction in Shift-Invariant Spaces},
    546   journal = {SIAM Review},
    547   year = {2001},
    548   volume = {43},
    549   number = {4},
    550   pages = {585--620}
    551 }
    552 @article{Barash2002,
    553   author = {Barash, D.},
    554   title = {A Fundamental Relationship between Bilateral Filtering, Adaptive Smoothing, and the Nonlinear Diffusion Equation},
    555   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    556   year = {2002},
    557   volume = {24},
    558   number = {6},
    559   pages = {844--847}
    560 }
    561 @inproceedings{Lorenz1997,
    562   author = {Lorenz, C. and Carlsen, I.-C. and Buzug, T.M. and Fassnacht, C. and Weese, J.},
    563   title = {A Multi-scale Line Filter with Automatic Scale Selection based on the {Hessian} Matrix for Medical Image Segmentation},
    564   year = {1997},
    565   volume = {1252},
    566   pages = {152--163},
    567   editor = {Haar Romeny, B.M. ter and Florack, L. and Koenderink, J.J. and Viergever, M.A.},
    568   publisher = {Springer},
    569   series = {Lecture Notes in Computer Science},
    570   address = {Utrecht, The Netherlands},
    571   booktitle = {Scale-Space Theory in Computer Vision, First International Conference}
    572 }
    573 @article{Leavers2000a,
    574   author = {Leavers, V.F.},
    575   title = {Use of the Two-Dimensional {Radon} Transform to Generate a Taxonomy of Shape for the Characterization of Abrasive Powder Particles},
    576   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    577   year = {2000},
    578   volume = {22},
    579   number = {12},
    580   pages = {1411--1423},
    581   month = {December},
    582   annote = {key_radon}
    583 }
    584 @book{Singh1992,
    585   author = {Singh, A.},
    586   title = {Optic Flow Computation: A Unified Perspective},
    587   year = {1992},
    588   publisher = {IEEE Computer Society Press}
    589 }
    590 @article{Foerster1948,
    591   author = {{F\"orster}, T.},
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    598 }
    599 @article{Bigun1997,
    600   author = {{Big\"un}, J.},
    601   title = {Pattern Recognition in Images by Symmetries and Coordinate Transformations},
    602   journal = {Computer Vision and Image Understanding},
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    606   pages = {290--307}
    607 }
    608 @inproceedings{Bigun1996,
    609   author = {{Big\"un}, J.},
    610   title = {Coordinate Transformations, Symmetries, and {GHT}},
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    613   pages = {197--201},
    614   month = {16--19 September},
    615   booktitle = {Proceedings of the International Conference on Image Processing}
    616 }
    617 @inproceedings{Bigun1994,
    618   author = {{Big\"un}, J.},
    619   title = {Speed, frequency, and orientation tuned 3-D Gabor filterbanks and their design},
    620   pages = {C-184--187},
    621   publisher = {IEEE Computer Society},
    622   booktitle = {Proceedings of International Conference on Pattern Recognition, ICPR, Jerusalem}
    623 }
    624 @book{Golub1996,
    625   author = {G.H. Golub and C.F. van Loan},
    626   title = {Matrix Computations},
    627   year = {1996},
    628   publisher = {John Hopkins University Press},
    629   address = {Baltimore},
    630   edition = {3}
    631 }
    632 @article{Jeulin1989,
    633   author = {Jeulin, D.},
    634   title = {Morphological Modeling of Images by Sequential Random Functions},
    635   journal = {Signal Processing},
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    639 }
    640 @article{Kass1988,
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    642   title = {Snakes: Active Contour Models},
    643   journal = {International Journal of Computer Vision},
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    645   pages = {321--331}
    646 }
    647 @article{Bigun1991,
    648   author = {{Big\"un}, J. and Granlund, G.H. and Wiklund, J.},
    649   title = {Multidimensional Orientation Estimation with Applications to Texture Analysis and Optical Flow},
    650   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
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    655 }
    656 @inproceedings{Luengo2000a,
    657   author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
    658   title = {Morphological Scale-Space to Differentiate Microstructures of Food Products},
    659   year = {2000},
    660   pages = {289--293},
    661   month = {June 14-16},
    662   editor = {{L.J. van Vliet et al.}},
    663   booktitle = {Proceedings of the third annual conference of the Advanced School for Computing and Imaging (Heijen, the Netherlands)}
    664 }
    665 @article{Bahlmann2000,
    666   author = {Bahlmann, K. and Hell, S.W.},
    667   title = {Depolarization by high aperture focusing},
    668   journal = {Applied Physics Letters},
    669   year = {2000},
    670   volume = {77},
    671   number = {5},
    672   pages = {612-614}
    673 }
    674 @article{Dubuc2001,
    675   author = {Dubuc, B. and Zucker, S.W.},
    676   title = {Complexity, Confusion, and Perceptual Grouping. Part {I}: The Curve-like Representation},
    677   journal = {Journal of Mathematical Imaging and Vision},
    678   year = {2001},
    679   volume = {15},
    680   number = {1--2},
    681   pages = {55--82}
    682 }
    683 @book{Boor2001,
    684   author = {de Boor, Carl},
    685   title = {A Practical Guide to Splines},
    686   year = {2001},
    687   publisher = {Springer-Verlag},
    688   address = {New York}
    689 }
    690 @article{Vermolen2004,
    691   author = {Vermolen, B.J and Garini, Y. and Young, I.T.},
    692   title = {{3D} Restoration With Multiple Images Acquired by a Modified Conventional Microscope},
    693   journal = {Microscopy Research and Technique},
    694   year = {2004},
    695   volume = {64},
    696   pages = {113-125}
    697 }
    698 @article{Kass1987,
    699   author = {Kass, M. and Witkin, A.},
    700   title = {Analyzing Oriented Patterns},
    701   journal = {Computer Vision, Graphics and Image Processing},
    702   year = {1987},
    703   volume = {37},
    704   pages = {362--385}
    705 }
    706 @article{Ocuna1992,
    707   author = {Ocuna, C.O.},
    708   title = {Texture Modeling using {G}ibbs Distribution},
    709   journal = {CVGIP: Graphical Models and Image Processing},
    710   year = {1992},
    711   volume = {54},
    712   number = {3},
    713   pages = {210--222},
    714   month = {May}
    715 }
    716 @book{Jaehne1993,
    717   author = {{J\"ahne}, B.},
    718   title = {Spatio-Temporal Image Processing},
    719   year = {1993},
    720   number = {751},
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    722   publisher = {Springer-Verlag},
    723   series = {Lecture Notes in Computer Science},
    724   address = {Berlin}
    725 }
    726 @misc{Moller2000,
    727   author = {{M\oe ller}, J.},
    728   title = {Aspects of Spatial Statistics, Stochastic Geometry and {Markov} Chain Monte Carlo Methods},
    729   year = {2000},
    730   howpublished = {www},
    731   note = {D. Sc. thesis}
    732 }
    733 @article{Nagy2003,
    734   author = {Nagy, P. and Ardent-Jovin, D.J. and Jovin, T.M.},
    735   title = {Small interfering {RNA}s suppress the expression of endogenous and {GFP}-fused epidermal growth factor receptor (erbB1) and induce apoptosis in erbB1-overexpressing cells},
    736   journal = {Experimental Cell Research},
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    741 }
    742 @book{Greiner1993,
    743   author = {Greiner, W. and Neise, L. and {St\"ocker}, H.},
    744   title = {Theoretische Physik, Thermodynamik und statische Mechanik},
    745   year = {1993},
    746   publisher = {Verlag Harri Deutsch},
    747   address = {Frankfurt},
    748   edition = {2}
    749 }
    750 @inproceedings{Soille2000,
    751   author = {Soille, P.},
    752   title = {Morphological Operators with Discrete Line Segments},
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    756   editor = {Borgefors, G. and {Nystr\"om}, I. and Sanniti di Baja, G.},
    757   publisher = {Springer},
    758   series = {Lecture Notes on Computer Science},
    759   booktitle = {DGCI 2000, 9th Discrete Geometry for Computer Imagery}
    760 }
    761 @article{Ringach1996,
    762   author = {Ringach, D.L. and Shapley, R.},
    763   title = {Spatial and Temporal Properties of Illusory Contours and Amodal Boundary Completion},
    764   journal = {Vision Research},
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    766   volume = {36},
    767   number = {19},
    768   pages = {3037--3050}
    769 }
    770 @article{Horn1981,
    771   author = {Horn, B.K.P. and Schunck, B.G.},
    772   title = {Determining Optical Flow},
    773   journal = {Artificial Intelligence},
    774   year = {1981},
    775   volume = {17},
    776   pages = {185--203}
    777 }
    778 @techreport{Horn1980,
    779   author = {Horn, B.K.P. and Schunck, B.G.},
    780   title = {Determining Optical Flow},
    781   year = {1980},
    782   month = {April},
    783   institution = {Massachusetts Institute of Technology},
    784   note = {A.I. Memo No. 572}
    785 }
    786 @misc{Verbeek1993a,
    787   author = {Verbeek, P.W.},
    788   title = {The {GST} as local mean squared friction},
    789   year = {1993},
    790   howpublished = {private communications}
    791 }
    792 @article{Boutin2000,
    793   author = {Boutin, M.},
    794   title = {Numerically Invariant Signature Curves},
    795   journal = {International Journal of Computer Vision},
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    799   pages = {235--248}
    800 }
    801 @article{Bettini1980,
    802   author = {Bettini, A. and Pozzan, M.R. and Valdevit, E. and Frontali, C.},
    803   title = {Microscopic persistence length of {DNA: Its} relation to average molecular dimensions},
    804   journal = {Biopolymers},
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    808   pages = {1689-1694}
    809 }
    810 @inproceedings{Ginkel2000,
    811   author = {Ginkel, M. van and Vliet, L.J. van and Verbeek, P.W.},
    812   title = {Robust Curvature Estimation by Finding Optimal Circular Segments in Orientation Space},
    813   year = {2000},
    814   pages = {299--306},
    815   month = {June 14-16},
    816   editor = {Vliet, L.J. van and Heijnsdijk, J.W.K. and Kielmann, T. and Knijnenburg, P.M.W.},
    817   booktitle = {ASCI2000, Proc. 6th Annual Conference of the Advanced School for Computing and Imaging (Lommel, Belgium)},
    818   organization = {ASCI, Delft}
    819 }
    820 @inproceedings{Ginkel2001,
    821   author = {Ginkel, M. van and Vliet, L.J. van and Verbeek, P.W. and Kraaijveld, M.A. and Reding, E.P.},
    822   title = {Robust Curve Detection using a Radon Transform in Orientation Space Applied to Fracture Detection in Borehole Images},
    823   year = {2001},
    824   pages = {84--91},
    825   month = {May 30--June 1},
    826   editor = {Lagendijk, R.L. and Heijnsdijk, J.W.J. and Pimentel, A.D. and Wilkinson, M.H.F.},
    827   booktitle = {ASCI2001, Proc. 7th Annual Conference of the Advanced School for Computing and Imaging (Heijen, the Netherlands)},
    828   organization = {ASCI, Delft}
    829 }
    830 @inproceedings{Ginkel2003,
    831   author = {Ginkel, M. van and Kraaijveld, M.A. and Vliet, L.J. van and Reding, E.P. and Verbeek, P.W. and Lammers, H.J.},
    832   title = {Robust Curve Detection Using a {Radon} Transform in Orientation Space},
    833   year = {2003},
    834   pages = {125--132},
    835   month = {June 29--July 2},
    836   editor = {{Big\"un}, J. and Gustavsson, T.},
    837   publisher = {Springer},
    838   series = {Lecture Notes in Computer Science 2749},
    839   booktitle = {Proceedings of the 13th Scandinavian Conference on Image Analysis}
    840 }
    841 @article{Jonker2002,
    842   author = {Jonker, P.P.},
    843   title = {Skeletons in {N} Dimensions using Shape Primitives},
    844   journal = {Pattern Recognition Letters},
    845   year = {2002},
    846   volume = {23},
    847   number = {6},
    848   pages = {677--686}
    849 }
    850 @phdthesis{Ginkel2002,
    851   author = {Ginkel, M. van},
    852   title = {Image Analysis using Orientation Space based on Steerable Filters},
    853   year = {2002},
    854   address = {Delft, The Netherlands},
    855   school = {Delft University of Technology},
    856   note = {digital version available:\\\ {\small\tt http://www.ph.tn.tudelft.nl/PHDTheses/MvGinkel/thesis\_vanginkel.html}}
    857 }
    858 @article{Chen1989a,
    859   author = {Chen, M.-H. and Yan, P.-F.},
    860   title = {A Multiscaling Approach Based on Morphological Filtering},
    861   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
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    863   volume = {11},
    864   number = {7},
    865   pages = {694--700}
    866 }
    867 @article{Zhou2001a,
    868   author = {Zhou, Z.H. and Liao, W. and Cheng, R.H. and Lawson, J.E. and McCarthy, D.B. and Reed, L.J. and Stoops, J.K.},
    869   title = {Direct Evidence for the Size and Conformational Variability of the Pyruvate Dehydrogenase Complex Revealed by Three-dimensional Electron Microscopy},
    870   journal = {Journal of Biological Chemistry},
    871   year = {2001},
    872   volume = {276},
    873   number = {24},
    874   pages = {21704-21713}
    875 }
    876 @article{Verwer1989,
    877   author = {Verwer, B.J.H. and Verbeek, P.W. and Dekker, S.T.},
    878   title = {An Efficient Uniform Cost Algorithm Applied to Distance Transforms},
    879   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    880   year = {1989},
    881   volume = {11},
    882   number = {4},
    883   pages = {425--429},
    884   month = {April}
    885 }
    886 @techreport{Ginkel2004,
    887   author = {Ginkel, M. van and Luengo Hendriks, C.L. and Vliet, L.J. van},
    888   title = {An short introduction to the Radon and Hough transforms and how they relate to each other},
    889   year = {2003},
    890   month = {December},
    891   institution = {Pattern Recognition Group, Delft University of Technology},
    892   note = {Technical Report PH-2003-03}
    893 }
    894 @inproceedings{Verwer1988,
    895   author = {Verwer, B.J.H.},
    896   title = {Improved metrics in image processing applied to the Hilditch skeleton},
    897   year = {1988},
    898   pages = {137--142},
    899   month = {November},
    900   booktitle = {Proceedings of the 9th IAPR international conference on pattern recognition (ICPR), (Rome, Italy)}
    901 }
    902 @article{Beaucage1997,
    903   author = {Beaucage, G. and Rane, S. and Sukumaran, S. and Satkowski, M.M. and Schechtman, L.A. and Doi, Y.},
    904   title = {Persistence Length of Isotactic Poly(hydroxy butyrate)},
    905   journal = {Macromolecules},
    906   year = {1997},
    907   volume = {30},
    908   pages = {4158-4162}
    909 }
    910 @article{Dyck2004,
    911   author = {Dyck, D. van and Aert, S. van and Dekker, A.J. den},
    912   title = {Physical Limits on Atomic Resolution},
    913   journal = {Microscopy and Microanalysis},
    914   year = {2004},
    915   volume = {10},
    916   pages = {153-157}
    917 }
    918 @article{Dyck2003,
    919   author = {Dyck, D. van and Aert, S. van and Dekker, A.J. den and Bos, A. van den},
    920   title = {Is atomic resolution transmission electron microscopy able to resolve and re ne amorphous structures?},
    921   journal = {Ultramicroscopy},
    922   year = {2003},
    923   volume = {98},
    924   pages = {27-42}
    925 }
    926 @article{Bastiaens1996,
    927   author = {Bastiaens, P.I.H. and Majoul, I.V. and Verveer, P.J. and {S\"oling}, H.-D. and Jovin, T.M.},
    928   title = {Imaging the intracellular trafficking and state of the {AB_5} quaternary structure of cholera toxin},
    929   journal = {The EMBO Journal},
    930   year = {1996},
    931   volume = {15},
    932   number = {16},
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    934 }
    935 @article{Lanzavecchia2005,
    936   author = {Lanzavecchia, S. and Cantele, F. and Bellon, P.L. and Zampighi, L. and Kreman, M. and Wrigth, E. and Zampighi, G.A.},
    937   title = {Conical tomography of freeze-fracture replicas: a method for the study of integral membrane proteins inserted in phospholipid bilayers},
    938   journal = {Journal of Structural Biology},
    939   year = {2005},
    940   volume = {149},
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    942 }
    943 @article{Chang1997,
    944   author = {Chang, S.-H. and Cheng, F.-H. and Hsu, W.-H.and Wu, G.-Z.},
    945   title = {Fast algorithm for point pattern matching: {I}nvariant to translations, rotations and scale changes},
    946   journal = {Pattern Recognition},
    947   year = {1997},
    948   volume = {30},
    949   number = {2},
    950   pages = {311-320}
    951 }
    952 @inproceedings{Froment1999,
    953   author = {Froment, J.},
    954   title = {A Compact and Multiscale Image Model Based on Level Sets},
    955   year = {1999},
    956   pages = {152--163},
    957   publisher = {Springer Verlag},
    958   series = {Lecture Notes in Computer Science},
    959   booktitle = {Scale-Space Theories in Computer Vision}
    960 }
    961 @article{Quintanilla1997,
    962   author = {Quintanilla, J. and Torquato, S.},
    963   title = {Clustering in a Continuum Percolation Model},
    964   journal = {Adv. Appl. Probab.},
    965   year = {1997},
    966   volume = {29},
    967   pages = {327--336}
    968 }
    969 @article{Quintanilla1999,
    970   author = {Quintanilla, J. and Torquato, S.},
    971   title = {Percolation for a model of statistically inhomogeneous random media},
    972   journal = {Journal of Chemical Physics},
    973   year = {1999},
    974   volume = {111},
    975   number = {13},
    976   month = {October}
    977 }
    978 @article{Lindeberg1994a,
    979   author = {Lindeberg, T.},
    980   title = {Scale-space Theory: A Basic Tool for Analyzing Structures at Different Scales},
    981   journal = {Journal of Applied Statistics},
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    986 }
    987 @inproceedings{Maragos1999,
    988   author = {Maragos, Petros and Meyer, Fernand},
    989   title = {Nonlinear PDEs and Numerical Algorithms for Modeling Levelings and Reconstruction Filters},
    990   year = {1999},
    991   volume = {1682},
    992   pages = {363--374},
    993   month = {September},
    994   editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
    995   publisher = {Springer-Verlag},
    996   series = {Lecture Notes on Computer Science},
    997   address = {Berlin Heidelberg},
    998   booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)}
    999 }
    1000 @article{Cooley1965,
    1001   author = {Cooley, J.W. and Tukey, J.W.},
    1002   title = {An algorithm for the machine calculation of complex {Fourier} series},
    1003   journal = {Math. Comp.},
    1004   year = {1965},
    1005   volume = {19},
    1006   pages = {297--301},
    1007   month = {April},
    1008   annote = {key_fft}
    1009 }
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    1261 }
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    2596 }
    2597 @book{Hyvarinen2001,
    2598   author = {{Hyv\"arinen}, A. and Karhumen, J. and Oja, E.},
    2599   title = {Independant Component Analysis},
    2600   year = {2001},
    2601   publisher = {Wiley Interscience},
    2602   address = {New York}
    2603 }
    2604 @techreport{Almansa1998,
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    2606   title = {Fingerprint Enhancement by Shape Adaptation of Scale-Space Operators with Automatic Scale Selection},
    2607   year = {1998},
    2608   institution = {University of the Republic of Uruguay},
    2609   annote = {Partial document}
    2610 }
    2611 @article{Hofmann1984,
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    2614   journal = {Journal of Molecular Biology},
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    2621   author = {Aguado, A.S. and Montiel, M.E. and Nixon, M.S.},
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    2623   year = {1996},
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    2627   booktitle = {International Conference on Image Processing}
    2628 }
    2629 @article{Roberts2001,
    2630   author = {Roberts, A.},
    2631   title = {Curvature attributes and their application to 3D interpreted horizons},
    2632   journal = {First Break},
    2633   year = {2001},
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    2636   pages = {85-100},
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    2638 }
    2639 @inproceedings{Vliet1993akort,
    2640   author = {Vliet, L.J. van and Verbeek, P.W. },
    2641   title = {Curvature and Bending Energy in Digitized 2D and 3D Images },
    2642   year = {1993},
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    2646 }
    2647 @article{Koenderink1992b,
    2648   author = {Koenderink, J.J. and Doorn, A.J. van},
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    2650   journal = {Journal of the Optical Society of America A},
    2651   year = {1992},
    2652   volume = {9},
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    2654   pages = {530-538}
    2655 }
    2656 @book{Lakowicz1999,
    2657   author = {Lakowicz, J.R.},
    2658   title = {Principles of Fluorescence Spectroscopy},
    2659   year = {1999},
    2660   publisher = {Kluwer Academic Press},
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    2663 }
    2664 @article{Cardoso1998,
    2665   author = {Cardoso, J.-F.},
    2666   title = {Blind signal separation: statistical principles},
    2667   journal = {Proceedings of the IEEE},
    2668   year = {1998},
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    2670   number = {10},
    2671   pages = {2009-2025}
    2672 }
    2673 @article{Koenderink1992a,
    2674   author = {Koenderink, J.J. and Doorn, A.J. van},
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    2676   journal = {Image and Vision Computing},
    2677   year = {1992},
    2678   volume = {10},
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    2681 }
    2682 @article{Kornprobst1999,
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    2684   title = {Image Sequence Analysis via Partial Differential Equations},
    2685   journal = {Journal of Mathematical Imaging and Vision},
    2686   year = {1999},
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    2689 }
    2690 @article{Shevelev1998,
    2691   author = {Shevelev, I.A.},
    2692   title = {Second-order features extraction in the cat visual cortex: selective and invariant sensitivity of neurons to the shape and orientation of crosses and corners},
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    2697 }
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    2706 }
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    2716 }
    2717 @article{Volkmer2000,
    2718   author = {Volkmer, A. and Subramaniam, V. and Birch, D.J. and Jovin, T.M.},
    2719   title = {One- and two-photon excited fluorescence lifetimes and anisotropy decays of green fluorescent proteins},
    2720   journal = {Biophysical Journal},
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    2725 }
    2726 @article{Bigelow2003,
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    2729   journal = {Optics Letters},
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    2735 }
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    2739   year = {2001},
    2740   volume = {2059},
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    2743   editor = {Arcelli, C. and Cordella, L.P. and Sanniti di Baja, G. },
    2744   publisher = {Springer-Verlag},
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    2748 }
    2749 @book{Kak1988,
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    2754 }
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    2763   publisher = {Springer-Verlag},
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    2767 }
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    2774 @inbook{Hediger2004,
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    2776   title = {Methods for Visualizing Chromatin Dynamics in Living Yeast},
    2777   year = {2004},
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    2779   publisher = {Elsevier Academic Press},
    2780   series = {Methods in Enzymology},
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    2782 }
    2783 @article{Axelrod2001,
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    2786   journal = {Traffic},
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    2788   volume = {2},
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    2790 }
    2791 @article{Kuwahara1980,
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    2798 }
    2799 @inproceedings{Whitworth1999,
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    2802   year = {1999},
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    2805   publisher = {Eagan Press},
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    2807   booktitle = {Bubbles In Food}
    2808 }
    2809 @article{Daugman1988,
    2810   author = {Daugman, J.G.},
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    2813   year = {1988},
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    2818 @book{Rutishauer1990,
    2819   author = {Rutishauer, H.},
    2820   title = {Lectures on numerical mathematics},
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    2822   publisher = {{Birkh\"auser}}
    2823 }
    2824 @article{Nagel1983,
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    2827   journal = {Computer Graphics and Image Processing},
    2828   year = {1983},
    2829   volume = {21},
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    2831 }
    2832 @misc{BaddeleyXXXX,
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    2834   title = {Spatial Sampling and Censoring},
    2835   howpublished = {Some chapter. From www}
    2836 }
    2837 @article{Nagel1986,
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    2840   journal = {IEEE Transactions of Pattern Recognition and Machine Intelligence},
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    2844 }
    2845 @article{Daugman1985,
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    2848   journal = {Journal of the Optical Society of America A},
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    2854 }
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    2857   title = {{XMIPP:} a new generation of an open-source image processing package for electron microscopy},
    2858   journal = {Journal of Structural Biology},
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    2862 }
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    2866   journal = {Journal of Structural Biology},
    2867   year = {2001},
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    2870 }
    2871 @inproceedings{Kerbyson1995,
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    2874   year = {1995},
    2875   pages = {370--374},
    2876   month = {4--6 July},
    2877   booktitle = {Image Processing and Its Applications}
    2878 }
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    2881   title = {A new method for the determination of the wave aberration function for high-resolution {TEM}. {2. Measurement} of the antisymmetric aberrations},
    2882   journal = {Ultramicroscopy},
    2883   year = {2004},
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    2889   title = {The Refined Crystal Structure of Cowpea Mosaic Virus at 2.8 Resolution},
    2890   journal = {Virology},
    2891   year = {1999},
    2892   volume = {265},
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    2894 }
    2895 @book{Mitra2000,
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    2897   title = {Nonlinear Image Processing},
    2898   year = {2000},
    2899   publisher = {Academic Press}
    2900 }
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    2911   journal = {IEEE Transactions on Signal Processing},
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    2917 }
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    2921   year = {2004},
    2922   pages = {200-208},
    2923   editor = {Barillot, C. and Haynor, D.R. and Hellier, P.},
    2924   booktitle = {LNCS 3216, MICCAI'04}
    2925 }
    2926 @article{Aitken1995,
    2927   author = {Aitken, V.C. and Schwartz, H.M.},
    2928   title = {A Comparison of Rotational Representation in Structure and Motion Estimation for Maneuvering Objects},
    2929   journal = {IEEE Transactions on Image Processing},
    2930   year = {1995},
    2931   volume = {4},
    2932   number = {4},
    2933   pages = {516--520}
    2934 }
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    2936   author = {Barber, C.B. and Dobkin, D.P. and Huhdanpaa, H.},
    2937   title = {The Quickhull Algorithm for Convex Hulls},
    2938   journal = {ACM Transactions on Mathematical Software},
    2939   year = {1996},
    2940   volume = {22},
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    2942   pages = {469--483},
    2943   month = {December}
    2944 }
    2945 @book{Wilson1984a,
    2946   author = {Wilson, T. and Sheppard, C.J.R.},
    2947   title = {Theory and Practice of Scanning Optical Microscopy},
    2948   year = {1984},
    2949   publisher = {Academic Press},
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    2952 }
    2953 @misc{Zach2001,
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    2955   title = {Method for detecting geometrical-optical aberrations},
    2956   year = {2001},
    2957   howpublished = {WO 01.56057}
    2958 }
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    2961   title = {Neural Synergy in Visual Grouping: When Good Continuation Meets Common Fate},
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    2981   year = {2005},
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    2986 @misc{Verbeek1999,
    2987   author = {Verbeek, P.W.},
    2988   year = {1999},
    2989   howpublished = {private communications},
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    2991 }
    2992 @article{Cuisenaire1999,
    2993   author = {Cuisenaire, O. and Macq, B.},
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    2995   journal = { Computer Vision and Image Understanding},
    2996   year = {1999},
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    2999   pages = {163-172}
    3000 }
    3001 @inproceedings{Verbeek1995,
    3002   author = {Verbeek, P.W. and Vliet, L.J. van},
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    3004   year = {1995},
    3005   volume = {1},
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    3007   month = {June 6-9},
    3008   editor = {Borgefors, G.},
    3009   booktitle = {9th Scandinavian Conference on Image Analysis (Uppsala, Sweden)}
    3010 }
    3011 @inproceedings{Verbeek1998,
    3012   author = {Verbeek, P.W. and van Vliet, L.J. and van de Weijer, J.},
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    3014   year = {1998},
    3015   pages = {528--533},
    3016   month = {17-20 August},
    3017   editor = {Jain, A.K. and Venkatesh, S. and Lovell, B.C.},
    3018   publisher = {IEEE Computer Society Press, Los Alamitos},
    3019   booktitle = {ICPR'98, Proc. 14th Int. Conference on Pattern Recognition}
    3020 }
    3021 @article{Verbeek1990,
    3022   author = {Verbeek, P.W. and Verwer, B.J.H},
    3023   title = {Shading from shape, the eikonal equation solved by grey-weighted distance transform},
    3024   journal = {Pattern Recognition Letters},
    3025   year = {1990},
    3026   volume = {11},
    3027   pages = {681--690}
    3028 }
    3029 @misc{Verbeek1996,
    3030   author = {Verbeek, P.W.},
    3031   title = {Angular Deconvolution},
    3032   year = {1996},
    3033   howpublished = {Internal Communication}
    3034 }
    3035 @article{Verbeek1994,
    3036   author = {Verbeek, P.W. and Vliet, L.J. van},
    3037   title = {On the location error of curved edges in low-pass filtered {2-D} and {3-D} images},
    3038   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3039   year = {1994},
    3040   volume = {16},
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    3043 }
    3044 @article{Verbeek1993,
    3045   author = {Verbeek, P.W. and Vliet, L.J. van},
    3046   title = {Estimators of {2D} edge length and position, {3D} surface area and position in sampled grey-valued images},
    3047   journal = {BioImaging},
    3048   year = {1993},
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    3052 }
    3053 @inproceedings{Verbeek1992,
    3054   author = {Verbeek, P.W. and Vliet, L.J. van},
    3055   title = {Line and Edge Detection by Symmetry Filters},
    3056   year = {1992},
    3057   volume = {III},
    3058   pages = {749--753},
    3059   month = {August 30-September 3},
    3060   publisher = {IEEE Computer Society Press, Los Alamitos, USA},
    3061   booktitle = {Proc. 11th IAPR Int. Conf. on Pattern Recognition (ICPR11, The Hague, The Netherlands)}
    3062 }
    3063 @article{Griffith1973,
    3064   author = {Griffith, A.K.},
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    3066   journal = {IEEE Transactions on Computers},
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    3075   title = {Some Fields of Applications of Automatic Image Analysis in Civil Engineering},
    3076   journal = {Cement {\&} Concrete Composites},
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    3078   volume = {23},
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    3080 }
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    3084   journal = {Computer Vision, Graphics and Image Processing},
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    3086   volume = {21},
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    3090 }
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    3108   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
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    4685   month = {August}
    4686 }
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    4694   title = {Endosomal compartmentalization in three dimensions: Implications for membrane fusion},
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    4714   howpublished = {IEE Colloquium on {Hough} Transforms}
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    4732 }
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    4782 }
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    4833 }
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    4945 }
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    5726   author = {Dirks, R.W. and Hattinger, C.M. and Molenaar, C. and Snaar, S.P.},
    5727   title = {Synthesis, processing, and transport of {RNA} within the three-dimensional context of the cell nucleus},
    5728   journal = {Crit Rev Eukaryot Gene Expr},
    5729   year = {1999},
    5730   volume = {9},
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    5733 }
    5734 @phdthesis{Kirchgessner2003,
    5735   author = {Kirchgessner, N.},
    5736   title = {Extraktion Physiologischer Koordinatensysteme von Pflanzenwurzeln und {-Bl\"attern} aus Bildsequenzen},
    5737   year = {2003},
    5738   month = {April},
    5739   address = {Heidelberg, Germany},
    5740   school = {Ruprechts-Karls-{Universit\"at} University}
    5741 }
    5742 @article{Vandergheynst2002,
    5743   author = {Vandergheynst, P. and Gobbers, J.-F.},
    5744   title = {Directional Dyadic Wavelet Transforms: Design and Algorithms},
    5745   journal = {IEEE Transactions on Image Processing},
    5746   year = {2002},
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    5751 }
    5752 @article{Meyer2002,
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    5754   title = {A new method for the determination of the wave aberration function for high resolution {TEM} {1. Measurement} of the symmetric aberrations},
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    5759 }
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    5762   title = {Imaging and Tracking of Single {GFP} Molecules in Solution},
    5763   journal = {Biophysical Journal},
    5764   year = {2000},
    5765   volume = {78},
    5766   pages = {2170-2179},
    5767   month = {April}
    5768 }
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    5770   author = {Harris, C. and Stephens, M.},
    5771   title = {A Combined Corner and Edge Detector},
    5772   year = {1988},
    5773   pages = {147--151},
    5774   month = {31 August--2 September},
    5775   booktitle = {Proceedings of the fourth Alvey Vision Conference},
    5776   organization = {University of Manchester}
    5777 }
    5778 @inproceedings{Harris1987,
    5779   author = {Harris, C.G.},
    5780   title = {Determination of Ego-Motion from Matched Points},
    5781   year = {1987},
    5782   booktitle = {Proceedings of the Alvey Vision Conference},
    5783   annote = {Not in collection}
    5784 }
    5785 @article{Muller2001,
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    5789   year = {2001},
    5790   volume = {50},
    5791   number = {3},
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    5793 }
    5794 @misc{Mathematica,
    5795   author = {Wolfram Research},
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    5797   year = {1998},
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    5799 }
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    5802   title = {The essential role of digital signal processing in automated tomography},
    5803   journal = {IEEE Signal Processing Magazine},
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    5808 }
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    5810   author = {Kube, P. and Perona, P.},
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    5815   number = {10},
    5816   pages = {987--999},
    5817   month = {October}
    5818 }
    5819 @article{Bluestein1970,
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    5821   title = {A Linear Filtering Approach to the Computation of Discrete {Fourier} Transform},
    5822   journal = {IEEE Transactions on Audio and Electroacoustics},
    5823   year = {1970},
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    5826   pages = {451--455},
    5827   month = {December},
    5828   annote = {key_fft}
    5829 }
    5830 @article{Danielsson1980,
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    5832   title = {Euclidean Distance Mapping},
    5833   journal = {Computer Graphics and Image Processing},
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    5837 }
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    5840   title = {Visualizing telomere dynamics in living mammalian cells using {PNA} probes},
    5841   journal = {The EMBO Journal},
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    5846 }
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    5849   title = {Diffusion of microspheres in sealed and open microarrays},
    5850   journal = {Microscopy Research and Technique},
    5851   year = {2004},
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    5853   number = {3},
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    5855 }
    5856 @phdthesis{Rieger2004a,
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    5858   title = {Structure from Motion in nD Image Analysis},
    5859   year = {2004},
    5860   address = {Delft, The Netherlands},
    5861   school = {Delft University of Technology},
    5862   note = {digital version available:\\\ {\small\tt http://www.ph.tn.tudelft.nl/Publications/PHDTheses/BRieger/thesis_rieger.html}}
    5863 }
    5864 @misc{Krivanek2003,
    5865   author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.},
    5866   title = {Autoadjusting charged-particle probe-forming apparatus},
    5867   year = {2003},
    5868   howpublished = {US6552340}
    5869 }
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    5872   title = {Structural hierarchy in erythrocruorin, the giant respiratory assemblage of annelids},
    5873   journal = {Biochemistry},
    5874   year = {2000},
    5875   volume = {97},
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    5877 }
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    5880   title = {On curvature estimation of iso-surfaces in 3D gray-value images and the computation of shape descriptors},
    5881   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    5882   year = {2004},
    5883   volume = {26},
    5884   number = {8},
    5885   pages = {1088-1094}
    5886 }
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    5894   annote = {key_radon}
    5895 }
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    5903 }
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    5908 }
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    5916   month = {November}
    5917 }
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    5925 }
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    5933   booktitle = {ASCI'01 (Heijen, The Netherlands)},
    5934   organization = {ASCI}
    5935 }
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    5944 }
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    5948 }
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    5966 }
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    6006 }
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    6037 }
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    6041   year = {1991},
    6042   school = {{Link\"oping} University, Sweden}
    6043 }
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    6101   address = {Vancouver, Canada},
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    6103 }
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    6115   year = {2002},
    6116   address = {Uppsala, Sweden},
    6117   school = {Swedish University of Agricultural Science}
    6118 }
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    6121   title = {Visualisierung - Dynamik und {Komplexit\"at}},
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    6125 }
    6126 @article{Martens1997,
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    6135 }
    6136 @inproceedings{Wheeler2000,
    6137   author = {Wheeler, M. and Zmuda, M. A.},
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    6142   address = {Berlin},
    6143   booktitle = {Proceedings of the IEEE, National Aerospace and Electronics Conference}
    6144 }
    6145 @article{Svensson2002,
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    6152 }
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    6165   year = {1998},
    6166   address = {Delft, The Netherlands},
    6167   school = {Technische Universiteit Delft},
    6168   type = {Thesis}
    6169 }
    6170 @inproceedings{Illers2004a,
    6171   author = {Illers, H. and Broucke, D. van den and Buhr, E.},
    6172   title = {Measurement of correlated noise in images of computed radiography systems and its influence on the detective quantum efficiency},
    6173   year = {2004},
    6174   address = {San Diego, California, USA},
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    6176 }
    6177 @article{Verveer1998a,
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    6181   year = {1998},
    6182   volume = {37},
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    6184   pages = {6240-6239}
    6185 }
    6186 @book{Serra1988,
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    6188   year = {1988},
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    6192 }
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    6219 }
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    6228 }
    6229 @techreport{Calway1991,
    6230   author = {Calway, A.},
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    6232   year = {1991},
    6233   month = {September},
    6234   institution = {{Link\"oping University}},
    6235   note = {LiTH-ISY-I-1243}
    6236 }
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    7270 }
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    7272   author = {Matheron, G.},
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    7685 }
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    7689   year = {2001},
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    7705   title = {The flexibility of {DNA : I. Thermal} fluctuations},
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    7765 }
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    8398 }
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    8417 }
    8418 @mastersthesis{Luengo1998,
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    8443 }
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    8450 }
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    8458 }
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    8467 }
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    8486 }
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    8512 }
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    12573 }
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    12575   author = {Baddeley, D. and Cannell, M.B. and Soeller, C.},
    12576   title = {Visualization of localization microscopy data},
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    12590 }
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