Changeset 517


Ignore:
Timestamp:
09/05/12 17:35:00 (13 years ago)
Author:
qipapers
Message:

commit via qipapers

Files:
2 edited

Legend:

Unmodified
Added
Removed
  • qipapers.bib

    r516 r517  
    18471847  month = {August},
    18481848  year = {1994},
    1849   title = {A New Technique for Twiddle-Factor Elimination in Multidimensional {FFT}'s},
    1850   pages = {2176--2178},
    1851   journal = {IEEE Transactions on Signal Processing},
    1852   volume = {42},
    1853   annote = {key_fft},
    1854   author = {Bernardini, R. and Cortelazzo, G.M. and Mian, G.A.}
    1855 }
    1856 @article{Nellist1994,
    1857   year = {1994},
    1858   title = {Beyond the conventional information limit: the relevant coherence function},
    1859   pages = {61-74},
    1860   journal = {Ultramicroscopy},
    1861   volume = {54},
    1862   author = {Nellist, P.D. and Rodenburg, J.M.}
    1863 }
    1864 @article{Maragos1989,
    1865   number = {7},
    1866   year = {1989},
    1867   title = {Pattern Spectrum and Multiscale Shape Representation},
    1868   pages = {701--716},
    1869   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    1870   volume = {11},
    1871   author = {Maragos, P.}
    1872 }
    1873 @article{DeMoment1989,
    1874   number = {12},
    1875   month = {December},
    1876   year = {1989},
    1877   title = {Image Reconstruction and Restoration: Overview of Common Estimation Structures and Problems},
    1878   pages = {2024--2036},
    1879   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    1880   volume = {37},
    1881   author = {DeMoment, G.}
    1882 }
    1883 @article{Maragos1986,
    1884   number = {5},
    1885   year = {1986},
    1886   title = {Morphological Skeleton Representation and Coding of Binary Images},
    1887   pages = {1228-1244},
    1888   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    1889   volume = {34},
    1890   author = {Maragos, P. and Schafer, R. W.}
    1891 }
    1892 @article{GRADALT,
    1893   year = {1986},
    1894   title = {A Note on the Gradient of a Multi-Image},
    1895   pages = {166--125},
    1896   journal = {Computer Vision, Graphics, and Image Processing},
    1897   volume = {33},
    1898   author = {S. di Zeno}
    1899 }
    1900 @phdthesis{Ecker2004,
    1901   month = {September},
    1902   year = {2004},
    1903   title = {Conformations of single polymer chains on surfaces},
    1904   address = {Berlin},
    1905   school = {Humboldt-Universit{\"a}t zu Berlin},
    1906   author = {Ecker, C.}
    1907 }
    1908 @article{Haider2000,
    1909   year = {2000},
    1910   title = {Upper limits for the residual aberrations of a high-resolution aberration-corrected {STEM}},
    1911   pages = {163-175},
    1912   journal = {Ultramicroscopy},
    1913   volume = {81},
    1914   author = {Haider, M. and Uhlemann, S. and Zach, J.}
    1915 }
    1916 @article{Breen2000,
    1917   year = {2000},
    1918   title = {Mathematical Morphology: A Useful Set of Tools for Image Analysis},
    1919   pages = {105--120},
    1920   journal = {Statistics and Computing},
    1921   volume = {10},
    1922   author = {Breen, E.J. and Jones, R. and Talbot, H.}
    1923 }
    1924 @article{Mucke2004,
    1925   number = {5},
    1926   year = {2004},
    1927   title = {Assessing the Flexibility of Intermediate Filaments by Atomic Force Microscopy},
    1928   pages = {1241-1250},
    1929   journal = {Journal of Molecular Biology},
    1930   volume = {335},
    1931   author = {{M\"ucke}, N. and Kreplak, L. and Krimse, R. and Wedig, T. and Herrmann, H. and Aebi, U. and Langowski, J.}
    1932 }
    1933 @article{Kusumi1993,
    1934   year = {1993},
    1935   title = {Confined Lateral Diffusion of Membrane Receptors as Studied by Single Particle Tracking (Nanovid Microscopy)},
    1936   pages = {2021-2040},
    1937   journal = {Biophysical Journal},
    1938   volume = {65},
    1939   author = {Kusumi, A. and Sako, Y. and Yamamoto, M.}
    1940 }
    1941 @article{Tarabusi1999,
    1942   month = {February},
    1943   year = {1999},
    1944   title = {Characterization of the Range of the Radon Transform on Homogeneous Trees},
    1945   pages = {11--17},
    1946   journal = {Electronic Research Announcements of the American Mathematical Society},
    1947   volume = {5},
    1948   annote = {key_radon},
    1949   author = {Tarabusi, E.C. and Cohen, J.M. and Colonna, F.}
    1950 }
    1951 @article{Dugelay1995,
    1952   year = {1995},
    1953   title = {Differential methods for the identification of 2D and 3D motion models in image sequences },
    1954   pages = {105--127},
    1955   journal = {Signal Processing: Image Communication},
    1956   volume = {7},
    1957   author = {Dugelay, J.L. and Sanson, H.}
    1958 }
    1959 @article{Gryczynski1995,
    1960   number = {1},
    1961   year = {1995},
    1962   title = {Three-photon induced fluorescence of 2,5-diphenyloxazole with a femtosecond {Ti:sapphire} laser},
    1963   pages = {30-35},
    1964   journal = {Chemical Physics Letters},
    1965   volume = {245},
    1966   author = {Gryczynski, I. and Malak, H. and Lakowicz, J.R.}
    1967 }
    1968 @article{Fernandez2006a,
    1969   number = {3},
    1970   year = {2006},
    1971   title = {Strategies for structural determination of biological specimens},
    1972   pages = {84-94},
    1973   journal = {IEEE Signal Processing Magazine},
    1974   volume = {23},
    1975   author = {Fernandez, J.-J. and Sorzano, C.O.S. and Marabini, R. and Carazo, J.-M.}
    1976 }
    1977 @article{Immerkaer1996,
    1978   number = {2},
    1979   year = {1996},
    1980   title = {Fast Noise Variance Estimation},
    1981   pages = {300-302},
    1982   journal = {Computer Vision and Image Understanding},
    1983   volume = {64},
    1984   author = {{Immerk\aer}, J.}
    1985 }
    1986 @article{Bazin1965,
    1987   month = {August},
    1988   year = {1965},
    1989   title = {Off-line Global Approach to Pattern Recognition for Bubble Chamber Pictures},
    1990   pages = {291--295},
    1991   journal = {IEEE Transactions on Nuclear Science},
    1992   volume = {12},
    1993   author = {Bazin, M.J. and Benoit, J.W.}
    1994 }
    1995 @article{Lenz1987a,
    1996   year = {1987},
    1997   title = {Rotation-Invariant Operators and Scale-Space Filtering},
    1998   pages = {151--154},
    1999   journal = {Pattern Recognition Letters},
    2000   volume = {6},
    2001   author = {Lenz, R.}
    2002 }
    2003 @article{Miller1953,
    2004   year = {1953},
    2005   title = {A Production of Amino Acids Under Possible Primitive Earth Conditions},
    2006   pages = {528--529},
    2007   journal = {Science},
    2008   volume = {117},
    2009   author = {Miller, S.L.}
    2010 }
    2011 @article{Thapa1997,
    2012   number = {1},
    2013   month = {January/February},
    2014   year = {1997},
    2015   title = {Semi-automatic Analysis of Rock Fracture Orientations From Borehole Wall Images},
    2016   pages = {129--137},
    2017   journal = {Geophysics},
    2018   volume = {62},
    2019   author = {Thapa, B.B. and Hughett, P. and Karasaki, K.}
    2020 }
    2021 @phdthesis{Xu1996,
    2022   year = {1996},
    2023   title = {Motion and Optical Flow in Computer Vision},
    2024   address = {{Link\"oping}, Sweden},
    2025   school = {{Link\"oping} University},
    2026   author = {Xu, S.}
    2027 }
    2028 @misc{VedelJensen2000,
    2029   month = {May 20--25},
    2030   year = {2000},
    2031   title = {Stereology and Geometric Tomography},
    2032   howpublished = {Summer School, Sandbjerg Manor, Denmark},
    2033   author = {Vedel Jensen, E.B.}
    2034 }
    2035 @article{Pauwels1995,
    2036   number = {7},
    2037   month = {July},
    2038   year = {1995},
    2039   title = {An Extended Class of Scale-Invariant and Recursive Scale Space Filters},
    2040   pages = {691--701},
    2041   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    2042   volume = {17},
    2043   author = {Pauwels, E.J. and Gool, L.J. van and Fiddelaers, P. and Moons, T.}
    2044 }
    2045 @inproceedings{Goldfarb1986,
    2046   year = {1986},
    2047   title = {Metric Data Models and Associative Memories},
    2048   booktitle = {IASTED/AFCET International Symposium on Robotics and Artificial Intelligence, University Paul Sabatier, Toulouse},
    2049   pages = {53--73},
    2050   volume = {3},
    2051   author = {Goldfarb, L.}
    2052 }
    2053 @article{Goldfarb1984,
    2054   number = {5},
    2055   year = {1984},
    2056   title = {A Unified Approach to Pattern Recognition},
    2057   pages = {575--582},
    2058   journal = {Pattern Recognition},
    2059   volume = {17},
    2060   author = {Goldfarb, L.}
    2061 }
    2062 @article{Silcox1992,
    2063   year = {1992},
    2064   title = {Resolution limits in annular dark field {STEM}},
    2065   pages = {173-186},
    2066   journal = {Ultramicroscopy},
    2067   volume = {47},
    2068   author = {Silcox, J. and Xu, P. and Loane, R.F.}
    2069 }
    2070 @article{Blair1996,
    2071   number = {B9},
    2072   year = {1996},
    2073   title = {Using Two-Point Correlation Functions to Characterize Microgeometry and Estimate Permeabilities of Sandstones and Porous Glass},
    2074   pages = {20359--20375},
    2075   journal = {Journal of Geophysical Research},
    2076   volume = {101},
    2077   author = {Blair, S.C. and Berge, P.A. and Berryman, J.G.}
    2078 }
    2079 @article{Rieger2001a,
    2080   number = {7},
    2081   year = {2002},
    2082   title = {Curvature of n-dimensional Space Curves in Grey-Value Images},
    2083   pages = {738--745},
    2084   journal = {IEEE Transactions on Image Processing},
    2085   volume = {11},
    2086   author = {Rieger, B. and Vliet, L.J. van}
    2087 }
    2088 @article{Deegan1997,
    2089   year = {1997},
    2090   title = {Capillary flow as the cause of ring stains from dried liquid drops},
    2091   pages = {827--829},
    2092   journal = {Nature},
    2093   volume = {389},
    2094   author = {Deegan, R.D. and Bakajin, O. and Dupont, T.F. and Huber, G. and Nagel, S.R. and Witten, T.A.}
    2095 }
    2096 @article{Biemond1990,
    2097   number = {5},
    2098   month = {May},
    2099   year = {1990},
    2100   title = {Iterative Methods for Image Deblurring},
    2101   pages = {856--883},
    2102   journal = {Proceedings of the IEEE},
    2103   volume = {78},
    2104   author = {Biemond, J. and Lagendijk, R.L. and Mersereau, R.M.}
    2105 }
    2106 @article{Jones2005,
    2107   number = {4},
    2108   year = {2005},
    2109   title = {Measuring Forces between Protein Fibers by Microscopy},
    2110   pages = {2433-2441},
    2111   journal = {Biophysical Journal},
    2112   volume = {88},
    2113   author = {Jones, C.W. and Wang, J.C. and Briehl, R.W. and Turner, M.S.}
    2114 }
    2115 @article{Jares-Erijman2003,
    2116   number = {7},
    2117   year = {2003},
    2118   title = {{FRET} imaging},
    2119   pages = {1138-1395},
    2120   journal = {Nature Biotechnology},
    2121   volume = {21},
    2122   author = {Jares-Erijman, E.A. and Jovin, T.M.}
    2123 }
    2124 @article{Jares-Erijman2006,
    2125   year = {2006},
    2126   title = {Imaging molecular interactions in living cells by {FRET} microscopy},
    2127   journal = {Current Opinion in Chemical Biology},
    2128   author = {Jares-Erijman, E.A. and Jovin, T.M.}
    2129 }
    2130 @inproceedings{Sorensen1988,
    2131   month = {April},
    2132   year = {1988},
    2133   title = {Efficient Computation of the Short-Time {FFT}},
    2134   booktitle = {Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, (New York, U.S.A.)},
    2135   pages = {1894--1897},
    2136   annote = {key_fft},
    2137   author = {Sorensen, H.V. and Burrus, C.S.}
    2138 }
    2139 @article{Bonnet2000,
    2140   year = {2000},
    2141   title = {Artificial Intelligence and Pattern Recognition Techniques in Microscope Image Processing and Analysis},
    2142   journal = {Advances in Imaging and Electron Physics},
    2143   volume = {114},
    2144   author = {Bonnet, {No\"el}}
    2145 }
    2146 @article{Sukanya2000,
    2147   number = {3},
    2148   month = {July},
    2149   year = {2000},
    2150   title = {Multiscale Image Analysis through the Surface-shape Operator},
    2151   pages = {305--316},
    2152   journal = {Journal of Electronic Imaging},
    2153   volume = {9},
    2154   author = {Sukanya, P. and Takamatsu, R. and Sato, M.}
    2155 }
    2156 @article{Sorensen1987,
    2157   number = {6},
    2158   month = {June},
    2159   year = {1987},
    2160   title = {Real-Valued Fast {Fourier} Transform Algorithms},
    2161   pages = {849--863},
    2162   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    2163   volume = {35},
    2164   annote = {key_fft},
    2165   author = {Sorensen, H.V. and Jones, D.L. and Heideman, M.T. and Burrus, C.S.}
    2166 }
    2167 @article{Moon1996,
    2168   number = {6},
    2169   month = {November},
    2170   year = {1996},
    2171   title = {The Expectation-Maximization Algorithm},
    2172   pages = {47--60},
    2173   journal = {IEEE Signal Processing Magazine},
    2174   volume = {13},
    2175   author = {Moon, T.K.}
    2176 }
    2177 @article{Noble1988,
    2178   number = {2},
    2179   month = {May},
    2180   year = {1988},
    2181   title = {Finding Corners},
    2182   pages = {121--128},
    2183   journal = {Image and Vision Computing},
    2184   volume = {6},
    2185   author = {Noble, A.}
    2186 }
    2187 @book{Barham2001,
    2188   year = {2001},
    2189   title = {The Science of Cooking},
    2190   address = {Berlin, Heidelberg, New York},
    2191   publisher = {Springer},
    2192   author = {Barham, P.}
    2193 }
    2194 @article{Bleau1992,
    2195   number = {2},
    2196   month = {September},
    2197   year = {1992},
    2198   title = {A New Set of Fast Algorithms for Mathematical Morphology, I. Idempotent Geodesic Transforms},
    2199   pages = {178--209},
    2200   journal = {CVGIP: Image Understanding},
    2201   volume = {56},
    2202   author = {Bleau, A. and Guise, J. de and LeBlanc, A.-R.}
    2203 }
    2204 @article{Iverson1995,
    2205   number = {10},
    2206   month = {October},
    2207   year = {1995},
    2208   title = {Logical/Linear Operators for Image Curves},
    2209   pages = {982--996},
    2210   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    2211   volume = {17},
    2212   author = {Iverson, L.A. and Zucker, S.W.}
    2213 }
    2214 @inproceedings{Tretiak1984,
    2215   year = {1984},
    2216   title = {Velocity estimation for mimage sequences with second order differential operators},
    2217   booktitle = {Int. Conf. on Pattern Recognition (Montreal, Canada)},
    2218   pages = {20--22},
    2219   publisher = {IEEE Computer Society Press, Los Alamitos, USA},
    2220   author = {Tretiak, O. and Pastor, L.}
    2221 }
    2222 @book{Dudgeon1984,
    2223   year = {1984},
    2224   title = {Multidimensional Digital Signal Processing},
    2225   publisher = {Prentice-Hall},
    2226   author = {Dudgeon, D.E. and Merserau, R.M.}
    2227 }
    2228 @phdthesis{Iverson1994,
    2229   year = {1994},
    2230   title = {Toward Discrete Geometric Models for Early Vision},
    2231   address = {{Montr\'eal}, Canada},
    2232   school = {McGill University},
    2233   author = {Iverson, L.A.}
    2234 }
    2235 @article{Potter2004,
    2236   year = {2004},
    2237   title = {Robotic grid loading system for a transmission electron microscope},
    2238   pages = {431-440},
    2239   journal = {Journal of Structural Biology},
    2240   volume = {146},
    2241   author = {Potter, C.S. and Pulokas, J. and Smith, P. and Suloway, C. and Carragher, B.}
    2242 }
    2243 @book{Kohonen1995,
    2244   series = {Springer Series in Information Sciences},
    2245   year = {1995},
    2246   title = {Self-Organizing Maps},
    2247   volume = {30},
    2248   publisher = {Springer-Verlag},
    2249   author = {Kohonen, T.}
    2250 }
    2251 @article{Qian1999,
    2252   year = {1999},
    2253   title = {Quantitative Study of Polymer Conformation and Dynamics by Single-Particle Tracking},
    2254   pages = {1598-1805},
    2255   journal = {Biophysical Journal},
    2256   volume = {78},
    2257   author = {Qian, H. and Elson, E.L.}
    2258 }
    2259 @article{Bennett1999,
    2260   number = {7},
    2261   month = {July},
    2262   year = {1999},
    2263   title = {A Method to Detect and Characterize Ellipses using the Hough Transform},
    2264   pages = {652--657},
    2265   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    2266   volume = {21},
    2267   annote = {key_radon},
    2268   author = {Bennett, N. and Burridge, R. and Saito, N.}
    2269 }
    2270 @inproceedings{Faas2003,
    2271   series = {LNCS 2749},
    2272   month = {June 29 -July 2},
    2273   year = {2003},
    2274   title = {3D-Orientation space; filters and sampling},
    2275   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden)},
    2276   pages = {36-42},
    2277   address = {Berlin},
    2278   publisher = {Springer-Verlag},
    2279   author = {Faas, F.G.A. and Vliet, L.J. van}
    2280 }
    2281 @article{Qian1991,
    2282   year = {1991},
    2283   title = {Single Particle Tracking; Analysis of diffusion flow in two-dimensional systems},
    2284   pages = {910-921},
    2285   journal = {Biophysical Journal},
    2286   volume = {60},
    2287   author = {Qian, H. and Sheetz, M.P. and Elson, E.L.}
    2288 }
    2289 @article{Mallat1992a,
    2290   number = {2},
    2291   month = {March},
    2292   year = {1992},
    2293   title = {Singularity Detection and Processing with Wavelets},
    2294   pages = {617--643},
    2295   journal = {IEEE Transactions on Information Theory},
    2296   volume = {38},
    2297   author = {Mallat, S.G. and Hwang, W.L.}
    2298 }
    2299 @article{Qian1994,
    2300   number = {10},
    2301   month = {October},
    2302   year = {1994},
    2303   title = {Self-Sorting In-Place {FFT} Algorithm with Minimum Working Space},
    2304   pages = {2835--2836},
    2305   journal = {IEEE Transactions on Signal Processing},
    2306   volume = {42},
    2307   annote = {key_fft},
    2308   author = {Qian, Z. and Lu, C. and An, M. and Tolimieri, R.}
    2309 }
    2310 @inproceedings{Williams1998,
    2311   series = {Proceedings of SPIE},
    2312   year = {1998},
    2313   title = {Back-Illuminated {CCD} Imagers for High Information Content Digital Photography},
    2314   author = {Williams, G.M. Jr and Marsh, H.H. and Hinds, M.}
    2315 }
    2316 @article{Ragnemalm1992,
    2317   number = {3},
    2318   month = {November},
    2319   year = {1992},
    2320   title = {Neighborhoods for Distance Transformation Using Ordered Propagation},
    2321   pages = {399--409},
    2322   journal = {CVGIP: Image Understanding},
    2323   volume = {56},
    2324   author = {Ragnemalm, I.R.}
    2325 }
    2326 @techreport{Andersson1999,
    2327   year = {1999},
    2328   title = {Filter Networks},
    2329   institution = {{Link\"oping} University},
    2330   author = {Andersson, M. and Wiklund, J. and Knutsson, H.}
    2331 }
    2332 @techreport{Andersson1998,
    2333   year = {1998},
    2334   title = {Sequential Filter Trees for Efficient 2{D}, 3{D} and 4{D} Orientation Estimation},
    2335   institution = {{Link\"oping} University},
    2336   author = {Andersson, M. and Wiklund, J. and Knutsson, H.}
    2337 }
    2338 @article{Duits2004,
    2339   number = {3},
    2340   year = {2004},
    2341   title = {On the Axioms of Scale Space Theory},
    2342   pages = {267-298},
    2343   journal = {Journal of Mathematical Imaging and Vision},
    2344   volume = {20},
    2345   author = {Duits, R. and Florak, L.M.J. and Graaf, J. de and Haar Romey, B.M. ter}
    2346 }
    2347 @article{Louverdis2002,
    2348   year = {2002},
    2349   title = {A New Approach to Morphological Color Image Processing},
    2350   pages = {1733-1741},
    2351   journal = {Pattern Recognition},
    2352   volume = {35},
    2353   author = {Louverdis, G. and Vardavoulia, M.I. and Andreadis, I. and Tsalides, Ph.}
    2354 }
    2355 @article{Grunewald2003a,
    2356   year = {2003},
    2357   title = {Three-Dimensional Structure of Herpes Simplex Virus from Cryo-Electron Tomography},
    2358   pages = {1396-1398},
    2359   journal = {Science},
    2360   volume = {302},
    2361   author = {{Gr\"unewald}, K. and Desai, P. and Winkler, D.C. and Heymann, J.B. and Belnap, D. and Baumeister, W. and Steven, A.C.}
    2362 }
    2363 @article{Jamitzky2001,
    2364   number = {1-2},
    2365   year = {2001},
    2366   title = {Scaling-index method as an image processing tool in scanning-probe microscopy},
    2367   pages = {241-246},
    2368   journal = {Ultramicroscopy},
    2369   volume = {86},
    2370   author = {Jamitzky, F. and Stark, R.W. and Bunk, W. and Thalhammer, S. and {R\"ath}, C. and Aschenbrenner, T. and Morfill, G.E. and Heckl, W.M.}
    2371 }
    2372 @phdthesis{Andersson1992,
    2373   year = {1992},
    2374   title = {Controllable Multidimensional Filters and Models in Low Level Computer Vision},
    2375   address = {{Link\"oping, Sweden}},
    2376   school = {{Link\"oping University}},
    2377   author = {Andersson, M.T.}
    2378 }
    2379 @inproceedings{Ye1997,
    2380   month = {June 15-19},
    2381   year = {1997},
    2382   title = {Automatic High Resolution Sedimentary Dip Detection on Borehole Imagery},
    2383   booktitle = {SPWLA 38th Annual Logging Symposium},
    2384   author = {Ye, S. and Rabiller, P. and Keskes, N.}
    2385 }
    2386 @article{Shannon1949,
    2387   number = {1},
    2388   year = {1949},
    2389   title = {Communication in the Presence of Noise},
    2390   pages = {10--21},
    2391   note = {[reprinted in: Proceedings of the IEEE, vol. 86, no. 2, pp. 447-457, February 1998]},
    2392   journal = {Proceedings of the IRE},
    2393   volume = {37},
    2394   author = {Shannon, C.E.}
    2395 }
    2396 @article{Peters2003,
    2397   year = {2001},
    2398   title = {Trafficking of prion proteins through a novel caveolae-mediated endosomal pathway},
    2399   pages = {703-717},
    2400   journal = {Journal of Cell Biology},
    2401   volume = {162},
    2402   author = {Peters, P.J. and Vey, M. and Donselaar, E. van and Mironov, A. Jr. and Erpel, S. and Peretx, D. and Lexlerc, E. and DeArmond, S.J. and Burton, D.R. and Williamson, R.A. and Prusiner, S.B.}
    2403 }
    2404 @article{Shannon1948,
    2405   month = {July, October},
    2406   year = {1948},
    2407   title = {A Mathematical Theory of Communication},
    2408   pages = {379--423, 623--656},
    2409   journal = {The Bell System Technical Journal},
    2410   volume = {27},
    2411   author = {Shannon, C.E.}
    2412 }
    2413 @article{Robinson2004,
    2414   number = {15},
    2415   year = {2004},
    2416   title = {Efficient morphological reconstruction: a downhill filter},
    2417   pages = {1759-1767},
    2418   journal = {Pattern Recognition Letters},
    2419   volume = {25},
    2420   author = {Robinson, K. and Whelan, P.F.}
    2421 }
    2422 @article{Cherny1999,
    2423   number = {4},
    2424   year = {1999},
    2425   title = {{DNA} Bending Due to Specific p53 and p53 Core Domain-{DNA} Interactions Visualized by Electron Microscopy},
    2426   pages = {1015-1026},
    2427   journal = {Journal of Molecular Biology},
    2428   volume = {294},
    2429   author = {Cherny, D.I. and Striker, G. and Subramaniam, V. and Jett, S.D. and Pale\v{c}ek, E. and Jovin, T.M.}
    2430 }
    2431 @inproceedings{Rieger2001,
    2432   month = {May 30 -June 1},
    2433   year = {2001},
    2434   title = {Estimation of Curvature of n-dimensional Space Curves in Grey-value Images},
    2435   booktitle = {Proc. ASCI 2001, 7th Annual Conf. of the Advanced School for Computing and Imaging},
    2436   pages = {436--442},
    2437   editor = {Lagendijk, R. and Pimentel, A. and Wilkinson, M.},
    2438   address = {Delft},
    2439   author = {Rieger, B. and Vliet, L.J. van},
    2440   organization = {ASCI}
    2441 }
    2442 @inproceedings{Rieger2003,
    2443   series = {LNCS 2749},
    2444   month = {June 29 -July 2},
    2445   year = {2003},
    2446   title = {Estimation of curvature based shape properties of surfaces in 3D grey-value images},
    2447   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    2448   pages = {262-267},
    2449   editor = {{Big\"un}, J. and Gustavsson, T.},
    2450   address = {Berlin},
    2451   publisher = {Springer-Verlag},
    2452   author = {Rieger, B. and Vliet, L.J. van and Verbeek, P.W.}
    2453 }
    2454 @article{Borgefors1986,
    2455   year = {1986},
    2456   title = {Distance transformations in digital images},
    2457   pages = {344--371},
    2458   journal = {Computer Vision, Graphics and Image Processing },
    2459   volume = {34},
    2460   author = {Borgefors, G.}
    2461 }
    2462 @article{Wiener1949,
    2463   year = {1949},
    2464   title = {Extrapolation, Interpolation and Smoothing of stationary Time Series},
    2465   journal = {Cambridge, MA : M.I.T. Press},
    2466   author = {Wiener, N.}
    2467 }
    2468 @article{Borgefors1984,
    2469   year = {1984},
    2470   title = {Distance transformations in arbitrary dimensions},
    2471   pages = {321-345},
    2472   journal = {Computer Vision, Graphics and Image Processing },
    2473   volume = {27},
    2474   author = {Borgefors, G.}
    2475 }
    2476 @article{Dougherty2001,
    2477   year = {2001},
    2478   title = {Optimal Conjunctive Granulometric Bandpass Filters},
    2479   pages = {39--51},
    2480   journal = {Journal of Mathematical Imaging and Vision},
    2481   volume = {14},
    2482   author = {Dougherty, Edward R.}
    2483 }
    2484 @article{Pei2001,
    2485   number = {11},
    2486   year = {2001},
    2487   title = {Efficient Implementation of Quaternion Fourier Transform, Convolution, and Correlation by 2D Complex FFT},
    2488   pages = {2783--2797},
    2489   journal = {IEEE Transactions on Signal Processing},
    2490   volume = {49},
    2491   annote = {key_fft},
    2492   author = {Pei, S.-C. and Ding, J.-J. and Chang, J.-H.}
    2493 }
    2494 @book{Scheck1999,
    2495   year = {1999},
    2496   title = {Mechanics: From {N}ewton's Law to Deterministic Chaos},
    2497   address = {Berlin},
    2498   publisher = {Springer},
    2499   author = {F. Scheck}
    2500 }
    2501 @article{Gordon2004,
    2502   number = {17},
    2503   year = {2004},
    2504   title = {Single-molecule high-resolution imaging with photobleaching},
    2505   pages = {6462-6465},
    2506   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    2507   volume = {101},
    2508   author = {Gordon, M.P. and Ha, T. and Selvin, P.R.}
    2509 }
    2510 @inproceedings{Koenderink2002,
    2511   series = {Lecture Notes in Computer Science},
    2512   year = {2002},
    2513   title = {Image Processing Done Right},
    2514   booktitle = {Proceedings of the ECCV 2002},
    2515   pages = {158--172},
    2516   editor = {Heyden, A.},
    2517   volume = {2350},
    2518   publisher = {Springer-Verlag},
    2519   author = {Koenderink, J.J. and Doorn, A.J. van}
    2520 }
    2521 @article{Huang1979,
    2522   number = {1},
    2523   month = {February},
    2524   year = {1979},
    2525   title = {A Fast Two-Dimensional Median Filtering Algorithm},
    2526   pages = {13--18},
    2527   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    2528   volume = {27},
    2529   author = {Huang, T.S. and Yang, G.J. and Tang, G.Y.}
    2530 }
    2531 @misc{LevitzXXXX,
    2532   title = {Evaluation of 3D Structural Properties of Porous Materials from 2D Sections: Morphology and Chord Length Distribution Functions},
    2533   howpublished = {www},
    2534   author = {Levitz, P.}
    2535 }
    2536 @inproceedings{Vliet1988a,
    2537   year = {1988},
    2538   title = {An edge detection model based on nonlinear Laplace filtering},
    2539   booktitle = {Pattern Recognition and Artificial Intelligence},
    2540   pages = {63--73},
    2541   editor = {Gelsema, E.S. and Kanal L.N.},
    2542   address = {North-Holland},
    2543   publisher = {Elsevier Science Publishers B.V.},
    2544   author = {Vliet, L.J. van and Young, I.T. and Beckers, A.L.D.}
    2545 }
    2546 @article{Hansen2001,
    2547   year = {2001},
    2548   title = {Nonparametric Estimation of the Chord Length Distribution},
    2549   journal = {Advances in Applied Probability},
    2550   volume = {33},
    2551   author = {Hansen, M.B. and Zwet, E.W. van}
    2552 }
    2553 @article{Baddeley1997,
    2554   year = {1997},
    2555   title = {Kaplan-Meier Estimators for Interpoint Distance Distributions for Spatial Point Processes},
    2556   pages = {263--292},
    2557   journal = {Annals of Statistics 25},
    2558   volume = {25},
    2559   author = {Baddeley, A.J. and Gill, R.D.}
    2560 }
    2561 @inproceedings{Vliet1995a,
    2562   month = {June},
    2563   year = {1995},
    2564   title = {Estimators for Orientation and Anisotropy in Digitized Images},
    2565   booktitle = {ASCI'95, Proceedings of the First Annual Conference of the Advanced School for Computing and Imaging},
    2566   pages = {442--450},
    2567   editor = {van Katwijk, J. and Gerbrands, J.J. and van Steen, M.R. and Tonino, J.F.M.},
    2568   address = {Heijen, The Netherlands},
    2569   author = {Vliet, L.J. van and Verbeek, P.W.}
    2570 }
    2571 @article{Maintz1998,
    2572   number = {1},
    2573   year = {1998},
    2574   title = {A survey of medical image registration},
    2575   pages = {1-37},
    2576   journal = {Medical Image Analysis},
    2577   volume = {1},
    2578   author = {Maintz, J.B.A. and Viergever, M.A.}
    2579 }
    2580 @book{Barrett1981,
    2581   year = {1981},
    2582   title = {Radiological Imaging; The Theory of Image Formation, Detection, and Processing},
    2583   annote = {key_radon},
    2584   publisher = {Academic Press},
    2585   author = {Barrett, H.H. and Swindell, W.}
    2586 }
    2587 @book{Honerkamp1998,
    2588   year = {1998},
    2589   title = {Statistical Physics: An Advanced Approach with Applications},
    2590   publisher = {Springer-Verlag},
    2591   author = {Honerkamp, J.}
    2592 }
    2593 @article{Maintz1996,
    2594   number = {4},
    2595   year = {1996},
    2596   title = {Evaluation of ridge seeking operators for multimodality medical image matching},
    2597   pages = {353--365},
    2598   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    2599   volume = {18},
    2600   author = {Maintz, J.B.A. and Elsen, P.A. van den and Viergever, M.A.}
    2601 }
    2602 @book{Hyvarinen2001,
    2603   year = {2001},
    2604   title = {Independant Component Analysis},
    2605   address = {New York},
    2606   publisher = {Wiley Interscience},
    2607   author = {{Hyv\"arinen}, A. and Karhumen, J. and Oja, E.}
    2608 }
    2609 @techreport{Almansa1998,
    2610   year = {1998},
    2611   title = {Fingerprint Enhancement by Shape Adaptation of Scale-Space Operators with Automatic Scale Selection},
    2612   annote = {Partial document},
    2613   institution = {University of the Republic of Uruguay},
    2614   author = {Almansa, A. and Lindeberg, T.}
    2615 }
    2616 @article{Hofmann1984,
    2617   number = {3},
    2618   year = {1984},
    2619   title = {Localization of flexible sites in thread-like molecules from electron micrographs. Comparison of interstitial, basement membrane and intima collagens},
    2620   pages = {325-343},
    2621   journal = {Journal of Molecular Biology},
    2622   volume = {172},
    2623   author = {Hofmann, H. and Voss, T. and {K\"uhn}, K. and Engel, J.}
    2624 }
    2625 @inproceedings{Aguado1996,
    2626   month = {16--19 September},
    2627   year = {1996},
    2628   title = {Improving Parameter Space Decomposition for the Generalised {Hough} Transform},
    2629   booktitle = {International Conference on Image Processing},
    2630   pages = {627--630},
    2631   volume = {3},
    2632   author = {Aguado, A.S. and Montiel, M.E. and Nixon, M.S.}
    2633 }
    2634 @article{Roberts2001,
    2635   number = {2},
    2636   month = {February},
    2637   year = {2001},
    2638   title = {Curvature attributes and their application to 3D interpreted horizons},
    2639   pages = {85-100},
    2640   journal = {First Break},
    2641   volume = {19},
    2642   author = {Roberts, A.}
    2643 }
    2644 @inproceedings{Vliet1993akort,
    2645   year = {1993},
    2646   title = {Curvature and Bending Energy in Digitized 2D and 3D Images },
    2647   booktitle = {SCIA'93},
    2648   pages = {1403--1410 },
    2649   address = {{Troms\o }, Norway},
    2650   author = {Vliet, L.J. van and Verbeek, P.W. }
    2651 }
    2652 @article{Koenderink1992b,
    2653   number = {4},
    2654   year = {1992},
    2655   title = {Second-order optic flow},
    2656   pages = {530-538},
    2657   journal = {Journal of the Optical Society of America A},
    2658   volume = {9},
    2659   author = {Koenderink, J.J. and Doorn, A.J. van}
    2660 }
    2661 @book{Lakowicz1999,
    2662   edition = {2nd},
    2663   year = {1999},
    2664   title = {Principles of Fluorescence Spectroscopy},
    2665   address = {New York},
    2666   publisher = {Kluwer Academic Press},
    2667   author = {Lakowicz, J.R.}
    2668 }
    2669 @article{Cardoso1998,
    2670   number = {10},
    2671   year = {1998},
    2672   title = {Blind signal separation: statistical principles},
    2673   pages = {2009-2025},
    2674   journal = {Proceedings of the IEEE},
    2675   volume = {86},
    2676   author = {Cardoso, J.-F.}
    2677 }
    2678 @article{Koenderink1992a,
    2679   number = {8},
    2680   year = {1992},
    2681   title = {Surface shape and curvature scales},
    2682   pages = {557--565},
    2683   journal = {Image and Vision Computing},
    2684   volume = {10},
    2685   author = {Koenderink, J.J. and Doorn, A.J. van}
    2686 }
    2687 @article{Kornprobst1999,
    2688   year = {1999},
    2689   title = {Image Sequence Analysis via Partial Differential Equations},
    2690   pages = {5--26},
    2691   journal = {Journal of Mathematical Imaging and Vision},
    2692   volume = {11},
    2693   author = {Kornprobst, P. and Sand, S. and Deriche, R. and Aubert, G.}
    2694 }
    2695 @article{Shevelev1998,
    2696   year = {1998},
    2697   title = {Second-order features extraction in the cat visual cortex: selective and invariant sensitivity of neurons to the shape and orientation of crosses and corners},
    2698   pages = {195-204},
    2699   journal = {BioSystems},
    2700   volume = {48},
    2701   author = {Shevelev, I.A.}
    2702 }
    2703 @article{Bacia2003,
    2704   number = {1},
    2705   year = {2003},
    2706   title = {A dynamic view of cellular processes by in vivo fluorescence auto- and cross-correlation spectroscopy},
    2707   pages = {74-85},
    2708   journal = {Methods},
    2709   volume = {29},
    2710   author = {Bacia, K. and Schwille, P.}
    2711 }
    2712 @article{Yuille1986,
    2713   number = {1},
    2714   month = {January},
    2715   year = {1986},
    2716   title = {Scaling theorems for zero crossings},
    2717   pages = {15--25},
    2718   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    2719   volume = {8},
    2720   author = {Yuille, A.L. and Poggio, T.}
    2721 }
    2722 @article{Volkmer2000,
    2723   number = {3},
    2724   year = {2000},
    2725   title = {One- and two-photon excited fluorescence lifetimes and anisotropy decays of green fluorescent proteins},
    2726   pages = {1589-1598},
    2727   journal = {Biophysical Journal},
    2728   volume = {78},
    2729   author = {Volkmer, A. and Subramaniam, V. and Birch, D.J. and Jovin, T.M.}
    2730 }
    2731 @article{Bigelow2003,
    2732   number = {9},
    2733   month = {May},
    2734   year = {2003},
    2735   title = {Confocal fluorescence spectroscopy and anisotropy imaging system},
    2736   pages = {695-697},
    2737   journal = {Optics Letters},
    2738   volume = {28},
    2739   author = {Bigelow, C.E. and Conover, D.L. and Foster, T.H.}
    2740 }
    2741 @inproceedings{Coeurjolly2001,
    2742   series = {Lecture Notes on Computer Science},
    2743   month = {May},
    2744   year = {2001},
    2745   title = {Discrete Curvature Based on Osculating Circle Estimation},
    2746   booktitle = {Visual Form 2001},
    2747   pages = {303--312},
    2748   editor = {Arcelli, C. and Cordella, L.P. and Sanniti di Baja, G. },
    2749   volume = {2059},
    2750   address = {Capri, Italy},
    2751   publisher = {Springer-Verlag},
    2752   author = {Coeurjolly, D. and Miguet, S. and Tougne, L.}
    2753 }
    2754 @book{Kak1988,
    2755   year = {1988},
    2756   title = {Principles of Computerized Tomographic Imaging},
    2757   publisher = {IEEE Press},
    2758   author = {Kak, A. C. and Slaney, M.}
    2759 }
    2760 @inproceedings{Cao1999,
    2761   series = {Lecture Notes on Computer Science},
    2762   month = {September},
    2763   year = {1999},
    2764   title = {Morphological Scale Space and Mathematical Morphology},
    2765   booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)},
    2766   pages = {164--174},
    2767   editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
    2768   volume = {1682},
    2769   address = {Berlin Heidelberg},
    2770   publisher = {Springer-Verlag},
    2771   author = {Cao, {Fr\'ed\'eric}}
    2772 }
    2773 @book{Leibovic1990,
    2774   year = {1990},
    2775   title = {Science of Vision},
    2776   publisher = {Springer-Verlag},
    2777   author = {Leibovic (ed), K.N.}
    2778 }
    2779 @inbook{Hediger2004,
    2780   series = {Methods in Enzymology},
    2781   year = {2004},
    2782   title = {Methods for Visualizing Chromatin Dynamics in Living Yeast},
    2783   volume = {375},
    2784   chapter = {22},
    2785   publisher = {Elsevier Academic Press},
    2786   author = {Hediger, F. and Taddei, A. and Neumann, F.R. and Gasser, S.M.}
    2787 }
    2788 @article{Axelrod2001,
    2789   year = {2001},
    2790   title = {Total Internal Reflection Fluorescence Microscopy in Cell Biology},
    2791   pages = {764-774},
    2792   journal = {Traffic},
    2793   volume = {2},
    2794   author = {Axelrod, D.}
    2795 }
    2796 @article{Kuwahara1980,
    2797   year = {1980},
    2798   title = {Image enhancement and left ventricular contour extraction techniques applied to radioisotope angiocardiograms},
    2799   pages = {107-119},
    2800   journal = {Audiomedica},
    2801   volume = {3},
    2802   author = {Kuwahara, M. and Hachimura, K. and Kinoshita, M.}
    2803 }
    2804 @inproceedings{Whitworth1999,
    2805   year = {1999},
    2806   title = {The imaging and measurement of bubbles in bread doughs},
    2807   booktitle = {Bubbles In Food},
    2808   pages = {221-231},
    2809   editor = {Campbell, G.M. and Webb, C. and Pandiella, S.S.},
    2810   address = {St. Paul, USA},
    2811   publisher = {Eagan Press},
    2812   author = {Whitworth, M.B. and Alava, J.M.}
    2813 }
    2814 @article{Daugman1988,
    2815   number = {7},
    2816   year = {1988},
    2817   title = {Pattern and motion vision without Laplacian zero-crossings},
    2818   pages = {1142--1148},
    2819   journal = {Journal of the Optical Society of America A},
    2820   volume = {5},
    2821   author = {Daugman, J.G.}
    2822 }
    2823 @book{Rutishauer1990,
    2824   year = {1990},
    2825   title = {Lectures on numerical mathematics},
    2826   publisher = {{Birkh\"auser}},
    2827   author = {Rutishauer, H.}
    2828 }
    2829 @article{Nagel1983,
    2830   year = {1983},
    2831   title = {Displacement vectors derived from second-order intensity variations in image sequences},
    2832   pages = {85-117},
    2833   journal = {Computer Graphics and Image Processing},
    2834   volume = {21},
    2835   author = {Nagel, H.H.}
    2836 }
    2837 @misc{BaddeleyXXXX,
    2838   title = {Spatial Sampling and Censoring},
    2839   howpublished = {Some chapter. From www},
    2840   author = {Baddeley, A.}
    2841 }
    2842 @article{Nagel1986,
    2843   year = {1986},
    2844   title = {An investigation of smoothness constraints for the estimation of displacement vector fields form image sequences},
    2845   pages = {168-176},
    2846   journal = {IEEE Transactions of Pattern Recognition and Machine Intelligence},
    2847   volume = {8},
    2848   author = {Nagel, H.H. and Enkelmann, W.}
    2849 }
    2850 @article{Daugman1985,
    2851   number = {7},
    2852   month = {July},
    2853   year = {1985},
    2854   title = {Uncertainty Relation for Resolution in Space, Spatial Frequency, and Orientation Optimized by Two-dimensional Visual Cortical Filters},
    2855   pages = {1160--1169},
    2856   journal = {Journal of the Optical Society of America A},
    2857   volume = {2},
    2858   author = {Daugman, J.G.}
    2859 }
    2860 @article{Sorzano2004,
    2861   year = {2004},
    2862   title = {{XMIPP:} a new generation of an open-source image processing package for electron microscopy},
    2863   pages = {194-204},
    2864   journal = {Journal of Structural Biology},
    2865   volume = {148},
    2866   author = {Sorzano, C.O.S. and Marabini, R. and Vel\'azquez-Muriel, J. and Bilbao-Castro, J.R. and Scherees, S.H.W. and Carazo, J.M. and Pascual-Montano, A.}
    2867 }
    2868 @article{Sorzano2001,
    2869   year = {2001},
    2870   title = {The Effect of Overabundant Projection Directions on {3D} Reconstruction Algorithms},
    2871   pages = {108-118},
    2872   journal = {Journal of Structural Biology},
    2873   volume = {133},
    2874   author = {Sorzano, C.O.S. and Marabini, R. and Boisset, N. and Rietzel, E. and {Schr\"oder}, R. and Herman, G.T. and Carazo, J.M.}
    2875 }
    2876 @inproceedings{Kerbyson1995,
    2877   month = {4--6 July},
    2878   year = {1995},
    2879   title = {Circle Detection using {Hough} Transform Filters},
    2880   booktitle = {Image Processing and Its Applications},
    2881   pages = {370--374},
    2882   author = {Kerbyson, D.J. and Atherton, T.J.}
    2883 }
    2884 @article{Meyer2004,
    2885   year = {2004},
    2886   title = {A new method for the determination of the wave aberration function for high-resolution {TEM}. {2. Measurement} of the antisymmetric aberrations},
    2887   pages = {115-123},
    2888   journal = {Ultramicroscopy},
    2889   volume = {99},
    2890   author = {Meyer, R.R. and Kirkland, A.I. and Saxton, W.O.}
    2891 }
    2892 @article{Lin1999,
    2893   year = {1999},
    2894   title = {The Refined Crystal Structure of Cowpea Mosaic Virus at 2.8 Resolution},
    2895   pages = {20-34},
    2896   journal = {Virology},
    2897   volume = {265},
    2898   author = {Lin, T. and Chen, Z. and Usha, R. and Stauffacher, C.V. and Dai, J.-B. and Schmidt, T. and Johnson, J.E.}
    2899 }
    2900 @book{Mitra2000,
    2901   year = {2000},
    2902   title = {Nonlinear Image Processing},
    2903   publisher = {Academic Press},
    2904   author = {Mitra (Ed), S. and Sicuranza (Ed), G.}
    2905 }
    2906 @book{HandbookCP1980,
    2907   edition = {60th},
    2908   year = {1980},
    2909   title = {Handbook of Chemistry and Physics},
    2910   editor = {Lide, D.R.},
    2911   publisher = {CRC Press}
    2912 }
    2913 @article{Olsen1994,
    2914   number = {8},
    2915   month = {August},
    2916   year = {1994},
    2917   title = {Wavelet Localization of the {R}adon Transform},
    2918   pages = {2055--2067},
    2919   journal = {IEEE Transactions on Signal Processing},
    2920   volume = {42},
    2921   author = {Olsen, T. and DeStefano, J.}
    2922 }
    2923 @inproceedings{Wijk2004,
    2924   year = {2004},
    2925   title = {On Normalized Convolution to Measure Curvature Features for Automatic Polyp Detection},
    2926   booktitle = {LNCS 3216, MICCAI'04},
    2927   pages = {200-208},
    2928   editor = {Barillot, C. and Haynor, D.R. and Hellier, P.},
    2929   author = {Wijk, C. van and Truyen, R. and Gelder, R.E. van and Vliet, L.J. van and Vos, F.M.}
    2930 }
    2931 @article{Aitken1995,
    2932   number = {4},
    2933   year = {1995},
    2934   title = {A Comparison of Rotational Representation in Structure and Motion Estimation for Maneuvering Objects},
    2935   pages = {516--520},
    2936   journal = {IEEE Transactions on Image Processing},
    2937   volume = {4},
    2938   author = {Aitken, V.C. and Schwartz, H.M.}
    2939 }
    2940 @article{Barber1996,
    2941   number = {4},
    2942   month = {December},
    2943   year = {1996},
    2944   title = {The Quickhull Algorithm for Convex Hulls},
    2945   pages = {469--483},
    2946   journal = {ACM Transactions on Mathematical Software},
    2947   volume = {22},
    2948   author = {Barber, C.B. and Dobkin, D.P. and Huhdanpaa, H.}
    2949 }
    2950 @book{Wilson1984a,
    2951   year = {1984},
    2952   title = {Theory and Practice of Scanning Optical Microscopy},
    2953   address = {London,New York},
    2954   annote = {ph2341},
    2955   publisher = {Academic Press},
    2956   author = {Wilson, T. and Sheppard, C.J.R.}
    2957 }
    2958 @misc{Zach2001,
    2959   year = {2001},
    2960   title = {Method for detecting geometrical-optical aberrations},
    2961   howpublished = {WO 01.56057},
    2962   author = {Zach, J.}
    2963 }
    2964 @article{Lee2001,
    2965   number = {16},
    2966   month = {July},
    2967   year = {2001},
    2968   title = {Neural Synergy in Visual Grouping: When Good Continuation Meets Common Fate},
    2969   pages = {2057--2064},
    2970   journal = {Vision Research},
    2971   volume = {41},
    2972   author = {Lee, S.-H. and Blake, R.}
    2973 }
    2974 @article{Lichte1996,
    2975   year = {1996},
    2976   title = {Electron holography: optimum position of the biprism in the electron microscope},
    2977   pages = {89-109},
    2978   journal = {Ultramicroscopy},
    2979   volume = {64},
    2980   author = {Lichte, H.}
    2981 }
    2982 @article{Lee2005,
    2983   number = {4},
    2984   year = {2005},
    2985   title = {Accurate {FRET} Measurements within Single Diffusing Biomolecules Using Alternating-Laser Excitation},
    2986   pages = {2939-2953},
    2987   journal = {Biophysical Journal},
    2988   volume = {88},
    2989   author = {Lee, N.K. and Kapanidis, A.N. and Wang, Y. and Michalet, X. and Mukhopadhyay, J. and Ebright, R.H. and Weiss, S.}
    2990 }
    2991 @misc{Verbeek1999,
    2992   year = {1999},
    2993   note = {The GST as a projection operator},
    2994   howpublished = {private communications},
    2995   author = {Verbeek, P.W.}
    2996 }
    2997 @article{Cuisenaire1999,
    2998   number = {2},
    2999   year = {1999},
    3000   title = {Fast Euclidean distance transformation by propagation using multiple neighborhoods},
    3001   pages = {163-172},
    3002   journal = { Computer Vision and Image Understanding},
    3003   volume = {76},
    3004   author = {Cuisenaire, O. and Macq, B.}
    3005 }
    3006 @inproceedings{Verbeek1995,
    3007   month = {June 6-9},
    3008   year = {1995},
    3009   title = {Approximate Analytic Paraboloid Dilation},
    3010   booktitle = {9th Scandinavian Conference on Image Analysis (Uppsala, Sweden)},
    3011   pages = {95--102},
    3012   editor = {Borgefors, G.},
    3013   volume = {1},
    3014   author = {Verbeek, P.W. and Vliet, L.J. van}
    3015 }
    3016 @inproceedings{Verbeek1998,
    3017   month = {17-20 August},
    3018   year = {1998},
    3019   title = {Improved Curvature and Anisotropy Estimation for Curved Line Bundles},
    3020   booktitle = {ICPR'98, Proc. 14th Int. Conference on Pattern Recognition},
    3021   pages = {528--533},
    3022   editor = {Jain, A.K. and Venkatesh, S. and Lovell, B.C.},
    3023   publisher = {IEEE Computer Society Press, Los Alamitos},
    3024   author = {Verbeek, P.W. and van Vliet, L.J. and van de Weijer, J.}
    3025 }
    3026 @article{Verbeek1990,
    3027   year = {1990},
    3028   title = {Shading from shape, the eikonal equation solved by grey-weighted distance transform},
    3029   pages = {681--690},
    3030   journal = {Pattern Recognition Letters},
    3031   volume = {11},
    3032   author = {Verbeek, P.W. and Verwer, B.J.H}
    3033 }
    3034 @misc{Verbeek1996,
    3035   year = {1996},
    3036   title = {Angular Deconvolution},
    3037   howpublished = {Internal Communication},
    3038   author = {Verbeek, P.W.}
    3039 }
    3040 @article{Verbeek1994,
    3041   number = {7},
    3042   year = {1994},
    3043   title = {On the location error of curved edges in low-pass filtered {2-D} and {3-D} images},
    3044   pages = {726--733},
    3045   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3046   volume = {16},
    3047   author = {Verbeek, P.W. and Vliet, L.J. van}
    3048 }
    3049 @article{Verbeek1993,
    3050   number = {1},
    3051   year = {1993},
    3052   title = {Estimators of {2D} edge length and position, {3D} surface area and position in sampled grey-valued images},
    3053   pages = {46--61},
    3054   journal = {BioImaging},
    3055   volume = {1},
    3056   author = {Verbeek, P.W. and Vliet, L.J. van}
    3057 }
    3058 @inproceedings{Verbeek1992,
    3059   month = {August 30-September 3},
    3060   year = {1992},
    3061   title = {Line and Edge Detection by Symmetry Filters},
    3062   booktitle = {Proc. 11th IAPR Int. Conf. on Pattern Recognition (ICPR11, The Hague, The Netherlands)},
    3063   pages = {749--753},
    3064   volume = {III},
    3065   publisher = {IEEE Computer Society Press, Los Alamitos, USA},
    3066   author = {Verbeek, P.W. and Vliet, L.J. van}
    3067 }
    3068 @article{Griffith1973,
    3069   number = {4},
    3070   month = {April},
    3071   year = {1973},
    3072   title = {Edge Detection in Simple Scenes Using A Priori Information},
    3073   pages = {371--381},
    3074   journal = {IEEE Transactions on Computers},
    3075   volume = {22},
    3076   author = {Griffith, A.K.}
    3077 }
    3078 @article{Chermant2001,
    3079   year = {2001},
    3080   title = {Some Fields of Applications of Automatic Image Analysis in Civil Engineering},
    3081   pages = {157--169},
    3082   journal = {Cement {\&} Concrete Composites},
    3083   volume = {23},
    3084   author = {Chermant, J.-L. and Chermant, L. and Coster, M. and Dequiedt, A.-S. and Redon, C.}
    3085 }
    3086 @article{Thrift1983,
    3087   number = {3},
    3088   year = {1983},
    3089   title = {Approximating Point-Set Images by Line Segments Using a Variation of the {H}ough Transform},
    3090   pages = {383--394},
    3091   journal = {Computer Vision, Graphics and Image Processing},
    3092   volume = {21},
    3093   annote = {key_radon},
    3094   author = {Thrift, P.R. and Dunn, S.M.}
    3095 }
    3096 @misc{Rull1993,
    3097   year = {1993},
    3098   title = {{BARRY}: An Autonomous Train-Spotter},
    3099   author = {Rull, P.H.}
    3100 }
    3101 @article{Schellman1980a,
    3102   number = {3},
    3103   year = {1980},
    3104   title = {The flexibility of {DNA : II. Spontaneous} and ligand induced distortions},
    3105   pages = {329-337},
    3106   journal = {Biophysical Chemistry},
    3107   volume = {11},
    3108   author = {Schellman, J.A.}
    3109 }
    3110 @article{Tang2001,
    3111   number = {8},
    3112   year = {2001},
    3113   title = {N-dimensional tensor voting and application to epipolar geometry estimation},
    3114   pages = {829 -844},
    3115   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3116   volume = {23},
    3117   author = {Tang, Chi-Keung and Medioni, G. and Lee, Mi-Suen}
    3118 }
    3119 @article{Park1996,
    3120   number = {11},
    3121   year = {1996},
    3122   title = {Scale-Space Using Mathematical Morphology},
    3123   pages = {1121--1126},
    3124   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3125   volume = {18},
    3126   author = {Park, K.-R. and Lee, C.-N.}
    3127 }
    3128 @book{Haykin1999,
    3129   edition = {second},
    3130   year = {1999},
    3131   title = {Neural Networks, a comprehensive foundation},
    3132   publisher = {Prentice-Hall},
    3133   author = {Haykin, S.}
    3134 }
    3135 @inproceedings{Faugeras1992,
    3136   series = {Lecture Notes in Computer Science 588},
    3137   month = {May},
    3138   year = {1992},
    3139   title = {What Can Be Seen in Three Dimensions with an Uncalibrated Stereo Rig},
    3140   booktitle = {Second European Conference on Computer Vision},
    3141   pages = {563--578},
    3142   editor = {Sandini, G.},
    3143   address = {Santa Margherita Ligure, Italy},
    3144   publisher = {Springer},
    3145   author = {Faugeras, O.D.}
    3146 }
    3147 @article{Dequiedt2001,
    3148   year = {2001},
    3149   title = {Study of Phase Dispersion in Concrete by Image Analysis},
    3150   pages = {215--226},
    3151   journal = {Cement \& Concrete Composites},
    3152   volume = {23},
    3153   author = {Dequiedt, A.-S. and Coster, M. and Chermant, L. and Chermant, J.-L.}
    3154 }
    3155 @article{Tang2002,
    3156   number = {6},
    3157   year = {2002},
    3158   title = {Curvature-Augmented Tensor Voting for Shape Interference from Noisy 3D Data},
    3159   pages = {858--864},
    3160   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3161   volume = {24},
    3162   author = {Tang, C.-K. and Medioni, G.}
    3163 }
    3164 @inproceedings{Hartley1992a,
    3165   series = {Lecture Notes in Computer Science 588},
    3166   month = {May},
    3167   year = {1992},
    3168   title = {Estimation of Relative Camera Positions for Uncalibrated Cameras},
    3169   booktitle = {Second European Conference on Computer Vision},
    3170   pages = {579--587},
    3171   editor = {Sandini, G.},
    3172   address = {Santa Margherita Ligure, Italy},
    3173   publisher = {Springer},
    3174   author = {Hartley, R.I.}
    3175 }
    3176 @article{Dalen2002,
    3177   month = {November},
    3178   year = {2002},
    3179   title = {Determination of the Water Droplet Size Distribution of Fat Spreads using Confocal Scanning Laser Microscopy},
    3180   pages = {116--133},
    3181   journal = {Journal of Microscopy},
    3182   volume = {208 Pt. 2},
    3183   author = {Dalen, G. van}
    3184 }
    3185 @article{Bergsma2001,
    3186   number = {4},
    3187   year = {2001},
    3188   title = {Velocity Estimation of Spots in 3D Confocal Images Sequences of Living Cells},
    3189   pages = {261--272},
    3190   journal = {Cytometry},
    3191   volume = {43},
    3192   author = {Bergsma, C.B.J. and Streekstra, G.J. and Smeulders, A.W.M. and Manders, E.M.M.}
    3193 }
    3194 @article{Florack1999,
    3195   number = {2/3},
    3196   year = {1999},
    3197   title = {Pseudo-linear Scale-space Theory},
    3198   pages = {247--259},
    3199   journal = {International Journal of Computer Vision},
    3200   volume = {31},
    3201   author = {Florack, L.M.J. and Maas, R. and Niessen, W.J.}
    3202 }
    3203 @phdthesis{Florack1993,
    3204   year = {1993},
    3205   title = {The Syntactical Structure of Scalar Images},
    3206   school = {University of Utrecht, The Netherlands},
    3207   author = {Florack, L.M.J.}
    3208 }
    3209 @article{Welch1967,
    3210   year = {1967},
    3211   title = {The use of fast Fourier Transform for the estimation of power spectra: A method based on time averaging over short, modified periodograms},
    3212   pages = {70-73},
    3213   journal = {IEEE Transactions on Audio and Electroacoustics},
    3214   volume = {15},
    3215   author = {Welch, P.}
    3216 }
    3217 @article{Florack1998,
    3218   number = {3},
    3219   year = {1998},
    3220   title = {The Intrinsic Structure of Optic Flow Incorporating Measurement Duality},
    3221   pages = {263--286},
    3222   journal = {International Journal of Computer Vision},
    3223   volume = {27},
    3224   author = {Florack, L.M.J. and Niessen, W.J. and Nielsen, M.}
    3225 }
    3226 @article{Florack1992,
    3227   number = {6},
    3228   month = {July},
    3229   year = {1992},
    3230   title = {Scale and the Differential Structure of Images},
    3231   pages = {376--388},
    3232   journal = {Image and Vision Computing},
    3233   volume = {10},
    3234   author = {Florack, L.M.J. and Haar Romeny, B.M. ter and Koenderink, J.J. and Viergever, M.A.}
    3235 }
    3236 @article{Florack1994,
    3237   number = {4},
    3238   month = {December},
    3239   year = {1994},
    3240   title = {Linear Scale-Space},
    3241   pages = {325--351},
    3242   journal = {Journal of Mathematical Imaging and Vision},
    3243   volume = {4},
    3244   author = {Florack, L.M.J. and Haar Romeny, B.M. ter and Koenderink, J.J. and Viergever, M.A.}
    3245 }
    3246 @book{Florack1997,
    3247   year = {1997},
    3248   title = {Image Structure},
    3249   publisher = {Kluwer Academic Publishers},
    3250   author = {Florack, L.M.J.}
    3251 }
    3252 @article{Kim1990,
    3253   number = {2},
    3254   year = {1990},
    3255   title = {Shape Description of Biological Objects via Stereo Light Microscopy},
    3256   pages = {475--489},
    3257   journal = {IEEE Transactions on Systems},
    3258   volume = {20},
    3259   author = {Kim, N.H. and Bovik, A.C. and Aggarwal, S.J.}
    3260 }
    3261 @article{Borgefors1996,
    3262   number = {3},
    3263   year = {1996},
    3264   title = {On digital distance transforms in three dimensions},
    3265   pages = {344-371},
    3266   journal = {Computer Vision and Image Understanding},
    3267   volume = {64},
    3268   author = {Borgefors, G.}
    3269 }
    3270 @article{Komenda2001,
    3271   number = {2--3},
    3272   year = {2001},
    3273   title = {Automatic Recognition of Complex Microstructures using the Image Classifier},
    3274   pages = {87--92},
    3275   journal = {Materials Characterization},
    3276   volume = {46},
    3277   author = {Komenda, J.}
    3278 }
    3279 @article{Vetterli1984,
    3280   year = {1984},
    3281   title = {Simple {FFT} and {DCT} Algorithms with Reduced Number of Operations},
    3282   pages = {267--278},
    3283   journal = {Signal Processing},
    3284   volume = {6},
    3285   annote = {key_fft},
    3286   author = {Vetterli, M. and Nussbaumer, H.J.}
    3287 }
    3288 @article{Vetterli1986,
    3289   number = {3},
    3290   year = {1986},
    3291   title = {Filter Banks Allowing Perfect Reconstruction},
    3292   pages = {219--244},
    3293   journal = {Signal Processing},
    3294   volume = {10},
    3295   author = {Vetterli, M.}
    3296 }
    3297 @article{Florack1996,
    3298   year = {1996},
    3299   title = {The {Gaussian} Scale-Space Paradigm and the Multiscale Local Jet},
    3300   pages = {61--75},
    3301   journal = {International Journal of Computer Vision},
    3302   volume = {18},
    3303   author = {Florack, L.M.J. and Haar Romeny, B.M. ter and Viergever, M.A. and Koenderink, J.J.}
    3304 }
    3305 @phdthesis{Molenaar2003,
    3306   month = {June},
    3307   year = {2003},
    3308   title = {Methods for molecular analysis in living cells},
    3309   address = {Leiden, The Netherlands},
    3310   school = {Leiden University Medical Center},
    3311   author = {Molenaar, C.}
    3312 }
    3313 @inproceedings{Leavers1990,
    3314   year = {1990},
    3315   title = {The Dynamic Generalized {H}ough transform},
    3316   booktitle = {Computer Vision -- ECCV90. Proceedings, 1990},
    3317   pages = {592--594},
    3318   editor = {O. Faugeras},
    3319   publisher = {Springer-Verlag},
    3320   author = {Leavers, V.F.}
    3321 }
    3322 @book{Leavers1992,
    3323   year = {1992},
    3324   title = {Shape Detection in Computer Vision Using the {H}ough Transform},
    3325   address = {London},
    3326   publisher = {Springer-Verlag},
    3327   author = {Leavers, V.F.}
    3328 }
    3329 @article{Morgan2002,
    3330   year = {2002},
    3331   title = {Structure of the Mammalian Ribosome-Channel Complex at 17 Resolution},
    3332   pages = {871-886},
    3333   journal = {Journal of Molecular Biology},
    3334   volume = {324},
    3335   author = {Morgan, D.G. and Mnntret, J.-F. and Neuhof, A. and Rapoport, T.A. and Akey, C.W.}
    3336 }
    3337 @article{Su2003,
    3338   year = {2003},
    3339   title = {High resolution EELS using monochromator and high performance spectrometer: comparison of $V_2O_5$ {ELNES} with {NEXAFS} and band structure calculations},
    3340   pages = {235-238},
    3341   journal = {Micron},
    3342   volume = {34},
    3343   author = {Su, D.S. and Zandbergen, H.W. and Tiemeijer, P.C. and Kothleitner, G. and {H\"avecker}, M. and {H\'ebert}, C. and Knop-Gericke, A. and Freitag, B.H. and Hofer, F. and {Schl\"ogl}, R.}
    3344 }
    3345 @article{Thirion1995,
    3346   number = {2},
    3347   year = {1995},
    3348   title = {Computing the differential characteristics of isointensity surfaces},
    3349   pages = {190--202},
    3350   journal = {Computer Vision and Image Understanding},
    3351   volume = {61},
    3352   author = {Thirion, J.P. and Gourdon, A.}
    3353 }
    3354 @article{Rao1992,
    3355   number = {7},
    3356   month = {July},
    3357   year = {1992},
    3358   title = {Computerized Flow Field Analysis: Oriented Texture Fields},
    3359   pages = {693--709},
    3360   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3361   volume = {14},
    3362   author = {Rao, A.R. and Jain, R.C.}
    3363 }
    3364 @article{Potter1999,
    3365   year = {1999},
    3366   title = {Leginon: a system for fully automated acquisition of 1000 electron micrographs a day},
    3367   pages = {153-161},
    3368   journal = {Ultramicroscopy},
    3369   volume = {77},
    3370   author = {Potter, C.S. and Chu, H. and Frey, B. and Green, C. and Kisseberth, N. and Madden, T.J. and Miller, K.L. and Nahrstedt, K. and Pulokas, J. and Reilein, A. and Tcheng, D. and Weber, D. and Carragher, B.}
    3371 }
    3372 @article{Ferraro1988,
    3373   number = {5},
    3374   month = {May},
    3375   year = {1988},
    3376   title = {Relationship between Integral Transform Invariances and {Lie} Group Theory},
    3377   pages = {738--742},
    3378   journal = {Journal of the Optical Society of America A},
    3379   volume = {5},
    3380   author = {Ferraro, M. and Caelli, T.M.}
    3381 }
    3382 @article{Rao1991,
    3383   number = {2},
    3384   month = {March},
    3385   year = {1991},
    3386   title = {Computing Oriented Texture Fields},
    3387   pages = {157--185},
    3388   journal = {CVGIP: Graphical Models and Image Processing},
    3389   volume = {53},
    3390   author = {Rao, A.R. and Schunck, B.G.}
    3391 }
    3392 @article{Gaspar1997,
    3393   year = {1997},
    3394   title = {Partially Folded States of the Capsid Protein of Cowpea Severe Mosaic Virus in the Disassembly Pathway},
    3395   pages = {456-466},
    3396   journal = {Journal of Molecular Biology},
    3397   volume = {273},
    3398   author = {Gaspar, L.P. and Johnson, J.E. and Silva, J.L. and Poian, A.T. da}
    3399 }
    3400 @article{Rieger2004,
    3401   number = {6},
    3402   year = {2004},
    3403   title = {A systematic approach to {nD} orientation representation},
    3404   pages = {453-459},
    3405   journal = {Image and Vision Computing},
    3406   volume = {22},
    3407   author = {Rieger, B. and Vliet, L.J. van}
    3408 }
    3409 @book{Papoulis1977,
    3410   year = {1977},
    3411   title = {Signal Analysis},
    3412   address = {New York},
    3413   publisher = {McGraw-Hill},
    3414   author = {Papoulis, A.}
    3415 }
    3416 @article{Hanbury2001,
    3417   number = {12},
    3418   month = {December},
    3419   year = {2001},
    3420   title = {Morphological Operators on the Unit Circle},
    3421   pages = {1842--1850},
    3422   journal = {IEEE Transactions on Image Processing},
    3423   volume = {10},
    3424   author = {Hanbury, Allan G. and Serra, Jean}
    3425 }
    3426 @inbook{Porat1994a,
    3427   year = {1994},
    3428   title = {Digital Signal Processing of Random Signals: Theory and Methods},
    3429   chapter = {11.4},
    3430   publisher = {Prentice Hall},
    3431   author = {Porat, B.}
    3432 }
    3433 @article{Villasenor1987,
    3434   month = {December},
    3435   year = {1987},
    3436   title = {Optical Phase Obtained by Analogue Hartley Transformation},
    3437   pages = {735--737},
    3438   journal = {Nature},
    3439   volume = {330},
    3440   author = {Villasenor, J. and Bracewell, R.N.}
    3441 }
    3442 @article{Lacey1998,
    3443   number = {5},
    3444   year = {1998},
    3445   title = {A Multi-Stage Approach to the Dense Estimation of Disparity from Stereo {SEM} Images},
    3446   pages = {373--383},
    3447   journal = {Image and Vision Computing},
    3448   volume = {16},
    3449   author = {Lacey, A.J. and Thacker, N.A. and Crossley, S. and Yates, R.B.}
    3450 }
    3451 @article{Sengupta2001,
    3452   year = {2001},
    3453   title = {Visualization of protein {S1} within the {30S} ribosomal subunit and its interaction with messenger {RNA}},
    3454   pages = {11991-11996},
    3455   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    3456   volume = {98},
    3457   author = {Sengupta, J. and Agrawal, R.K. and Frank, J.}
    3458 }
    3459 @article{Domer2003,
    3460   number = {10},
    3461   year = {2003},
    3462   title = {High-speed transmission electron microscope},
    3463   pages = {4369-4372},
    3464   journal = {Review of Scientific Instruments},
    3465   volume = {74},
    3466   author = {{D\"omer}, H. and Bostanjoglo, O.}
    3467 }
    3468 @inproceedings{Lacey1996,
    3469   year = {1996},
    3470   title = {Surface Approximation from Industrial {SEM} Images},
    3471   booktitle = {Proceedings of the British Machine Vision Conference},
    3472   address = {Edinburgh, Scotland},
    3473   author = {Lacey, A.J. and Thacker, N.A. and Yates, R.B.},
    3474   organization = {University of Edinburgh}
    3475 }
    3476 @article{Kimia1992,
    3477   year = {1992},
    3478   title = {On the Evolution of Curves via a Function of Curvature. I. The Classical Case},
    3479   pages = {438--458},
    3480   journal = {Journal of Mathematical Analysis and Applications},
    3481   volume = {163},
    3482   author = {Kimia, B. and Tannenbaum, A. and Zucker, S.W.}
    3483 }
    3484 @unpublished{Vliet1998b,
    3485   title = {Adaptive Filtering. From Scaleable Elliptic, and Banana to Leech Filters},
    3486   author = {Vliet, L.J. van}
    3487 }
    3488 @article{Giro2004,
    3489   number = {4},
    3490   year = {2004},
    3491   title = {Single Molecule Studies of {RNA} Secondary Structure: {AFM} of {TYMV} Viral {RNA}},
    3492   pages = {235-245},
    3493   journal = {Microscopy Research and Technique},
    3494   volume = {65},
    3495   author = {Giro, A. and Bergia, A. and Zuccheri, G. and Bink, H.H.J. and Pleij, C.W.A. and Samori, B.}
    3496 }
    3497 @inbook{Vliet1998a,
    3498   edition = {2nd},
    3499   year = {1998},
    3500   title = {Cell Biology},
    3501   pages = {109-120},
    3502   editor = {Celis, J.E.},
    3503   volume = {III},
    3504   address = {New York},
    3505   chapter = {Digital Fluorescence Imaging Using Cooled {CCD} Array Cameras},
    3506   publisher = {Academic Press},
    3507   author = {Vliet, L.J. van and Sudar, D. and Young, I.T.}
    3508 }
    3509 @unpublished{Vliet1998c,
    3510   title = {Detection of End-points},
    3511   author = {Vliet, L.J. van}
    3512 }
    3513 @article{Pulokas1999,
    3514   year = {1999},
    3515   title = {Improving the positional accuracy of the goniometer on the {Philips CM} series {TEM}},
    3516   pages = {250-256},
    3517   journal = {Journal of Structural Biology},
    3518   volume = {128},
    3519   author = {Pulokas, J. and Green, C. and Kisseberth, N. and Potter, C.S. and Carragher, B.}
    3520 }
    3521 @article{Ficz2005,
    3522   number = {17},
    3523   year = {2006},
    3524   title = {Polycomb group complexes exchange rapidly in living {Drosophila}},
    3525   pages = {3964-3976},
    3526   journal = {Development},
    3527   volume = {132},
    3528   author = {Ficz, G. and Heintzmann, R. and Arndt-Jovin, D.J.}
    3529 }
    3530 @article{Thovert1993,
    3531   month = {April},
    3532   year = {1993},
    3533   title = {Computerized Characterization of the Geometry of Real Porous Media: their Discretization, Analysis and Interpretation},
    3534   pages = {65--79},
    3535   journal = {Journal of Microscopy},
    3536   volume = {170, Pt 1},
    3537   author = {Thovert, J.F. and Salles, J. and Adler, P.M.}
    3538 }
    3539 @book{Kincaid1991,
    3540   year = {1991},
    3541   title = {Numerical analysis; mathematics of scientific computing},
    3542   address = {Brooks/Cole},
    3543   publisher = {Pacific Grove},
    3544   author = {Kincaid,D.}
    3545 }
    3546 @article{Netten1994,
    3547   year = {1994},
    3548   title = {A fast scanner for fluorescence microscopy using a {2-D CCD} amd time delayed integration},
    3549   pages = {184-192},
    3550   journal = {Bioimaging},
    3551   volume = {2},
    3552   author = {Netten, H. and Vliet, L.J. van and Boddeke, F.R. and Jong, P. de and Young, I.T.}
    3553 }
    3554 @article{Loncaric1998,
    3555   number = {8},
    3556   year = {1998},
    3557   title = {A Survey of Shape Analysis Techniques},
    3558   pages = {983--1001},
    3559   journal = {Pattern Recognition},
    3560   volume = {31},
    3561   author = {Loncaric, S.}
    3562 }
    3563 @article{Malladi1995,
    3564   number = {2},
    3565   month = {February},
    3566   year = {1995},
    3567   title = {Shape Modeling with Front Propagation: A Level Set Approach},
    3568   pages = {158--175},
    3569   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3570   volume = {17},
    3571   author = {Malladi, R. and Sethian, J.A. and Vemuri, B.C.}
    3572 }
    3573 @book{Bronstein1999,
    3574   edition = {4th},
    3575   year = {1999},
    3576   title = {Taschenbuch der Mathematik},
    3577   address = {Thun, Frankfurt (Main)},
    3578   publisher = {Verlag Harri Deutsch},
    3579   author = {Bronstein, I. N. and Semendjajew, K. A. and Musiol, G. and {M\"uhlig}, H.}
    3580 }
    3581 @article{Kundur1996,
    3582   number = {3},
    3583   month = {May},
    3584   year = {1996},
    3585   title = {Blind Image Deconvolution},
    3586   pages = {43--64},
    3587   journal = {IEEE Signal Processing Magazine},
    3588   volume = {13},
    3589   author = {Kundur, D. and Hatzinakos, D.}
    3590 }
    3591 @article{Levi1970,
    3592   number = {1},
    3593   month = {August},
    3594   year = {1970},
    3595   title = {A grey-weighted skeleton},
    3596   pages = {62-91},
    3597   journal = {Information and Control},
    3598   volume = {17},
    3599   author = {Levi, G. and Montanari, U.}
    3600 }
    3601 @book{Press1992,
    3602   edition = {2},
    3603   year = {1992},
    3604   title = {Numerical Recipes in C: The Art of Scientific Computing},
    3605   address = {Cambridge},
    3606   publisher = {Cambridge University Press},
    3607   author = {Press, W.H. and Teukolsky, S.A. and Vetterling, W.T. and Flannery, B.P.}
    3608 }
    3609 @article{Luengo2005,
    3610   number = {12},
    3611   year = {2005},
    3612   title = {The Generalized Radon Transform: Sampling, Accuracy and Memory Considerations},
    3613   pages = {2494-2505},
    3614   journal = {Pattern Recognition},
    3615   volume = {38},
    3616   author = {Luengo Hendriks, C.L. and Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van}
    3617 }
    3618 @inproceedings{Lambert2000,
    3619   year = {2000},
    3620   title = {Filtering and Segmentation: the Specificity of Color Images},
    3621   booktitle = {International Conference on Color in Graphics and Image Processing CGIP'2000},
    3622   author = {Lambert, P. and Macaire, L.}
    3623 }
    3624 @article{Rivetti1998,
    3625   number = {1},
    3626   year = {1998},
    3627   title = {Polymer chain statistics and conformational analysis of {DNA} molecules with bends or sections of different flexibility},
    3628   pages = {41-59},
    3629   journal = {Journal of Molecular Biology},
    3630   volume = {280},
    3631   author = {Rivetti, C. and Walker, C. and Bustamante, C.}
    3632 }
    3633 @inproceedings{Luengo2000,
    3634   series = {Proc. SPIE Electronic Imaging 2000 Conf.},
    3635   year = {2000},
    3636   title = {Improving resolution to reduce aliasing in an undersampled image sequence},
    3637   booktitle = {Sensors and Camera Systems for Sensors and Camera Systems for Scientific, Industrial, and Digital Photography Applications},
    3638   pages = {2134--222},
    3639   editor = {Blouke, M. M. and Williams, G.M. and Sampat, N. and Yeh, T.},
    3640   volume = {3965},
    3641   address = {San Jose},
    3642   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    3643 }
    3644 @inproceedings{Luengo2003,
    3645   series = {Lecture Notes on Computer Science},
    3646   year = {2003},
    3647   title = {Basic Morphological Operations, Band-Limited Images and Sampling},
    3648   booktitle = {Scale Space Methods in Computer Vision, Proceedings of the Fourth International Conference, Scale-Space 2003},
    3649   pages = {313-324},
    3650   editor = {Griffin, L.D. and Lillholm, M.},
    3651   volume = {2695},
    3652   address = {Berlin},
    3653   publisher = {Springer-Verlag},
    3654   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    3655 }
    3656 @article{Rivetti1996,
    3657   year = {1996},
    3658   title = {Scanning Force Microscopy of {DNA} Deposited onto Mica: Equilibration versus Kinetic Trapping Studied by Statistical Polymer Chain Analysis},
    3659   pages = {919-932},
    3660   journal = {Journal of Molecular Biology},
    3661   volume = {264},
    3662   author = {Rivetti, C. and Guthold, M. and Bustamante, C.}
    3663 }
    3664 @article{Kroustrup1988,
    3665   month = {February},
    3666   year = {1988},
    3667   title = {Stereological Analysis of Three-Dimensional Structure Organization of Surfaces in Multiphase Specimens: Statistical Methods and Model-Inferences},
    3668   pages = {135--152},
    3669   journal = {Journal of Microscopy},
    3670   volume = {149, Pt 2},
    3671   author = {Kroustrup, J.P. and Gundersen, H.J.G. and V,h, M.}
    3672 }
    3673 @article{Saxl1993,
    3674   month = {April},
    3675   year = {1993},
    3676   title = {Contact Distances and Random Free Paths},
    3677   pages = {53--64},
    3678   journal = {Journal of Microscopy},
    3679   volume = {170, Pt 1},
    3680   author = {Saxl, I.}
    3681 }
    3682 @article{Hildreth1984,
    3683   year = {1984},
    3684   title = {The computation of the velocity field},
    3685   pages = {189-220},
    3686   journal = {Proceedings of the Royal Society of London B},
    3687   volume = {221},
    3688   author = {Hildreth, E.C.}
    3689 }
    3690 @article{Summerscales2001,
    3691   month = {February},
    3692   year = {2001},
    3693   title = {Voronoi Cells, Fractal Dimensions and Fibre Composites},
    3694   pages = {153--162},
    3695   journal = {Journal of Microscopy},
    3696   volume = {201, Pt 2},
    3697   author = {Summerscales, J. and Guild, F.J. and Pearce, N.R.L. and Russell, P.M.}
    3698 }
    3699 @article{Ruiz2003,
    3700   year = {2003},
    3701   title = {The 10.8- structure of Saccharomyces cerevisiae phosphofructokinase determined by cryoelectron microscopy: localization of putative fructose 6-phosphate binding sites},
    3702   pages = {124-134},
    3703   journal = {Journal of Structural Biology},
    3704   volume = {143},
    3705   author = {Ruiz, T. and {Koppenschl\"ager}, G. and Radermacher, M.}
    3706 }
    3707 @article{Lagerholm2006,
    3708   number = {10},
    3709   year = {2006},
    3710   title = {Analysis method for measuring submicroscopic distances with blinking Quantum Dots},
    3711   pages = {3050-3060},
    3712   journal = {Biophysical Journal},
    3713   volume = {91},
    3714   author = {Lagerholm, B.C. and Averett, L. and Weinreb, G.E. and Jacobson, K. and Thompson, N.L.}
    3715 }
    3716 @article{Berney2003,
    3717   number = {6},
    3718   year = {2003},
    3719   title = {{FRET} or no {FRET}: A Quantitative Comparison},
    3720   pages = {3992-4010},
    3721   journal = {Biophysical Journal},
    3722   volume = {84},
    3723   author = {Berney, C. and Danuser, G.}
    3724 }
    3725 @article{Harrigan1984,
    3726   year = {1984},
    3727   title = {Characterization of Microstructural Anisotropy in Orthotropic Materials Using a Second Rank Tensor},
    3728   pages = {761--767},
    3729   journal = {Journal of Materials Science},
    3730   volume = {19},
    3731   author = {Harrigan, T.P. and Mann, R.W.}
    3732 }
    3733 @article{Mironov2003,
    3734   year = {2003},
    3735   title = {{ER-to-Golgi} Carriers Arise through Direct En Bloc Protrusion and Multistage Maturation of Specialized {ER} Exit Domains},
    3736   pages = {583-594},
    3737   journal = {Developmental Cell},
    3738   volume = {5},
    3739   author = {Mironov, A.A. and Mironov, A.A.Jr. and Beznoussekno, G.V. and Trucco, A. and Lupetti, P. and Smith, J.D. and Geerts, W.J.C. and Koster, A.J. and Burger, K.N.J. and Martone, M.E. and Deerinck, T.J. and Ellisman, M.H. and Luini, A.}
    3740 }
    3741 @book{Frankel1997,
    3742   year = {1997},
    3743   title = {The Geometry of Physics},
    3744   address = {Cambridge},
    3745   publisher = {Cambridge University Press},
    3746   author = {T. Frankel}
    3747 }
    3748 @article{Shaner2005,
    3749   year = {2005},
    3750   title = {A guide to choosing fluorescent proteins},
    3751   pages = {905-909},
    3752   journal = {Nature Methods},
    3753   volume = {2},
    3754   author = {Shaner, N.C. and Steinbach, P.A. and Tsien, R.Y.}
    3755 }
    3756 @inproceedings{Lozier1994,
    3757   series = {Proceedings of Symposia in Applied Mathematics},
    3758   month = {December},
    3759   year = {1994},
    3760   title = {Numerical Evaluation of Special Functions},
    3761   booktitle = {Mathematics of Computation 1943--1993: A Half-Century of Computational Mathematics},
    3762   pages = {79--125},
    3763   note = {{\tt http://math.nist.gov/nesf/}},
    3764   editor = {Gautschi, W.},
    3765   volume = {48},
    3766   author = {Lozier, D.W. and Olver, F.W.J.},
    3767   organization = {American Mathematical Society}
    3768 }
    3769 @inbook{Simmonds1982a,
    3770   year = {1982},
    3771   title = {A Brief on Tensor Analysis},
    3772   chapter = {1,2},
    3773   publisher = {Spring-Verlag},
    3774   author = {Simmonds, J.G.}
    3775 }
    3776 @article{Schoenle2002,
    3777   number = {10},
    3778   year = {2002},
    3779   title = {Calculation of vectorial three-dimensional transfer functions in large angle focusing systems},
    3780   pages = {2121-2126},
    3781   journal = {Journal of the Optical Society of America A},
    3782   volume = {19},
    3783   author = {{Sch\"onle}, A. and Hell, S.W.}
    3784 }
    3785 @phdthesis{Kempen1999a,
    3786   year = {1999},
    3787   title = {Image Restoration in Fluorescence Microscopy},
    3788   address = {Delft, The Netherlands},
    3789   school = {Delft University of Technology},
    3790   author = {Kempen, G.M.P. van}
    3791 }
    3792 @article{Min1995,
    3793   year = {1995},
    3794   title = {Comparison of three-dimensional imaging properties between two-photon and single-photon fluorescence microscopy},
    3795   pages = {128--137},
    3796   journal = {Journal of Microscopy},
    3797   volume = {177},
    3798   author = {Min, G. and Sheppard, C.J.R.}
    3799 }
    3800 @article{Min1990,
    3801   year = {1990},
    3802   title = {Image formation in two-photon fluorescence microscopy},
    3803   pages = {104--106},
    3804   journal = {Optik},
    3805   volume = {86},
    3806   author = {Min, G. and Sheppard, C.J.R.}
    3807 }
    3808 @phdthesis{Karlholm1998,
    3809   year = {1998},
    3810   title = {Local Signal Models for Image Sequence Analysis},
    3811   address = {{Link\"oping}, Sweden},
    3812   school = {{Link\"oping} University},
    3813   author = {Karlholm, J.}
    3814 }
    3815 @article{Kimoto2005,
    3816   year = {2005},
    3817   title = {Advantages of a monochromator for bandgap measurements using electron energy-loss spectroscopy},
    3818   pages = {185-189},
    3819   journal = {Micron},
    3820   volume = {36},
    3821   author = {Kimoto, K. and Kothleitner, G. and Grogger, W. and Matsui, Y. and Hofer, F.}
    3822 }
    3823 @book{Mallat2001,
    3824   edition = {2nd edition},
    3825   year = {1999},
    3826   title = {A wavelet tour of signal processing},
    3827   address = {New York},
    3828   publisher = {John Wiley \& Sons},
    3829   author = {Mallat, S.G.}
    3830 }
    3831 @book{Walter1994,
    3832   edition = {3},
    3833   year = {1994},
    3834   title = {{Einf\"uhrung in die Theorie der Distributionen}},
    3835   publisher = {Spektrum Akademischer Verlag},
    3836   author = {Walter, W.}
    3837 }
    3838 @misc{GinkelWWWqqnvphbv2001,
    3839   title = {http://www.ph.tn.tudelft.nl/\char126michael/qqnvphnv.html},
    3840   key = {ZZZZ}
    3841 }
    3842 @article{Cucchiara1998,
    3843   number = {7},
    3844   month = {July},
    3845   year = {1998},
    3846   title = {The Vector-Gradient Hough Transform},
    3847   pages = {746--750},
    3848   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    3849   volume = {20},
    3850   annote = {key_radon},
    3851   author = {Cucchiara, R. and Filicori, F.}
    3852 }
    3853 @inproceedings{Mullikien1994,
    3854   month = {February 9-10},
    3855   year = {1994},
    3856   title = {Methods for {CCD} camera characterization},
    3857   booktitle = {SPIE Proceedings},
    3858   pages = {73-84},
    3859   editor = {Titus, H.C. and Waks, A.},
    3860   volume = {2173},
    3861   address = {San Jose, CA},
    3862   author = {Mullikien, J.C. and Vliet, L.J. van and Netten, H. and Boddeke, F.R. and Feltz, G.W. van der and Young, I.T.}
    3863 }
    3864 @techreport{Verbeek1982,
    3865   year = {1982},
    3866   title = {Space Invariant Image Operations Constructed from Local Direction Detection and Shift Invariant Filters},
    3867   address = {Pattern Recognition Group},
    3868   institution = {Delft University of Technology},
    3869   author = {Verbeek, P.W.}
    3870 }
    3871 @inproceedings{Verbeek1986,
    3872   year = {1986},
    3873   title = {Collision Avoidance and Path Finding through Constrained Distance Transformation in Robot State Space},
    3874   booktitle = {Preprints Intelligent Autonomous Systems (Amsterdam, December 8-11)},
    3875   pages = {634--641},
    3876   author = {Verbeek, P.W. and Dorst, L. and Verwer, B.J.H. and Groen, F.C.A.}
    3877 }
    3878 @article{Verbeek1985,
    3879   year = {1985},
    3880   title = {A Class of Sampling-error Free Measures in Oversampled Band-Limited Images},
    3881   pages = {287--292},
    3882   journal = {Pattern Recognition Letters},
    3883   volume = {3},
    3884   author = {Verbeek, P.W.}
    3885 }
    3886 @article{Verbeek1988,
    3887   number = {3},
    3888   year = {1988},
    3889   title = {Low-level Image Processing by Max-Min Filters},
    3890   pages = {249--258},
    3891   journal = {Signal Processing},
    3892   volume = {15},
    3893   author = {Verbeek, P.W. and Vrooman, H.A. and Vliet, L.J. van}
    3894 }
    3895 @techreport{Verbeek2000,
    3896   year = {2000},
    3897   title = {Subspaces of Generalised Projection Operators},
    3898   address = {Pattern Recognition Group},
    3899   institution = {Delft University of Technology},
    3900   author = {Verbeek, P.W.}
    3901 }
    3902 @inproceedings{Verbeek2003,
    3903   series = {LNCS 2756},
    3904   month = {August 25-27},
    3905   year = {2003},
    3906   title = {The {D}-dimensional inverse vector-gradient operator and its application for scale free image enhancement},
    3907   booktitle = {10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands) },
    3908   pages = {738-745},
    3909   editor = {Petkov, N. and Westenberg, M.A.},
    3910   address = {Berlin},
    3911   publisher = {Springer},
    3912   author = {Verbeek, P.W. and Dijk, J.}
    3913 }
    3914 @article{Verbeek1989,
    3915   year = {1989},
    3916   title = {{2-D} Adaptive Smoothing by {3-D} Distance Transformation},
    3917   pages = {53--65},
    3918   journal = {Pattern Recognition Letters},
    3919   volume = {9},
    3920   author = {Verbeek, P.W. and Verwer, B.J.H.}
    3921 }
    3922 @article{Manders1996,
    3923   number = {1},
    3924   year = {1996},
    3925   title = {Largest contour segmentation: A tool for the localization of spots in confocal images},
    3926   pages = {15-21},
    3927   journal = {Cytometry Part A},
    3928   volume = {23},
    3929   author = {Manders, E.M.M. and Hoebe, R. and Strackee, J. and Vossepoel, A.M. and Aten, J.A.}
    3930 }
    3931 @phdthesis{Boomgaard1992,
    3932   year = {1992},
    3933   title = {Mathematical Morphology: Extensions Towards Computer Vision},
    3934   address = {Amsterdam},
    3935   school = {University of Amsterdam},
    3936   author = {Boomgaard, R. van den}
    3937 }
    3938 @article{Boomgaard1999,
    3939   year = {1999},
    3940   title = {Affine invariant deformation curves a tool for shape characterization},
    3941   pages = {375--380},
    3942   journal = {Image and Vision Computing},
    3943   volume = {17},
    3944   author = {Boomgaard, R. van den}
    3945 }
    3946 @article{Bos1992,
    3947   number = {1},
    3948   year = {1992},
    3949   title = {Ultimate resolution: a mathematical framework},
    3950   pages = {298-306},
    3951   journal = {Ultramicroscopy},
    3952   volume = {47},
    3953   author = {Bos, A. van den}
    3954 }
    3955 @article{Boomgaard1994,
    3956   number = {11},
    3957   year = {1994},
    3958   title = {The morphological structure of images: The differential equations of morphological scale-space},
    3959   pages = {1101--1113},
    3960   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3961   volume = {16},
    3962   author = {Boomgaard, R. van den and Smeulders, A.}
    3963 }
    3964 @article{Manders1993,
    3965   number = {3},
    3966   year = {1993},
    3967   title = {Measurement of co-localization of objects in dual-colour confocal images},
    3968   pages = {375-382},
    3969   journal = {Journal of Microscopy},
    3970   volume = {169},
    3971   author = {Manders, E.M.M. and Verbeek, F.J. and Aten, J.A.}
    3972 }
    3973 @misc{Dijkstra1982,
    3974   month = {August 11},
    3975   year = {1982},
    3976   title = {Why Numbering Should Start at Zero},
    3977   howpublished = {PDF file},
    3978   author = {Dijkstra, E.W.}
    3979 }
    3980 @misc{DelftXXXX,
    3981   title = {Magische Vierkanten},
    3982   howpublished = {uit ``Spelen met Puzzels''},
    3983   author = {Delft, P. van and Botermans,J.}
    3984 }
    3985 @article{Mayall1990,
    3986   number = {1},
    3987   year = {1990},
    3988   title = {Experience with the {Athena} Semi-Automated Karyotyping System},
    3989   pages = {59--72},
    3990   journal = {Cytometry},
    3991   volume = {11},
    3992   author = {Mayall, B.H. and Tucker, J.D. and Christensen, M.L. and Vliet, L.J. van and Young, I.T.}
    3993 }
    3994 @article{Schoenberg1930,
    3995   year = {1930},
    3996   title = {{\"Uber} Variationsvermindernde Lineare Transformationen},
    3997   pages = {321--328},
    3998   journal = {Mathematische Zeitschrift},
    3999   volume = {32},
    4000   author = {Schoenberg, I.}
    4001 }
    4002 @book{Rade1999,
    4003   edition = {4th},
    4004   year = {1999},
    4005   title = {Mathematical Handbook for Science and Engineering},
    4006   publisher = {Springer Verlag},
    4007   author = {{R\aa de}, L. and Westergren, B.}
    4008 }
    4009 @article{Blostein1989,
    4010   number = {12},
    4011   month = {December},
    4012   year = {1989},
    4013   title = {Shape from Texture: Integrating Texture-Element Extraction and Surface Estimation},
    4014   pages = {1233--1251},
    4015   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4016   volume = {11},
    4017   author = {Blostein, D. and Ahuja, N.}
    4018 }
    4019 @inproceedings{Hartley1992,
    4020   month = {15--18 June},
    4021   year = {1992},
    4022   title = {Stereo from Uncalibrated Cameras},
    4023   booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition - CVPR'92},
    4024   pages = {761--764},
    4025   address = {Urbana-Champaign, USA},
    4026   author = {Hartley, R. and Gupta, R. and Chang, T.}
    4027 }
    4028 @article{Patwardhan2002,
    4029   number = {1},
    4030   year = {2002},
    4031   title = {Coherent, non-planar illumination of a defocused specimen: consequences for transmission electron microscopy},
    4032   pages = {4-12},
    4033   journal = {Optik},
    4034   volume = {13},
    4035   author = {Patwardhan, A.}
    4036 }
    4037 @article{Kybic2002a,
    4038   number = {8},
    4039   year = {2002},
    4040   title = {Generalized sampling: A variational approach - Part {II}: Applications},
    4041   pages = {1977--1985},
    4042   journal = {IEEE Transactions on Signal Processing},
    4043   volume = {50},
    4044   author = {Kybic, J. and Blu, T. and Unser, M.}
    4045 }
    4046 @inproceedings{Cooper2003,
    4047   series = {LNCS 2749},
    4048   month = {June 29 -July 2},
    4049   year = {2003},
    4050   title = {Estimating Motion in Ultrasound Images of the Small Bowel: Optical Flow without Image Structure},
    4051   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    4052   pages = {571-578},
    4053   editor = {{Big\"un}, J. and Gustavsson, T.},
    4054   address = {Berlin},
    4055   publisher = {Springer-Verlag},
    4056   author = {Cooper, D.H. and Madsen, B.R. and Graham, J.}
    4057 }
    4058 @article{Weijer2001,
    4059   number = {9},
    4060   year = {2001},
    4061   title = {Curvature estimation in oriented patterns using curvilinear models applied to gradient vector fields},
    4062   pages = {1035 -1042},
    4063   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4064   volume = {23},
    4065   author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van}
    4066 }
    4067 @article{Weijer2005,
    4068   number = {4},
    4069   year = {2005},
    4070   title = {Edge and Corner Detection by Photometric Quasi-Invariants},
    4071   pages = {625-630},
    4072   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4073   volume = {27},
    4074   author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van }
    4075 }
    4076 @article{Unsalan2001,
    4077   number = {1},
    4078   year = {2001},
    4079   title = {Conversions between Parametric and Implicit Forms Using Polar/Spherical Coordinate Representations},
    4080   pages = {1--25},
    4081   journal = {Computer Vision and Image Understanding},
    4082   volume = {81},
    4083   author = {{\"Unsalan}, C. and {Er\c{c}il}, A.}
    4084 }
    4085 @article{Aguado2000a,
    4086   number = {1995},
    4087   year = {2000},
    4088   title = {On the Intimate Relationship between the Principle of Duality and the {Hough} Transform},
    4089   pages = {503--526},
    4090   journal = {Proceedings of the Royal Society London A},
    4091   volume = {456},
    4092   author = {Aguado, A.S. and Montiel, E. and Nixon, M.S.}
    4093 }
    4094 @article{Unser1999,
    4095   month = {November},
    4096   year = {1999},
    4097   title = {Splines: A Perfect Fit for Signal and Image Processing},
    4098   pages = {22--38},
    4099   journal = {IEEE Signal Processing Magazine},
    4100   author = {Unser, Michael}
    4101 }
    4102 @article{Haussecker2001,
    4103   number = {6},
    4104   month = {June},
    4105   year = {2001},
    4106   title = {Computing Optical Flow with Physical Models of Brightness Variation},
    4107   pages = {661--673},
    4108   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4109   volume = {23},
    4110   author = {Haussecker, H.W. and Fleet, D.J.}
    4111 }
    4112 @article{Unser1995,
    4113   number = {10},
    4114   year = {1995},
    4115   title = {Convolution-based interpolation for fast, high-quality rotation of images},
    4116   pages = {1371-1381},
    4117   journal = {IEEE Transactions on Image Processing},
    4118   volume = {4},
    4119   author = {Unser, M. and Thevenaz, P. and Yaroslavsky, L.}
    4120 }
    4121 @article{Duncan1991,
    4122   number = {3},
    4123   year = {1991},
    4124   title = {A bending energy model for measurement of cardiac shape deformaty},
    4125   pages = {307--319},
    4126   journal = {IEEE Transactions on Medical Imaging},
    4127   volume = {10},
    4128   author = {Duncan, J.S. and Lee, F.A. and Smeulders, A.W.M. and Zaret, B.L.}
    4129 }
    4130 @article{Unser1991,
    4131   number = {3},
    4132   month = {March},
    4133   year = {1991},
    4134   title = {Fast {B}-Spline Transform for Continuous Image Representation and Interpolation},
    4135   pages = {277--285},
    4136   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4137   volume = {13},
    4138   author = {Unser, M. and Aldroubi, A. and Eden, M.}
    4139 }
    4140 @article{Whitaker1993,
    4141   number = {1},
    4142   month = {January},
    4143   year = {1993},
    4144   title = {A Multi-Scale Approach to Nonuniform Diffusion},
    4145   pages = {99--110},
    4146   journal = {CVGIP Image Understanding},
    4147   volume = {57},
    4148   author = {Whitaker, R.T. and Pizer, S.M.}
    4149 }
    4150 @article{Unser1993,
    4151   number = {2},
    4152   month = {February},
    4153   year = {1993},
    4154   title = {{B}-Spline Signal Processing: Part {I} - Theory},
    4155   pages = {821--833},
    4156   journal = {IEEE Transactions on Signal Processing},
    4157   volume = {41},
    4158   author = {Unser, Michael and Aldroubi, Akram and Eden, Murray}
    4159 }
    4160 @article{Vries2004,
    4161   number = {4},
    4162   year = {2004},
    4163   title = {Patterned Electroplating of Micrometer Scale Magnetic Structures on Glass Substrates},
    4164   pages = {391-395},
    4165   journal = {Journal of Microelectromechanical Systems},
    4166   volume = {13},
    4167   author = {Vries, A.H.B. de and Kanger, J.S. and Krenn, B.E. and Driel, R. van}
    4168 }
    4169 @article{Vries2005,
    4170   number = {3},
    4171   year = {2005},
    4172   title = {Micro Magnetic Tweezers for Nanomanipulation Inside Live Cells},
    4173   pages = {2137-2144},
    4174   journal = {Biophysical Journal},
    4175   volume = {88},
    4176   author = {Vries, A.H.B. de and Krenn, B.E. and Driel, R. van and Kanger, J.S.}
    4177 }
    4178 @article{Sheppard1988,
    4179   number = {2},
    4180   year = {1988},
    4181   title = {Super-resolution in confocal microscopy},
    4182   pages = {53-54},
    4183   journal = {Optik},
    4184   volume = {80},
    4185   author = {Sheppard, C.J.R.}
    4186 }
    4187 @article{Kippenberg2011,
    4188   year = {2011},
    4189   title = {Microresonator-Based Optical Frequency Combs},
    4190   pages = {555-560},
    4191   journal = {Science},
    4192   volume = {332},
    4193   author = {Kippenberg, T.J. and Holzwarth, R. and Diddams, S.A.}
    4194 }
    4195 @misc{DIPlib,
    4196   year = {1995-},
    4197   title = {{DIPlib}: a scientific image processing library},
    4198   note = {Pattern Recognition Group, Department of Applied Physics, Delft University of Technology, {\tt http://www.qi.tnw.tudelft.nl/DIPlib}},
    4199   author = {Ginkel, M. van and Kempen, G.M.P. van and Luengo Hendriks, C.L. and Rieger, B. and Vliet, L.J. van}
    4200 }
    4201 @article{Michielsen2000,
    4202   year = {2000},
    4203   title = {Morphological Image Analysis},
    4204   pages = {94--103},
    4205   journal = {Computer Physics Communications},
    4206   volume = {132},
    4207   author = {Michielsen, K. and De Raedt, H.}
    4208 }
    4209 @article{Heertje1997,
    4210   number = {2},
    4211   year = {1997},
    4212   title = {Vet Zonder Vet},
    4213   pages = {30--40},
    4214   journal = {Natuur en Techniek},
    4215   volume = {65},
    4216   author = {Heertje, I.}
    4217 }
    4218 @inproceedings{Tomasi1998a,
    4219   month = {January 4-7},
    4220   year = {1988},
    4221   title = {Bilateral Filtering for Gray and Color Images},
    4222   booktitle = { Proceedings of the Sixth International Conference on Computer Vision, ICCV'98 (Bombay, India)},
    4223   pages = {836-846},
    4224   publisher = {Narosa Publishing House},
    4225   author = {Tomasi, C. and Manduchi, R.}
    4226 }
    4227 @book{Jain1989,
    4228   year = {1989},
    4229   title = {Fundamentals of Digital Image Processing},
    4230   publisher = {Prentice-Hall},
    4231   author = {Jain, A.K.}
    4232 }
    4233 @article{Thompson2002,
    4234   year = {2002},
    4235   title = {Precise Nanometer Localization Analysis for Individual Fluorescent Probes},
    4236   pages = {2775-2783},
    4237   journal = {Biophysical Journal},
    4238   volume = {82},
    4239   author = {Thompson, R.E. and Larson, D.R. and Webb, W.W.}
    4240 }
    4241 @techreport{Pizer1990,
    4242   year = {1990},
    4243   title = {Toward Interactive Object Definition in 3D Scalar Images},
    4244   note = {TR90-034},
    4245   institution = {University of North Carolina, U.S.A.},
    4246   author = {Pizer, S.M. and Cullip, T.J. and Fredericksen, R.E.}
    4247 }
    4248 @article{Taton2001,
    4249   year = {2001},
    4250   title = {Two-color labeling of oligonucleotide arrays via size-selctive scattering of nanoparticles},
    4251   pages = {5164-5165},
    4252   journal = {Journal of the American Chemical Society},
    4253   volume = {123},
    4254   author = {Taton, T.A. and Mirkin, C.A. and Lestinger, R.L.}
    4255 }
    4256 @article{Orr1993,
    4257   number = {1},
    4258   month = {January},
    4259   year = {1993},
    4260   title = {The Order of Computation for Finite Discrete Gabor Transforms},
    4261   pages = {122--130},
    4262   journal = {IEEE Transactions on Signal Processing},
    4263   volume = {41},
    4264   author = {Orr, R.S.}
    4265 }
    4266 @article{Marfurt1998,
    4267   number = {4},
    4268   month = {July-August},
    4269   year = {1998},
    4270   title = {3-D Seismic Attributes using a Semblance-based coherency algorithm},
    4271   pages = {1150--1165},
    4272   journal = {Geophysics},
    4273   volume = {63},
    4274   author = {Marfurt, K.J. and Kirlin, R.L. and Farmer, S.L. and Bahorich, M.S.}
    4275 }
    4276 @inproceedings{Witkin1983,
    4277   month = {October},
    4278   year = {1983},
    4279   title = {Scale Space Filtering},
    4280   booktitle = {Proceedings of the International Conference on Artificial Intelligence},
    4281   pages = {1019--1023},
    4282   address = {Karlsruhe, Germany},
    4283   author = {Witkin, A.}
    4284 }
    4285 @article{Doel2001,
    4286   number = {25},
    4287   year = {2001},
    4288   title = {Temporal phase unwrapping algorithm for dynamic interference pattern analysis in interference-contrast microscopy},
    4289   pages = {4487--4500},
    4290   journal = {Applied Optics},
    4291   volume = {40},
    4292   author = {Doel, L.R. van den and Vliet, L.J. van}
    4293 }
    4294 @inproceedings{Zucker1999,
    4295   month = {June 7-11},
    4296   year = {1999},
    4297   title = {Complexity and Confusion in Computational Vision},
    4298   booktitle = {SCIA'99 the 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland)},
    4299   pages = {1--10},
    4300   author = {Zucker, S.W.}
    4301 }
    4302 @article{HelOr1998,
    4303   year = {1998},
    4304   title = {Canonical Decomposition of Steerable Functions},
    4305   pages = {83--95},
    4306   journal = {Journal of Mathematical Imaging and Vision},
    4307   volume = {9},
    4308   author = {Hel-Or, Y. and Teo, P.C.}
    4309 }
    4310 @phdthesis{Doel2002,
    4311   year = {2002},
    4312   title = {Quantitative Microscopic Techniques for Monitoring Dynamic Processes in Microarrays},
    4313   address = {Delft, The Netherlands},
    4314   school = {Delft University of Technology},
    4315   author = {Doel, L.R. van den}
    4316 }
    4317 @article{Fredrich1997,
    4318   number = {3-4},
    4319   year = {1997},
    4320   title = {Statistical Characterization of the Three-dimensional Microgeometry of Porous Media and Correlation with Macroscopic Transport Properties},
    4321   pages = {Paper No. 85},
    4322   journal = {Int. J. Roch Mech. \& Min. Sci.},
    4323   volume = {34},
    4324   author = {Fredrich, J.T. and Lindquist, W.B.}
    4325 }
    4326 @article{Fredrich1999,
    4327   number = {7},
    4328   year = {1999},
    4329   title = {3D Imaging of Porous Media using Laser Scanning Confocal Microscopy with Application to Microscale Transport Processes},
    4330   pages = {551--561},
    4331   journal = {Physics and Chemistry of the Earth (A)},
    4332   volume = {24},
    4333   author = {Fredrich, J.T.}
    4334 }
    4335 @book{Duda2001,
    4336   edition = {second},
    4337   year = {2001},
    4338   title = {Pattern Classification},
    4339   publisher = {John Wiley \& Sons},
    4340   author = {Duda, R.O. and Hart, P.E. and Stork, D.G.}
    4341 }
    4342 @article{Fredrich1995,
    4343   month = {April},
    4344   year = {1995},
    4345   title = {Imaging the Pore Structure of Geomaterials},
    4346   pages = {276--279},
    4347   journal = {Science},
    4348   volume = {268},
    4349   author = {Fredrich, J.T. and {Men\'endez}, B. and Wong, T.F.}
    4350 }
    4351 @article{Whitehouse1974a,
    4352   year = {1974},
    4353   title = {Scanning Electron Microscope Studies of Trabecular Bone in the Proximal End of the Human Femur},
    4354   pages = {417--444},
    4355   journal = {J. Anatomy},
    4356   volume = {118},
    4357   author = {Whitehouse, W.J. and Dyson, E.D.}
    4358 }
    4359 @inproceedings{Beucher1982,
    4360   year = {1982},
    4361   title = {Watersheds of Functions and Picture Segmentation},
    4362   booktitle = {IEEE International Conference on Acoustics, Speech, and Signal Processing},
    4363   pages = {1928-1931},
    4364   author = {Beucher, S.}
    4365 }
    4366 @article{Booth2000,
    4367   number = {1},
    4368   year = {2000},
    4369   title = {Strategies for the compensation of specimen-induced spherical aberration in confocal microscopy of skin},
    4370   pages = {68-74},
    4371   journal = {Journal of Microscopy},
    4372   volume = {200},
    4373   author = {Booth, M.J. and Wilson, T.}
    4374 }
    4375 @article{Redon1998,
    4376   month = {September},
    4377   year = {1998},
    4378   title = {Assessment of Fibre Orientation in Reinforced Concrete using {Fourier} Image Transform},
    4379   pages = {258--265},
    4380   journal = {Journal of Microscopy},
    4381   volume = {191 Pt 3},
    4382   author = {Redon, C. and Chermant, L. and Chermant, J.-L. and Coster, M.}
    4383 }
    4384 @article{Booth2004,
    4385   year = {2004},
    4386   title = {A 9 single particle reconstruction from {CCD} captured images on a 200 {kV} electron cryomicroscope},
    4387   pages = {116-127},
    4388   journal = {Journal of Structural Biology},
    4389   volume = {147},
    4390   author = {Booth, C.R. and Jiang, W. and Baker, M.L. and Zhou, Z.H. and Ludtke, S.J. and Chiu, W.}
    4391 }
    4392 @article{Booth2002,
    4393   number = {9},
    4394   year = {2002},
    4395   title = {Adaptive aberration correction in a confocal microscope},
    4396   pages = {5788-5792},
    4397   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    4398   volume = {99},
    4399   author = {Booth, M.J. and Neil, M.A.A. and Juskaitis, R. and Wilson, T.}
    4400 }
    4401 @article{Jakobsen2000,
    4402   number = {6},
    4403   month = {November/December},
    4404   year = {2000},
    4405   title = {Anisotropic approximations for mudrocks: a seismic laboratory study},
    4406   pages = {1711--1725},
    4407   journal = {Geophysics},
    4408   volume = {65},
    4409   author = {Jakobsen, M. and Johansen, T.A.}
    4410 }
    4411 @article{Kiryati1991a,
    4412   number = {6},
    4413   month = {June},
    4414   year = {1991},
    4415   title = {On Navigating between Friends and Foes},
    4416   pages = {602--606},
    4417   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4418   volume = {13},
    4419   annote = {key_radon},
    4420   author = {Kiryati, N. and Bruckstein, A.M.}
    4421 }
    4422 @article{Gustafsson1999,
    4423   number = {1},
    4424   year = {1999},
    4425   title = {{I$^5$M}: {3D} widefield light microscopy with better than 100 nm axial resolution},
    4426   pages = {10-16},
    4427   journal = {Journal of Microscopy},
    4428   volume = {195},
    4429   author = {Gustafsson, M.G.L. and Agard, D.A. and Sedat, J.W.}
    4430 }
    4431 @book{Lovell1999,
    4432   year = {1999},
    4433   title = {Borehole imaging: Applications and case histories, Geological Society special publication, no. 159},
    4434   publisher = {Geological Society, London},
    4435   author = {Lovell, M. and Williamson, G. and Harvey, P.}
    4436 }
    4437 @article{Faydi2001a,
    4438   year = {2001},
    4439   title = {Experimental Study and Modeling of the Ice Crystal Morphology of Model Standard Ice Cream. Part {II}: Heat Transfer Data and Texture Modeling},
    4440   pages = {293--300},
    4441   journal = {Journal of Food Engineering},
    4442   volume = {48},
    4443   author = {Faydi, E. and Andrieu, J. and Laurent, P. and Peczalski, R.}
    4444 }
    4445 @article{Kitchen1982,
    4446   number = {2},
    4447   year = {1982},
    4448   title = {Gray-Level Corner Detection},
    4449   pages = {95--102},
    4450   journal = {Pattern Recognition Letters},
    4451   volume = {1},
    4452   author = {Kitchen, L. and Rosenfeld, A.}
    4453 }
    4454 @inbook{Digabel1978,
    4455   year = {1978},
    4456   title = {Quantitative Analysis of Microstructures in Materials Sciences, Biology and Medicine},
    4457   pages = {85-99},
    4458   editor = {Chermant, J. L.},
    4459   address = {Stuttgart},
    4460   chapter = {Iterative Algorithms},
    4461   publisher = {Dr. Rieder-Verlag},
    4462   author = {Digabel, H. and {Lantu\'ejoul}, C.}
    4463 }
    4464 @article{Leung2000,
    4465   number = {12},
    4466   month = {December},
    4467   year = {2000},
    4468   title = {Clustering by Scale-space Filtering},
    4469   pages = {1396--1410},
    4470   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4471   volume = {22},
    4472   author = {Leung, Y. and Zhang, J.S. and Xu, Z.B.}
    4473 }
    4474 @article{Tomasi1998,
    4475   number = {3},
    4476   month = {March},
    4477   year = {1998},
    4478   title = {Stereo Matching as a Nearest-Neighbor Problem},
    4479   pages = {333--340},
    4480   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4481   volume = {20},
    4482   author = {Tomasi, C. and Manduchi, R.}
    4483 }
    4484 @article{Shi1996,
    4485   number = {2},
    4486   year = {1996},
    4487   title = {Statistical mechanics of the extensible and shearable elastic rod and of {DNA}},
    4488   pages = {714-731},
    4489   journal = {The Journal of Chemical Physics},
    4490   volume = {105},
    4491   author = {Shi, Y. and He, S. and Hearst, J.E.}
    4492 }
    4493 @article{Schwertner2004,
    4494   number = {26},
    4495   year = {2004},
    4496   title = {Characterizing specimen induced aberrations for high NA adaptive optical microscopy},
    4497   pages = {6540-6552},
    4498   journal = {Optics Express},
    4499   volume = {12},
    4500   author = {Schwertner, M. and Booth, M.J. and Wilson, T.}
    4501 }
    4502 @article{Ville1948,
    4503   number = {1},
    4504   year = {1948},
    4505   title = {{Th\'eorie} et Applications de la Notion de Signal Analytique},
    4506   pages = {61--74},
    4507   journal = {Cables et Transmission},
    4508   volume = {{2A}},
    4509   author = {Ville, J.}
    4510 }
    4511 @article{Good1958,
    4512   year = {1958},
    4513   title = {The Interaction Algorithm and Practical {Fourier} Analysis},
    4514   pages = {361--372},
    4515   note = {Addendum in vol B. 22, 1960, pp. 372-375},
    4516   journal = {J. Roy. Statist. Soc. Ser. B},
    4517   volume = {B. 20},
    4518   annote = {key_fft},
    4519   author = {Good, I.J.}
    4520 }
    4521 @article{Digman2005a,
    4522   year = {2005},
    4523   title = {Measuring Fast Dynamics in Solutions and Cells with a Laser Scanning Microscope},
    4524   pages = {1317-1327},
    4525   journal = {Biophysical Journal},
    4526   volume = {89},
    4527   author = {Digman, M.A. and Brown, C.M. and Sengupta, P. and Wiseman, P.W. and Howritz, A.R. and Grattown, E.}
    4528 }
    4529 @article{Kiryati1992,
    4530   number = {4},
    4531   month = {April},
    4532   year = {1992},
    4533   title = {What 's in a Set of Points?},
    4534   pages = {496--500},
    4535   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4536   volume = {14},
    4537   annote = {key_radon},
    4538   author = {Kiryati, N. and Bruckstein, A.M.}
    4539 }
    4540 @inbook{Rosenfeld1969_Hough,
    4541   year = {1969},
    4542   title = {Picture Processing by Computer},
    4543   pages = {151--153},
    4544   note = {Section 8.4.e. Coordinate Conversion},
    4545   chapter = {8. Picture Segmentation},
    4546   publisher = {Academic Press},
    4547   author = {Rosenfeld, A.}
    4548 }
    4549 @article{Kiryati1991,
    4550   number = {3},
    4551   month = {May},
    4552   year = {1991},
    4553   title = {Antialiasing the {H}ough transform},
    4554   pages = {213--222},
    4555   journal = {CVGIP: Graphical Models and Image Processing},
    4556   volume = {53},
    4557   annote = {key_radon},
    4558   author = {Kiryati, N. and Bruckstein, A.M.}
    4559 }
    4560 @article{Randen1999,
    4561   number = {4},
    4562   month = {April},
    4563   year = {1999},
    4564   title = {Filtering for Texture Classification: A Comparative Study},
    4565   pages = {291--310},
    4566   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4567   volume = {21},
    4568   author = {Randen, T. and {Hus\oe y}, H.}
    4569 }
    4570 @article{Birk1979,
    4571   number = {2},
    4572   month = {April},
    4573   year = {1979},
    4574   title = {Image Feature Extraction Using Diameter-Limited Gradient Direction Histograms},
    4575   pages = {228--235},
    4576   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4577   volume = {1},
    4578   author = {Birk, J. and Kelley, R. and Chen, N. and Wilson, L.}
    4579 }
    4580 @article{Betzig2006,
    4581   year = {2006},
    4582   title = {Imaging Intracellular Fluorescent Proteins at Nanometer Resolution},
    4583   pages = {1643-1645},
    4584   journal = {Science},
    4585   volume = {313},
    4586   author = {Betzig, E. and Patterson, G.H. and Sougrat, R. and Lindwasser, O.W. and Olenych, S. and Bonifacino, J.S. and Davidson, M.W. and Lippincott-Schwartz, J. and Hess, H.F.}
    4587 }
    4588 @article{Lopez2000,
    4589   year = {2000},
    4590   title = {Multilocal Creaseness Based on the Level-Set Extrinsic Curvature},
    4591   pages = {111--144},
    4592   journal = {Computer Vision and Image Understanding},
    4593   volume = {77},
    4594   author = {{L\'opez}, A.M. and Lloret, D. and Serrat, J. and Villanueva, J.J.}
    4595 }
    4596 @book{Stoker1969,
    4597   year = {1969},
    4598   title = {Differential Geometry},
    4599   publisher = {John Wiley and Sons, Inc},
    4600   author = {Stoker, J.J.}
    4601 }
    4602 @article{Robinson2004a,
    4603   number = {9},
    4604   year = {2004},
    4605   title = {Fundamental performance limits in image registration},
    4606   pages = {1185-1199},
    4607   journal = {IEEE Transactions on Image Processing},
    4608   volume = {13},
    4609   author = {Robinson, M.D. and Milanfar, P.}
    4610 }
    4611 @article{Frontali1988,
    4612   number = {8},
    4613   year = {1988},
    4614   title = {Excluded-volume effect on the bidimensional conformation of {DNA} molecules adsorbed to protein films},
    4615   pages = {1329-1331},
    4616   journal = {Biopolymers},
    4617   volume = {27},
    4618   author = {Frontali, C.}
    4619 }
    4620 @article{Veen1981,
    4621   year = {1981},
    4622   title = {Discretization Error in the {H}ough transform},
    4623   pages = {137--145},
    4624   journal = {Pattern Recognition},
    4625   volume = {14},
    4626   annote = {key_radon},
    4627   author = {Veen, T.M. van and Groen, F.C.A.}
    4628 }
    4629 @article{Eberly1991a,
    4630   number = {6},
    4631   month = {November},
    4632   year = {1991},
    4633   title = {On Gray Scale Image Measurements. {II}. Surface Area and Volume},
    4634   pages = {550--562},
    4635   journal = {CVGIP: Graphical Models and Image Processing},
    4636   volume = {53},
    4637   author = {Eberly, D. and Lancaster, J. and Alyassin, A.}
    4638 }
    4639 @article{Stowell1998,
    4640   year = {1998},
    4641   title = {Macromolecular structure determination by electron microscopy: new advances and recent results},
    4642   pages = {595-600},
    4643   journal = {Current Opinion Structural Biology},
    4644   volume = {8},
    4645   author = {Stowell, M.H.B. and Miyazawa, A. and Unwin, N.}
    4646 }
    4647 @article{Yang1997,
    4648   number = {2},
    4649   month = {March},
    4650   year = {1997},
    4651   title = {Fast Computation of Three-Dimensional Geometric Moments Using a Discrete Divergence Theorem and a Generalization to Higher Dimensions},
    4652   pages = {97--108},
    4653   journal = {Graphical Models and Image Processing},
    4654   volume = {59},
    4655   author = {Yang, L. and Albregtsen, F. and Taxt, T.}
    4656 }
    4657 @article{Jovin2003,
    4658   year = {2003},
    4659   title = {Quantum dots finally come of age},
    4660   pages = {32-33},
    4661   journal = {Nature Biotechnology},
    4662   volume = {21},
    4663   author = {Jovin, T.M.}
    4664 }
    4665 @article{Ioannidis2000,
    4666   year = {2000},
    4667   title = {On the Geometry and Topology of 3D Stochastic Porous Media},
    4668   pages = {323--334},
    4669   journal = {Journal of Colloid and Interface Science},
    4670   volume = {229},
    4671   author = {Ioannidis, M.A. and Chatzis, I.}
    4672 }
    4673 @article{Srinivasa1996,
    4674   number = {8},
    4675   year = {1996},
    4676   title = {A FFT-based technique for translation, rotation and scale-invariant image registration},
    4677   pages = {1266-1271},
    4678   journal = {IEEE Transactions on Image Processing},
    4679   volume = {5},
    4680   author = {Srinivasa Reddy, B. and Chatterji, B.N.}
    4681 }
    4682 @article{Zheng1995,
    4683   year = {1995},
    4684   title = {Automatic feature point extraction and tracking in image sequences for arbitrary camera motion},
    4685   pages = {31--76},
    4686   journal = {International Journal of Computer Vision},
    4687   volume = {15},
    4688   author = {Zheng, Q. and Chellappa, R.}
    4689 }
    4690 @article{Mattfeldt1993,
    4691   month = {August},
    4692   year = {1993},
    4693   title = {Second-order Stereology of Benign and Malignant Alterations of the Human Mammary Gland},
    4694   pages = {143--151},
    4695   journal = {Journal of Microscopy},
    4696   volume = {171, Pr 2},
    4697   author = {Mattfeldt, T. and Frey, H. and Rose, C.}
    4698 }
    4699 @book{Campbell2001a,
    4700   year = {2001},
    4701   title = {Exploring the Nanoworld with {LEGO} bricks},
    4702   editor = {Campbell, D.J.}
    4703 }
    4704 @article{Murk2003,
    4705   number = {23},
    4706   year = {2003},
    4707   title = {Endosomal compartmentalization in three dimensions: Implications for membrane fusion},
    4708   pages = {13332-13337},
    4709   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    4710   volume = {100},
    4711   author = {Murk, J.L.A.N. and Humbel, B.M. and Ziese, U. and Griffith, J.M. and Posthuma, G. and Slot, J.W. and Koster, A.J. and Verkleij, A.J. and Geuze, H.J. and Kleijmeer, M.J.}
    4712 }
    4713 @article{Chiuso2002,
    4714   number = {4},
    4715   year = {2002},
    4716   title = {Structure from motion causally integrated over time},
    4717   pages = {523--535},
    4718   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4719   volume = {24},
    4720   author = {Chiuso, A. and Favaro, P. and Hailin Jin and Soatto, S. }
    4721 }
    4722 @misc{Atherton1993,
    4723   year = {1993},
    4724   title = {Using Phase to Represent Radius in the Coherent Circle {Hough} Transform},
    4725   howpublished = {IEE Colloquium on {Hough} Transforms},
    4726   author = {Atherton, T.J. and Kerbyson, D.J.}
    4727 }
    4728 @article{Lidke2005a,
    4729   year = {2005},
    4730   title = {Reaching out for signals: filopodia sense {EGF} and respond by directed retrograde transport of activated receptors},
    4731   pages = {619-626},
    4732   journal = {Journal of Cell Biology},
    4733   volume = {170},
    4734   author = {Lidke, D.S. and Lidke, K.A. and Rieger, B. and Jovin, T.M. and Arndt-Jovin, D.J.}
    4735 }
    4736 @article{Squire2000,
    4737   number = {3},
    4738   year = {2000},
    4739   title = { Invariant Signatures: Characterizing Contours by their Departures from Invariance},
    4740   pages = {284--316},
    4741   journal = {Computer Vision and Image Understanding},
    4742   volume = {77},
    4743   author = {Squire, D. and Caelli, T.}
    4744 }
    4745 @article{Lidke2005b,
    4746   number = {18},
    4747   year = {2005},
    4748   title = {Superresolution by localization of quantum dots using blinking statistics},
    4749   pages = {7052-7062},
    4750   journal = {Optics Express},
    4751   volume = {13},
    4752   author = {Lidke, K.A. and Rieger, B. and Jovin, T.M. and Heintzmann, R.}
    4753 }
    4754 @article{Rosenfeld1968,
    4755   number = {1},
    4756   month = {july},
    4757   year = {1968},
    4758   title = {Distance functions on digital pictures},
    4759   pages = {33-61},
    4760   journal = {Pattern Recognition},
    4761   volume = {1},
    4762   author = {Rosenfeld, A. and Pfaltz, J.L.}
    4763 }
    4764 @article{Garini1999,
    4765   number = {3},
    4766   year = {1999},
    4767   title = {Signal to Noise Analysis of Multiple Color Fluorescence Imaging Microscopy},
    4768   pages = {214-226},
    4769   journal = {Cytometry},
    4770   volume = {35},
    4771   author = {Garini, Y. and Bar-Am, G.I. and Cabib, D. and Katzir, N.}
    4772 }
    4773 @article{Yuen1997,
    4774   number = {6},
    4775   year = {1997},
    4776   title = {An Investigation of the Nature of Parameterization for the {Hough} Transform},
    4777   pages = {1009--1040},
    4778   journal = {Pattern Recognition},
    4779   volume = {30},
    4780   author = {Yuen, S.Y. and Ma, C.H.}
    4781 }
    4782 @inproceedings{Niessen1994,
    4783   year = {1994},
    4784   title = {Nonlinear Diffusion of Scalar Images using Well-Posed Differential Operators},
    4785   booktitle = {CVPR'94 (Seattle, U.S.A.)},
    4786   pages = {92--97},
    4787   author = {Niessen, W.J. and Haar Romeny, B.M. ter and Florack, L.M.J. and Salden, A.H. and Viergever, M.A.}
    4788 }
    4789 @book{Rosenfeld1969,
    4790   year = {1969},
    4791   title = {Picture Processing by Computer},
    4792   publisher = {Academic Press},
    4793   author = {Rosenfeld, A.}
    4794 }
    4795 @article{Besl1992,
    4796   number = {2},
    4797   year = {1992},
    4798   title = {A method for registration of {3-D} shapes},
    4799   pages = {239-256},
    4800   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4801   volume = {14},
    4802   author = {Besl, P.J. and McKay, N.D.}
    4803 }
    4804 @article{Neher2004a,
    4805   number = {1},
    4806   year = {2004},
    4807   title = {Optimizing imaging parameters for the separation of multiple labels in a fluorescence image},
    4808   pages = {46-62},
    4809   journal = {Journal of Microscopy},
    4810   volume = {213},
    4811   author = {Neher, R.A. and Neher, E.}
    4812 }
    4813 @article{Kempen1997,
    4814   number = {3},
    4815   year = {1997},
    4816   title = {A Quantitative Comparison of Image Restoration Methods for Confocal Microscopy},
    4817   pages = {354--365},
    4818   journal = {Journal of Microscopy},
    4819   volume = {185},
    4820   author = {Kempen, G.M.P. van and Vliet, L.J. van and Verveer, P.J. and Voort, H.T.M. van der}
    4821 }
    4822 @article{Walters1987,
    4823   year = {1987},
    4824   title = {Selection of Image Primitives for General-Purpose Visual Processing},
    4825   pages = {261--298},
    4826   journal = {Computer Vision, Graphics, and Image Processing},
    4827   volume = {37},
    4828   author = {Walters, D.}
    4829 }
    4830 @article{Heintzmann2001,
    4831   year = {2001},
    4832   title = {A dual path programmable array microscope ({PAM}): simultaneous acquisition of conjugate and non-conjugate images},
    4833   pages = {119-135},
    4834   journal = {Journal of Microscopy},
    4835   volume = {204},
    4836   author = {Heintzmann, R. and Hanley, Q.S. and Ardent-Jovin, D.J. and Jovin, T.M.}
    4837 }
    4838 @inproceedings{Kempen1999,
    4839   month = {June 7-11},
    4840   year = {1999},
    4841   title = {The Application of a Local Dimensionality Estimator to the Analysis of 3D Microscopic Network Structures},
    4842   booktitle = {SCIA'99, Proc. 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland)},
    4843   pages = {447--455},
    4844   author = {Kempen, G.M.P. van and Brink, N. van den and Vliet, L.J. van and Ginkel, M. van and Verbeek, P.W.}
    4845 }
    4846 @manual{Ieee1985,
    4847   year = {1985},
    4848   title = {{IEEE} Standard for Binary Floating-Point Arithmetic},
    4849   note = {Std. 754-1985},
    4850   address = {Standards Committee of the {IEEE} Computer Society},
    4851   author = {IEEE}
    4852 }
    4853 @article{Cairney2001,
    4854   month = {February},
    4855   year = {2001},
    4856   title = {Microstructural Analysis of a FeAl/quasicrystal-based composite prepared using a focused ion beam miller},
    4857   pages = {201--211},
    4858   journal = {Journal of Microscopy},
    4859   volume = {201, Pt 2},
    4860   author = {Cairney, J.M. and Munroe, P.R. and Sordelet, D.J.}
    4861 }
    4862 @article{Chen1994,
    4863   number = {9},
    4864   year = {1994},
    4865   title = {Segmentation and Association Among Lines and Junctions for a Line Image},
    4866   pages = {1135--1157},
    4867   journal = {Pattern Recognition},
    4868   volume = {27},
    4869   author = {Chen, Y.S.}
    4870 }
    4871 @inproceedings{Hurley1999,
    4872   year = {1999},
    4873   title = {Force Field Energy Functionals for Image Feature Extraction},
    4874   booktitle = {10th British Machine Vision Conference},
    4875   pages = {604--613},
    4876   editor = {Pridmore, T. and Elliman, D.},
    4877   volume = {2},
    4878   author = {Hurley, D.J. and Nixon, M.S. and Carter, J.N.}
    4879 }
    4880 @book{Kay1993,
    4881   year = {1993},
    4882   title = {Fundamentals of Statistical Processing: Estimation Theory},
    4883   address = {New Jersey},
    4884   publisher = {Prentice Hall},
    4885   author = {Kay, S.M.}
    4886 }
    4887 @article{Chen1993,
    4888   number = {6},
    4889   year = {1993},
    4890   title = {An Improved Line Continuation Model in Human Visual Perception},
    4891   pages = {825--842},
    4892   journal = {Pattern Recognition},
    4893   volume = {26},
    4894   author = {Chen,Y.S. and Chang, S.L. and Hsu, W.H.}
    4895 }
    4896 @article{Goldberg1991,
    4897   number = {1},
    4898   year = {1991},
    4899   title = {What Every Computer Scientist Should Know about Floating-Point Arithmetic},
    4900   pages = {5--48},
    4901   journal = {ACM Computing Surveys},
    4902   volume = {23},
    4903   author = {Goldberg, D.}
    4904 }
    4905 @article{Mancini2000,
    4906   year = {2000},
    4907   title = {Supplanting crystallography or supplementing microscopy? A combined approach to the study of an enveloped virus},
    4908   pages = {1278-1287},
    4909   journal = {Acta Crystallographica Section D},
    4910   volume = {56},
    4911   author = {Mancini, E.J. and Fuller, S.D.}
    4912 }
    4913 @inproceedings{Aguado1997,
    4914   month = {12--15 October},
    4915   year = {1997},
    4916   title = {Arbitrary Shape {Hough} Transform by Invariant Geometric Features},
    4917   booktitle = {International Conference on Systems, Man and Cybernetics},
    4918   pages = {2661--2665},
    4919   volume = {3},
    4920   author = {Aguado, A.S. and Montiel, M.E. and Nixon, M.S.},
    4921   organization = {IEEE}
    4922 }
    4923 @inproceedings{Granlund1997,
    4924   series = {Lecture Notes on Computer Science},
    4925   year = {1997},
    4926   title = {From Multidimensional Signals to the Generation of Responses},
    4927   booktitle = {Algebraic Frames for the Perception-Action Cycle (AFPAC 1997)},
    4928   editor = {Sommer, G. and Koenderink, J.J.},
    4929   volume = {1315},
    4930   address = {Kiel, Germany},
    4931   publisher = {Springer-Verlag},
    4932   author = {Granlund, G.H.}
    4933 }
    4934 @article{Smit1998,
    4935   number = {3},
    4936   month = {September},
    4937   year = {1998},
    4938   title = {Star Length Distribution: a Volume-Based Concept for the Characterization of Structural Anisotropy},
    4939   pages = {249--257},
    4940   journal = {Journal of Microscopy},
    4941   volume = {191},
    4942   author = {Smit, Th.H. and Schneider, E. and Odgaard, A.}
    4943 }
    4944 @book{Granlund1995,
    4945   year = {1995},
    4946   title = {Signal processing for computer vision},
    4947   address = {Boston/Dordrecht/London},
    4948   publisher = {Kluwer Academic Publishers},
    4949   author = {Granlund, G.H. and Knutsson, H.}
    4950 }
    4951 @mastersthesis{Brink1999,
    4952   year = {1999},
    4953   title = {Three Dimensional Image Analysis of Microstructures in Microscopical Images},
    4954   address = {Delft, The Netherlands},
    4955   school = {Delft University of Technology},
    4956   author = {Brink, N. van den}
    4957 }
    4958 @article{Acton2000a,
    4959   year = {2000},
    4960   title = {Area Operators for Edge Detection},
    4961   pages = {771--777},
    4962   journal = {Pattern Recognition Letters},
    4963   volume = {21},
    4964   author = {Acton, Scott T. and Mukherjee, Dipti Prasad}
    4965 }
    4966 @article{Forster2005,
    4967   number = {13},
    4968   year = {2005},
    4969   title = {Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography},
    4970   pages = {4729-4734},
    4971   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    4972   volume = {102},
    4973   author = {{F\"orster},F. and Medalia, O. and Zauberman, N. and Baumeiser, W. and Fass, D.}
    4974 }
    4975 @article{Mardia1999,
    4976   year = {1999},
    4977   title = {Estimation of torsion},
    4978   pages = {373--381},
    4979   journal = {Journal of Applied Statistics},
    4980   volume = {26},
    4981   author = {Mardia, K.V. and Morris, R.J. and Walder, A.N. and Koenderink, J.J}
    4982 }
    4983 @article{Torr1997,
    4984   number = {8},
    4985   year = {1997},
    4986   title = {Robust Parameterization and Computation of the Trifocal Tensor},
    4987   pages = {591--605},
    4988   journal = {Image and Vision Computing},
    4989   volume = {15},
    4990   author = {Torr, P.H.S. and Zisserman, A.}
    4991 }
    4992 @article{Richards1959,
    4993   number = {1274},
    4994   year = {1959},
    4995   title = {Electromagnetic Diffraction in Optical Systems. {II.} Structure of the Image Field in an Aplanatic System},
    4996   pages = {358-379},
    4997   journal = {Proceedings of the Royal Society of London A},
    4998   volume = {253},
    4999   author = {Richards, B. and Wolf, E.}
    5000 }
    5001 @incollection{Yuille1988,
    5002   year = {1988},
    5003   title = {Scaling and fingerprint theorems for zero-crossings},
    5004   booktitle = {Advances in computer vision, volume 2},
    5005   pages = {47--78},
    5006   editor = {Christopher Brown},
    5007   chapter = {2},
    5008   publisher = {Lawrence Erlbaum Associates, Inc},
    5009   author = {Yuille, A.L. and Poggio, T.}
    5010 }
    5011 @article{Zucker1985,
    5012   year = {1985},
    5013   title = {Early Orientation Selection: Tangent Fields and the Dimensionality of Their Support},
    5014   pages = {74--103},
    5015   journal = {Computer Vision, Graphics, and Image Processing},
    5016   volume = {32},
    5017   author = {Zucker, S.W.}
    5018 }
    5019 @article{Zucker1981,
    5020   number = {3},
    5021   year = {1981},
    5022   title = {A 3-D edge operator},
    5023   pages = {324--331},
    5024   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5025   volume = {3},
    5026   author = {Zucker, S.W. and Hummel, R.A.}
    5027 }
    5028 @article{Kurdy1989,
    5029   number = {2},
    5030   year = {1989},
    5031   title = {Directional Mathematical morphology Operations},
    5032   pages = {473--480},
    5033   journal = {Acta. Stereology},
    5034   volume = {8},
    5035   author = {Kurdy, M.B. and Jeulin, D.}
    5036 }
    5037 @article{Post2005,
    5038   number = {2},
    5039   year = {2005},
    5040   title = {One- and two-photon photoactivation of a {paGFP}-fusion protein in live {Drosophila} embryos},
    5041   pages = {325-330},
    5042   journal = {FEBS Letters},
    5043   volume = {579},
    5044   author = {Post, J.N. and Lidke, K.A. and Rieger, B. and Arndt-Jovin, D.J.}
    5045 }
    5046 @article{Bitter2001,
    5047   number = {3},
    5048   month = {July--September},
    5049   year = {2001},
    5050   title = {Penalized-Distance Volumetric Skeleton Algorithm},
    5051   pages = {195--205},
    5052   journal = {IEEE Transactions on Visualization and Computer Graphics},
    5053   volume = {7},
    5054   author = {Bitter, I. and Kaufman, A.E.}
    5055 }
    5056 @article{Jeulin2001,
    5057   year = {2001},
    5058   title = {Gypsum Morphological Analysis and Modeling},
    5059   pages = {299--311},
    5060   journal = {Cement {\&} Concrete Composites},
    5061   volume = {23},
    5062   author = {Jeulin, D. and Monnaie, P. and P?onnet, F.}
    5063 }
    5064 @article{OConner1999,
    5065   number = {7},
    5066   year = {1999},
    5067   title = {Microscale Flow Modeling in Geologic Materials},
    5068   pages = {611--616},
    5069   journal = {Phys. Chem. Earth (A)},
    5070   volume = {24},
    5071   author = {O'Conner, R.M. and Fredrich, J.T.}
    5072 }
    5073 @inproceedings{Bluestein1968,
    5074   year = {1968},
    5075   title = {A Linear Filtering Approach to the Computation of the Discrete {Fourier} Transform},
    5076   booktitle = {Northeast Electronics Res. and Eng. Meeting Record},
    5077   pages = {218--129},
    5078   volume = {10},
    5079   annote = {key_fft},
    5080   author = {Bluestein, L.I.}
    5081 }
    5082 @article{Thust1996a,
    5083   year = {1996},
    5084   title = {Focal-series reconstruction in {HRTEM}: simulation studies on non-peridc objects},
    5085   pages = {211-230},
    5086   journal = {Ultramicroscopy},
    5087   volume = {64},
    5088   author = {Thust, A. and Coene, W.M.J. and Beeck, M. op de and Dyck, D. van}
    5089 }
    5090 @book{Valeur2002,
    5091   year = {2002},
    5092   title = {Molecular Fluorescence},
    5093   address = {Weinheim},
    5094   publisher = {Wiley-VCH},
    5095   author = {Valeur, B.}
    5096 }
    5097 @article{Hiraoka1992,
    5098   number = {6},
    5099   year = {1992},
    5100   title = {Temporal and Spatial Coordination of Chromosome Movement, Spindle Formation, and Nuclear Envelope Breakdown During Prometaphase in Drosophila melanogaster Embryos},
    5101   pages = {2815-2828},
    5102   journal = {The Journal of Cell Biology},
    5103   volume = {111},
    5104   author = {Hiraoka, Y. and Agard, D.A. and Sedat, J.W.}
    5105 }
    5106 @article{Heeger1988,
    5107   year = {1988},
    5108   title = {Optical flow from spatio-temporal filters},
    5109   pages = {279--302},
    5110   journal = {International Journal of Computer Vision},
    5111   volume = {1},
    5112   author = {Heeger, D.J..}
    5113 }
    5114 @article{Cox1999,
    5115   number = {9},
    5116   month = {September},
    5117   year = {1999},
    5118   title = {Two- and Three-Dimensional Image Rotation Using the {FFT}},
    5119   pages = {1297--1299},
    5120   journal = {IEEE Transactions on Image Processing},
    5121   volume = {8},
    5122   annote = {key_fft},
    5123   author = {Cox, R.W. and Raoqiong, T.}
    5124 }
    5125 @article{Parent1989,
    5126   number = {8},
    5127   month = {August},
    5128   year = {1989},
    5129   title = {Trace Inference, Curvature Consistency, and Curve Detection},
    5130   pages = {823--839},
    5131   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    5132   volume = {11},
    5133   author = {Parent, P. and Zucker, S.W.}
    5134 }
    5135 @article{Ludtke2001,
    5136   year = {2001},
    5137   title = {A 11.5 single particle reconstruction of {GroEL} using {EMAN}},
    5138   pages = {253-262},
    5139   journal = {Journal of Molecular Biology},
    5140   volume = {314},
    5141   author = {Ludtke, S.J. and Jakana, J. and Song, J.-L. and Chuang, D.T. and Chiu, W.}
    5142 }
    5143 @article{Niessen1997,
    5144   number = {2},
    5145   year = {1997},
    5146   title = {A multiscale approach to image sequence analysis},
    5147   pages = {259-268},
    5148   journal = {Computer Vision and Image Understanding},
    5149   volume = {65},
    5150   author = {Niessen, W.J. and Duncan, J.S. and Nielsen, M. and Florack, L.M.J. and Haar Romeny, B.M. ter and Viergever, M.A.}
    5151 }
    5152 @article{Hirsh1976,
    5153   number = {2},
    5154   year = {1976},
    5155   title = {High resolution electron microscopic studies of genetic regulation},
    5156   pages = {471-490},
    5157   journal = {Journal of Molecular Biology},
    5158   volume = {108},
    5159   author = {Hirsh, J. and Schleif, R.}
    5160 }
    5161 @article{Gemkow2001,
    5162   year = {2001},
    5163   title = {Develpoment regulation of {DNA}-topoisomerases during Drosophila embryogenesis},
    5164   pages = {114-121},
    5165   journal = {Experimental Cell Research},
    5166   volume = {262},
    5167   author = {Gemkow, M.J. and Dichter, J. and Ardent-Jovin, D.J.}
    5168 }
    5169 @book{Grivet1965,
    5170   year = {1965},
    5171   title = {Electron Optics},
    5172   note = {Copy Peter Tiemeijer},
    5173   address = {London},
    5174   publisher = {Pergamon Press},
    5175   author = {Grivet, P.}
    5176 }
    5177 @inproceedings{Forstner1987,
    5178   month = {June},
    5179   year = {1987},
    5180   title = {A Fast Operator for Detection and Precise Location of Distinct Points, Corners and Centres of Circular Features},
    5181   booktitle = {ISPRS Intercommission Workshop (Interlaken)},
    5182   pages = {149--155},
    5183   annote = {Not in collection},
    5184   author = {{F\"orstner}, W. and {G\"ulch}, E.}
    5185 }
    5186 @article{Squire2004,
    5187   number = {1},
    5188   year = {2004},
    5189   title = {Red-edge anisotropy microscopy enables dynamic imaging of homo-{FRET} between fluorescent proteins in cells},
    5190   pages = {62-69},
    5191   journal = {Journal of Structural Biology},
    5192   volume = {147},
    5193   author = {Squire, A. and Verveer, P.J. and Rocks, O. and Bastiaens, P.I.H.}
    5194 }
    5195 @phdthesis{Westin1994,
    5196   year = {1994},
    5197   title = {A Tensor Framework for Multidimensional Signal Processing},
    5198   address = {{Link\"oping, Sweden}},
    5199   school = {{Link\"oping University}},
    5200   author = {Westin, C.F.}
    5201 }
    5202 @inproceedings{Matheron2002,
    5203   year = {2002},
    5204   title = {The Birth of Mathematical Morphology},
    5205   booktitle = {Mathematical Morphology, Proceedings of the VI International Symposium ISMM, Sydney, April 2002},
    5206   editor = {Talbot, H. and Beare, R.},
    5207   address = {Collingwood, Australia},
    5208   publisher = {CSIRO Publishing},
    5209   author = {Matheron, G. and Serra, J.}
    5210 }
    5211 @article{Gauch1993,
    5212   number = {6},
    5213   month = {June},
    5214   year = {1993},
    5215   title = {Multiresolution Analysis of Ridges and Valleys in Grey-Scale Images},
    5216   pages = {635--646},
    5217   journal = {IEEE Transactions on Pattern Analysis and Machine Analysis},
    5218   volume = {15},
    5219   author = {Gauch, J.M. and Pizer, S.M.}
    5220 }
    5221 @article{Dellby2001,
    5222   number = {3},
    5223   year = {2001},
    5224   title = {Progress in aberration-corrected scanning transmission electron microscopy},
    5225   pages = {177-185},
    5226   journal = {Journal of Electron Microscopy},
    5227   volume = {50},
    5228   author = {Bellby, N. and Krinvanek, O.L. and Nellist, P.D. and Batson, P.E. and Lupini, A.R.}
    5229 }
    5230 @inproceedings{Westin1992,
    5231   series = {LNCS 588},
    5232   year = {1992},
    5233   title = {The {M\"obius} Strip Parameterization for Line Extraction},
    5234   booktitle = {Computer Vision -- ECCV92. Proceedings, 1992},
    5235   pages = {33--38},
    5236   editor = {Sandini, G.},
    5237   volume = {588},
    5238   address = {Heidelberg},
    5239   publisher = {Springer-Verlag},
    5240   author = {Westin, C.-F. and Knutsson, H.},
    5241   organization = {Springer}
    5242 }
    5243 @article{Gauch1993a,
    5244   number = {8},
    5245   month = {August},
    5246   year = {1993},
    5247   title = {The Intensity Axis of Symmetry and its Application to Image Segmentation},
    5248   pages = {753--770},
    5249   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5250   volume = {15},
    5251   author = {Gauch, J.M. and Pizer, S.M.}
    5252 }
    5253 @article{Bruun1978,
    5254   number = {1},
    5255   month = {February},
    5256   year = {1978},
    5257   title = {z-Transform {DFT} Filters and {FFT}'s},
    5258   pages = {56--63},
    5259   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    5260   volume = {26},
    5261   annote = {key_fft},
    5262   author = {Bruun, G.}
    5263 }
    5264 @article{Cheng1992,
    5265   number = {4},
    5266   year = {1992},
    5267   title = {An Adaptive Morphological Filter for Image Processing},
    5268   pages = {533-539},
    5269   journal = {IEEE Transactions on Image Processing},
    5270   volume = {1},
    5271   author = {Cheng, F. and Venetsanopoulos, A. N.}
    5272 }
    5273 @article{Rockmore2000,
    5274   number = {1},
    5275   month = {January/February},
    5276   year = {2000},
    5277   title = {The {FFT} -- An Algorithm the Whole Family Can Use},
    5278   pages = {60--64},
    5279   journal = {Computing in Science \& Engineering},
    5280   volume = {2},
    5281   author = {Rockmore, D.}
    5282 }
    5283 @book{Porat1994,
    5284   year = {1994},
    5285   title = {Digital Signal Processing of Random Signals},
    5286   publisher = {Prentice Hall},
    5287   author = {Porat, B.}
    5288 }
    5289 @inproceedings{Knutsson1981a,
    5290   year = {1981},
    5291   title = {Anisotropic Filtering Controlled by Image Content},
    5292   booktitle = {Proceedings of the 2nd Scandinavian Conference on Image Analysis (Finland)},
    5293   author = {Knutsson, H. and Wilson, R. and Granlund, G.H.}
    5294 }
    5295 @book{Chung1974,
    5296   edition = {second},
    5297   year = {1974},
    5298   title = {Elementary Probability Theory with Stochastic Processes},
    5299   publisher = {Springer Verlag},
    5300   author = {Chung, K.L.}
    5301 }
    5302 @inproceedings{Barman1991a,
    5303   year = {1991},
    5304   title = {Estimation of velocity, acceleration and disparity in time sequences},
    5305   booktitle = {Proc. Conf. Pattern Recognition ICPR'91},
    5306   pages = {44-51},
    5307   author = {{B\aa rman}, H. and Haglund, L. and Granlund, G. H. and Knutsson, H.}
    5308 }
    5309 @article{Gui2000,
    5310   number = {1},
    5311   year = {2000},
    5312   title = {A comparative study of the MQD method and several correlation-based PIV evaluation algorithms},
    5313   pages = {36-44},
    5314   journal = {Experiments in Fluids},
    5315   volume = {28},
    5316   author = {Gui, L. and Merzkirch, W.}
    5317 }
    5318 @article{Li1994,
    5319   number = {8},
    5320   year = {1994},
    5321   title = {Nonlinear Diffusion with Multiple Edginess Thresholds},
    5322   pages = {1029--1037},
    5323   journal = {Pattern Recognition},
    5324   volume = {27},
    5325   author = {Li, X. and Chen, T.}
    5326 }
    5327 @article{Canny1986,
    5328   number = {6},
    5329   month = {November},
    5330   year = {1986},
    5331   title = {A Computational Approach to Edge Detection},
    5332   pages = {679--697},
    5333   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5334   volume = {8},
    5335   author = {Canny, J.}
    5336 }
    5337 @article{Rodrigo2004a,
    5338   number = {19},
    5339   year = {2005},
    5340   title = {Real-time three-dimensional optical micromanipulation of multiple particles and living cells},
    5341   pages = {2270-2273},
    5342   journal = {Optics Letters},
    5343   volume = {29},
    5344   author = {Rodrigo, P.J. and Daria, V.R. and {Gl\"uckstad}, J.}
    5345 }
    5346 @inproceedings{Bracewell1984,
    5347   month = {August},
    5348   year = {1984},
    5349   title = {The Fast {H}artley Transform},
    5350   booktitle = {Proc. IEEE},
    5351   pages = {1010--1018},
    5352   annote = {key_fft},
    5353   author = {Bracewell, R.N.}
    5354 }
    5355 @article{Coggins1985,
    5356   year = {1985},
    5357   title = {A Spatial Filtering Approach to Texture Analysis},
    5358   pages = {195--203},
    5359   journal = {Pattern Recognition Letters},
    5360   volume = {3},
    5361   author = {Coggins, J.M. and Jain, A.K.}
    5362 }
    5363 @inproceedings{Li1998,
    5364   series = {Computational Imaging and Vision},
    5365   year = {1998},
    5366   title = {Generation of the {Euclidean} Skeleton by a Bisector Decision Rule on a Two-Shortest-Vector Distance Map},
    5367   booktitle = {Mathematical Morphology and its Applications to Image and Signal Processing},
    5368   pages = {151--158},
    5369   editor = {Heijmans, H.J.A.M. and Roerdink, J.B.T.M.},
    5370   volume = {12},
    5371   publisher = {Kluwer, Dordrecht},
    5372   author = {Li, H. and Vossepoel, A.M.}
    5373 }
    5374 @article{Horbelt2002,
    5375   number = {4},
    5376   month = {April},
    5377   year = {2002},
    5378   title = {Discretization of the Radon Transform and of its Inverse by Spline Convolutions},
    5379   pages = {363--376},
    5380   journal = {IEEE Transactions on Medical Imaging},
    5381   volume = {21},
    5382   author = {Horbelt, Stefan and Liebling, Michael and Unser, Michael}
    5383 }
    5384 @article{Bracewell1983,
    5385   number = {12},
    5386   month = {December},
    5387   year = {1983},
    5388   title = {Discrete {H}artley Transform},
    5389   pages = {1832--1835},
    5390   journal = {J. Opt. Soc. Am.},
    5391   volume = {73},
    5392   annote = {key_fft},
    5393   author = {Bracewell, R.N.}
    5394 }
    5395 @article{Duda1972,
    5396   number = {1},
    5397   year = {1972},
    5398   title = {Use of the {Hough} Transformation to Detect Lines and Curves in Pictures},
    5399   pages = {11--15},
    5400   journal = {Communications of the ACM},
    5401   volume = {15},
    5402   author = {Duda, R.O. and Hart, P.E.}
    5403 }
    5404 @article{Hopt2001,
    5405   number = {4},
    5406   month = {April},
    5407   year = {2001},
    5408   title = {Highly Nonlinear Photodamage in Two-Photon Fluorescence Microscopy},
    5409   pages = {2029-2036},
    5410   journal = {Biophysical Journal},
    5411   volume = {80},
    5412   author = {Hopt, A. and Neher, E.}
    5413 }
    5414 @article{Jensen2000,
    5415   year = {2000},
    5416   title = {Defocus-gradient corrected back-projection},
    5417   pages = {57-64},
    5418   journal = {Ultramicroscopy},
    5419   volume = {84},
    5420   author = {Jensen, G.J. and Kornberg, R.D.}
    5421 }
    5422 @article{Sanz1989,
    5423   number = {7},
    5424   month = {July},
    5425   year = {1989},
    5426   title = {Image Representation by Sign Information},
    5427   pages = {729--738},
    5428   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5429   volume = {11},
    5430   author = {Sanz, J.L.C. and Huang, T.T.}
    5431 }
    5432 @article{Batson2003,
    5433   year = {2003},
    5434   title = {Aberration correction results in the {IBM STEM} instrument},
    5435   pages = {239-249},
    5436   journal = {Ultramicroscopy},
    5437   volume = {96},
    5438   author = {Batson, P.E.}
    5439 }
    5440 @article{Dorst2000,
    5441   number = {2},
    5442   month = {February},
    5443   year = {2000},
    5444   title = {The Support Cone: A Representational Tool for the Analysis of Boundaries and Their Interactions},
    5445   pages = {174--178},
    5446   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5447   volume = {22},
    5448   author = {Dorst, L. and Boomgaard, R. van den}
    5449 }
    5450 @article{Torre1986,
    5451   number = {2},
    5452   month = {March},
    5453   year = {1986},
    5454   title = {On Edge Detection},
    5455   pages = {1986},
    5456   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5457   volume = {8},
    5458   author = {Torre, V. and Poggio, T.A.}
    5459 }
    5460 @article{Montanari1968,
    5461   number = {4},
    5462   year = {1968},
    5463   title = {A Method for Obtaining Skeletons Using a Quasi-Euclidean Distance.},
    5464   pages = {600-624},
    5465   journal = {Journal of the Association for Computing Machinery},
    5466   volume = {15},
    5467   author = {Montanari,U.}
    5468 }
    5469 @inproceedings{Anwander2000,
    5470   year = {2000},
    5471   title = {Segmentation of Crystals in Microscopic Images using Multi-scale Color Gradient (MCG)},
    5472   booktitle = {International Conference on Color in Graphics and Image Processing CGIP2000},
    5473   author = {Anwander, A. and Neyran, B. and Baskurt, A.}
    5474 }
    5475 @inproceedings{Ginkel1997a,
    5476   month = {June 2-4},
    5477   year = {1997},
    5478   title = {Multi-Orientation Estimation: Selectivity and Localization},
    5479   booktitle = {Proceedings of the 3rd Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands)},
    5480   pages = {99--105},
    5481   editor = {Bal, H.E. and Corporaal, H. and Jonker, P.P. and Tonino, J.F.M.},
    5482   author = {Ginkel, M. van and Verbeek, P.W. and van Vliet, L.J.}
    5483 }
    5484 @article{Chen1989,
    5485   number = {5},
    5486   year = {1989},
    5487   title = {An Interpretive Model of Line Continuation in Human Visual Perception},
    5488   pages = {619--639},
    5489   journal = {Pattern Recognition},
    5490   volume = {22},
    5491   author = {Chen, Y.S. and Hsu, W.H.}
    5492 }
    5493 @inproceedings{Ehrich1978,
    5494   year = {1978},
    5495   title = {Elements of a structural model of texture},
    5496   booktitle = {Proceedings of PRIP},
    5497   pages = {319--326},
    5498   author = {Ehrich, R.W. and Lai, P.F.}
    5499 }
    5500 @misc{Lasenby1999,
    5501   year = {1999},
    5502   title = {A Lecture Course in Geometric Algebra},
    5503   howpublished = {{\tt http://www.mrao.cam.ac.uk/~clifford/ptIIIcourse/course99/}, Geometric Algebra Research Group, Cambridge University},
    5504   author = {Lasenby, A. and Doran, C.}
    5505 }
    5506 @inproceedings{Beaudet1978,
    5507   year = {1978},
    5508   title = {Rotationally Invariant Image Operators},
    5509   booktitle = {International Joint Conference on Pattern Recognition},
    5510   pages = {579--583},
    5511   author = {Beaudet, P.R.}
    5512 }
    5513 @article{Yildiz2003,
    5514   year = {2003},
    5515   title = {Myosin V Walks Hand-Over-Hand: Single Fluorophore Imaging with 1.5 nm localization},
    5516   pages = {2061-2066},
    5517   journal = {Science},
    5518   volume = {300},
    5519   author = {Yildiz, A. and Forkey, J.N. and McKinney, S.A. and Ha, T. and Goldman, Y.E. and Selvin, P.R.}
    5520 }
    5521 @article{ArndtJovin2006,
    5522   year = {2006},
    5523   title = {Quantum dots shed light on processes in living cells},
    5524   pages = {1-3},
    5525   journal = {SPIE Newsroom},
    5526   volume = {DOI: 10.1117/2.1200605.0228},
    5527   author = {Arndt-Jovin, D.J. and Lidke, D.S. and Lidke, K.A. and Rieger, B. and Jovin, T.M.}
    5528 }
    5529 @article{Westerweel2000,
    5530   number = {7},
    5531   year = {2000},
    5532   title = {Theoretical analysis of the measurement precision in particle image velocimetry},
    5533   pages = {S3-S12},
    5534   journal = {Experiments in Fluids },
    5535   volume = {29},
    5536   author = {Westerweel, J.}
    5537 }
    5538 @article{Schenkeveld1997,
    5539   number = {1},
    5540   year = {1997},
    5541   title = {Simulations of Measurements of Fluorescene Lifetimes Using Noise-Modulated Light},
    5542   pages = {55-58},
    5543   journal = {Journal of Fluorescence},
    5544   volume = {7},
    5545   author = {Schenkeveld, V.M.E. and Young, I.T.}
    5546 }
    5547 @article{Calabi1998,
    5548   number = {2},
    5549   year = {1998},
    5550   title = {Differential and Numerically Invariant Signature Curves Applied to Object Recognition},
    5551   pages = {107--135},
    5552   journal = {International Journal of Computer Vision},
    5553   volume = {26},
    5554   author = {Calabi, E. and Olver, P.J. and Shakiban, C. and Tannenbaum, A. and Haker, S.}
    5555 }
    5556 @article{Barth1993,
    5557   number = {6},
    5558   year = {1993},
    5559   title = {Image Encoding, Labeling, and Reconstruction from Differential Geometry},
    5560   pages = {428--446},
    5561   journal = {Graphical Models and Image Processing},
    5562   volume = {55},
    5563   author = {Barth, E. and Caelli, T. and Zetzsche, C.}
    5564 }
    5565 @book{Milnor1965,
    5566   year = {1965},
    5567   title = {Topology from the differentiable viewpoint},
    5568   address = {Princeton, New Jersey},
    5569   publisher = {Princeton University Press},
    5570   author = {Milnor, J.W.}
    5571 }
    5572 @article{Mirza1993,
    5573   number = {1},
    5574   month = {February},
    5575   year = {1993},
    5576   title = {Performance Evaluation of a Class of {M}-Estimators for Surface Parameter Estimation in Noisy Range Data},
    5577   pages = {75--85},
    5578   journal = {IEEE Transactions on Robotics and Automation},
    5579   volume = {9},
    5580   author = {Mirza, M.J. and Boyer, K.L.}
    5581 }
    5582 @article{Brockett1994,
    5583   number = {12},
    5584   year = {1994},
    5585   title = {Evolution Equations for Continuous-Scale Morphological Filtering},
    5586   pages = {3377-3386},
    5587   journal = {IEEE Transactions on Signal Processing},
    5588   volume = {42},
    5589   author = {Brockett, R. W. and Maragos, P.}
    5590 }
    5591 @inproceedings{Brockett1992,
    5592   year = {1992},
    5593   title = {Evolution Equations for Continuous-Scale Morphology},
    5594   booktitle = {IEEE International Conference on Acoustics, Speech and Signal Processing},
    5595   pages = {125-128},
    5596   volume = {3},
    5597   author = {Brockett, R. W. and Maragos, P.}
    5598 }
    5599 @article{Clapp2004,
    5600   year = {2004},
    5601   title = {Fluorescence Resonance Energy Transfer Between Quantum Dot Donors and Dye-Labeled Protein Acceptors},
    5602   pages = {301-310},
    5603   journal = {Journal of the American Chemical Society},
    5604   volume = {126},
    5605   author = {Clapp, A.R. and Medintz, I.L. and Mauro, J.M. and Fisher, B.R. and Bawendi, M.G. and Mattoussi, H.}
    5606 }
    5607 @article{Chen1995,
    5608   number = {3},
    5609   year = {1995},
    5610   title = {Recursive Erosion, Dilation, Opening, and Closing Transforms},
    5611   pages = {335-346},
    5612   journal = {IEEE Transactions on Image Processing},
    5613   volume = {4},
    5614   author = {Chen, S. and Haralick, R.M.}
    5615 }
    5616 @article{Curtis1987,
    5617   number = {1},
    5618   month = {January},
    5619   year = {1987},
    5620   title = {Reconstruction of Multidimensional Signals from Zero Crossings},
    5621   pages = {221--231},
    5622   journal = {Journal of the Optical Society of America A},
    5623   volume = {4},
    5624   author = {Curtis, S.R. and Oppenheim, A.V.}
    5625 }
    5626 @article{Rattey1981,
    5627   number = {5},
    5628   month = {October},
    5629   year = {1981},
    5630   title = {Sampling the 2-{D} {R}adon Transform},
    5631   pages = {994--1002},
    5632   journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
    5633   volume = {29},
    5634   annote = {key_radon},
    5635   author = {Rattey, P.A. and Lindgren, A.G.}
    5636 }
    5637 @article{Pluim2003,
    5638   year = {2003},
    5639   title = {Mutual-Information-based registration of medical images: a survey},
    5640   pages = {986-1004},
    5641   journal = {IEEE Transactions on Medical Imaging},
    5642   volume = {22},
    5643   author = {Pluim, J.P.W. and Maintz, J.B.A. and Viergever, M.A.}
    5644 }
    5645 @article{Volkmann2003,
    5646   number = {6},
    5647   year = {2003},
    5648   title = {Myosin isoforms show unique conformations in the actin-bound state},
    5649   pages = {3227-3232},
    5650   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    5651   volume = {100},
    5652   author = {Volkmann, N. and Ouyang, G. and Trybus, K.M. and DeRosier, D.J. and Lowey, S. and Hanein, D.}
    5653 }
    5654 @article{Pham2006,
    5655   year = {2006},
    5656   title = { Robust fusion of irregularly sampled data using adaptive normalized convolution},
    5657   pages = {1-12},
    5658   journal = {EURASIP Journal on Applied Signal Processing},
    5659   volume = { },
    5660   author = {Pham, T.Q. and Vliet, L.J. van and Schutte, K.}
    5661 }
    5662 @article{Hoyer2004,
    5663   number = {1},
    5664   year = {2004},
    5665   title = {Rapid self-assembly of $\alpha$-synuclein observed by in situ atomic force microscopy},
    5666   pages = {127-139},
    5667   journal = {Journal of Molecular Biology},
    5668   volume = {340},
    5669   author = {Hoyer, W. and Cherny, D.I. and Subramaniam, V. and Jovin, T.M.}
    5670 }
    5671 @inproceedings{Pham2005,
    5672   series = {Proceedings of SPIE Defense \& Security},
    5673   month = {March 29-30},
    5674   year = {2005},
    5675   title = {Performance of optimal registration estimators},
    5676   booktitle = {Visual Information Processing XIV},
    5677   pages = {133-144},
    5678   editor = {Rahman, Z. and Schowengerdt, R.A. and Reichenbach, S.E.},
    5679   volume = {5817},
    5680   address = {Orlando, USA},
    5681   author = {Pham, T.Q. and Bezuijen, M. and Vliet, L.J. van and Schutte, K. and Luengo Hendriks, C.L.}
    5682 }
    5683 @article{Harada2005,
    5684   number = {1},
    5685   year = {2005},
    5686   title = {Optical system for double-biprism electron holography},
    5687   pages = {19-27},
    5688   journal = {Journal of Electron Microscopy},
    5689   volume = {54},
    5690   author = {Harada, K. and Akashi, T. and Togawa, Y. and Matsuda, T. and Tonomura, A.}
    5691 }
    5692 @inproceedings{Pham2003,
    5693   series = {LNCS 2749 },
    5694   month = {June 29 -July 2 },
    5695   year = {2003},
    5696   title = {Normalized averaging using adaptive applicability functions with applications in image reconstruction from sparsely and randomly sampled data},
    5697   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    5698   pages = {485-492},
    5699   editor = {{Big\"un}, J. and Gustavsson, T. },
    5700   address = {Berlin},
    5701   publisher = {Springer-Verlag },
    5702   author = {Pham, T.Q. and Vliet, L.J. van}
    5703 }
    5704 @article{Scharcanski2000,
    5705   number = {5},
    5706   month = {October},
    5707   year = {2000},
    5708   title = {Stochastic Texture Image Estimators for Local Spatial Anisotropy and Its Variability},
    5709   pages = {971--979},
    5710   journal = {IEEE Transactions on Instrumentation and Measurement},
    5711   volume = {49},
    5712   author = {Scharcanski, J. and Dodson, C.T.J.}
    5713 }
    5714 @article{Ballard1983,
    5715   number = {6},
    5716   year = {1983},
    5717   title = {Viewer Independent Shape Recognition},
    5718   pages = {653--660},
    5719   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5720   volume = {5},
    5721   annote = {key_radon},
    5722   author = {Ballard, D.H. and Sabbah, D.}
    5723 }
    5724 @incollection{Alvarez1994,
    5725   year = {1994},
    5726   title = {Morphological Approach to Multi-scale Analysis: From Principles to Equations},
    5727   booktitle = {Geometry-Driven Diffusion in Computer Vision},
    5728   editor = {Viergever, M. A.},
    5729   address = {Dordrecht},
    5730   publisher = {Kluwer Academic Publishers},
    5731   author = {Alvarez, L. and Morel, J.-M.}
    5732 }
    5733 @inproceedings{Diehl1989,
    5734   year = {1989},
    5735   title = {Planar motion estimation with a fast converging algorithm},
    5736   booktitle = {Proc. 8th Int. Conf. Pattern Recognition, ICPR'86},
    5737   pages = {1099--1102},
    5738   address = {Paris, France},
    5739   author = {Diehl, N. and Burkhardt, H.}
    5740 }
    5741 @article{Dirks1999,
    5742   number = {3-4},
    5743   year = {1999},
    5744   title = {Synthesis, processing, and transport of {RNA} within the three-dimensional context of the cell nucleus},
    5745   pages = {191-201},
    5746   journal = {Crit Rev Eukaryot Gene Expr},
    5747   volume = {9},
    5748   author = {Dirks, R.W. and Hattinger, C.M. and Molenaar, C. and Snaar, S.P.}
    5749 }
    5750 @phdthesis{Kirchgessner2003,
    5751   month = {April},
    5752   year = {2003},
    5753   title = {Extraktion Physiologischer Koordinatensysteme von Pflanzenwurzeln und {-Bl\"attern} aus Bildsequenzen},
    5754   address = {Heidelberg, Germany},
    5755   school = {Ruprechts-Karls-{Universit\"at} University},
    5756   author = {Kirchgessner, N.}
    5757 }
    5758 @article{Vandergheynst2002,
    5759   number = {4},
    5760   month = {April},
    5761   year = {2002},
    5762   title = {Directional Dyadic Wavelet Transforms: Design and Algorithms},
    5763   pages = {363--372},
    5764   journal = {IEEE Transactions on Image Processing},
    5765   volume = {11},
    5766   author = {Vandergheynst, P. and Gobbers, J.-F.}
    5767 }
    5768 @article{Meyer2002,
    5769   year = {2002},
    5770   title = {A new method for the determination of the wave aberration function for high resolution {TEM} {1. Measurement} of the symmetric aberrations},
    5771   pages = {89-109},
    5772   journal = {Ultramicroscopy},
    5773   volume = {92},
    5774   author = {Meyer, R.R. and Kirkland, A.I. and Saxton, W.O.}
    5775 }
    5776 @article{Kubitscheck2000,
    5777   month = {April},
    5778   year = {2000},
    5779   title = {Imaging and Tracking of Single {GFP} Molecules in Solution},
    5780   pages = {2170-2179},
    5781   journal = {Biophysical Journal},
    5782   volume = {78},
    5783   author = {Kubitscheck, U. and {K\"uckmann}, O. and Kues, T. and Peters, R.}
    5784 }
    5785 @inproceedings{Harris1988,
    5786   month = {31 August--2 September},
    5787   year = {1988},
    5788   title = {A Combined Corner and Edge Detector},
    5789   booktitle = {Proceedings of the fourth Alvey Vision Conference},
    5790   pages = {147--151},
    5791   author = {Harris, C. and Stephens, M.},
    5792   organization = {University of Manchester}
    5793 }
    5794 @inproceedings{Harris1987,
    5795   year = {1987},
    5796   title = {Determination of Ego-Motion from Matched Points},
    5797   booktitle = {Proceedings of the Alvey Vision Conference},
    5798   annote = {Not in collection},
    5799   author = {Harris, C.G.}
    5800 }
    5801 @article{Muller2001,
    5802   number = {3},
    5803   year = {2001},
    5804   title = {Optimizing the environment for sub-0.2 nm scanning transmission electron microscopy},
    5805   pages = {219-226},
    5806   journal = {Journal of Electron Microscopy},
    5807   volume = {50},
    5808   author = {Muller, D.A. and Grazul, J.}
    5809 }
    5810 @misc{Mathematica,
    5811   year = {1998},
    5812   title = {Mathematica 4},
    5813   note = {{\tt www.wolfram.com}},
    5814   author = {Wolfram Research}
    5815 }
    5816 @article{Leis2006,
    5817   number = {3},
    5818   year = {2006},
    5819   title = {The essential role of digital signal processing in automated tomography},
    5820   pages = {95-103},
    5821   journal = {IEEE Signal Processing Magazine},
    5822   volume = {23},
    5823   author = {Leis, A.P. and Beck, M. and Gruska, M. and Best, C. and Hegerl, R. and Baumeister, W. and Leis, J.W.}
    5824 }
    5825 @article{Kube1996,
    5826   number = {10},
    5827   month = {October},
    5828   year = {1996},
    5829   title = {Scale-space Properties of Quadratic Feature Detectors},
    5830   pages = {987--999},
    5831   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    5832   volume = {18},
    5833   author = {Kube, P. and Perona, P.}
    5834 }
    5835 @article{Bluestein1970,
    5836   number = {4},
    5837   month = {December},
    5838   year = {1970},
    5839   title = {A Linear Filtering Approach to the Computation of Discrete {Fourier} Transform},
    5840   pages = {451--455},
    5841   journal = {IEEE Transactions on Audio and Electroacoustics},
    5842   volume = {18},
    5843   annote = {key_fft},
    5844   author = {Bluestein, L.I.}
    5845 }
    5846 @article{Danielsson1980,
    5847   year = {1980},
    5848   title = {Euclidean Distance Mapping},
    5849   pages = {227--248},
    5850   journal = {Computer Graphics and Image Processing},
    5851   volume = {14},
    5852   author = {Danielsson, P.-E.}
    5853 }
    5854 @article{Molenaar2003a,
    5855   number = {24},
    5856   year = {2003},
    5857   title = {Visualizing telomere dynamics in living mammalian cells using {PNA} probes},
    5858   pages = {6631-6641},
    5859   journal = {The EMBO Journal},
    5860   volume = {22},
    5861   author = {Molenaar, C. and Wiesmeijer, K. and Verwoerd, N.P. and Khazen, S. and Eils, R. and Tanke, H.J. and Dirks, R.W.}
    5862 }
    5863 @article{Rieger2004d,
    5864   number = {3},
    5865   year = {2004},
    5866   title = {Diffusion of microspheres in sealed and open microarrays},
    5867   pages = {218-225},
    5868   journal = {Microscopy Research and Technique},
    5869   volume = {65},
    5870   author = {Rieger, B. and Dietrich, H.R.C. and Doel, L.R. van den and Vliet, L.J. van}
    5871 }
    5872 @phdthesis{Rieger2004a,
    5873   year = {2004},
    5874   title = {Structure from Motion in nD Image Analysis},
    5875   note = {digital version available:\\\ {\small\tt http://www.ph.tn.tudelft.nl/Publications/PHDTheses/BRieger/thesis_rieger.html}},
    5876   address = {Delft, The Netherlands},
    5877   school = {Delft University of Technology},
    5878   author = {Rieger, B.}
    5879 }
    5880 @misc{Krivanek2003,
    5881   year = {2003},
    5882   title = {Autoadjusting charged-particle probe-forming apparatus},
    5883   howpublished = {US6552340},
    5884   author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.}
    5885 }
    5886 @article{Royer2000,
    5887   year = {2000},
    5888   title = {Structural hierarchy in erythrocruorin, the giant respiratory assemblage of annelids},
    5889   pages = {7107-7111},
    5890   journal = {Biochemistry},
    5891   volume = {97},
    5892   author = {Royer, W.E. Jr. and Strand, K. and Heel, M. van and Hendrickson, W.A. }
    5893 }
    5894 @article{Rieger2004b,
    5895   number = {8},
    5896   year = {2004},
    5897   title = {On curvature estimation of iso-surfaces in {3D} gray-value images and the computation of shape descriptors},
    5898   pages = {1088-1094},
    5899   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    5900   volume = {26},
    5901   author = {Rieger, B. and Timmermans, F.J. and Vliet, L.J. van and Verbeek, P.W.}
    5902 }
    5903 @article{Desbat1993,
    5904   year = {1993},
    5905   title = {Efficient Sampling on Coarse Grids in Tomography},
    5906   pages = {251--269},
    5907   journal = {Inverse Problems},
    5908   volume = {9},
    5909   annote = {key_radon},
    5910   author = {Desbat, L.}
    5911 }
    5912 @article{Goldman2002,
    5913   year = {2002},
    5914   title = {A new window on the cell's inner workings},
    5915   pages = {1155-1156},
    5916   journal = {Science},
    5917   volume = {298},
    5918   author = {Goldmann, E.}
    5919 }
    5920 @misc{WeickertYYYY,
    5921   title = {On the History of Gaussian Scale-Space Axiomatics},
    5922   annote = {Chapter 4 from something},
    5923   author = {Weickert, J. and Ishikawa, S. and Imiya, A.}
    5924 }
    5925 @article{DorphPetersen2000,
    5926   month = {November},
    5927   year = {2000},
    5928   title = {Non-Uniform Systematic Sampling in Stereology},
    5929   pages = {148--157},
    5930   journal = {Journal of Microscopy},
    5931   volume = {200, Pt 2},
    5932   author = {Dorph-Petersen, K.-A. and Gundersen, H.J.G. and Jensen, E.B.V.}
    5933 }
    5934 @article{Fernandez1997,
    5935   year = {1997},
    5936   title = {A spectral estimation approach to contrast transfer function detection in electron microscopy},
    5937   pages = {267-295},
    5938   journal = {Ultramicroscopy},
    5939   volume = {68},
    5940   author = {Feranandez, J.J. and Sanjurjo, J.R. and Carazo, J.-M.}
    5941 }
    5942 @inproceedings{Bakker2001a,
    5943   month = {May 30-june 1},
    5944   year = {2001},
    5945   title = {Analysis and detection of 3-D curvilinear structures},
    5946   booktitle = {ASCI'01 (Heijen, The Netherlands)},
    5947   pages = {35--40},
    5948   editor = {Vliet, L.J. van and Heijnsdijk, J.W.K. and Kielmann, T. and Knijnenburg, P.M.W.},
    5949   author = {Bakker, P. and Verbeek, P.W. and Vliet, L.J. van},
    5950   organization = {ASCI}
    5951 }
    5952 @article{Rodrigo2004,
    5953   number = {7},
    5954   year = {2004},
    5955   title = {Real-time interactive optical micromanipulation of a mixture of high- and low-index particles},
    5956   pages = {1417-1425},
    5957   journal = {Optics Express},
    5958   volume = {12},
    5959   author = {Rodrigo, P.J. and Daria, V.R. and {Gl\"uckstad}, J.}
    5960 }
    5961 @unpublished{Verbeek2001a,
    5962   title = {Continuous Cube to Cube Mappings as Analytic 3{D} Look-up Tables for {RGB} Color Rendering},
    5963   author = {Verbeek, P.W.}
    5964 }
    5965 @article{Rodrigo2005,
    5966   number = {7},
    5967   year = {2005},
    5968   title = {Four-dimensional optical manipulation of colloidal particles},
    5969   pages = {074103},
    5970   journal = {Applied Physics Letters},
    5971   volume = {86},
    5972   author = {Rodrigo, P.J. and Daria, V.R. and {Gl\"uckstad}, J.}
    5973 }
    5974 @inproceedings{Niblack1988,
    5975   month = {June},
    5976   year = {1988},
    5977   title = {On Improving the Accuracy of the {H}ough Transform: Theory, Simulations, and Experiments},
    5978   booktitle = {Proceedings of the IEEE Computer Society Conference CVPR (Ann-Arbor)},
    5979   pages = {574--579},
    5980   annote = {key_radon},
    5981   author = {Niblack, W. and Petkovic, D.}
    5982 }
    5983 @article{Gautier2001,
    5984   number = {6},
    5985   year = {2001},
    5986   title = {Homo-{FRET} Microscopy in Living Cells to Measure Monomer-Dimer Transition of {GFP}-Tagged Proteins},
    5987   pages = {3000-3008},
    5988   journal = {Biophysical Journal},
    5989   volume = {80},
    5990   author = {Gautier, I. and Tramier, C. and Coppey, J. and Pansu, R.B. and Nicolas, J-C. and Kemnitz, K. and Coppey-Moisan, M.}
    5991 }
    5992 @inproceedings{Nystrom2001,
    5993   series = {Lecture Notes on Computer Science},
    5994   year = {2001},
    5995   title = {Curve Skeletonization by Junction Detection in Surface Skeletons},
    5996   booktitle = {IWVF4, 4th International Workshop on Visual Form},
    5997   pages = {229--238},
    5998   editor = {Arcelli, C. and Cordella, L.P. and Sanniti di Baja, G.},
    5999   volume = {2059},
    6000   publisher = {Springer-Verlag},
    6001   author = {{Nystr\"om}, I. and Sanniti di Baja, G. and Svensson, S.}
    6002 }
    6003 @article{Cianci2004,
    6004   number = {2},
    6005   year = {2004},
    6006   title = {Saturation Modified Point Spread Functions in Two-Photon Microscopy},
    6007   pages = {135-141},
    6008   journal = {Microscopy Research and Technique},
    6009   volume = {64},
    6010   author = {Cianci, G.C. and Wu, J. and Berland, K.M.}
    6011 }
    6012 @article{Good1971,
    6013   number = {3},
    6014   month = {March},
    6015   year = {1971},
    6016   title = {The Relationship Between two Fast {Fourier} Transforms},
    6017   pages = {310--317},
    6018   journal = {IEEE Transactions on Computers},
    6019   volume = {C-20},
    6020   annote = {key_fft},
    6021   author = {Good, I.J.}
    6022 }
    6023 @manual{Ieee1987,
    6024   year = {1987},
    6025   title = {{IEEE} Standard for Radix-Independent Floating-Point Arithmetic},
    6026   note = {Std. 854-1987},
    6027   address = {Technical Committee on Microprocessors and Microcomputers of the {IEEE} Computer Society},
    6028   author = {IEEE}
    6029 }
    6030 @book{Spivak1979,
    6031   year = {1979},
    6032   title = {A Comprehensive Introduction to Differential Geometry},
    6033   volume = {2},
    6034   address = {Berkley},
    6035   publisher = {Publish or Perish},
    6036   author = {M. Spivak}
    6037 }
    6038 @inproceedings{Paeth1986,
    6039   year = {1986},
    6040   title = {A Fast Algorithm for General Raster Rotation},
    6041   booktitle = {Graphics Interface '86},
    6042   pages = {77--81},
    6043   editor = {Green, M.},
    6044   author = {Paeth, A.W.}
    6045 }
    6046 @article{Dong1998,
    6047   year = {1998},
    6048   title = {Particle Polymorphism Caused by Deletion of a Peptide Molecular Switch in a Quasiequivalent Icosahedral Virus},
    6049   pages = {6024-6033},
    6050   note = {Ultramicroscopy},
    6051   journal = {Journal of Virology},
    6052   volume = {72},
    6053   author = {Dong, X.F. and Natarajan, P. and Tihova, M. and Johnson, J.E. and Schneemann, A.}
    6054 }
    6055 @phdthesis{Barman1991,
    6056   year = {1991},
    6057   title = {Hierarchical Curvature Estimation in Computer Vision},
    6058   school = {{Link\"oping} University, Sweden},
    6059   author = {{B\aa rman}, H.}
    6060 }
    6061 @article{Zetzsche1991,
    6062   year = {1991},
    6063   title = {Direct detection of flow discontinuities by 3D curvature operators},
    6064   pages = {771--779},
    6065   journal = {Pattern Recognition Letters},
    6066   volume = {12},
    6067   author = {Zetzsche, C. and Barth, E.}
    6068 }
    6069 @inproceedings{Barman1990,
    6070   year = {1990},
    6071   title = {Estimation of Curvature in 3-{D} Images Using Tensor Field Filtering},
    6072   booktitle = {Computer Vision -- ECCV90. Proceedings, 1990},
    6073   pages = {563--565},
    6074   editor = {O. Faugeras},
    6075   publisher = {Springer-Verlag},
    6076   author = {{B\aa rman}, H. and Granlund, G. H. and Knutsson, H.}
    6077 }
    6078 @article{Minkowski1903,
    6079   year = {1903},
    6080   title = {Volumen und {Oberfl\"achen}},
    6081   pages = {447--495},
    6082   journal = {Mathematische Annalen},
    6083   author = {Minkowski, H.}
    6084 }
    6085 @book{Foley1996,
    6086   edition = {2},
    6087   year = {1996},
    6088   title = {Computer graphics, principles and practice},
    6089   address = {London},
    6090   publisher = {Addison-Wesley},
    6091   author = {Foley, J.D. and Dam, A. van and Feiner, S.K. and Hughes, J.F.}
    6092 }
    6093 @book{Boyce1986,
    6094   edition = {fourth},
    6095   year = {1986},
    6096   title = {Elementary differential equations and boundary value problems},
    6097   publisher = {John Wiley \& sons},
    6098   author = {Boyce, W.E. and DiPrima, R.C.}
    6099 }
    6100 @article{Cranage1988,
    6101   number = {726},
    6102   year = {1988},
    6103   title = {Ring Artifacts in {X}-Ray Computed Tomography},
    6104   pages = {529--529},
    6105   journal = {British Journal of Radiology},
    6106   volume = {61},
    6107   author = {Cranage, R.W. and Tofts, P.S.}
    6108 }
    6109 @inproceedings{Luengo2001,
    6110   series = {Lecture Notes on Computer Science},
    6111   year = {2001},
    6112   title = {Segmentation-Free Estimation of Length Distributions Using Sieves and RIA Morphology},
    6113   booktitle = {Proc. Third International Conference on Scale-Space},
    6114   pages = {389--406},
    6115   editor = {Kerckhove, M.},
    6116   volume = {2106},
    6117   address = {Vancouver, Canada},
    6118   publisher = {Springer-Verlag},
    6119   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    6120 }
    6121 @article{Hillyard1993,
    6122   year = {1993},
    6123   title = {Thickness effects in {ADF STEM} zone axis images},
    6124   pages = {325-334 },
    6125   journal = {Ultramicroscopy},
    6126   volume = {52},
    6127   author = {Hillyard, J. and Silcox, J.}
    6128 }
    6129 @phdthesis{Aronsson2002,
    6130   year = {2002},
    6131   title = {On 3D Fibre Measurement of Digitized Paper},
    6132   address = {Uppsala, Sweden},
    6133   school = {Swedish University of Agricultural Science},
    6134   author = {Aronsson, M.}
    6135 }
    6136 @inbook{Berkner1995,
    6137   year = {1995},
    6138   title = {Visualisierung - Dynamik und {Komplexit\"at}},
    6139   chapter = {Eine lokale Charakterisierung von Kanten basierend auf Skalierungseigenschaften von Wavelet-Transformation},
    6140   publisher = {Tagungsband Bremen},
    6141   author = {Berkner, K. and Evertsz, C.J.G. and Berghorn, W.}
    6142 }
    6143 @article{Martens1997,
    6144   number = {8},
    6145   month = {August},
    6146   year = {1997},
    6147   title = {Local Orientation Analysis in Images by Means of the Hermite Transform},
    6148   pages = {1103--1116},
    6149   journal = {IEEE Transactions on Image Processing},
    6150   volume = {6},
    6151   author = {Martens, J.B.}
    6152 }
    6153 @inproceedings{Wheeler2000,
    6154   year = {2000},
    6155   title = {Processing Color and Complex Data using Mathematical Morphology},
    6156   booktitle = {Proceedings of the IEEE, National Aerospace and Electronics Conference},
    6157   pages = {618-624},
    6158   volume = {1},
    6159   address = {Berlin},
    6160   author = {Wheeler, M. and Zmuda, M. A.}
    6161 }
    6162 @article{Svensson2002,
    6163   year = {2002},
    6164   title = {Distance transforms in 3D using four different weights},
    6165   pages = {1407--1418},
    6166   journal = {Pattern Recognition Letters},
    6167   volume = {23},
    6168   author = {Svensson, S. and Borgefors, G.}
    6169 }
    6170 @article{Mattheyses2004,
    6171   number = {4},
    6172   year = {2004},
    6173   title = {Polarized Fluorescence Resonance Energy Transfer Microscopy},
    6174   pages = {2787-2797},
    6175   journal = {Biophysical Journal},
    6176   volume = {87},
    6177   author = {Mattheyses, A.L. and Hoppe, A.D. and Axelrod, D.}
    6178 }
    6179 @phdthesis{Verveer1998b,
    6180   year = {1998},
    6181   title = {Computational and Optical Methods for Improving Resolution and Signal Quality in Fluorescence Microscopy},
    6182   type = {Thesis},
    6183   address = {Delft, The Netherlands},
    6184   school = {Technische Universiteit Delft},
    6185   author = {Verveer, P.J.}
    6186 }
    6187 @inproceedings{Illers2004a,
    6188   year = {2004},
    6189   title = {Measurement of correlated noise in images of computed radiography systems and its influence on the detective quantum efficiency},
    6190   booktitle = {Proceedings of SPIE},
    6191   address = {San Diego, California, USA},
    6192   author = {Illers, H. and Broucke, D. van den and Buhr, E.}
    6193 }
    6194 @article{Verveer1998a,
    6195   number = {26},
    6196   year = {1998},
    6197   title = {Improved Restoration from Multiple Images of a Single Object: Application to Fluorescence Microscopy},
    6198   pages = {6240-6239},
    6199   journal = {Applied Optics},
    6200   volume = {37},
    6201   author = {Verveer, P.J. and Jovin, T.M.}
    6202 }
    6203 @book{Serra1988,
    6204   year = {1988},
    6205   title = {Image Analysis and Mathematical Morphology, Volume 2: Theoretical Advances},
    6206   editor = {Serra, J.},
    6207   address = {London},
    6208   publisher = {Academic Press}
    6209 }
    6210 @article{Chen2000,
    6211   number = {5},
    6212   month = {May},
    6213   year = {2000},
    6214   title = {Orientation Space Filtering for Multiple Orientation Line Segmentation},
    6215   pages = {417--429},
    6216   journal = {Pattern Analysis and Machine Intelligence},
    6217   volume = {22},
    6218   author = {Chen, J. and Sato, Y. and Tamura, S.}
    6219 }
    6220 @article{Hestenes1994a,
    6221   number = {1},
    6222   year = {1994},
    6223   title = {Invariant Body Kinematics: {II}. Reaching and Neurogeometry},
    6224   pages = {79--88},
    6225   journal = {Neural Networks},
    6226   volume = {7},
    6227   author = {Hestenes, D.}
    6228 }
    6229 @article{Zemlin2002,
    6230   year = {2002},
    6231   title = {Diffractogram tableaux by mouse click},
    6232   pages = {77-82},
    6233   journal = {Ultramicroscopy},
    6234   volume = {93},
    6235   author = {Zemlin, J. and Zemlin, F.}
    6236 }
    6237 @inproceedings{Papoulis1976,
    6238   month = {August},
    6239   year = {1976},
    6240   title = {Topics in Signal Analysis},
    6241   booktitle = {International Conference on Information Sciences and Systems},
    6242   pages = {247--249},
    6243   address = {Patras, Greece},
    6244   author = {Papoulis, A.}
    6245 }
    6246 @techreport{Calway1991,
    6247   month = {September},
    6248   year = {1991},
    6249   title = {Incorporating Orientation Selectivity in Wavelet Transforms for Multiresolution {Fourier} Analysis of Images},
    6250   note = {LiTH-ISY-I-1243},
    6251   institution = {{Link\"oping University}},
    6252   author = {Calway, A.}
    6253 }
    6254 @article{Esa2000,
    6255   number = {2},
    6256   year = {2000},
    6257   title = {Three-dimensional spectral precision distance microscopy of chromatin nanostructures after triple-colour {DNA} labelling: a study of the {BCR} region on chromosome 22 and the {Philadelphia} chromosome},
    6258   pages = {96-105},
    6259   journal = {Journal of Microscopy},
    6260   volume = {199},
    6261   author = {Esa, A. and Edelmann, P. and Kreth, G. and Trakhtenbrot, L. and Amariglio, N. and Rechavi, G. and Hausmann, M. and Cremer, C.}
    6262 }
    6263 @article{Greenspan1992,
    6264   number = {11},
    6265   month = {November},
    6266   year = {1992},
    6267   title = {Projection-based Approach to Image Analysis: Pattern Recognition and Representation in the Position-Orientation Space},
    6268   pages = {1105--1110},
    6269   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6270   volume = {14},
    6271   author = {Greenspan, H. and Porat, M. and Zeevi, Y.Y.}
    6272 }
    6273 @article{Nakagawa1978,
    6274   number = {8},
    6275   year = {1978},
    6276   title = {A Note on the Use of Local Min and Max Operations in Digital Picture Processing},
    6277   pages = {3},
    6278   journal = {IEEE Transactions on Systems, Man and Cybernetics},
    6279   volume = {8},
    6280   author = {Nakagawa, Y. and Rosenfeld, A.}
    6281 }
    6282 @article{Lenz1987,
    6283   number = {2},
    6284   year = {1987},
    6285   title = {Optimal Filters for the Detection of Linear Patterns in 2-{D} and Higher Dimensional Images},
    6286   pages = {163--172},
    6287   journal = {Pattern Recognition},
    6288   volume = {20},
    6289   author = {Lenz, R.}
    6290 }
    6291 @book{Oppenheim1983,
    6292   year = {1983},
    6293   title = {Signals and Systems},
    6294   address = {London},
    6295   publisher = {Prentice-Hall International},
    6296   author = {Oppenheim, A.V. and Willsky, A.S. and Young, I.T.}
    6297 }
    6298 @article{Abels2005,
    6299   year = {2005},
    6300   title = {Single-Molecule Measurements of the Persistence Length of Double-Stranded {RNA}},
    6301   pages = {2737-2744},
    6302   journal = {Biophysical Journal},
    6303   volume = {88},
    6304   author = {Abels, J.A. and Moreno-Herreo, F. and Heijden, T. van der and Dekker, C. and Dekker, N.H.}
    6305 }
    6306 @inproceedings{Breton1996kort,
    6307   year = {1996},
    6308   title = {Shadows and Shading Flow Fields },
    6309   booktitle = {CVPR'96 },
    6310   pages = {782--789},
    6311   author = {Breton, P. and Zucker, S.W. }
    6312 }
    6313 @book{Tukey1977,
    6314   year = {1977},
    6315   title = {Exploratory Data Analysis},
    6316   address = {Reading, Massachusetts},
    6317   publisher = {Addison-Wesley},
    6318   author = {Tukey, J. W.}
    6319 }
    6320 @article{Rotem1986,
    6321   number = {5},
    6322   month = {October},
    6323   year = {1986},
    6324   title = {Image Reconstruction from Zero Crossings},
    6325   pages = {1269--1277},
    6326   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    6327   volume = {34},
    6328   author = {Rotem, D. and Zeevi, Y.Y.}
    6329 }
    6330 @article{Vigneau2000,
    6331   year = {2000},
    6332   title = {Number of Particles for the Determination of Size Distribution from Microscopic Images},
    6333   pages = {243--250},
    6334   journal = {Powder Technology},
    6335   volume = {107},
    6336   author = {Vigneau, E. and Loisel, C. and Devaux, M.F. and Cantoni, P.}
    6337 }
    6338 @article{Ammouche2001,
    6339   year = {2001},
    6340   title = {Image Analysis for the Automated Study of Microcracks in Concrete},
    6341   pages = {267--278},
    6342   journal = {Cement \& Concrete Composites},
    6343   volume = {23},
    6344   author = {Ammouche, A. and Riss, J. and Breysse, D. and Marchand, J.}
    6345 }
    6346 @article{Vincent1991,
    6347   number = {6},
    6348   month = {June},
    6349   year = {1991},
    6350   title = {Watersheds in Digital Spaces: An Efficient Algorithm Based on Immersion Simulations},
    6351   pages = {583--598},
    6352   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6353   volume = {13},
    6354   author = {Vincent, L. and Soille, P.}
    6355 }
    6356 @unpublished{Verbeek2002,
    6357   title = {De Relatie van {L}arkin, {B}one and {O}ldfield (2001) en Felsberg en Sommer (2001) met het vectorgradient verhaal (PWV, submitted to ICPR2002)},
    6358   author = {Verbeek, P.W.}
    6359 }
    6360 @article{Vincent1993,
    6361   number = {2},
    6362   month = {April},
    6363   year = {1993},
    6364   title = {Morphological Grayscale Reconstruction in Image Analysis: Applications and Efficient Algorithms},
    6365   pages = {176--201},
    6366   journal = {IEEE Transactions on Image Processing},
    6367   volume = {2},
    6368   author = {Vincent, L.}
    6369 }
    6370 @article{Gadella1997,
    6371   number = {1},
    6372   year = {1997},
    6373   title = {Fast algorithms for the analysis of single and double exponential decay curves with a background term. Application to time-resolved imaging microscopy},
    6374   pages = {19-39},
    6375   journal = {Bioimaging},
    6376   volume = {5},
    6377   author = {Gadella, T.W.J. jr. and Jovin, T.M.}
    6378 }
    6379 @article{Gadella1995,
    6380   number = {6},
    6381   year = {1995},
    6382   title = {Oligomerization of Epidermal Growth Factor Receptors on {A431} Cells Studied by Time-resolved Fluorescence Imaging Microscopy. {A} Stereochemical Model for Tyrosine Kinase Receptor Activation},
    6383   pages = {1543-1558},
    6384   journal = {Journal of Cell Biology},
    6385   volume = {129},
    6386   author = {Gadella, T.W.J. jr. and Jovin, T.M.}
    6387 }
    6388 @book{Matheron1975,
    6389   year = {1975},
    6390   title = {Random Sets and Integral Geometry},
    6391   address = {New York},
    6392   publisher = {Wiley},
    6393   author = {Matheron, G.}
    6394 }
    6395 @book{Weisstein1999,
    6396   year = {1999},
    6397   title = {Concise Encyclopedia of Mathematics},
    6398   publisher = {CRC},
    6399   author = {Weisstein, E.W.}
    6400 }
    6401 @article{Gadella1994,
    6402   number = {3},
    6403   year = {1994},
    6404   title = {Fluorescence lifetime imaging microscopy: Pixel-by-pixel analysis of phase-modulation data},
    6405   pages = {139-159},
    6406   journal = {Bioimaging},
    6407   volume = {2},
    6408   author = {Gadella, T.W.J. jr. and Clegg, R.M. and Jovin, T.M.}
    6409 }
    6410 @article{Kratky1949,
    6411   year = {1949},
    6412   title = {{R\"ontgenuntersuchungen gel\"oster Fadenmolek\"ule}},
    6413   pages = {1106-1124},
    6414   journal = {Rec. Trav. Chim. Pays-Bas Belg},
    6415   volume = {68},
    6416   author = {Kratky, O. and Porod, G.}
    6417 }
    6418 @article{Maragos1996,
    6419   number = {6},
    6420   year = {1996},
    6421   title = {Differential Morphology and Image Processing},
    6422   pages = {922-937},
    6423   journal = {IEEE Transactions on Image Processing},
    6424   volume = {5},
    6425   author = {Maragos, Petros}
    6426 }
    6427 @inproceedings{Leavers2000,
    6428   month = {September 3-7},
    6429   year = {2000},
    6430   title = {Analysis of Wear Particles Using the Radon Transform},
    6431   booktitle = {ICPR15, Proc. 15th Int. Conference on Pattern Recognition (Barcelona, Spain)},
    6432   pages = {764--766},
    6433   editor = {Sanfeliu, A. and Villanueva, J.J. and Vanrell, M. and Alquezar, R. and Huang, T. and Serra, J. },
    6434   annote = {key_radon},
    6435   publisher = {IEEE Computer Society Press, Los Alamitos },
    6436   author = {Leavers, V.F.}
    6437 }
    6438 @article{Cosgriff2005,
    6439   year = {2005},
    6440   title = {The spatial resolution of imaging using core-loss spectroscopy in the scanning transmission electron microscope},
    6441   pages = {317-326},
    6442   journal = {Ultramicroscopy},
    6443   volume = {102},
    6444   author = {Cosgriff, E.C. and Oxley, M.P. and Allen, L.J. and Pennycock, S.J.}
    6445 }
    6446 @phdthesis{Freeman1992,
    6447   year = {1992},
    6448   title = {Steerable Filters and Local Analysis of Image Structure},
    6449   school = {Massachusetts Institute of Technology},
    6450   author = {Freeman, W.T.}
    6451 }
    6452 @article{Freeman1991,
    6453   number = {9},
    6454   month = {September},
    6455   year = {1991},
    6456   title = {The Design and Use of Steerable Filters},
    6457   pages = {891--906},
    6458   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6459   volume = {13},
    6460   author = {Freeman, W.T. and Adelson, E.H.}
    6461 }
    6462 @inproceedings{Lindeberg1993a,
    6463   month = {May},
    6464   year = {1993},
    6465   title = {On Scale Selection for Differential Operators},
    6466   booktitle = {Proc. 8th Scandinavian Conference on Image Analysis ({Troms\o} Norway)},
    6467   pages = {857--866},
    6468   author = {Lindeberg, T.}
    6469 }
    6470 @inproceedings{Lindeberg1993b,
    6471   year = {1993},
    6472   title = {Shape from texture from a multi-scale perspective},
    6473   booktitle = {Proceeding of the 4th International Conference on Computer Vision},
    6474   address = {Berlin, Germany},
    6475   author = {Lindeberg, T. and {G\aa rding}, J.}
    6476 }
    6477 @misc{DIPimage,
    6478   year = {1999-},
    6479   title = {{DIPimage}: a scientific image processing toolbox for {MATLAB}},
    6480   note = {Delft University of Technology, {\tt http://www.qi.tnw.tudelft.nl/DIPlib}},
    6481   author = {Luengo Hendriks, C.L. and Rieger, B. and Ginkel, M. van and Kempen, G.M.P. van and Vliet, L.J. van}
    6482 }
    6483 @inproceedings{Yu1998,
    6484   month = {June 23-25},
    6485   year = {1998},
    6486   title = {Rotated Wedge Averaging Method for Junction Characterization},
    6487   booktitle = {Proc. Computer Society Conference on Computer Vision and Pattern Recognition, CVPR'98, Santa Barbara, USA},
    6488   pages = {390--395},
    6489   author = {Yu, W. and Daniilidis, K. and Sommer, G.}
    6490 }
    6491 @book{Klotzek,
    6492   year = {1994},
    6493   title = {{Einf\"uhrung} in die Differentialgeometrie},
    6494   address = {Thun, Frankfurt am Main},
    6495   publisher = {Verlag Harri Deutsch},
    6496   author = {Benno Klotzek}
    6497 }
    6498 @article{Sprague2005,
    6499   number = {2},
    6500   year = {2005},
    6501   title = {{FRAP} analysis of binding: proper and fitting},
    6502   pages = {84-91},
    6503   journal = {Trends in Cell Biology},
    6504   volume = {15},
    6505   author = {Sprague, B.L. and McNally, J.G.}
    6506 }
    6507 @article{Maragos1994,
    6508   number = {1},
    6509   year = {1994},
    6510   title = {Morphological Systems: Slope Transforms and Max-Min Difference and Differential Equations},
    6511   pages = {57-77},
    6512   journal = {Signal Processing},
    6513   volume = {38},
    6514   author = {Maragos, Petros}
    6515 }
    6516 @article{Sprague2004,
    6517   month = {June},
    6518   year = {2004},
    6519   title = {Analysis of Binding Reactions by Fluorescence Recovery after Photobleaching},
    6520   pages = {3473-3495},
    6521   journal = {Biophysical Journal},
    6522   volume = {86},
    6523   author = {Sprague, B.L. and Pego, R.L. and Stavreva, D.A. and McNally, J.G.}
    6524 }
    6525 @phdthesis{Westerweel1993,
    6526   year = {1993},
    6527   title = {Digital particle image velocimetry - theory and application},
    6528   address = {Delft, The Netherlands},
    6529   school = {Delft University of Technology},
    6530   author = {Westerweel, J.}
    6531 }
    6532 @article{Marek2005,
    6533   number = {2},
    6534   year = {2005},
    6535   title = {Interactive Measurement and Characterization of {DNA} Molecules by Analysis of {AFM} Images},
    6536   pages = {87-93},
    6537   journal = {Cytometry Part A},
    6538   volume = {63},
    6539   author = {Marek, J. and Demj\'enov\'a and Tomori, Z. and Jan\'a\v{c}ek, J. and Zolotov\'a, I. and Valle, F. and Farve, M. and Dietler, G.}
    6540 }
    6541 @book{Smith2000,
    6542   edition = {thrid},
    6543   year = {2000},
    6544   title = {Modern Optical Engenering},
    6545   address = {New York},
    6546   publisher = {McGraw-Hill},
    6547   author = {Smith, W.J.}
    6548 }
    6549 @article{Nirmal1996,
    6550   number = {6603},
    6551   year = {1996},
    6552   title = {Fluorescience intermittency in single cadmium selenide nanocrystals},
    6553   pages = {802-805},
    6554   journal = {Nature},
    6555   volume = {383},
    6556   author = {Nirmal, M. and Dabbausi, B.O. and Bawendi, M.G. and Macklin, J.J. and Trautman, J.K. and Harris, T.D. and Brus, L.E.}
    6557 }
    6558 @article{Grillo2006,
    6559   year = {2006},
    6560   title = {A novel method for focus assessment in atomic resolution {STEM HAADF} experiments},
    6561   pages = {603-613},
    6562   journal = {Ultramicrosocpy},
    6563   volume = {106},
    6564   author = {Grillo, V. and Carlino, E.}
    6565 }
    6566 @article{Heine1961,
    6567   number = {1},
    6568   year = {1961},
    6569   title = {Eine verfeinerte {Theorie} der {R\"ontgenkleinwinkelstreuung} des {verkn\"auelten} {Fadenmolek\"uls} und ihre {Anwendung} auf {Cellulosenitrat} in {L\"o}sung},
    6570   pages = {682-726},
    6571   journal = {Macromolecular Chemistry and Physics},
    6572   volume = {44},
    6573   author = {Heine, S. von and Kratky, O. and Porod, G. and Schmitz, P.J.}
    6574 }
    6575 @incollection{Hilditch1969,
    6576   year = {1969},
    6577   title = {Linear skeletons from square cupboards},
    6578   booktitle = {Machine Intelligence},
    6579   pages = {404--420},
    6580   editor = {{Meltzer B. and Mitchie D.}},
    6581   publisher = {University Press Edinburgh},
    6582   author = {Hilditch, C.J.}
    6583 }
    6584 @article{Subramaniam2003,
    6585   year = {2003},
    6586   title = {Photophysics of green and red fluorescent proteins: some implications for quantitative microscopy},
    6587   pages = {178-201},
    6588   journal = {Methods in Enzymology.},
    6589   volume = {360},
    6590   author = {Subramaniam, V. and Hanley, Q.S. and Clayton, A.H.A. and Jovin, T.M.}
    6591 }
    6592 @article{Brink1998a,
    6593   year = {1998},
    6594   title = {Evaluation of charing on macromolecules in electron mircoscopy},
    6595   pages = {41-52},
    6596   journal = {Ultamicroscopy},
    6597   volume = {72},
    6598   author = {Brink, J. and Sherman, M.B. and Berrniman, J. and Chiu, W.}
    6599 }
    6600 @inproceedings{Ginkel1997,
    6601   month = {June 9-11},
    6602   year = {1997},
    6603   title = {Orientation Selectivity for Orientation Estimation},
    6604   booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)},
    6605   pages = {533--537},
    6606   volume = {I},
    6607   author = {Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van}
    6608 }
    6609 @mastersthesis{Ginkel1995,
    6610   month = {August},
    6611   year = {1995},
    6612   title = {Diffusion Generated Scale-space for Blob Analysis},
    6613   address = {Delft, The Netherlands},
    6614   school = {Delft University of Technology},
    6615   author = {Ginkel, M. van}
    6616 }
    6617 @inproceedings{Ginkel1998,
    6618   month = {June 9-11},
    6619   year = {1998},
    6620   title = {Curvature Estimation for Overlapping Curved Patterns using Orientation Space},
    6621   booktitle = {Proceedings of the third annual conference of the Advanced School for Computing and Imaging (Lommel, Belgium)},
    6622   pages = {173--178},
    6623   editor = {Haar Romeny, B. ter and Epema, D.H.J. and Tonino, J.F.M.},
    6624   author = {Ginkel, M. van and Verbeek, P.W. and van Vliet, L.J.}
    6625 }
    6626 @inproceedings{Ginkel1999,
    6627   month = {June 7-11},
    6628   year = {1999},
    6629   title = {Curvature Estimation from Orientation Fields},
    6630   booktitle = {SCIA'99, Proc. 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland)},
    6631   pages = {545--551},
    6632   editor = {Ersboll, B.K. and Johansen, P.},
    6633   author = {Ginkel, M. van and Weijer, J. van de and Verbeek, P.W. and Vliet, L.J. van},
    6634   organization = {Pattern Recognition Society of Denmark, Lyngby}
    6635 }
    6636 @inproceedings{Bakker1999a,
    6637   year = {1999},
    6638   title = {Edge preserving orientation adaptive filtering},
    6639   booktitle = {ASCI'99, Proc. 5th Annual Conference of the Advanced School for C omputing and Imaging (Heijen, The Netherlands)},
    6640   pages = {207--213},
    6641   editor = {Boasson, M. and Kaandorp, J.A. and Tonino, J.F.M. and Vosselman, M.G.},
    6642   author = {Bakker, P. and Verbeek, P.W. and Vliet, L.J. van},
    6643   organization = {ASCI, Delft}
    6644 }
    6645 @article{Mecke1996,
    6646   number = {5},
    6647   month = {May},
    6648   year = {1996},
    6649   title = {Morphological Characterization of Patterns in Reaction-Diffusion Systems},
    6650   pages = {4794--4800},
    6651   journal = {Physical Review {E}},
    6652   volume = {53},
    6653   author = {Mecke, K.R.}
    6654 }
    6655 @article{Lawton1992,
    6656   number = {3},
    6657   month = {July},
    6658   year = {1992},
    6659   title = {Multidimensional Chirp Algorithms for Computing {Fourier} Transforms},
    6660   pages = {429--431},
    6661   journal = {IEEE Transactions on Image Processing},
    6662   volume = {1},
    6663   annote = {key_fft},
    6664   author = {Lawton, W.M.}
    6665 }
    6666 @article{Pratt1972,
    6667   year = {1972},
    6668   title = {Generalized {Wiener} filtering computation techniques},
    6669   pages = {297--303},
    6670   journal = {IEEE Trans. Comput.},
    6671   volume = {C-21},
    6672   author = {Pratt, W.K.}
    6673 }
    6674 @article{Zhu2004,
    6675   year = {2004},
    6676   title = {Automatic particle selection: results of a comparative study},
    6677   pages = {3-14},
    6678   journal = {Journal of Structural Biology},
    6679   volume = {145},
    6680   author = {Zhu, Y. and Carragher, B. and Glaeser, R.M. and Fellmann, D. and Bajaj, C. and Bern, M. and Mouche, F. and Haas, F. de and Hall, R.J. and Kriegman, D.J. and Ludtke, S.J. and Mallick, S.P. and Penczek, P.A. and Roseman, A.M. and Sigworth, F.J. and Volkmann, N. and Potter, C.S.}
    6681 }
    6682 @article{Breen1996a,
    6683   number = {3},
    6684   year = {1996},
    6685   title = {Attribute Openings, Thinnings, and Granulometries},
    6686   pages = {377-389},
    6687   journal = {Computer Vision and Image Understanding},
    6688   volume = {64},
    6689   author = {Breen, E. J. and Jones, R.}
    6690 }
    6691 @article{Funaro2003,
    6692   number = {4},
    6693   year = {2003},
    6694   title = {Independent component analysis for artefact separation in astrophysical images},
    6695   pages = {469-478},
    6696   journal = {Neural Networks},
    6697   volume = {16},
    6698   author = {Funaro, M. and Oja, E. and Valpula, H.}
    6699 }
    6700 @article{Lehmann1997,
    6701   year = {1997},
    6702   title = {A Simple Parametric Equation for Pseudocoloring Grey Scale Images Keeping their Original Brightness Progression},
    6703   pages = {251--257},
    6704   journal = {Image and Vision Computing},
    6705   volume = {15},
    6706   author = {Lehmann, T.M. and Kaser, A. and Repges, R.}
    6707 }
    6708 @inproceedings{Michaelis1994,
    6709   month = {May},
    6710   year = {1994},
    6711   title = {Junction Classification by Multiple Orientation Detection},
    6712   booktitle = {ECCV'94, Third European Conference on Computer Vision},
    6713   pages = {101--108},
    6714   editor = {Eklundh, Jan-Olof},
    6715   address = {Stockholm, Sweden},
    6716   author = {Michaelis, M. and Sommer, G.}
    6717 }
    6718 @article{Ginneken2000,
    6719   number = {2},
    6720   year = {2000},
    6721   title = {Applications of Locally Orderless Images},
    6722   pages = {196--208},
    6723   journal = {Journal of Visual Communication and Image Representation},
    6724   volume = {11},
    6725   author = {Ginneken, B. van and Haar Romeny, B.M. ter}
    6726 }
    6727 @article{Michaelis1995,
    6728   year = {1995},
    6729   title = {A Lie Group Approach to Steerable Filters},
    6730   pages = {1165--1174},
    6731   journal = {Pattern Recognition Letters},
    6732   volume = {16},
    6733   author = {Michaelis, M. and Sommer, G.}
    6734 }
    6735 @article{Brink1998,
    6736   number = {1},
    6737   year = {1998},
    6738   title = {Reduction of charging in protein electron cryomicroscopy},
    6739   pages = {67-73},
    6740   journal = {Journal of Microscopy},
    6741   volume = {191},
    6742   author = {Brink, J. and Gross, H. and Tittmann, P. and Sherman, M.B. and Chiu, W.}
    6743 }
    6744 @article{Cowley1986,
    6745   year = {1966},
    6746   title = {Greatly defocused, point-projection, off-axis electron holographyy},
    6747   pages = {133-147},
    6748   journal = {Ultramicroscopy},
    6749   volume = {63},
    6750   author = {Cowley, J.M. and Mankos, M. and Scheinfein, M.R.}
    6751 }
    6752 @article{Hutchison2005,
    6753   year = {2005},
    6754   title = {A versatile double aberration-corrected, energy filtered {HREM/STEM} for materials science},
    6755   pages = {7-15},
    6756   journal = {Ultramicroscopy},
    6757   volume = {103},
    6758   author = {Hutchison, J.L. and Titchmarsh, J.M. and Cockayne, D.J.H. and Doole, R.C. and Hetherington, C.J.D. and Kirkland, A.I. and Sawada, H.}
    6759 }
    6760 @article{Bergholm1987,
    6761   number = {6},
    6762   month = {November},
    6763   year = {1987},
    6764   title = {Edge Focusing},
    6765   pages = {726--741},
    6766   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6767   volume = {9},
    6768   author = {Bergholm, F.}
    6769 }
    6770 @article{Axelrod1989,
    6771   year = {1989},
    6772   title = {Fluorescence Polarization Microscopy},
    6773   pages = {333-352},
    6774   journal = {Methods in Cell Biology},
    6775   volume = {30},
    6776   author = {Axelrod, D.}
    6777 }
    6778 @article{Heideman1992,
    6779   number = {1},
    6780   month = {January},
    6781   year = {1992},
    6782   title = {Computation of an Odd-Length DCT from a Real-Valued DFT of the Same Length},
    6783   pages = {54--61},
    6784   journal = {IEEE Transactions on Signal Processing},
    6785   volume = {40},
    6786   annote = {key_fft},
    6787   author = {Heideman, M.T.}
    6788 }
    6789 @article{Nagao1979,
    6790   year = {1979},
    6791   title = {Edge Preserving Smoothing},
    6792   pages = {394--407},
    6793   journal = {Computer Graphics and Image Processing},
    6794   volume = {9},
    6795   author = {Nagao, M. and Matsuyama, T.}
    6796 }
    6797 @article{Aguado2000,
    6798   number = {1},
    6799   year = {2000},
    6800   title = {Bias Error Analysis of the Generalised {Hough} Transform},
    6801   pages = {25--42},
    6802   journal = {Journal of Mathematical Imaging and Vision},
    6803   volume = {12},
    6804   author = {Aguado, A.S. and Montiel, E. and Nixon, M.S.}
    6805 }
    6806 @article{Lin2000,
    6807   month = {221-231},
    6808   year = {2000},
    6809   title = {Pore Structure and network analysis of filter cake},
    6810   journal = {Chemical Engineering Journal},
    6811   volume = {80},
    6812   author = {Lin, C.L. and Miller, J.D.}
    6813 }
    6814 @phdthesis{Lin2003,
    6815   year = {2003},
    6816   title = {Enhancement, Extraction, and Visualization of {3D} Volume Data},
    6817   school = {{Link\"oping University}, Sweden},
    6818   author = {Lin, Q.}
    6819 }
    6820 @article{Jackway1996,
    6821   number = {1},
    6822   month = {January},
    6823   year = {1996},
    6824   title = {Scale-Space Properties of the Multiscale Morphological Dilation-Erosion},
    6825   pages = {38--51},
    6826   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6827   volume = {18},
    6828   author = {Jackway, Paul T. and Deriche, Mohamed}
    6829 }
    6830 @article{Sederberg1984,
    6831   number = {1},
    6832   year = {1984},
    6833   title = {Implicit Representation of Parametric Curves and Surfaces},
    6834   pages = {72--84},
    6835   journal = {Computer Vision, Graphics, and Image Processing},
    6836   volume = {28},
    6837   author = {Sederberg, T.W. and Anderson, D.C. and Goldman, R.N.}
    6838 }
    6839 @article{Jackway1998,
    6840   number = {3},
    6841   year = {1998},
    6842   title = {On the Scale-Space Theorem of Chen and Yan},
    6843   pages = {351-352},
    6844   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6845   volume = {20},
    6846   author = {Jackway, Paul T.}
    6847 }
    6848 @article{Zimmermann2002,
    6849   number = {2},
    6850   year = {2002},
    6851   title = {Spectral imaging and linear un-mixing enables improved {FRET} effciency with a novel {GFP2-YFP FRET} pair},
    6852   pages = {245-249},
    6853   journal = {FEBS Letters},
    6854   volume = {531},
    6855   author = {Zimmermann, T. and Rietdorf, J. and Girod, A. and Georget, V. and Pepperkok, R.}
    6856 }
    6857 @article{Zimmermann2003,
    6858   number = {1},
    6859   year = {2003},
    6860   title = {Spectral imaging and its application in live cell microscopy},
    6861   pages = {87-92},
    6862   journal = {FEBS Letters},
    6863   volume = {546},
    6864   author = {Zimmermann, T. and Rietdorf, J. and Pepperkok, R.}
    6865 }
    6866 @article{Fischl1999,
    6867   number = {NO. 1},
    6868   year = {1999},
    6869   title = {Adaptive Nonlocal Filtering: A Fast Alternative to Anisotropic Diffusion for Image Enhancement},
    6870   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6871   volume = {VOL. 21},
    6872   author = {Fischl, B. and Schwartz, E.L.}
    6873 }
    6874 @article{Reed1990,
    6875   number = {1},
    6876   month = {January},
    6877   year = {1990},
    6878   title = {Segmentation of Textured Images and Gestalt Organization Using Spatial/Spatial-Frequency Representations},
    6879   pages = {1--12},
    6880   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    6881   volume = {12},
    6882   author = {Reed, T.R. and Wechsler, H.}
    6883 }
    6884 @article{Reed1999,
    6885   month = {August},
    6886   year = {1999},
    6887   title = {Stereological Estimation of Covariance using Linear Dipole Probes},
    6888   pages = {96--103},
    6889   journal = {Journal of Microscopy},
    6890   volume = {195, Pt 2},
    6891   author = {Reed, M.G. and Howard, C.V.}
    6892 }
    6893 @article{Hell1994a,
    6894   number = {11},
    6895   year = {1994},
    6896   title = {Breaking the diffraction limit resolution by stimulated emission: stimulated-emission-depletion microscopy},
    6897   pages = {780-783},
    6898   journal = {Optics Letters},
    6899   volume = {19},
    6900   author = {Hell, S.W. and Wichmann, J.}
    6901 }
    6902 @article{Nicholson2001,
    6903   year = {2001},
    6904   title = {Review: Automatic Particle Detection in Electron Microscopy},
    6905   pages = {90-101},
    6906   journal = {Journal of Structural Biology},
    6907   volume = {133},
    6908   author = {Nicholson, W.V. and Glaser, R.M.}
    6909 }
    6910 @inproceedings{Glas2001,
    6911   series = {Lecture Notes on Computer Science},
    6912   year = {2001},
    6913   title = {Assessment of Center of Rotation of the Glenohumeral Joint by a Modified {H}ough Transform},
    6914   booktitle = {4th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001, Utrecht, The Netherlands},
    6915   editor = {Niessen, W.J. and Viergever, M.A.},
    6916   volume = {2208},
    6917   annote = {key_radon},
    6918   author = {Glas, M. van der and Vos, F.M. and Vossepoel, A.M.}
    6919 }
    6920 @article{Danielsson2001,
    6921   year = {2001},
    6922   title = {Efficient Detection of Second-Degree Variations in {2D} and {3D} Images},
    6923   pages = {255--305},
    6924   journal = {Journal of Visual Communication and Image Representation},
    6925   volume = {12},
    6926   author = {Danielsson, P.-E. and Lin, Q. and Ye, Q.-Z.}
    6927 }
    6928 @article{Dirac1927,
    6929   year = {1927},
    6930   title = {The Physical Interpretation of the Quantum Dynamics},
    6931   pages = {621-641},
    6932   journal = {Proceedings of the Royal Society of London},
    6933   volume = {A113},
    6934   author = {Dirac, P.}
    6935 }
    6936 @techreport{Danielsson2000,
    6937   month = {October},
    6938   year = {2000},
    6939   title = {A New Shape Space for Second Order 3D-Variations},
    6940   note = {LiTH-ISY-R-2299},
    6941   institution = {{Link\"oping} University, Sweden},
    6942   author = {Danielsson,P.-E. and Lin, Q.}
    6943 }
    6944 @article{Otten1993,
    6945   year = {1993},
    6946   title = {High-resolution imaging on a field emission {TEM}},
    6947   pages = {77-91},
    6948   journal = {Ultramicroscopy},
    6949   volume = {48},
    6950   author = {Otten, M.T. and Coene, W.M.J.}
    6951 }
    6952 @article{Nelson2006,
    6953   year = {2006},
    6954   title = {Tethered Particle Motion as a Diagnostic of {DNA} Tether Length},
    6955   journal = {Journal of Physical Chemistry B},
    6956   author = {Nelson, P.C. and Zurla, C. and Brogioli, D. and Beausang, J.F. and Finzi, L. and Dunlap, D.}
    6957 }
    6958 @article{Ballester2001,
    6959   number = {8},
    6960   month = {August},
    6961   year = {2001},
    6962   title = {Filling-In by Joint Interpolation of Vector Fields and Gray Levels},
    6963   pages = {1200-1211},
    6964   journal = {IEEE Transactions on Image Processing},
    6965   volume = {10},
    6966   author = {Ballerster, C. and Bertalmio, M. and Caselles, V. and Sapiro, G. and Verdera, J.}
    6967 }
    6968 @inbook{Kohonen1995a,
    6969   series = {Springer Series in Information Sciences},
    6970   year = {1995},
    6971   title = {Self-Organizing Maps},
    6972   volume = {30},
    6973   chapter = {5.8--5.10},
    6974   publisher = {Springer-Verlag},
    6975   author = {Kohonen, T.}
    6976 }
    6977 @article{Saff1997,
    6978   number = {1},
    6979   year = {1997},
    6980   title = {Distributing Many Points on a Sphere},
    6981   pages = {5--11},
    6982   journal = {the Mathematical Intelligencer},
    6983   volume = {19},
    6984   author = {Saff, E.B. and Kuijlaars, A.B.J.}
    6985 }
    6986 @article{Johansen2000,
    6987   number = {3},
    6988   year = {2000},
    6989   title = {Branch Points in One-Dimensional {Gaussian} Scale Space},
    6990   pages = {193--203},
    6991   journal = {Journal of Mathematical Imaging and Vision},
    6992   volume = {13},
    6993   author = {Johansen, P. and Nielsen, M. and Olsen, O.F.}
    6994 }
    6995 @techreport{Lieshout1997,
    6996   year = {1997},
    6997   title = {Size Distributions in Stochastic Geometry},
    6998   note = {PNA-R9715},
    6999   institution = {CWI, Amsterdam},
    7000   author = {Lieshout, M.N.M. van}
    7001 }
    7002 @article{Raven1998,
    7003   number = {8},
    7004   year = {1998},
    7005   title = {Numerical Removal of Ring Artefacts in Microtomography},
    7006   pages = {2978--2980},
    7007   journal = {Review of Scientific Instruments},
    7008   volume = {69},
    7009   author = {Raven, C.}
    7010 }
    7011 @book{Spivak1965,
    7012   year = {1965},
    7013   title = {Calculus on Manifolds},
    7014   address = {Cambridge, MA},
    7015   publisher = {Perseus Books},
    7016   author = {Spivak, M.}
    7017 }
    7018 @article{Prabhat2004,
    7019   number = {4},
    7020   year = {2004},
    7021   title = {Simultaneous imaging of different focal planes in fluorescence microscopy for the study of cellular dynamics in three dimensions},
    7022   pages = {237-242},
    7023   journal = {IEEE Transactions on Nanobioscience},
    7024   volume = {3},
    7025   author = {Prabhat, P. and Ram, S. and Ward, E.S. and Ober, R.J.}
    7026 }
    7027 @article{Meijster2002,
    7028   number = {4},
    7029   month = {April},
    7030   year = {2002},
    7031   title = {A Comparison of Algorithms for Connected Set Openings and Closings},
    7032   pages = {484--494},
    7033   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7034   volume = {24},
    7035   author = {Meijster, Arnold and Wilkinson, Michael H.F.}
    7036 }
    7037 @article{Venkatesh1990,
    7038   month = {May},
    7039   year = {1990},
    7040   title = {On the Classification of Image Features},
    7041   pages = {339--349},
    7042   journal = {Pattern Recognition Letters},
    7043   volume = {11},
    7044   author = {Venkatesh, S. and Owens, R.}
    7045 }
    7046 @article{Nummiaro2002,
    7047   number = {1},
    7048   year = {2003},
    7049   title = {An Adaptive Color-Based Particle Filter},
    7050   pages = {99-110},
    7051   journal = {Image and Vision Computing},
    7052   volume = {21},
    7053   author = {Nummiaro, K. and Koller-Meier, E. and Gool, L. van}
    7054 }
    7055 @mastersthesis{Asselt1997,
    7056   year = {1997},
    7057   title = {Line and Edge Characterisation Using Mallat Wavelets},
    7058   address = {Delft},
    7059   school = {Pattern Recognition Group, Faculty of Applied Physics, Delft University of Technology},
    7060   author = {Asselt, R.J. van}
    7061 }
    7062 @article{Grecco2005,
    7063   number = {3},
    7064   year = {2004},
    7065   title = {Ensemble and single particle photophysical properties (two-photon excitation, anisotropy, {FRET}, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells},
    7066   pages = {169-179},
    7067   journal = {Microscopy Research and Technique},
    7068   volume = {65},
    7069   author = {Grecco, H. and Lidke, K.A. and Heintzmann, R. and Lidke, D.S. and Spagnuolo, C. and Martinez, O.E. and Jares-Erijman, E.A. and Jovin, T.M.}
    7070 }
    7071 @article{Goshtasby1994,
    7072   number = {4},
    7073   month = {May},
    7074   year = {1994},
    7075   title = {On Edge Focusing},
    7076   pages = {247--256},
    7077   journal = {Image and Vision Computing},
    7078   volume = {12},
    7079   author = {Goshtasby, A.}
    7080 }
    7081 @article{Kadyrov2001,
    7082   number = {8},
    7083   year = {2001},
    7084   title = {The Trace transform and its applications },
    7085   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7086   volume = {23},
    7087   annote = {key_radon},
    7088   author = {Kadyrov, A. and Petrou, M. }
    7089 }
    7090 @misc{Vliet2003,
    7091   month = {May},
    7092   year = {2003},
    7093   howpublished = {private communications},
    7094   author = {Vliet, L.J. van and Rieger, B.}
    7095 }
    7096 @article{Harscher1996,
    7097   year = {1996},
    7098   title = {Experimental study of amplitude and phase detection limits in electron holography},
    7099   pages = {57-66},
    7100   journal = {Ultramicroscopy},
    7101   volume = {64},
    7102   author = {Harscher, A. and Lichte, H.}
    7103 }
    7104 @inproceedings{Vliet2004,
    7105   month = {Cambridge, UK, August 23-26},
    7106   year = {2004},
    7107   title = {Robust Local Max-Min Filters by Normalized Power-Weighted Filtering},
    7108   booktitle = {ICPR17, Proceedings 17th International Conference on Pattern Recognition},
    7109   pages = {696-699},
    7110   editor = {Kittler,J. and Petrou, M. and Nixon, M.},
    7111   address = {Los Alamitos},
    7112   publisher = {IEEE Computer Society Press},
    7113   author = {Vliet, L.J. van}
    7114 }
    7115 @inproceedings{Knutsson1983b,
    7116   month = {October},
    7117   year = {1983},
    7118   title = {Texture Analysis using Two-Dimensional Quadrature Filters},
    7119   booktitle = {IEEE Computer Society Workshop on Computer Architecture for Pattern Analysis and Image Database Management},
    7120   address = {Pasadena},
    7121   author = {Knutsson, H. and Granlund, G.H.}
    7122 }
    7123 @article{Knutsson1983a,
    7124   number = {3},
    7125   month = {March},
    7126   year = {1983},
    7127   title = {Anisotropic Non-Stationary Image Estimation and its Applications --- {P}art {II}: {P}redictive Image Coding},
    7128   pages = {398--406},
    7129   journal = {IEEE Transactions on Communications},
    7130   volume = {31},
    7131   author = {Knutsson, H. and Wilson, R. and Granlund, G.H.}
    7132 }
    7133 @article{Vakman1996,
    7134   number = {4},
    7135   month = {April},
    7136   year = {1996},
    7137   title = {On the Analytic Signal, the {Teager--Kaiser} Energy Algorithm, and Other Methods for Defining Amplitude and Frequency},
    7138   pages = {791--797},
    7139   journal = {IEEE Transactions on Signal Processing},
    7140   volume = {44},
    7141   author = {Vakman, D.}
    7142 }
    7143 @article{Jepson1991,
    7144   number = {5},
    7145   month = {October},
    7146   year = {1991},
    7147   title = {Phase Singularities in Scale-space},
    7148   pages = {338--343},
    7149   journal = {Image and Vision Computing},
    7150   volume = {9},
    7151   author = {Jepson, A.D. and Fleet, D.J.}
    7152 }
    7153 @article{Hanley1999,
    7154   number = {53},
    7155   year = {1999},
    7156   title = {Spectral imaging in a programmable array microscope by Hadamard transform fluorescence spectroscopy},
    7157   pages = {1-10},
    7158   journal = {Applied Spectroscopy},
    7159   author = {Hanley, Q.S. and Verveer, P.J. and Jovin, T.M.}
    7160 }
    7161 @inproceedings{Jepson1990,
    7162   year = {1990},
    7163   title = {Scale-Space Singularities},
    7164   booktitle = {Computer Vision -- ECCV90. Proceedings, 1990},
    7165   pages = {50--55},
    7166   editor = {O. Faugeras},
    7167   publisher = {Springer-Verlag},
    7168   author = {Jepson, A.D. and Fleet, D.J.}
    7169 }
    7170 @article{Jones1996,
    7171   number = {10},
    7172   year = {1996},
    7173   title = {Periodic Lines: Definition, Cascades, and Application to Granulometries},
    7174   pages = {1057--1063},
    7175   journal = {Pattern Recognition Letters},
    7176   volume = {17},
    7177   author = {Jones, Ronald and Soille, Pierre}
    7178 }
    7179 @inproceedings{Rutovitz1968,
    7180   year = {1968},
    7181   title = {Datastructures for operations on digital images},
    7182   booktitle = {Pictorial Pattern Recognition},
    7183   pages = {105--133},
    7184   editor = {Cheng, G.C. and Ledley, R.S. and Pollock, D.K. and Rosenfeld, A.},
    7185   address = {Washington, DC},
    7186   publisher = {Thompson},
    7187   author = {Rutovitz, D.}
    7188 }
    7189 @inproceedings{Lucas1981,
    7190   month = {August},
    7191   year = {1981},
    7192   title = { An Iterative Image Registration Technique with an Application to Stereo Vision},
    7193   booktitle = {Proceedings of the Seventh Int. Conf. on Artificial Intelligence},
    7194   pages = {674--679},
    7195   editor = {P.J. Hayes},
    7196   address = {Vancouver, B.C., Canada},
    7197   publisher = {William Kaufmann},
    7198   author = {Lucas, B.D. and Kanade, T.}
    7199 }
    7200 @phdthesis{Toft1996,
    7201   month = {June},
    7202   year = {1996},
    7203   title = {The Radon Transform - Theory and Implementation},
    7204   address = {Department of Mathematical Modeling, Denmark},
    7205   annote = {key_radon},
    7206   school = {Technical University of Denmark},
    7207   author = {Toft, P.}
    7208 }
    7209 @article{Sapiro1993,
    7210   number = {9},
    7211   year = {1993},
    7212   title = {Implementing Continuous-Scale Morphology via Curve Evolution},
    7213   pages = {1363--1372},
    7214   journal = {Pattern Recognition},
    7215   volume = {26},
    7216   author = {Sapiro, G. and Kimmel, R. and Shaked, D. and Kimia, B. and Bruckstein, A.M.}
    7217 }
    7218 @article{Kanmani1993,
    7219   month = {April},
    7220   year = {1993},
    7221   title = {On the Computation of the Minkowski Dimension using Morphological Operations},
    7222   pages = {81--85},
    7223   journal = {Journal of Microscopy},
    7224   volume = {170, Pt 1},
    7225   author = {Kanmani, S. and Babu Rao, C. and Raj, B.}
    7226 }
    7227 @article{Zhao2004,
    7228   year = {2004},
    7229   title = {Morphological variation of individual Escherichia coli {50S} ribosomal subunits in situ, as revealed by cryo-electron tomography},
    7230   pages = {190-201},
    7231   journal = {Experimental Cell Research},
    7232   volume = {300},
    7233   author = {Zhao, Q. and {\"Ofverstedt}, L.-G. and Skoglund, U. and Isaksson, L.A.}
    7234 }
    7235 @article{Yeong1988a,
    7236   number = {1},
    7237   month = {July},
    7238   year = {1998},
    7239   title = {Reconstructing random media. {II}. Three-dimensional media from two-dimensional cuts},
    7240   journal = {Physical Review E},
    7241   volume = {58},
    7242   author = {Yeong, C.L.Y. and Torquato, S.}
    7243 }
    7244 @article{Geraets1998,
    7245   number = {2},
    7246   year = {1998},
    7247   title = {The Radiographic Trabecular Pattern of Hips in Patients with Hip Fractures and in Elderly Control Subjects},
    7248   pages = {165--173},
    7249   journal = {Bone},
    7250   volume = {22},
    7251   author = {Geraets, W.G.M. and Stelt, P.F. van der and Lips, P. and Ginkel, F.C. van}
    7252 }
    7253 @article{Rodriguez2000,
    7254   year = {2000},
    7255   title = {Origins of Illusory Percepts in Digital Images},
    7256   pages = {2007--2017},
    7257   journal = {Pattern Recognition},
    7258   volume = {33},
    7259   author = {Rodriguez-Sanchez, R. and Garcia, J.A. and Fdez-Valdivia, J. and Fdez-Valdivia, X.R.}
    7260 }
    7261 @book{Lenz1990,
    7262   year = {1990},
    7263   title = {Group Theoretical Methods in Image Processing},
    7264   publisher = {Springer-Verlag},
    7265   author = {Lenz, R.}
    7266 }
    7267 @phdthesis{Geraets1994,
    7268   year = {1994},
    7269   title = {Computer Aided Analysis of the Radiographic Trabecular Pattern},
    7270   address = {Amsterdam, The Netherlands},
    7271   school = {Vrije Universiteit Amsterdam},
    7272   author = {Geraets, W.G.M.}
    7273 }
    7274 @article{Grossmann1984,
    7275   year = {1984},
    7276   title = {Decomposition of {Hardy} functions into square integrable wavelets of constant shape},
    7277   pages = {723--736},
    7278   journal = {SIAM Journal of Mathematics},
    7279   volume = {15},
    7280   author = {Grossmann, A. and Morlet, J.}
    7281 }
    7282 @misc{Poynton1999,
    7283   year = {1999},
    7284   title = {Frequently Asked Questions about Color},
    7285   howpublished = {{\tt http://www.inforamp.net/~poynton}},
    7286   author = {Poynton, C.}
    7287 }
    7288 @book{Matheron1967,
    7289   year = {1967},
    7290   title = {Elements pour une Theorie des Milieux Poreux},
    7291   address = {Paris},
    7292   publisher = {Masson},
    7293   author = {Matheron, G.}
    7294 }
    7295 @article{Xu2003,
    7296   number = {5},
    7297   year = {2003},
    7298   title = {Curvature Computations of 2-manifolds in $\sR^k$},
    7299   pages = {681 -- 688},
    7300   journal = {Journal of Computational Mathematics},
    7301   volume = {21},
    7302   author = {Xu, G. and Bajaj, C.L.}
    7303 }
    7304 @article{Xu2001,
    7305   number = {9},
    7306   year = {2001},
    7307   title = {Efficient morphological shape representation with overlapping disk components },
    7308   pages = {1346 -1356},
    7309   journal = {IEEE Transactions on Image Processing},
    7310   volume = {10},
    7311   author = {Xu, J.}
    7312 }
    7313 @article{Wilson1984,
    7314   number = {6},
    7315   month = {November},
    7316   year = {1984},
    7317   title = {The Uncertainty Principle in Image Processing},
    7318   pages = {758--767},
    7319   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7320   volume = {6},
    7321   author = {Wilson, R. and Granlund, G.H.}
    7322 }
    7323 @article{Daniels1952,
    7324   year = {1952},
    7325   title = {The statistical theory of stiff chains},
    7326   pages = {290-311},
    7327   journal = {Proceedings of the Royal Society Edinburgh A},
    7328   volume = {63},
    7329   author = {Daniels, H.E.}
    7330 }
    7331 @article{Wilson1988,
    7332   number = {2},
    7333   month = {March/April},
    7334   year = {1988},
    7335   title = {Uncertainty and Inference in the Visual System},
    7336   pages = {305--312},
    7337   journal = {IEEE Transactions on Systems, Man and Cybernetics},
    7338   volume = {18},
    7339   author = {Wilson, R. and H. Knutsson, H.}
    7340 }
    7341 @article{Axelrod1976,
    7342   year = {1976},
    7343   title = {Mobility measurement by analysis of fluorescence photobleaching recovery kinetics},
    7344   pages = {1055-1069},
    7345   journal = {Biophysical Journal},
    7346   volume = {16},
    7347   author = {Axelrod, D. and Koppel, D.E. and Schlesinger, J. and Elson, E. and Webb, W.W.}
    7348 }
    7349 @article{Benes2000,
    7350   month = {October},
    7351   year = {2000},
    7352   title = {Stereological Estimation of Integral Mixed Curvature with Application},
    7353   pages = {26--31},
    7354   journal = {Journal of Microscopy},
    7355   volume = {200, Pt 1},
    7356   author = {Bene{\v s}, V. and Hlawiczkov? M. and Volen?, K.}
    7357 }
    7358 @inproceedings{Bertalmio2000,
    7359   month = {July},
    7360   year = {2000},
    7361   title = {Image Inpainting},
    7362   booktitle = {Proceedings of SIGGRAPH},
    7363   address = {New Orleans, USA},
    7364   author = {Bertalmio, M. and Sapiro, G. and Caselles, V. and Ballester, C.}
    7365 }
    7366 @article{Axelrod1979,
    7367   year = {1979},
    7368   title = {Carbocyanine dye orientation in red cell membrane studied by microscopic fluorescence polarization},
    7369   pages = {557-574},
    7370   journal = {Biophysical Journal},
    7371   volume = {26},
    7372   author = {Axelrod, D.}
    7373 }
    7374 @article{Tang1998,
    7375   number = {11},
    7376   year = {1998},
    7377   title = {Inference of Integrated Surface, Curve, and Junction Descriptions From Sparse 3D Data},
    7378   pages = {1206--1223},
    7379   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7380   volume = {20},
    7381   author = {Tang, C.K. and Medioni, G.}
    7382 }
    7383 @book{Fukunaga1972,
    7384   year = {1972},
    7385   title = {Introduction to Statistical Pattern Recognition},
    7386   address = {New York},
    7387   publisher = {Academic Press},
    7388   author = {Fukunaga, K.}
    7389 }
    7390 @article{Ahmed1974,
    7391   month = {January},
    7392   year = {1974},
    7393   title = {Discrete cosine transform},
    7394   pages = {88--93},
    7395   journal = {IEEE Transactions on Computers},
    7396   volume = {23},
    7397   annote = {key_fft},
    7398   author = {Ahmed, N. and Natarajan, T. and Rao, K.R.}
    7399 }
    7400 @article{Topf2005,
    7401   year = {2005},
    7402   title = {Structural characterization of components of protein assemblies 3 by comparative modeling and electron cryo-microscopy},
    7403   pages = {191-203},
    7404   journal = {Journal of Structural Biology},
    7405   volume = {149},
    7406   author = {Topf, M. and Baker, M.L. and John, B. and Chiu, W. and Sali, A.}
    7407 }
    7408 @book{Born1959,
    7409   edition = {6th},
    7410   year = {1980, 1977},
    7411   title = {Principles of Optics},
    7412   publisher = {Pergamon Press},
    7413   author = {Born, M. and Wolf, E.}
    7414 }
    7415 @book{Landau1969,
    7416   edition = {second},
    7417   year = {1969},
    7418   title = {Statistical Physics, Part 1},
    7419   publisher = {Pergamon Press},
    7420   author = {Landau, L.D. and Lifshitz,E.M.}
    7421 }
    7422 @article{Deegan2000,
    7423   number = {1},
    7424   year = {2000},
    7425   title = {Contact line deposits in an evaporating drop},
    7426   pages = {756--765},
    7427   journal = {Physical Review E},
    7428   volume = {62},
    7429   author = {Deegan, R.D. and Bakajin, O. and Dupont, T.F. and Huber, G. and Nagel, S.R. and Witten, T.A.}
    7430 }
    7431 @article{Abbe1873,
    7432   year = {1873},
    7433   title = {{Beitr\"age} zur Theorie des Mikroskopes und der mikroskopischen Wahrnehmung},
    7434   pages = {413-468},
    7435   journal = {Arch Mikrosk Anat},
    7436   volume = {9},
    7437   author = {Abbe, E.}
    7438 }
    7439 @article{Rocheleau2003,
    7440   year = {2003},
    7441   title = {Intrasequence {GFP} in Class {I MHC} Molecules, a Rigid Probe for Fluorescence Anisotropy Measurements of the Membrane Environment},
    7442   pages = {4078-4086},
    7443   journal = {Biophysical Journal},
    7444   volume = {84},
    7445   author = {Rocheleau, J.V. and Edidin, M. and Piston, D.W.}
    7446 }
    7447 @article{Hyvarinen1999,
    7448   number = {3},
    7449   year = {1999},
    7450   title = {Fast and Robust Fixed-Point Algorithms for Independent Component Analysis},
    7451   pages = {626-634},
    7452   journal = {IEEE Transactions on Neural Networks},
    7453   volume = {10},
    7454   author = {{Hyv\"arinen}, A.}
    7455 }
    7456 @article{Hell1995,
    7457   number = {2},
    7458   year = {1995},
    7459   title = {Two- and multiphoton detection as an imaging mode and means of increasing the resolution in far-field light microscopy: a study based on photon-optics},
    7460   pages = {64-69},
    7461   journal = {Bioimaging},
    7462   volume = {3},
    7463   author = {Hell, S.W. and Soukka, J. and {H\"anninen}, P.E.}
    7464 }
    7465 @article{Hell1994,
    7466   number = {11},
    7467   year = {1994},
    7468   title = {Measurement of the 4pi-confocal point spread function proves 75 nm axial resolution},
    7469   pages = {1335-1337},
    7470   journal = {Applied Physics Letter},
    7471   volume = {64},
    7472   author = {Hell, S.W. and Lindek, S. and Cremer, C. and Stelzer, E.H.K.}
    7473 }
    7474 @article{Hell1993,
    7475   number = {3},
    7476   year = {1993},
    7477   title = {Aberrations in confocal fluorescence microscopy induced by mismatching in refractive index},
    7478   pages = {391--405},
    7479   journal = {Journal of Microscopy},
    7480   volume = {169},
    7481   author = {Hell, S.W. and Reiner, G. and Cremer, C. and Stelzer, E.H.K.}
    7482 }
    7483 @article{Yin1994,
    7484   year = {1994},
    7485   title = {Tethered particle motion method for studying transcript elongation by a single {RNA} Polymerase Molecule},
    7486   pages = {2468-2478},
    7487   journal = {Biophysical Journal},
    7488   volume = {67},
    7489   author = {Yin, H. and Landick, R. and Gelles, J.}
    7490 }
    7491 @article{Chen1994a,
    7492   number = {12},
    7493   year = {1994},
    7494   title = {Symmetric phase only matched filtering of {Fourier-Mellin} transforms for image registration and recognition},
    7495   pages = {1156--1168},
    7496   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7497   volume = {16},
    7498   author = {Chen, Q. and Defrise, M. and Deconinck, F.}
    7499 }
    7500 @inproceedings{Boomgaard2001,
    7501   series = {Lecture Notes on Computer Science},
    7502   year = {2001},
    7503   title = {Gaussian Convolutions (Numerical Approximations Based on Interpolation)},
    7504   booktitle = {Proceedings Third International Conference on Scale-Space},
    7505   pages = {205--214},
    7506   editor = {Kerckhove, M.},
    7507   volume = {2106},
    7508   address = {Vancouver, Canada},
    7509   publisher = {Springer-Verlag},
    7510   author = {Boomgaard, R. van den and Weij, R. van der}
    7511 }
    7512 @inproceedings{Boomgaard2002,
    7513   month = {August 11-15},
    7514   year = {2002},
    7515   title = {On the equivalence of local-mode finding, robust estimation and mean-shift analysis as used in early vision tasks},
    7516   booktitle = {ICPR 2002, International Conference on Pattern Recognition},
    7517   editor = {Kasturi, R. and Laurendeau, D. and Suen, C.},
    7518   author = {Boomgaard, R. van den and Weijer, J. van de},
    7519   organization = {IEEE Computer Society}
    7520 }
    7521 @phdthesis{Lindeberg1991,
    7522   year = {1991},
    7523   title = {Discrete Scale-Space Theory and the Scale-Space Primal Sketch},
    7524   school = {Royal Institute of Technology Stockholm, Sweden},
    7525   author = {Lindeberg, T.}
    7526 }
    7527 @article{Cohen2002,
    7528   number = {6},
    7529   month = {June},
    7530   year = {2002},
    7531   title = {The {Gaussian} Watermarking Game},
    7532   pages = {1639--1667},
    7533   journal = {IEEE Transactions on Information Theory},
    7534   volume = {48},
    7535   author = {Cohen, A.S. and Lapidoth, A.}
    7536 }
    7537 @article{Lindeberg1993,
    7538   year = {1993},
    7539   title = {Discrete Derivative Approximations with Scale-space Properties: A Basis for Low-level Feature Extraction},
    7540   pages = {349--376},
    7541   journal = {Journal of Mathematical Imaging and Vision},
    7542   volume = {3},
    7543   author = {Lindeberg, T.}
    7544 }
    7545 @inbook{Davis1971,
    7546   series = {Methods in Enzymology},
    7547   year = {1971},
    7548   title = {Electron microscope heteroduplex methods for mapping regions of base sequence homology in nucleic acids},
    7549   pages = {413-428},
    7550   editor = {Grossman, L. and Moldave, K.},
    7551   volume = {21D},
    7552   address = {London},
    7553   publisher = {Academic Press},
    7554   author = {Davis, R.W. and Simon, M. and Davidson, N.}
    7555 }
    7556 @article{Cohen2005,
    7557   number = {6},
    7558   year = {2005},
    7559   title = {The history of noise},
    7560   pages = {20-45},
    7561   journal = { IEEE Signal Processing Magazine},
    7562   volume = {22},
    7563   author = {Cohen, L.}
    7564 }
    7565 @article{Lindeberg1998,
    7566   number = {2},
    7567   year = {1998},
    7568   title = {Feature Detection with Automatic Scale Selection},
    7569   pages = {79--116},
    7570   journal = {International Journal of Computer Vision},
    7571   volume = {30},
    7572   author = {Lindeberg, T.}
    7573 }
    7574 @article{Owens1994,
    7575   month = {January},
    7576   year = {1994},
    7577   title = {Feature-free Images},
    7578   pages = {35--44},
    7579   journal = {Pattern Recognition Letters},
    7580   volume = {15},
    7581   author = {Owens, R.A.}
    7582 }
    7583 @article{Lumia1983,
    7584   year = {1983},
    7585   title = {A New Connected Components Algorithm for Virtual Memory Computers},
    7586   pages = {287--300},
    7587   journal = {Computer Vision, Graphics, and Image Processing},
    7588   volume = {22},
    7589   author = {Lumia, R. and Shapiro, L. and Zuniga, O.}
    7590 }
    7591 @book{Stoyan1985,
    7592   edition = {second},
    7593   year = {1985, 1995},
    7594   title = {Stochastic Geometry and its Applications},
    7595   publisher = {John Wiley \& Sons, inc},
    7596   author = {Stoyan, D. and Kendall, W.S. and Mecke, J.}
    7597 }
    7598 @article{Patterson1997,
    7599   number = {5},
    7600   year = {1997},
    7601   title = {Use of green fluorescent protein and its mutants in quantitative fluorescence microscopy},
    7602   pages = {2782-2790},
    7603   journal = {Biophysical Journal},
    7604   volume = {73},
    7605   author = {Patterson, G.H. and Knobel, S.M. and Sharif, W.D. and Kain, S.R. and Piston, D.W.}
    7606 }
    7607 @inproceedings{Felsberg2001a,
    7608   year = {2001},
    7609   title = {Scale Adaptive Filtering Derived from the {Laplace} Equation},
    7610   booktitle = {DAGM Symposium},
    7611   note = {extended version.},
    7612   address = {{M\"unchen}, Germany},
    7613   author = {Felsberg, M. and Sommer, G.}
    7614 }
    7615 @techreport{Oktem2001,
    7616   year = {2001},
    7617   title = {A short overview of the {COMET} (COnstrained Maximum Entropy Tomography) methodology for solving inverse problems},
    7618   institution = {KTH, Sweden},
    7619   author = {{\"Oktem}, O.}
    7620 }
    7621 @phdthesis{Ellenberger2000,
    7622   year = {2000},
    7623   title = {Influence of defocus on measurements in microscope images },
    7624   type = {Thesis},
    7625   address = {The Netherlands},
    7626   school = {Technische Universiteit Delft},
    7627   author = {Ellenberger, S.L.}
    7628 }
    7629 @book{Poularikas1996,
    7630   year = {1996},
    7631   title = {The Transforms and Applications Handbook},
    7632   publisher = {CRC Press},
    7633   author = {Poularikas (ed), A.D.}
    7634 }
    7635 @article{Fleet1990,
    7636   year = {1990},
    7637   title = {Computation of component image velocity from local phase information},
    7638   pages = {77-104},
    7639   journal = {International Journal of Computer Vision},
    7640   volume = {5},
    7641   author = {Fleet, D.J. and Jepson, A.D.}
    7642 }
    7643 @inproceedings{Soille1998,
    7644   year = {1998},
    7645   title = {Image Structure Orientation using Mathematical Morphology},
    7646   booktitle = {Proceedings of the 14th IAPR International Conference on Pattern Recognition},
    7647   pages = {1467-1469},
    7648   editor = {Jain, A. K. and Venkatesh, S. and Lovell, B. C.},
    7649   volume = {1},
    7650   address = {Los Alamitos},
    7651   author = {Soille, P. and Talbot, H.},
    7652   organization = {IEEE Computer Society Press}
    7653 }
    7654 @article{Einstein1905a,
    7655   year = {1905},
    7656   title = {{Zur Elektro}dynamik bewegter {K\"orper}},
    7657   pages = {891-921},
    7658   journal = {Annalen der Physik},
    7659   volume = {17},
    7660   author = {Einstein, A.}
    7661 }
    7662 @article{Einstein1905b,
    7663   year = {1905},
    7664   title = {Ist die {Tr\"agheit} eines {K\"orpers} von seinem {Energieinhalt} {abh\"angig?}},
    7665   pages = {639-641},
    7666   journal = {Annalen der Physik},
    7667   volume = {18},
    7668   author = {Einstein, A.}
    7669 }
    7670 @book{Soille1999,
    7671   year = {1999},
    7672   title = {Morphological Image Analysis. Principles and Applications},
    7673   publisher = {Springer-Verlag},
    7674   author = {Soille, P.}
    7675 }
    7676 @inproceedings{Knutsson1981,
    7677   month = {August},
    7678   year = {1981},
    7679   title = {Anisotropic Filtering Operations for Image Enhancement and their Relation to the Visual System},
    7680   booktitle = {Proceedings of {IEEE} Computer Society Conference on Pattern Recognition and Image Processing},
    7681   address = {Dallas, Texas},
    7682   author = {Knutsson , H. and Wilson, R. G. and Granlund, G. H.}
    7683 }
    7684 @article{Soille1996,
    7685   number = {5},
    7686   year = {1996},
    7687   title = {Recursive Implementation of Erosions and Dilations Along Discrete Lines at Arbitrary Angles},
    7688   pages = {562-567},
    7689   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7690   volume = {18},
    7691   author = {Soille, P. and Breen, E. J. and Jones, R.}
    7692 }
    7693 @inproceedings{Spies2003,
    7694   series = {LNCS 2749},
    7695   month = {June 29 -July 2},
    7696   year = {2003},
    7697   title = {Two-Dimensional Channel Representation for Multiple Velocities},
    7698   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    7699   pages = {356-362},
    7700   editor = {{Big\"un}, J. and Gustavsson, T.},
    7701   address = {Berlin},
    7702   publisher = {Springer-Verlag},
    7703   author = {Spies, H. and Forssen, P.E.}
    7704 }
    7705 @phdthesis{Spies2001,
    7706   month = {July},
    7707   year = {2001},
    7708   title = {Analysing Dynamic Processes in Range Data Sequences},
    7709   address = {Heidelberg, Germany},
    7710   school = {Ruprechts-Karls-{Universit\"at} University},
    7711   author = {Spies, H.}
    7712 }
    7713 @article{Shapiro1978a,
    7714   year = {1978},
    7715   title = {Properties of Transforms for the Detection of Curves in Noisy Pictures},
    7716   pages = {219--236},
    7717   journal = {Computer Graphics and Image Processing},
    7718   volume = {8},
    7719   annote = {key_radon},
    7720   author = {Shapiro, S.D.}
    7721 }
    7722 @article{Schellman1980,
    7723   number = {3},
    7724   year = {1980},
    7725   title = {The flexibility of {DNA : I. Thermal} fluctuations},
    7726   pages = {321-328},
    7727   journal = {Biophysical Chemistry},
    7728   volume = {11},
    7729   author = {Schellman, J.A.}
    7730 }
    7731 @article{Klein1972,
    7732   number = {2},
    7733   year = {1972},
    7734   title = {The Texture Analyzer},
    7735   pages = {349--356},
    7736   journal = {Journal of Microscopy},
    7737   volume = {95},
    7738   author = {Klein, J.-C. and Serra, J.}
    7739 }
    7740 @article{Toffoli1997,
    7741   number = {2},
    7742   month = {March},
    7743   year = {1997},
    7744   title = {Three-Dimensional Rotations by Three Shears},
    7745   pages = {89--95},
    7746   journal = {Graphical Models and Image Processing},
    7747   volume = {59},
    7748   author = {Toffoli, T.}
    7749 }
    7750 @article{Sato2000,
    7751   number = {2},
    7752   month = {April--June},
    7753   year = {2000},
    7754   title = {Tissue Classification Based on 3{D} Local Intensity Structures for Volume Rendering},
    7755   pages = {160--179},
    7756   journal = {IEEE Transactions on Visualization and Computer Graphics},
    7757   volume = {6},
    7758   author = {Sato, Y. and Westin, C.-F. and Bhalerao, A. and Nakajima, S. and Shiraga, N. and Tamura, S. and Kikinus, R.}
    7759 }
    7760 @article{Kappers1996,
    7761   number = {2},
    7762   year = {1996},
    7763   title = {Detection of divergence in optical flow fields},
    7764   pages = {227-235},
    7765   journal = {Journal of the Optical Society of America A},
    7766   volume = {13},
    7767   author = {Kappers, A.M.L. and Pas, S.F. te and Koenderink, J.J. and Doorn, A.J van}
    7768 }
    7769 @article{Graham1997,
    7770   year = {1997},
    7771   title = {Detergent Foam Images as Analogue/Digital Model Fluids. 2. Investigation of Neighborship Partition of the Radial Distribution Function},
    7772   pages = {11212--11220},
    7773   journal = {Journal of Physical Chemistry B},
    7774   volume = {101},
    7775   author = {Graham, D.J. and Magdalinos, P. and Pimentel, D.}
    7776 }
    7777 @article{Siegmund1995,
    7778   year = {1995},
    7779   title = {Testing for a signal with unknown location and scale in a stationary Gaussian random field},
    7780   pages = {608--639},
    7781   journal = {Annals of Statistics},
    7782   volume = {23},
    7783   author = {Siegmund,D.O. and Worsley, K.J.}
    7784 }
    7785 @article{Zitova2003,
    7786   number = {11},
    7787   year = {2003},
    7788   title = {Image registration methods: a survey},
    7789   pages = {977-1000},
    7790   journal = {Image and Vision Computing},
    7791   volume = {21},
    7792   author = {{Zitov\'a}, B. and Flusser, J.}
    7793 }
    7794 @article{Balzarini2001,
    7795   year = {2001},
    7796   title = {Quantification and Description of Fracture Network by {MRI} Image Analysis},
    7797   pages = {539--541},
    7798   journal = {Magnetic Resonance Imaging},
    7799   volume = {19},
    7800   author = {Balzarini, M. and Nicula, S. and Mattiello, D. and Aliverti, E.}
    7801 }
    7802 @article{Watson1994,
    7803   number = {1},
    7804   year = {1994},
    7805   title = {Image Compression Using the Discrete Cosine Transform},
    7806   pages = {81--88},
    7807   journal = {The Mathematica Journal},
    7808   volume = {4},
    7809   author = {Watson, A.B.}
    7810 }
    7811 @article{Bradley2005,
    7812   year = {2005},
    7813   title = {An Astronomical 2175 \AA Feature in Interplanetary Dust Particles},
    7814   pages = {244-},
    7815   journal = {Science},
    7816   volume = {307},
    7817   author = {Bradley, J. and Dai Rong, Z. and Erni, R. and Browning, N. and Graham, G. and Weber, P. and Smith, J. and Hutcheon, I. and Ishii, H. and Bajt, S. and Floss, C. and Stadermann, F. and Sandford, S.}
    7818 }
    7819 @article{Coene1996,
    7820   year = {1996},
    7821   title = {Maximum-likelihood method for focus-variation image reconstruction in high resolution transmission electron microscopy},
    7822   pages = {109-135},
    7823   journal = {Ultramicroscopy},
    7824   volume = {64},
    7825   author = {Coene, W.M.J. and Thust, A. and Beeck, M. op de and Dyck, D. van}
    7826 }
    7827 @article{Bradley2004,
    7828   year = {2004},
    7829   title = {An analytical superstem for extraterrestrial materials research},
    7830   journal = {Lunar and Panetary Science},
    7831   volume = {35},
    7832   author = {Bradley, J.P. and Dia, Z.R. and Wall, M. and Erni, R. and Browning, N.}
    7833 }
    7834 @article{Morrone1987,
    7835   month = {December},
    7836   year = {1987},
    7837   title = {Feature Detection from Local Energy},
    7838   pages = {303--313},
    7839   journal = {Pattern Recognition Letters},
    7840   volume = {6},
    7841   author = {Morrone, M.C. and Owens, R.A.}
    7842 }
    7843 @inproceedings{Illers2004,
    7844   number = {1},
    7845   year = {2004},
    7846   title = {Measurement of the Detective Quantum Efficiency (DQE) of digital X-ray imaging devices according to the standard IEC 62220-1},
    7847   booktitle = {SPIE Proceedings},
    7848   pages = {177-187},
    7849   volume = {5368},
    7850   address = {Bellingham, Washington, USA},
    7851   author = {Illers, H. and Buhr, E. and Bergmann, D. and Hoeschen, C.}
    7852 }
    7853 @article{Princen1994,
    7854   number = {4},
    7855   month = {April},
    7856   year = {1994},
    7857   title = {Hypothesis Testing: A Framework for Analyzing and Optimizing {Hough} Transform Performance},
    7858   pages = {329--341},
    7859   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    7860   volume = {16},
    7861   author = {Princen, J. and Illingworth, J. and Kittler, J.}
    7862 }
    7863 @phdthesis{Bakker2002,
    7864   year = {2002},
    7865   title = {Image structure analysis for seismic interpretation},
    7866   address = {The Netherlands},
    7867   school = {Delft University of Technology},
    7868   author = {Bakker, P.}
    7869 }
    7870 @article{Saxton1997,
    7871   year = {1997},
    7872   title = {Single-particle tracking: the distribution of diffusion coefficients},
    7873   pages = {1744-1753},
    7874   journal = {Biophysical Journal},
    7875   volume = {72},
    7876   author = {Saxton, M.J.}
    7877 }
    7878 @article{Princen1992,
    7879   year = {1992},
    7880   title = {A Formal Definition of the {Hough} Transform: Properties and Relationships},
    7881   pages = {153--168},
    7882   journal = {Journal of Mathematical Imaging and Vision},
    7883   volume = {1},
    7884   author = {Princen, J. and Illingworth, J. and Kittler, J.}
    7885 }
    7886 @inproceedings{Bakker2001,
    7887   month = {July 9-12},
    7888   year = {2001},
    7889   title = {Confidence and curvature estimation of curvilinear structures in {3-D}},
    7890   booktitle = {ICCV'01 (Vancouver, Canada)},
    7891   pages = {139--144},
    7892   volume = {II},
    7893   author = {Bakker, P. and Verbeek, P.W. and Vliet, L.J. van},
    7894   organization = {IEEE}
    7895 }
    7896 @book{Constantinescu1974,
    7897   year = {1974},
    7898   title = {Distributionen und ihre Anwendung in der Physik},
    7899   address = {Stuttgart},
    7900   publisher = {Teubner},
    7901   author = {Constantinescu, F.}
    7902 }
    7903 @book{Chung2001,
    7904   edition = {third},
    7905   year = {2001 (1968)},
    7906   title = {A Course in Probability Theory},
    7907   publisher = {Academic Press},
    7908   author = {Chung, K.L.}
    7909 }
    7910 @phdthesis{BOOMGAARD1992chap3,
    7911   year = {1992},
    7912   title = {Mathematical Morphology: Extensions Towards Computer Vision},
    7913   note = {Chapter 3, Dimensional Decomposition of Structuring Functions},
    7914   school = {University of Amsterdam},
    7915   author = {Boomgaard, R. van den}
    7916 }
    7917 @article{Mindell2003,
    7918   year = {2003},
    7919   title = {Accurate determination of local defocus and specimen tilt in electron microscopy},
    7920   pages = {334-347},
    7921   journal = {Journal of Structural Biology},
    7922   volume = {142},
    7923   author = {Mindell, J.A. and Grigorieff, N.}
    7924 }
    7925 @article{Chung2000,
    7926   number = {9},
    7927   month = {September},
    7928   year = {2000},
    7929   title = {On the Level Lines and Geometry of Vector-valued Images},
    7930   pages = {241--243},
    7931   journal = {IEEE Signal Processing Letters},
    7932   volume = {7},
    7933   author = {Chung, D.H. and Sapiro, G.}
    7934 }
    7935 @article{Pei1997,
    7936   month = {November},
    7937   year = {1997},
    7938   title = {An Introduction to Discrete Finite Frames},
    7939   pages = {84--96},
    7940   journal = {Signal Processing Magazine},
    7941   author = {Pei, S.-C. and Yeh, M.-H.}
    7942 }
    7943 @article{Rooms2005,
    7944   number = {1},
    7945   year = {2005},
    7946   title = {Simultaneous degradation estimation and restoration of confocal images and performance evaluation by colocalization analysis},
    7947   pages = {22-36},
    7948   journal = {Journal of Microscopy},
    7949   volume = {218},
    7950   author = {Rooms, F. and Philips, W. and Lidke, D.S.}
    7951 }
    7952 @article{Pei1994,
    7953   number = {8},
    7954   year = {1994},
    7955   title = {Using moments to acquire the motion Parameters of a deformable object without correspondence },
    7956   pages = {475--485},
    7957   journal = {Image and Vision Computing},
    7958   volume = {12},
    7959   author = {Pei, S.-C. and Liou, L.-G.}
    7960 }
    7961 @techreport{TEAMReport2000,
    7962   year = {2000},
    7963   author = {Material Science Division Argonne National Laboratory}
    7964 }
    7965 @inproceedings{Felsberg2002,
    7966   series = {Lecture Notes in Computer Science},
    7967   year = {2002},
    7968   title = {Image Features Based on a New Approach to {2D} Rotation Invariant Quadrature Filters},
    7969   booktitle = {ECCV 2002 (Copenhagen, Denmark)},
    7970   pages = {369--383},
    7971   editor = {Heyden, A. and Sparr, G. and Nielsen, M. and Johansen, P.},
    7972   volume = {2350},
    7973   publisher = {Springer Verlag},
    7974   author = {Felsberg, M. and Sommer, G.}
    7975 }
    7976 @article{Parida1998,
    7977   number = {7},
    7978   month = {July},
    7979   year = {1998},
    7980   title = {Junctions: Detection, Classification, and Reconstruction},
    7981   pages = {687--698},
    7982   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    7983   volume = {20},
    7984   author = {Parida, L. and Geiger, D. and Hummel, R.}
    7985 }
    7986 @inproceedings{Felsberg2000,
    7987   year = {2000},
    7988   title = {Structure Multivector for Local Analysis of Images},
    7989   booktitle = {Proc. Dagstuhl Workshop on Theoretical Foundations of Computer Vision},
    7990   author = {Felsberg, M. and Sommer, G.}
    7991 }
    7992 @article{Felsberg2001,
    7993   number = {12},
    7994   year = {2001},
    7995   title = {The Monogenic Signal},
    7996   pages = {3136--3144},
    7997   journal = {IEEE Transactions on Signal Processing},
    7998   volume = {49},
    7999   author = {Felsberg, M. and Sommer, G.}
    8000 }
    8001 @article{Felsberg2004,
    8002   number = {1},
    8003   year = {2004},
    8004   title = {The Monogenic Scale-Space: A Unifying Approach to Phase-Based Image Processing in Scale-Space},
    8005   pages = {5--26},
    8006   journal = {Journal of Mathematical Imaging and Vision},
    8007   volume = {21},
    8008   author = {Felsberg, M. and Sommer, G.}
    8009 }
    8010 @article{Stoger-Pollach2006,
    8011   year = {2006},
    8012   title = {Cerenkov losses: A limit for bandgap determination and {Kramers-Kronig} analysis},
    8013   pages = {396-402},
    8014   journal = {Micron},
    8015   volume = {37},
    8016   author = {{St\"oger-Pollach}, M. and Franco, H. and Schattschneider, P. and Lazar, S. and Schaffer, B. and Grogger, W. and Zandbergen, H.W.}
    8017 }
    8018 @article{Dekker1997,
    8019   number = {3},
    8020   year = {1997},
    8021   title = {Resolution: a survey},
    8022   pages = {547-557},
    8023   journal = {Journal of the Optical Society of America A},
    8024   volume = {14},
    8025   author = {Dekker, A.J. den and Bos, A. van den}
    8026 }
    8027 @article{Porod1953,
    8028   number = {2},
    8029   year = {1953},
    8030   title = {X-ray and light scattering by chain molecules in solution},
    8031   pages = {157-166},
    8032   journal = {Journal of Polymer Science},
    8033   volume = {10},
    8034   author = {Porod, G.}
    8035 }
    8036 @article{Wong1992,
    8037   year = {1992},
    8038   title = {Measurement of spherical aberration in {STEM}},
    8039   pages = {139-150},
    8040   journal = {Ultramicroscopy},
    8041   volume = {40},
    8042   author = {Wong, K. and Kirkland, E. and Xu, P. and Loane, R. and Silcox, J.}
    8043 }
    8044 @techreport{Cozman1997,
    8045   year = {1997},
    8046   title = {An Informal Introduction to Quasi-{Bayesian} Theory (and Lower Probability, Lower Expectations, Choquet Capacities, Robust {Bayesian} Methods, etc\dots) for {AI}},
    8047   note = {CMU-RI-TR-97-24},
    8048   address = {Pittsburgh, USA},
    8049   institution = {The Robotics Institute, Carnegie Mellon University},
    8050   author = {Cozman, F.}
    8051 }
    8052 @article{Dekker1999,
    8053   number = {1},
    8054   year = {1999},
    8055   title = {How to optimize the design of a quantitative {HREM} experiment so as to attain the highest precision},
    8056   pages = {95-104},
    8057   journal = {Journal of Microscopy},
    8058   volume = {194},
    8059   author = {Dekker, A.J. den and Sijbers, J. and Dyck, D. van}
    8060 }
    8061 @article{Zhang2003,
    8062   year = {2003},
    8063   title = {Automated image acquisition and processing using a new generation of {4Kx4K CCD} cameras for cryo electron microscopic studies of macromolecular assemblies},
    8064   pages = {135-144},
    8065   journal = {Journal of Structural Biology},
    8066   volume = {143},
    8067   author = {Zhang, P. and Borgnia, M.J. and Mooney, P. and Shi, D. and Pan, M. and O'Herron, P. and Mao, A. and Brogan, D. and Milne, J.L.S. and Subramaniam, S.}
    8068 }
    8069 @article{Zhang2001,
    8070   number = {5},
    8071   month = {May},
    8072   year = {2001},
    8073   title = {Image Sequence Segmentation Using 3-D Structure Tensor and Curve Evolution},
    8074   pages = {629--641},
    8075   journal = {IEEE Transactions on Circuits and Systems for Video Technology},
    8076   volume = {11},
    8077   author = {Zhang, J. and Gao, J. and Liu, W.}
    8078 }
    8079 @article{Kutka1996,
    8080   number = {1},
    8081   month = {February},
    8082   year = {1996},
    8083   title = {Extraction of Line Properties Based on Direction Fields},
    8084   pages = {51--58},
    8085   journal = {IEEE Transactions on Medical Imaging},
    8086   volume = {15},
    8087   author = {Kutka, R. and Stier, S.}
    8088 }
    8089 @article{Adams1993,
    8090   number = {5},
    8091   year = {1993},
    8092   title = {Radial Decomposition of Discs and Spheres},
    8093   pages = {325--332},
    8094   journal = {CVGIP: Graphical Models and Image Processing},
    8095   volume = {55},
    8096   author = {Adams, R.}
    8097 }
    8098 @inproceedings{Gilles1985,
    8099   year = {1985},
    8100   title = {Universal Computer Program for Seeking of a Collision Free Path for an Industrial Robot},
    8101   booktitle = {Proceedings of the 15th ISIR Conference (Tokyo)},
    8102   author = {Gilles, W.}
    8103 }
    8104 @article{Rushing2001,
    8105   number = {8},
    8106   year = {2001},
    8107   title = {Using association rules as texture features},
    8108   pages = {845 -858},
    8109   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    8110   volume = {23},
    8111   author = {Rushing, J.A. and Ranganath, H.S. and Hinke, T.H. and Graves, S.J.}
    8112 }
    8113 @article{Jonge2004,
    8114   year = {2004},
    8115   title = {Carbon nanotube electron sources and applications},
    8116   pages = {2239-2266},
    8117   journal = {Philosophical Transactions of the Royal Society of London A},
    8118   volume = {362},
    8119   author = {Jong, N. de and Bonard, J.M.}
    8120 }
    8121 @article{Mullikin1992,
    8122   number = {6},
    8123   year = {1992},
    8124   title = {The vector distance transform in two and three dimensions},
    8125   pages = {526-535},
    8126   journal = {Graphical Models and Image Processing},
    8127   volume = {54},
    8128   author = {Mullikin, J.C.}
    8129 }
    8130 @article{Hermans1952,
    8131   number = {11},
    8132   year = {1952},
    8133   title = {The statistics of stiff chains, with applications to light scattering},
    8134   pages = {951-971},
    8135   journal = {Physica},
    8136   volume = {18},
    8137   author = {Hermans, J.J. and Ullman, R.}
    8138 }
    8139 @article{Kram1993,
    8140   year = {1993},
    8141   title = {Localization of branching enzyme in potato tuber cells with the use of immunoelectron microscopy},
    8142   pages = {237-243},
    8143   journal = {Plant Physiology},
    8144   volume = {101},
    8145   author = {Kram, A.M. and Oostergetel, G.T. and Bruggen, E.F.J. van}
    8146 }
    8147 @article{Daubechies1986,
    8148   year = {1986},
    8149   title = {Painless nonorthogonal expansions},
    8150   pages = {1271--1283},
    8151   journal = {J. Math. Phys.},
    8152   volume = {27},
    8153   author = {Daubechies, I. and Grossmann, A. and Meyer, Y.}
    8154 }
    8155 @book{Misner1999,
    8156   year = {1999},
    8157   title = {Gravitation},
    8158   address = {New York},
    8159   publisher = {W.H. Freeman and Company},
    8160   author = {Misner, C.W. and Thorne, K.S. and Wheeler, J.A.}
    8161 }
    8162 @book{Abramowitz1973,
    8163   year = {1973},
    8164   title = {Handbook of Mathematical Functions},
    8165   publisher = {Dover Publications},
    8166   author = {Abramowitz, M. and Stegun, I.A.}
    8167 }
    8168 @article{CLIF1,
    8169   year = {1993},
    8170   title = {Imaginary Numbers are not Real - the Geometric Algebra of Spacetime.},
    8171   pages = {1775},
    8172   journal = {Found. Phys.},
    8173   volume = {23},
    8174   author = {Gull, S. and Lasenby, A. and Doran, C.}
    8175 }
    8176 @book{Young1983,
    8177   year = {1983},
    8178   title = {Signals and Systems},
    8179   publisher = {Prentice-Hall},
    8180   author = {Oppenheim, A.V. and Willsky, A.S. and Young, I.T.}
    8181 }
    8182 @article{Elder1999,
    8183   number = {2/3},
    8184   year = {1999},
    8185   title = {Are Edges Incomplete?},
    8186   pages = {97--122},
    8187   journal = {International Journal of Computer Vision},
    8188   volume = {34},
    8189   author = {Elder, J.H.}
    8190 }
    8191 @article{Sole2001,
    8192   year = {2001},
    8193   title = {Crease Enhancement Diffusion},
    8194   pages = {241--248},
    8195   journal = {Computer Vision and Image Understanding},
    8196   volume = {84},
    8197   author = {{Sol\'e}, A.F. and {L\'opez}, A. and Sapiro, G.}
    8198 }
    8199 @article{Elder1998,
    8200   number = {7},
    8201   year = {1998},
    8202   title = {Local scale control for edge detection and blur estimation},
    8203   pages = {699--716},
    8204   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    8205   volume = {20},
    8206   author = {Elder, J.H. and Zucker, S.W.}
    8207 }
    8208 @book{Vladimirov1986,
    8209   year = {1986},
    8210   title = {A Collection of Problems on the Equations of Mathematical Physics},
    8211   address = {Heildelberg},
    8212   publisher = {Springer},
    8213   author = {Vladimirov, S.V.}
    8214 }
    8215 @inproceedings{Elder1996,
    8216   year = {1996},
    8217   title = {Scale Space Localization, Blur and Contour-based Image Coding},
    8218   booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition},
    8219   pages = {27--34},
    8220   address = {San Francisco, USA},
    8221   author = {Elder, J. and Zucker, S.}
    8222 }
    8223 @article{Young1977,
    8224   number = {7},
    8225   year = {1977},
    8226   title = {Proof without Prejudice: Use of the {Kolmogorov-Smirnov} Test for the Analysis of Histograms from Flow Systems and Other Sources},
    8227   pages = {935--941},
    8228   journal = {Journal of Histochemistry and Cytochemistry},
    8229   volume = {25},
    8230   author = {Young, I.T.}
    8231 }
    8232 @article{Young1974,
    8233   number = {4},
    8234   month = {August},
    8235   year = {1974},
    8236   title = {An Analysis Technique for Biological Shape {I}},
    8237   pages = {357--370},
    8238   journal = {Information and Control},
    8239   volume = {25},
    8240   author = {Young, I.T. and Walker, J.E. and Bowie, J.E.}
    8241 }
    8242 @article{Ebeling1993,
    8243   number = {1},
    8244   month = {January},
    8245   year = {1993},
    8246   title = {Detecting Structure in Two Dimensions Combining Voronoi Tessellation and Percolation},
    8247   pages = {704--710},
    8248   journal = {Physical Review E},
    8249   volume = {47},
    8250   author = {Ebeling, H. and Wiedemann, G.}
    8251 }
    8252 @article{Goutsias2000,
    8253   year = {2000},
    8254   title = {Fundamenta Morphologicae Mathematicae},
    8255   pages = {1--31},
    8256   journal = {Fundamenta Informaticae},
    8257   volume = {41},
    8258   author = {Goutsias, John and Heijmans, Henk J.A.M.}
    8259 }
    8260 @article{Winkler2003,
    8261   year = {2003},
    8262   title = {Focus gradient correction applied to tilt series image data used in electron tomography},
    8263   pages = {24-32},
    8264   journal = {Journal of Structural Biology},
    8265   volume = {143},
    8266   author = {Winkler, H. and Taylor, K.A.}
    8267 }
    8268 @article{Winkler2006,
    8269   year = {2006},
    8270   title = {Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography},
    8271   pages = {240-254},
    8272   journal = {Ultramicroscopy},
    8273   volume = {106},
    8274   author = {Winkler, H. and Taylor, K.A.}
    8275 }
    8276 @article{Shapiro1975,
    8277   year = {1975},
    8278   title = {Transformations for the Computer Detection of Curves in Noisy Pictures},
    8279   pages = {328--338},
    8280   journal = {Computer Graphics and Image Processing},
    8281   volume = {4},
    8282   annote = {key_radon},
    8283   author = {Shapiro, S.D.}
    8284 }
    8285 @article{Weickert2001,
    8286   number = {3},
    8287   year = {2001},
    8288   title = {Variational Optic Flow Computation with a Spatio-Temporal Smoothness Constraint},
    8289   pages = {245 - 255},
    8290   journal = {Journal of Mathematical Imaging and Vision},
    8291   volume = {14},
    8292   author = {Weickert, J. and {Sch\"orr}, C.}
    8293 }
    8294 @article{Heintzmann2003a,
    8295   number = {7},
    8296   year = {2003},
    8297   title = {Saturated patterned excitation microscopy with two-dimensional excitation patterns},
    8298   pages = {283-291},
    8299   journal = {Micron},
    8300   volume = {34},
    8301   author = {Heintzmann, R.}
    8302 }
    8303 @article{Shapiro1978,
    8304   year = {1978},
    8305   title = {Feature Space Transforms for Curve Detection},
    8306   pages = {129--143},
    8307   journal = {Pattern Recognition},
    8308   volume = {10},
    8309   annote = {key_radon},
    8310   author = {Shapiro, S.D.}
    8311 }
    8312 @article{Verbeek1994kort,
    8313   number = {7},
    8314   year = {1994},
    8315   title = {On the location error of curved edges in low-pass filtered {2-D} and {3-D} images },
    8316   pages = {726--733},
    8317   journal = {PAMI},
    8318   volume = {16},
    8319   author = {Verbeek, P.W. and Vliet, L.J. van }
    8320 }
    8321 @inproceedings{Thevenaz2000,
    8322   year = {2000},
    8323   title = {Image Interpolation and Resampling},
    8324   booktitle = {Handbook of Medical Image Processing},
    8325   editor = {Bankman, I.},
    8326   publisher = {Academic Press},
    8327   author = {Th\'evenaz, P. and Blu, T. and Unser M.}
    8328 }
    8329 @article{Guessoum1986,
    8330   number = {4},
    8331   month = {August},
    8332   year = {1986},
    8333   title = {Fast Algorithms for the Multidimensional Discrete {Fourier} Transform},
    8334   pages = {937--943},
    8335   journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
    8336   volume = {34},
    8337   annote = {key_fft},
    8338   author = {Guessoum, A. and Merserau, R.M.}
    8339 }
    8340 @phdthesis{Vrooman1991,
    8341   year = {1991},
    8342   title = {Quantitative analysis of interferograms},
    8343   address = {Delft, the Netherlands},
    8344   school = {Delft University of Technology},
    8345   author = {Vrooman, H.A.}
    8346 }
    8347 @article{Levi2005,
    8348   number = {4},
    8349   year = {2005},
    8350   title = {{3-D} Particle Tracking in a Two-Photon Microscope: Application to the Study of Molecular Dynamics in Cells},
    8351   pages = {2919-2929},
    8352   journal = {Biophysical Journal},
    8353   volume = {88},
    8354   author = {Levi, V. and Ruan, Q.Q. and Grattown, E.}
    8355 }
    8356 @book{Bernerian1992,
    8357   year = {1992},
    8358   title = {Linear Algebra},
    8359   address = {Oxford},
    8360   publisher = {Oxford},
    8361   author = {Berberian, S.K.}
    8362 }
    8363 @misc{Zach2003,
    8364   year = {2003},
    8365   title = {Method for detecting geometrical-optical aberrations},
    8366   howpublished = {US2003/0001102},
    8367   author = {Zach, J.}
    8368 }
    8369 @book{Heijmans1994,
    8370   series = {Advances in Electronics and Electron Physics},
    8371   year = {1994},
    8372   title = {Morphological Image Operators},
    8373   editor = {Hawkes, P.W. and Kazan, B.},
    8374   volume = {25},
    8375   address = {San Diego},
    8376   publisher = {Academic Press},
    8377   author = {Heijmans, H.J.A.M.}
    8378 }
    8379 @article{Zemlin1978,
    8380   year = {1978},
    8381   title = {Coma-free alignment of high resolution electron microscopes with the aid of optical diffratctorgrams},
    8382   pages = {49-60},
    8383   journal = {Ultramicroscopy},
    8384   volume = {3},
    8385   author = {Zemlin, F. and Weiss, K. and Schiske, P. and Kunath, W. and Herrmann, K.-H.}
    8386 }
    8387 @article{Goetcherian1980,
    8388   year = {1980},
    8389   title = {From Binary to Grey Tone Image Processing Using Fuzzy Logic Concepts},
    8390   pages = {7-15},
    8391   journal = {Pattern Recognition},
    8392   volume = {12},
    8393   author = {Goetcherian, V.}
    8394 }
    8395 @inbook{Rao2002,
    8396   year = {2002},
    8397   title = {Encyclopedia of Imaging Science and Technology},
    8398   pages = {1444--1450},
    8399   editor = {Hornak, J.P.},
    8400   volume = {2},
    8401   chapter = {Wavelet Transforms},
    8402   publisher = {John Wiley\&Sons},
    8403   author = {Rao, R.}
    8404 }
    8405 @book{Jahne2002,
    8406   year = {2002},
    8407   title = {Digital Image Processing},
    8408   address = {Berlin},
    8409   publisher = {Springer-Verlag},
    8410   author = {{J\"ahne}, B.}
    8411 }
    8412 @misc{Kahan1995,
    8413   year = {1995},
    8414   title = {The Baleful Effect of Computer Benchmarks upon Applied Mathematics, Physics and Chemistry},
    8415   howpublished = {Mathematics Dept., and Elect. Eng. \& Computer Sci. Dept., University of California, USA},
    8416   author = {Kahan, W.}
    8417 }
    8418 @article{You1996,
    8419   number = {2},
    8420   month = {February},
    8421   year = {1996},
    8422   title = {Ringing Reduction in Image Restoration by Orientation-Selective Regularization},
    8423   pages = {29--31},
    8424   journal = {IEEE Signal Processing Letters},
    8425   volume = {3},
    8426   author = {You, Y.-L. and Kaveh, M.}
    8427 }
    8428 @article{Luengo2005a,
    8429   number = {11},
    8430   year = {2005},
    8431   title = {Using Line Segments as Structuring Elements for Sampling-Invariant Measurements},
    8432   pages = {1826-1831},
    8433   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    8434   volume = {27},
    8435   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    8436 }
    8437 @mastersthesis{Luengo1998,
    8438   year = {1998},
    8439   title = {Improved Resolution in Infrared Imaging Using randomly Shifted Images},
    8440   address = {Delft},
    8441   school = {Pattern Recognition Group, Faculty of Applied Sciences, Delft University of Technology},
    8442   author = {Luengo Hendriks, C.L.}
    8443 }
    8444 @article{Gatica2001,
    8445   number = {9},
    8446   year = {2001},
    8447   title = {Extensive partition operators, gray-level connected operators, and region merging/classification segmentation algorithms: theoretical links },
    8448   pages = {1332 -1345},
    8449   journal = {IEEE Transactions on Image Processing},
    8450   volume = {10},
    8451   author = {Gatica-Perez, D. and Gu, C. and Sun, M.-T. and Ruiz-Correa, S.}
    8452 }
    8453 @article{Keil1996,
    8454   number = {10},
    8455   month = {May},
    8456   year = {1996},
    8457   title = {Modelling of Phenomena within Catalyst Particles},
    8458   pages = {1543--1567},
    8459   journal = {Chemical Engineering Science},
    8460   volume = {51},
    8461   author = {Keil, F.J.}
    8462 }
    8463 @misc{Tolimieri2000,
    8464   year = {2000},
    8465   title = {Lesser Known {FFT} Algorithms},
    8466   note = {20th Century Harmonic Analysis -- A Celebration, NATO Advanced Study Institute},
    8467   annote = {key_fft},
    8468   author = {Tolimieri, R. and An, M.}
    8469 }
    8470 @inproceedings{Felsberg2000a,
    8471   year = {2000},
    8472   title = {The Multidimensional Isotropic Generalization of Quadrature Filters in Geometric Algebra},
    8473   booktitle = {2nd International Workshop on Algebraic Frames for the Perception-Action Cycle, AFPAC 2000, Kiel, Germany},
    8474   pages = {175--185},
    8475   publisher = {Springer Verlag},
    8476   author = {Felsberg, M. and Sommer, G.}
    8477 }
    8478 @incollection{Young1998,
    8479   year = {1998},
    8480   title = {Image Processing Fundamentals },
    8481   booktitle = {The Digital Signal Processing handbook},
    8482   editor = {Madisetti, V.K. and Williams, D.B.},
    8483   chapter = {51},
    8484   publisher = {IEEE Press and CRC Press },
    8485   author = {Young, I.T. and Gerbrands, J.J. and Vliet, L.J. van }
    8486 }
    8487 @article{Jeulin2000,
    8488   year = {2000},
    8489   title = {Random Texture Models for Material Structures},
    8490   pages = {121--132},
    8491   journal = {Statistics and Computing},
    8492   volume = {10},
    8493   author = {Jeulin, D.}
    8494 }
    8495 @inproceedings{Young1993,
    8496   month = {May 25-28},
    8497   year = {1993},
    8498   title = {Depth-of-focus in microscopy },
    8499   booktitle = {SCIA'93, Proceedings of the 8th Scandinavian Conference on Image Analysis},
    8500   pages = {493-498},
    8501   editor = {{H\o gda}, K. A. and Braathen, B. and Heia, K.},
    8502   address = {{Troms\o} Norway},
    8503   publisher = {Norwegian Society for Image Processing and Pattern Recognition},
    8504   author = {Young, I.T. and Zagers, R. and Vliet, L.J. van and Mullikin, J. and Boddeke, F.R. and Netten, H.}
    8505 }
    8506 @article{HaarRomeny1994,
    8507   number = {6},
    8508   year = {1994},
    8509   title = {Higher order differential structure of images},
    8510   pages = {317-325},
    8511   journal = {Image and Vision Computing},
    8512   volume = {12},
    8513   author = {Haar Romeny, B.M. ter and Florack, L.M.J. and Salden, A.H. and Viergever, M.A.}
    8514 }
    8515 @article{Haider1998,
    8516   year = {1998},
    8517   title = {A spherical-aberration-corrected 200 {kV} transmission electron microscope},
    8518   pages = {53-60},
    8519   journal = {Ultramicroscopy},
    8520   volume = {75},
    8521   author = {Haider, M. and Rose, H. and Uhlemann, S. and Schwan, E. and Kabius, B. and Urban, K.}
    8522 }
    8523 @article{Young1995,
    8524   number = {2},
    8525   year = {1995},
    8526   title = {Recursive implementation of the {G}aussian filter},
    8527   pages = {139--151},
    8528   journal = {Signal Processing},
    8529   volume = {44},
    8530   author = {Young, I.T. and Vliet, L.J. van}
    8531 }
    8532 @article{Young1996,
    8533   number = {1},
    8534   year = {1996},
    8535   title = {Quantitative Microscopy},
    8536   pages = {59-66},
    8537   journal = {IEEE Engineering in Medicine and Biology},
    8538   volume = {15},
    8539   author = {Young, I.T.}
    8540 }
    8541 @article{Milne2002,
    8542   year = {2002},
    8543   title = {Molecular architecture and mechanism of an icosahedral pyruvate dehydrogenase complex: a multifunctional catalytic machine},
    8544   pages = {5587-5598},
    8545   journal = {EMBO Journal},
    8546   volume = {21},
    8547   author = {Milne, J.L.S. and Shi, D. and Rosenthal, P.B. and Sunshine, J.S. and Domingo, G.J. and Wu, X. and Brooks, B.R. and Perham, R.N. and Henderson, R. and Subramaniam, S.}
    8548 }
    8549 @incollection{Ginkel2001a,
    8550   year = {2001},
    8551   title = {Applications of Image Analysis in Orientation Space},
    8552   booktitle = {Fourth Quinqennial Review 1996-2001 of the Dutch Society for Pattern Recognition and Image Processing},
    8553   pages = {365--380},
    8554   editor = {Vossepoel, A.M. and Vos, F.M.},
    8555   author = {Ginkel, M. van and Vliet, L.J. van and Verbeek, P.W.}
    8556 }
    8557 @book{Schone1990,
    8558   year = {1990},
    8559   title = {Differentialgeometrie},
    8560   address = {Leipzig},
    8561   publisher = {Teubner},
    8562   author = {W. {Sch\"one}}
    8563 }
    8564 @article{Nickell2004,
    8565   number = {3},
    8566   year = {2004},
    8567   title = {{TOM} software toolbox: acquisition and analysis for electron tomography},
    8568   pages = {227-234},
    8569   journal = {Journal of Strcutural Biology},
    8570   volume = {149},
    8571   author = {Nickell, S. and {F\"orster}, F. and Linaroudis, A. and Net, W. del and Beck, F. and Hegerl, R. and Baumeister, W. and Plizko, J.M.}
    8572 }
    8573 @inproceedings{Kaltenbacher1996,
    8574   year = {1996},
    8575   title = {High resolution infrared image reconstruction using multiple, low resolution, aliased frames},
    8576   booktitle = {SPIE Proceedings},
    8577   pages = {142-152},
    8578   volume = {2751},
    8579   author = {Kaltenbacher, E.A. and Hardie, R.C.}
    8580 }
    8581 @article{Yaroslavsky2003,
    8582   number = {20},
    8583   year = {2003},
    8584   title = {Boundary effect free and adaptive discrete signal sinc-interpolation algorithms for signal and image resampling},
    8585   pages = {4166-4175},
    8586   journal = {Applied Optics},
    8587   volume = {42},
    8588   author = {Yaroslavsky, L.}
    8589 }
    8590 @article{Yeong1998,
    8591   number = {1},
    8592   month = {January},
    8593   year = {1998},
    8594   title = {Reconstructing random media},
    8595   journal = {Physical review E},
    8596   volume = {57},
    8597   author = {Yeong, C.L.Y. and Torquato, S.}
    8598 }
    8599 @inproceedings{Leonardis1992,
    8600   series = {Lecture Notes in Computer Science 588},
    8601   month = {May},
    8602   year = {1992},
    8603   title = {Finding Parametric Curves in an Image},
    8604   booktitle = {Second European Conference on Computer Vision},
    8605   pages = {653--657},
    8606   editor = {Sandini, G.},
    8607   address = {Santa Margherita Ligure, Italy},
    8608   publisher = {Springer},
    8609   author = {Leonardis, A. and Bajcsy, R.}
    8610 }
    8611 @article{Wallrabe2005,
    8612   number = {1},
    8613   year = {2005},
    8614   title = {Imaging protein molecules using FRET and FLIM microscopy},
    8615   pages = {19-27},
    8616   journal = {Current Opinion in Biotechnology},
    8617   volume = {16},
    8618   author = {Wallrabe, H. and Periasamy, A.}
    8619 }
    8620 @article{Barron1994,
    8621   number = {1},
    8622   year = {1994},
    8623   title = {Performance of optical flow techniques},
    8624   pages = {43--77},
    8625   journal = {International Journal of Computer Vision},
    8626   volume = {12},
    8627   author = {Barron, J.L. and Fleet, D.J. and Beauchemin, S.}
    8628 }
    8629 @book{Bronstein2000,
    8630   year = {2000},
    8631   title = {Taschenbuch der Mathematik},
    8632   publisher = {Verlag Harri Deutsch},
    8633   author = {Bronstein, I.N. and Semendjajew, K.A. and Musiol, G. and {M\"uhlig}, H.}
    8634 }
    8635 @article{Martin2001,
    8636   year = {2001},
    8637   title = {Combined {EM/X}-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage {PRD1} and Shows Key Capsid and Membrane Interactions},
    8638   pages = {917-930},
    8639   journal = {Structure},
    8640   volume = {9},
    8641   author = {Martin, C. san and Burnett, R.M. and Hass, F. de and Heinkel, R. and Rutten, T. and Fuller, S.D. and Butcher, S.J. and Bamford, D.H.}
    8642 }
    8643 @article{Cowley1969,
    8644   number = {2},
    8645   year = {1969},
    8646   title = {Image contrast in a transmission scanning electron microscope},
    8647   pages = {58-59},
    8648   journal = {Applied Physics Letters},
    8649   volume = {15},
    8650   author = {Cowley, J.M.}
    8651 }
    8652 @article{Rivetti2001,
    8653   number = {1-2},
    8654   year = {2001},
    8655   title = {Accurate length determination of {DNA} molecules visualized by atomic force microscopy: evidence for a partial {B-} to {A-form} transition on mica},
    8656   pages = {55-66},
    8657   journal = {Ultramicroscopy},
    8658   volume = {87},
    8659   author = {Rivetti, C. and Codeluppi, S.}
    8660 }
    8661 @article{Aert2004,
    8662   year = {2004},
    8663   title = {How to optimize the experimental design of quantitative atomic resolution {TEM} experiments?},
    8664   pages = {425-429},
    8665   journal = {Micron},
    8666   volume = {35},
    8667   author = {Aert, S. van and Dekker, A.J. den and Dyck, D. van}
    8668 }
    8669 @book{Fraleigh1994,
    8670   edition = {5th},
    8671   year = {1994},
    8672   title = {A First Course in Abstract Algebra},
    8673   publisher = {Addison-Wesley},
    8674   author = {Fraleigh, J.B.}
    8675 }
    8676 @article{Duffin1952,
    8677   month = {March},
    8678   year = {1952},
    8679   title = {A Class of Nonharmonic {Fourier} Series},
    8680   pages = {341--366},
    8681   journal = {Transactions of the American Mathematical Society},
    8682   volume = {72},
    8683   author = {Duffin, R.J. and Schaeffer, A.C.}
    8684 }
    8685 @article{Aert2002,
    8686   year = {2002},
    8687   title = {High-resolution electron microscopy and electron tomography: resolution versus precision},
    8688   pages = {21-33},
    8689   journal = {Journal of Structural Biology},
    8690   volume = {138},
    8691   author = {Aert, S. van and Dekker, A.J. den and Dyck, D. van and Bos, A. van den}
    8692 }
    8693 @article{Cootes2001,
    8694   number = {6},
    8695   month = {June},
    8696   year = {2001},
    8697   title = {Active Appearance Models},
    8698   pages = {681--685},
    8699   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    8700   volume = {23},
    8701   author = {Cootes, T.F. and Edwards, G.J. and Taylor, C.J.}
    8702 }
    8703 @article{Hilfer1991,
    8704   number = {1},
    8705   month = {July},
    8706   year = {1991},
    8707   title = {Geometric and Dielectric Characterization of Porous Media},
    8708   pages = {60--75},
    8709   journal = {Physical Review B},
    8710   volume = {44},
    8711   author = {Hilfer, R.}
    8712 }
    8713 @article{Hilfer1992,
    8714   number = {13},
    8715   month = {April},
    8716   year = {1992},
    8717   title = {Local-Porosity Theory for Flow in Porous Media},
    8718   pages = {7115--7121},
    8719   journal = {Physical Review B},
    8720   volume = {45},
    8721   author = {Hilfer, R.}
    8722 }
    8723 @article{Rieger2004c,
    8724   year = {2004},
    8725   title = {Alignment of the Cell Nucleus From Labeled Proteins Only for {4D} In Vivo Imaging},
    8726   pages = {142-150},
    8727   journal = {Microscopy Research and Technique},
    8728   volume = {64},
    8729   author = {Rieger, B. and Molenaar, C. and Dirks, R.W. and Vliet, L.J.}
    8730 }
    8731 @unpublished{VerbeekXXXX,
    8732   title = {Line and Edge Detection by Symmetry Filters},
    8733   author = {Verbeek, P.W.}
    8734 }
    8735 @article{Heertje1998,
    8736   number = {31},
    8737   year = {1998},
    8738   title = {Liquid Crystalline Phases in the Structuring of Food Products},
    8739   pages = {387--396},
    8740   journal = {Lebensmittel-Wissenschaft und Technologie},
    8741   author = {Heertje, I. and Roijers, E.C. and Hendrikx, H.A.C.M.}
    8742 }
    8743 @article{Ritchie1974,
    8744   number = {7},
    8745   month = {July},
    8746   year = {1974},
    8747   title = {The {UNIX} Time-Sharing System},
    8748   pages = {365--375},
    8749   journal = {Communications of the {ACM}},
    8750   volume = {17},
    8751   author = {Ritchie, D.M. and Thompson, K.}
    8752 }
    8753 @inproceedings{Blanc1995,
    8754   year = {1995},
    8755   title = {{X}-Splines: A Spline Model Designed for the End-User},
    8756   booktitle = {Proceedings of SIGGRAPH},
    8757   pages = {377--386},
    8758   author = {Blanc, C. and Schlick, C.}
    8759 }
    8760 @article{Zwiggelaar1999,
    8761   number = {1},
    8762   year = {1999},
    8763   title = {Model-based Detection of Spiculated Lesions in Mammograms},
    8764   pages = {39-62},
    8765   journal = {Medical Image Analysis},
    8766   volume = {3},
    8767   author = {Zwiggelaar, R. and Parr, T. and Schumm, J.E. and Hutt, I.W. and Taylor, C.J. and Astley, S.M. and Boggis, R.M.}
    8768 }
    8769 @article{Pothuaud2000,
    8770   month = {August},
    8771   year = {2000},
    8772   title = {A New Method for Three-Dimensional Skeleton Graph Analysis of Porous Media: Application to Trabecular Bone Microarchitecture},
    8773   pages = {149--161},
    8774   journal = {Journal of Microscopy},
    8775   volume = {199, Pt 2},
    8776   author = {Pothuaud, L. and Porion, P. and Lespessailles, E. and Benhamou, C.L. and Levitz, P.}
    8777 }
    8778 @inproceedings{Zwiggelaar1998,
    8779   series = {Lecture Notes in Computer Science},
    8780   year = {1998},
    8781   title = {Abnormal Masses in Mammograms: Detection Using Scale-Orientation Signatures},
    8782   booktitle = {Medical Image Computing and Computer-Assisted Intervention - MICCAI'98, Proc. 1st Int. Conf. (Cambridge, MA, USA, Oct.11-13)},
    8783   volume = {1496},
    8784   address = {Berlin},
    8785   publisher = {Springer Verlag},
    8786   author = {Zwiggelaar, R. and Taylor, C.J.}
    8787 }
    8788 @article{Besag1974,
    8789   year = {1974},
    8790   title = {Spatial Interaction and the Statistical Analysis of Lattice Systems},
    8791   pages = {192--236},
    8792   journal = {Journal of the Royal Statistical Society, Series B},
    8793   volume = {36},
    8794   author = {Besag, J.E.}
    8795 }
    8796 @inproceedings{SHORTGlas2001,
    8797   series = {Lecture Notes on Computer Science},
    8798   year = {2001},
    8799   title = {Assessment of Center of Rotation of the Glenohumeral Joint by a Modified {H}ough Transform},
    8800   volume = {2208},
    8801   author = {Glas, M. van der and Vos, F.M. and Vossepoel, A.M.}
    8802 }
    8803 @article{Liang2002,
    8804   year = {2002},
    8805   title = {{IMIRS}: a high-resolution 3D reconstruction pachage integrated with a relational image database},
    8806   pages = {292-304},
    8807   journal = {Journal of Structural Biology},
    8808   volume = {137},
    8809   author = {Liang, Y. and Ke, E.Y. and Zhou, Z.H.}
    8810 }
    8811 @article{Wang2005,
    8812   year = {2005},
    8813   title = {An iterative Fourier-Bessel algorithm for reconstruction of helical structures with severe Bessel overlap},
    8814   pages = {65-78},
    8815   journal = {Journal of Structural Biology},
    8816   volume = {149},
    8817   author = {Wang, H.-W. and Nogales, E.}
    8818 }
    8819 @article{Milanfar1999,
    8820   number = {9},
    8821   year = {1999},
    8822   title = {A Model of the Effect on Image Motion in the Radon Transform Domain},
    8823   pages = {1276--1281},
    8824   journal = {IEEE Transaction on Image Processing},
    8825   volume = {8},
    8826   annote = {key_radon},
    8827   author = {P. Milanfar}
    8828 }
    8829 @article{Lee1997,
    8830   number = {5},
    8831   month = {May},
    8832   year = {1997},
    8833   title = {Adaptive Basis Matrix for the Morphological Function Processing Opening and Closing},
    8834   pages = {769--774},
    8835   journal = {IEEE Transactions on Image Processing},
    8836   volume = {6},
    8837   author = {Lee, Kyung-Hoon and Morales, Aldo and Ko, Sung-Jea}
    8838 }
    8839 @article{DeRosier2000,
    8840   number = {2},
    8841   year = {2000},
    8842   title = {Correction of high-resolution data for curvature of the {Ewald} sphere},
    8843   pages = {83-98},
    8844   journal = {Ultramicrosocpy},
    8845   volume = {81},
    8846   author = {DeRosier, D.J.}
    8847 }
    8848 @article{Jansen1993,
    8849   year = {1993},
    8850   title = {Analysis of Grey Level Histograms by using Statistical Methods for Mixtures of Distributions},
    8851   pages = {585--590},
    8852   journal = {Pattern Recognition Letters},
    8853   volume = {14},
    8854   author = {Jansen, R.C. and Reinink, K. and Heijden, G.W.A.M. van der}
    8855 }
    8856 @article{Lee1999,
    8857   number = {1},
    8858   month = {October},
    8859   year = {1999},
    8860   title = {Grouping ., -, {$\rightarrow$}, ?, into Regions, Curves, and Junctions},
    8861   pages = {54--69},
    8862   journal = {Computer Vision and Image Understanding},
    8863   volume = {76},
    8864   author = {Lee, M.S. and Medioni, G.}
    8865 }
    8866 @article{Schellman1995,
    8867   number = {1},
    8868   year = {1995},
    8869   title = {Static contributions to the persistence length of {DNA} and dynamic contributions to {DNA} curvature},
    8870   pages = {95-114},
    8871   journal = {Biophysical Chemistry},
    8872   volume = {55},
    8873   author = {Schellman, J.A. and Harvey, S.C.}
    8874 }
    8875 @article{Bigun1994a,
    8876   number = {1},
    8877   month = {January},
    8878   year = {1994},
    8879   title = {{N}-folded Symmetries by Complex Moments in {Gabor} Space and their Application to Unsupervised Texture Segmentation},
    8880   pages = {80--87},
    8881   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    8882   volume = {16},
    8883   author = {{Big\"un}, J. and Hans du Buf, J.M.}
    8884 }
    8885 @inproceedings{Danielsson1980a,
    8886   month = {December},
    8887   year = {1980},
    8888   title = {Rotation-Invariant Linear Operators with Directional Response},
    8889   booktitle = {Proceedings of the 5th international conference on Pattern Recognition (Miami Beach, Florida)},
    8890   pages = {1171--1176},
    8891   volume = {2},
    8892   author = {Danielsson, P.-E.}
    8893 }
    8894 @article{Heintzmann2003,
    8895   number = {7},
    8896   year = {2003},
    8897   title = {On resolution enhancement by subtraction of confocal signals taken at different pinhole sizes},
    8898   pages = {293-300},
    8899   journal = {Micron},
    8900   volume = {34},
    8901   author = {Heintzmann, R. and Sarafis, V. and Munroe, P. and Nailon, J. and Hanley, Q.S. and Jovin, T.M.}
    8902 }
    8903 @article{Arnison2002,
    8904   year = {2002},
    8905   title = {A 3D vectorial optical transfer function suitable for arbitrary pupil functions},
    8906   pages = {53-63},
    8907   journal = {Optics Communications},
    8908   volume = {211},
    8909   author = {Arnison, M.R. and Sheppard, C.J.R.}
    8910 }
    8911 @article{Heintzmann2002,
    8912   number = {8},
    8913   year = {2002},
    8914   title = {Saturated patterned excitation microscopy concept for optical resolution improvement},
    8915   pages = {1599-1609},
    8916   journal = {Journal of Optical Society of America A},
    8917   volume = {19},
    8918   author = {Heintzmann, R. and Jovin, T.M. and Cremer, C.}
    8919 }
    8920 @inproceedings{Yu2000,
    8921   year = {2000},
    8922   title = {A New 3{D} Orientation Steerable Filter},
    8923   booktitle = {Symposium {f\"ur} Mustererkennung, DAGM 2000, Kiel, Germany},
    8924   pages = {203--212},
    8925   publisher = {Springer Verlag},
    8926   author = {Yu, W. and Daniilidis, K. and Sommer, G.}
    8927 }
    8928 @article{Yu2001,
    8929   number = {2},
    8930   month = {February},
    8931   year = {2001},
    8932   title = {Approximate Orientation Steerability Based on Angular Gaussians},
    8933   pages = {193--205},
    8934   journal = {IEEE Transactions on Image Processing},
    8935   volume = {10},
    8936   author = {Yu, W. and Daniilidis, K. and Sommer, G.}
    8937 }
    8938 @inbook{Arnison2003,
    8939   series = {Optical imaging and microscopy - Techniques and Advanced Systems},
    8940   year = {2003},
    8941   title = {Wavefront Coding Fluorescence Microscopy Using High Aperture Lenses},
    8942   editor = {{T\"or\"ork}, P. and Kao, F.J.},
    8943   address = {Heidelberg, },
    8944   publisher = {Springer-Verlag},
    8945   author = {Arnison, M.R. and Cogswell, C.J. and Sheppard, C.J.R. and {T\"or\"ork}, P.}
    8946 }
    8947 @article{Heintzmann2004,
    8948   year = {2004},
    8949   title = {Double-pass Fourier transform imaging spectroscopy},
    8950   pages = {753-763},
    8951   journal = {Optics Express},
    8952   volume = {12},
    8953   author = {Heintzmann, R. and Lidke, K.A. and Jovin, T.M.}
    8954 }
    8955 @article{Yu2003,
    8956   number = {5},
    8957   year = {2003},
    8958   title = {Three Dimensional Orientation Signatures with Conic Kernel Filtering for Multiple Motion Analysis},
    8959   pages = {447--458},
    8960   journal = {Image and Vision Computing},
    8961   volume = {21},
    8962   author = {Yu, W. and Sommer, G. and Daniilidis, K.}
    8963 }
    8964 @article{Hyun2000,
    8965   year = {2000},
    8966   title = {On the Level Lines and Geometry of Vector Valued Images},
    8967   pages = {241--243},
    8968   journal = {IEEE Signal Processing Letters},
    8969   volume = {7},
    8970   author = {Hyun Chung, D. and Sapiro, G.}
    8971 }
    8972 @article{Schellman1974,
    8973   number = {1},
    8974   year = {1974},
    8975   title = {Flexibility of {DNA}},
    8976   pages = {217-226},
    8977   journal = {Biopolymers},
    8978   volume = {13},
    8979   author = {Schellman, J.A.}
    8980 }
    8981 @article{Mastronarde1997,
    8982   year = {1997},
    8983   title = {Dual-Axis Tomography: An Approach with Alignment Methods That Preserve Resolution},
    8984   pages = {343-352},
    8985   journal = {Journal of Structural Biology},
    8986   volume = {120},
    8987   author = {Mastronarde, D.N.}
    8988 }
    8989 @article{Verveer2000,
    8990   year = {2000},
    8991   title = {Global Analysis of Fluorescence Lifetime Imaging Microscopy Data},
    8992   pages = {2127-2137},
    8993   journal = {Biophysical Journal},
    8994   volume = {78},
    8995   author = {Verveer, P.J. and Squire, A. and Bastiaens, P.I.H.}
    8996 }
    8997 @article{Hermann1993,
    8998   month = {April},
    8999   year = {1993},
    9000   title = {Determination of Microstructural Parameters of Random Spatial Surface Fractals by Measuring Chord Length Distributions},
    9001   pages = {87--93},
    9002   journal = {Journal of Microscopy},
    9003   volume = {170, Pt 1},
    9004   author = {Hermann, H. and Ohser, J.}
    9005 }
    9006 @article{Kuwahara1976,
    9007   year = {1976},
    9008   title = {Processing of RI-angiocardiographic images},
    9009   pages = {187-203},
    9010   journal = {Digital Processing of Biomedical Images},
    9011   author = {Kuwahara, M. and Hachimura, K. and Eiho, S. and Kinoshita, M.}
    9012 }
    9013 @article{Luo1998,
    9014   number = {4},
    9015   year = {1998},
    9016   title = {Iterative Multilevel Thresholding and Splitting for Three-Dimensional Segmentation of Live Cell Nuclei Using Laser Scanning Confocal Microscopy},
    9017   pages = {151--162},
    9018   journal = {Journal of Computer-Assisted Microscopy},
    9019   volume = {10},
    9020   author = {Luo, D. and Barker, J. and McGrath, J.C. and Daly, C.J.}
    9021 }
    9022 @article{Jaffer1993,
    9023   month = {September},
    9024   year = {1993},
    9025   title = {Algebra and the Lambda Calculus},
    9026   pages = {36--40},
    9027   journal = {Dr. Dobbs's Journal},
    9028   author = {Jaffer, A.}
    9029 }
    9030 @book{Stoecker2000,
    9031   edition = {4},
    9032   year = {2000},
    9033   title = {Taschenbuch der {Physik}},
    9034   address = {Frankfurt (Main)},
    9035   publisher = {Verlag Harri Deutsch},
    9036   author = {{St\"ocker}, H.}
    9037 }
    9038 @article{Mouche2001,
    9039   year = {2001},
    9040   title = {Lumbricus terrestris Hemoglobin - The Architecture of Linker Chains and Structural Variation of the Central Toroid},
    9041   pages = {176-192},
    9042   journal = {Journal of Structural Biology},
    9043   volume = {133},
    9044   author = {Mouche, F. and Boisset, N. and Penczek, P.A.}
    9045 }
    9046 @article{Mouche2003,
    9047   year = {2003},
    9048   title = {Automated three-dimensional reconstruction of keyhole limpet hemocyanin type 1},
    9049   pages = {301-312},
    9050   journal = {Journal of Structural Biology},
    9051   volume = {144},
    9052   author = {Mouche, F. and Zhu, Y. and Pulokas, J. and Potter, C.S. and Carragher, B.}
    9053 }
    9054 @article{Knuth1987,
    9055   number = {4},
    9056   month = {October},
    9057   year = {1987},
    9058   title = {Digital Halftones by Dot Diffusion},
    9059   pages = {245--273},
    9060   journal = {ACM Transactions on Graphics},
    9061   volume = {6},
    9062   author = {Knuth, D.E.}
    9063 }
    9064 @article{Scharstein2002,
    9065   number = {1},
    9066   month = {April-June},
    9067   year = {2002},
    9068   title = {A Taxonomy and Evaluation of Dense Two-Frame Stereo Correspondence Algorithms},
    9069   pages = {7--42},
    9070   journal = {International Journal of Computer Vision},
    9071   volume = {47},
    9072   author = {Scharstein, D. and Szeliski, R.}
    9073 }
    9074 @article{Teuner1995,
    9075   number = {6},
    9076   month = {June},
    9077   year = {1995},
    9078   title = {Unsupervised Texture Segmentation of Images Using Tuned Matched Gabor Filters},
    9079   pages = {863--870},
    9080   journal = {IEEE Transactions on Image Processing},
    9081   volume = {4},
    9082   author = {Teuner, A. and Pichler, O. and Hosticka, B.J.}
    9083 }
    9084 @article{Kubitscheck2002,
    9085   number = {5-6},
    9086   year = {2002},
    9087   title = {Single Protein Molecules Visualized and Tracked in the Interior of Eukaryotic Cells},
    9088   pages = {267-274},
    9089   journal = {Single Molecule},
    9090   volume = {3},
    9091   author = {Kubitscheck, U.}
    9092 }
    9093 @article{Wigner1932,
    9094   number = {5},
    9095   month = {June},
    9096   year = {1932},
    9097   title = {On the Quantum Correction For Thermodynamic Equilibrium},
    9098   pages = {749--759},
    9099   journal = {Physical Review},
    9100   volume = {40},
    9101   author = {Wigner, E.}
    9102 }
    9103 @phdthesis{Gokstorp1995,
    9104   year = {1995},
    9105   title = {Depth Computation in Robot Vision},
    9106   address = {{Link\"oping}, Sweden},
    9107   school = {{Link\"oping} University},
    9108   author = {{G\"okstorp}, M.}
    9109 }
    9110 @article{Zuccheri2001,
    9111   number = {6},
    9112   year = {2001},
    9113   title = {Mapping the intrinsic curvature and flexibility along the {DNA} chain},
    9114   pages = {3074-3079},
    9115   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    9116   volume = {98},
    9117   author = {Zuccheri, G. and Scipioni, A. and Cavaliere, V. and Gargiulo, G. and Sanits, P. de and Samori, B. }
    9118 }
    9119 @article{Singleton1969,
    9120   number = {2},
    9121   month = {June},
    9122   year = {1969},
    9123   title = {An Algorithm for Computing the Mixed Radix Fast {Fourier} Transform},
    9124   pages = {93--103},
    9125   journal = {IEEE Transactions on Audio and Electroacoustics},
    9126   volume = {17},
    9127   annote = {key_fft},
    9128   author = {Singleton, R.C.}
    9129 }
    9130 @article{Daubechies1990,
    9131   number = {5},
    9132   month = {September},
    9133   year = {1990},
    9134   title = {The Wavelet Transform, Time-Frequency Localization and Signal Analysis},
    9135   pages = {961--1005},
    9136   journal = {IEEE Transactions on Information Theory},
    9137   volume = {36},
    9138   author = {Daubechies, I.}
    9139 }
    9140 @inproceedings{Dubowy2005,
    9141   series = {IEEE International Conference on Image Processing},
    9142   year = {2005},
    9143   title = {An approach to the correction of distance-dependent defocus in electron microscopic reconstruction},
    9144   pages = {748-751},
    9145   volume = {3},
    9146   author = {Dubowy, J.N. and Herman, G.T.}
    9147 }
    9148 @article{Whittaker1934,
    9149   year = {1934},
    9150   title = {On Lidstone's Series and Two-point Expansions of Analytic Functions},
    9151   pages = {451--469},
    9152   journal = {Proceedings London Math. Soc. (2)},
    9153   volume = {36},
    9154   author = {Whittaker, J.M.}
    9155 }
    9156 @article{Unser2000,
    9157   number = {4},
    9158   month = {April},
    9159   year = {2000},
    9160   title = {Sampling -- 50 Years after {Shannon}},
    9161   pages = {569--587},
    9162   journal = {Proceedings of the IEEE},
    9163   volume = {88},
    9164   author = {Unser, M.}
    9165 }
    9166 @article{Edelman1999,
    9167   number = {3},
    9168   year = {1999},
    9169   title = {The Future Fast {Fourier} Transform?},
    9170   pages = {1094--1114},
    9171   journal = {SIAM Journal on Scientific Computing},
    9172   volume = {20},
    9173   annote = {key_fft},
    9174   author = {Edelman, A. and McCorquodale, P. and Toledo, S.}
    9175 }
    9176 @book{Jahne1997a,
    9177   year = {1997},
    9178   title = {Practical handbook on Image Processing for Scientific Applications},
    9179   publisher = {CRC Press},
    9180   author = {{J\"ahne}, B.}
    9181 }
    9182 @article{Brox2006,
    9183   year = {2006},
    9184   title = {Nonlinear structure tensor},
    9185   pages = {41-55},
    9186   journal = {Image and Vision Computing},
    9187   volume = {24},
    9188   author = {Brox, T. and Weickert, J. and Burgeth, B. and Mrazek, P.}
    9189 }
    9190 @article{Zheng2004,
    9191   year = {2004},
    9192   title = {An improved strategy for automated electron microscopic tomography},
    9193   pages = {91-101},
    9194   journal = {Journal of Structural Biology},
    9195   volume = {147},
    9196   author = {Zheng, Q.S. and Braunfeld, M.B. and Sedat, J.W. and Agard, D.A.}
    9197 }
    9198 @article{Chepic1990,
    9199   number = {3},
    9200   year = {1990},
    9201   title = {Auger ionization of semiconductor quantum drops in a glass matrix},
    9202   pages = {113-127},
    9203   journal = {Journal of Luminescence},
    9204   volume = {47},
    9205   author = {Chepic, D.I. and Efros, A.L. and Ekimov, A.I. and Ivanov, M.G. and Kharchenko, V.A. and Kudriavtsev, I.A. and Yazeva, T.V.}
    9206 }
    9207 @article{Frenken1993,
    9208   year = {1993},
    9209   title = {Thermal Roughening Investigated by Scanning Tunnelling Microscopy},
    9210   pages = {27--36},
    9211   journal = {Faraday Discussions},
    9212   volume = {95},
    9213   author = {Frenken, J.W.M. and Kuipers, L. and Sanders, J.B.}
    9214 }
    9215 @article{Hilton1995,
    9216   number = {8},
    9217   year = {1995},
    9218   title = {Statistics of surface curvature estimates},
    9219   pages = {1201--1221},
    9220   journal = {Pattern Recognition},
    9221   volume = {28},
    9222   author = {Hilton, A. and Illingworth, J. and Windeatt, T.}
    9223 }
    9224 @article{Voort1995,
    9225   year = {1995},
    9226   title = {Restoration of confocal images for quantitative image analysis},
    9227   pages = {165--181},
    9228   journal = {J. Microscopy},
    9229   volume = {178},
    9230   author = {T.M. van der Voort and K.C. Strassers}
    9231 }
    9232 @article{Schatzman1996,
    9233   number = {3},
    9234   month = {March},
    9235   year = {1996},
    9236   title = {Index Mappings for the Fast {Fourier} Transform},
    9237   pages = {717--719},
    9238   journal = {IEEE Transactions on Signal Processing},
    9239   volume = {44},
    9240   annote = {key_fft},
    9241   author = {Schatzman, J.C.}
    9242 }
    9243 @misc{WeickertXXXX,
    9244   title = {Nonlinear Diffusion Scale-Spaces},
    9245   author = {Weickert, J.}
    9246 }
    9247 @book{Reimer1997,
    9248   edition = {4th},
    9249   year = {1997},
    9250   title = {Transition Electron Microscopy},
    9251   note = {sold out, reprint 2006},
    9252   address = {Berlin},
    9253   publisher = {Springer Verlag},
    9254   author = {Reimer, L.}
    9255 }
    9256 @article{Fukano2003,
    9257   number = {19},
    9258   year = {2003},
    9259   title = {Whole-Field Fluorescence Microscope with Digital Micromirror Device: Imaging of Biological Samples},
    9260   pages = {4119-4124},
    9261   journal = {Applied Optics},
    9262   volume = {42},
    9263   author = {Fukano, T. and Miyawaki, A.}
    9264 }
    9265 @article{Lifshitz1990,
    9266   number = {6},
    9267   month = {June},
    9268   year = {1990},
    9269   title = {A Multiresolution Hierarchical Approach to Image Segmentation Based on Intensity Extrema},
    9270   pages = {529--540},
    9271   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9272   volume = {12},
    9273   author = {Lifshitz, L.M. and Pizer, S.M.}
    9274 }
    9275 @article{Zenzo1986,
    9276   year = {1986},
    9277   title = {A Note on the Gradient of a Multi-Image},
    9278   pages = {116--125},
    9279   journal = {Computer Vision, Graphics and Image Processing},
    9280   volume = {33},
    9281   author = {Zenzo, S. di}
    9282 }
    9283 @article{Ranson2001,
    9284   year = {2001},
    9285   title = {{ATP}-Bound States of {GroEL} Captured by Cryo-Electron Microscopy},
    9286   pages = {869-879},
    9287   journal = {Cell},
    9288   volume = {107},
    9289   author = {Ranson, N.A. and Farr, G.W. and Roseman, A.M. and Gowen, B. and Fenton, W.A. and Horwich, A.L. and Saibil, H.R.}
    9290 }
    9291 @article{Fukano2004,
    9292   year = {2004},
    9293   title = {Similar diffusibility of membrane proteins across the axon-soma and dendrite-soma boundaries revealed by a novel {FRAP} technique},
    9294   pages = {12-18},
    9295   journal = {Journal of Structural Biology},
    9296   volume = {147},
    9297   author = {Fukano, T. and Hama, H. and Miyawaki, A.}
    9298 }
    9299 @article{Pape1999,
    9300   number = {5},
    9301   month = {September/October},
    9302   year = {1999},
    9303   title = {Permeability prediction based on fractal pore-space geometry},
    9304   pages = {1447--1460},
    9305   journal = {Geophysics},
    9306   volume = {64},
    9307   author = {Pape, H. and Clauser, C. and Iffland, J.}
    9308 }
    9309 @article{Ritchie1984,
    9310   number = {6},
    9311   month = {October},
    9312   year = {1984},
    9313   title = {The Evolution of the Unix Time-sharing System},
    9314   pages = {1577-1593},
    9315   journal = {{AT\&T} Bell Laboratories Technical Journal},
    9316   volume = {63},
    9317   author = {Ritchie, D.M.}
    9318 }
    9319 @article{Streekstra2001,
    9320   number = {3},
    9321   year = {2001},
    9322   title = {Scale dependent differential geometry for the measurement of center line and diameter in 3d curvilinear structures},
    9323   pages = {177-189},
    9324   journal = {International Journal of Computer Vision},
    9325   volume = {42},
    9326   author = {Streekstra, G.J. and Boomgaard, R. van den and Smeulders, A.W.M.}
    9327 }
    9328 @article{Jares-Erijman1996,
    9329   number = {3},
    9330   year = {1996},
    9331   title = {Determination of DNA Helical Handedness by Fluorescence Resonance Energy Transfer},
    9332   pages = {597-617},
    9333   journal = {Journal of Molecular Biology},
    9334   volume = {257},
    9335   author = {Jares-Erijman, E.A. and Jovin, T.M.}
    9336 }
    9337 @article{Dologlou1991,
    9338   number = {7},
    9339   month = {July},
    9340   year = {1991},
    9341   title = {Physical Interpretation of Signal Reconstruction from Reduced Rank Matrices},
    9342   pages = {1681--1682},
    9343   journal = {IEEE Transactions on Signal Processing},
    9344   volume = {39},
    9345   author = {Dologlou, I. and Carayannis, G.}
    9346 }
    9347 @article{Dologlou1996,
    9348   number = {2},
    9349   year = {1996},
    9350   title = {Projection-based Rank Reduction Algorithms for Multichannel Modeling and Image Compression},
    9351   pages = {97--109},
    9352   journal = {Signal Processing},
    9353   volume = {48},
    9354   author = {Dologlou, I. and Pesquet, J.-C. and Skowronski, J.}
    9355 }
    9356 @article{Sethi1987,
    9357   year = {1987},
    9358   title = {Finding trajectories of feature points in monocular image sequences},
    9359   pages = {56--73},
    9360   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9361   volume = {9},
    9362   author = {Sethi, I.K. and Jain, R. }
    9363 }
    9364 @phdthesis{Whitaker1993a,
    9365   year = {1993},
    9366   title = {Geometry-Limited Diffusion},
    9367   school = {The University of North Carolina, Chapel Hill, North Carolina},
    9368   author = {Whitaker, R.T.}
    9369 }
    9370 @article{Unser1995a,
    9371   number = {3},
    9372   year = {1995},
    9373   title = {Enlargement or reduction of digital images with minimum loss of information},
    9374   pages = {247-258},
    9375   journal = {IEEE Transactions on Image Processing},
    9376   volume = {4},
    9377   author = {Unser, Michael and Aldroubi, Akram and Eden, Murray}
    9378 }
    9379 @article{Hubel1962,
    9380   year = {1962},
    9381   title = {Receptive fields, binocular interaction and functional architecture in the cat's visual cortex},
    9382   pages = {106-154},
    9383   journal = {The Journal of Physiology},
    9384   volume = {160},
    9385   author = {Hubel, D.H. and Wiesel, T.N.}
    9386 }
    9387 @article{Young1985,
    9388   year = {1985},
    9389   title = {Estimation of Sampling Errors},
    9390   pages = {273--275},
    9391   journal = {Cytometry},
    9392   volume = {6},
    9393   author = {Young, I.T.}
    9394 }
    9395 @phdthesis{Nordberg1994a,
    9396   year = {1994},
    9397   title = {Signal Representation and Processing using Operator Groups},
    9398   address = {{Link\"oping}, Sweden},
    9399   school = {{Link\"oping University}},
    9400   author = {Nordberg, K.}
    9401 }
    9402 @article{Young1988,
    9403   number = {4},
    9404   year = {1988},
    9405   title = {Sampling Density and Quantitative Microscopy},
    9406   pages = {269--275},
    9407   journal = {Analytic and Quantitative Cytology Histology},
    9408   volume = {10},
    9409   author = {Young, I.T.}
    9410 }
    9411 @article{Alvarez1992,
    9412   number = {3},
    9413   month = {June},
    9414   year = {1992},
    9415   title = {Image selective smoothing and edge detection by nonlinear diffusion {II}},
    9416   pages = {845--866},
    9417   journal = {SIAM J. Numer. Anal.},
    9418   volume = {29},
    9419   author = {Alvarez, L. and Lions, P. and Morel, J.}
    9420 }
    9421 @article{Deriche1990,
    9422   number = {1},
    9423   month = {January},
    9424   year = {1990},
    9425   title = {Fast Algorithms for Low-Level Vision},
    9426   pages = {78--87},
    9427   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9428   volume = {12},
    9429   author = {Deriche, R.}
    9430 }
    9431 @article{Sartor2001,
    9432   number = {2},
    9433   year = {2001},
    9434   title = {Morphological Operations on Color Images},
    9435   pages = {548-559},
    9436   journal = {Journal of Electronic Imaging},
    9437   volume = {10},
    9438   author = {Sartor, L. J. and Weeks, A. R.}
    9439 }
    9440 @article{Rohr1997,
    9441   year = {1997},
    9442   title = {On 3D Differential Operators for Detecting Point Landmarks},
    9443   pages = {219--233},
    9444   journal = {Image and Vision Computing},
    9445   volume = {15},
    9446   author = {Rohr, K.}
    9447 }
    9448 @inproceedings{Luengo1999,
    9449   year = {1999},
    9450   title = {Resolution Enhancement of a Sequence of Undersampled Shifted Images},
    9451   booktitle = {ASCI'99, Proc. 5th Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands)},
    9452   pages = {95--102},
    9453   editor = {Boasson, M. and Kaandorp, J.A. and Tonino, J.F.M. and Vosselman, M.G.},
    9454   author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
    9455   organization = {ASCI, Delft}
    9456 }
    9457 @article{Sandberg2003,
    9458   year = {2003},
    9459   title = {A fast reconstruction algorithm for electron microscope tomography},
    9460   pages = {61-72},
    9461   journal = {Journal of Structural Biology},
    9462   volume = {144},
    9463   author = {Sandberg, K. and Mastronarde, D.N. and Beylkin, G.}
    9464 }
    9465 @article{Grigorieff1998,
    9466   year = {1998},
    9467   title = {Three-dimensional Structure of Bovine {NADH}:Ubiquinone Oxidoreductase (Complex {I}) at {22\AA} in Ice},
    9468   pages = {1033-1046},
    9469   journal = {Journal of Molecular Biology},
    9470   volume = {277},
    9471   author = {Grigorieff, N.}
    9472 }
    9473 @inproceedings{Smith1984,
    9474   month = {March},
    9475   year = {1984},
    9476   title = {A Procedure for Designing Exact Reconstruction Filter Banks for Tree Structured Sub-Band Coders},
    9477   booktitle = {Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing},
    9478   pages = {27.1.1--27.1.4},
    9479   address = {San Diego, U.S.A.},
    9480   author = {Smith, M.J. and Barnwell, T.P.}
    9481 }
    9482 @article{Santos2000,
    9483   number = {17},
    9484   year = {2000},
    9485   title = {Model-based resolution - applying the theory in quantitative microscopy},
    9486   pages = {2948-2958},
    9487   journal = {Applied Optics},
    9488   volume = {39},
    9489   author = {Santos, A. and Young, I.T.}
    9490 }
    9491 @article{Vossepoel1988,
    9492   year = {1988},
    9493   title = {A note on distance transformations in digital images},
    9494   pages = {88-97},
    9495   journal = {Computer Vision, Graphics, and Image Processing},
    9496   volume = {43},
    9497   author = {Vossepoel, A.M.}
    9498 }
    9499 @article{Garboczi1995,
    9500   number = {1},
    9501   month = {July},
    9502   year = {1995},
    9503   title = {Geometrical percolation threshold of overlapping ellipsoids},
    9504   journal = {Physical Review E},
    9505   volume = {52},
    9506   author = {Garboczi, E.J. and Snyder, K.A. and Douglas, J.F. and Thorpe, M.F.}
    9507 }
    9508 @article{Wu2000,
    9509   number = {24},
    9510   year = {2000},
    9511   title = {Picometer Accuracy in Measuring Lattice Displacements Across Planar Faults by Interferometry in Coherent Electron Diffraction},
    9512   pages = {5126-5129},
    9513   journal = {Physical Review Letters},
    9514   volume = {85},
    9515   author = {Wu, L. and Zhu, Y. and Tafto, J.}
    9516 }
    9517 @article{Vossepoel1982,
    9518   year = {1982},
    9519   title = {Vector code probability and metrication error in the representation of straight lines of finite length},
    9520   pages = {347-364},
    9521   journal = {Computer Graphics and Image Processing},
    9522   volume = {20},
    9523   author = {Vossepoel, A.M. and Smeulders, A.W.M.}
    9524 }
    9525 @article{Lazar2003,
    9526   year = {2003},
    9527   title = {Materials science applications of {HREELS} in near edge structure analysis and low-energy loss spectroscopy},
    9528   pages = {533-546},
    9529   journal = {Ultramicroscopy},
    9530   volume = {96},
    9531   author = {Lazar, S. and Botton, G.A. and Wu, M.-Y. and Tichelaar, F.D. and Zandbergen, H.W.}
    9532 }
    9533 @article{Muller1995,
    9534   year = {1995},
    9535   title = {Delocalization in inelastic scattering},
    9536   pages = {195-213},
    9537   journal = {Ultramicroscopy},
    9538   volume = {59},
    9539   author = {Muller, D.A. and Silcox, J.}
    9540 }
    9541 @mastersthesis{Brusse1995,
    9542   month = {August},
    9543   year = {1995},
    9544   title = {Quantitative structuuranalyse van aardlagen op basis van boorgatbeelden},
    9545   note = {in {D}utch},
    9546   school = {Delft University of Technology},
    9547   author = {Brusse, H.}
    9548 }
    9549 @book{JAEHNE,
    9550   year = {1997},
    9551   title = {Practical Handbook on Image Processing for Scientific Applications},
    9552   address = {New York},
    9553   publisher = {CRC Press},
    9554   author = {{J\"ahne}, B.}
    9555 }
    9556 @article{Lazar2004,
    9557   year = {2004},
    9558   title = {Investigation of hexagonal and cubic {GaN} by high-resolution electron energy-loss spectroscopy and density functional theory},
    9559   pages = {249-257},
    9560   journal = {Ultramicroscopy},
    9561   volume = {98},
    9562   author = {Lazar, S. and {H\'ebert}, C. and Zandbergen, H.W.}
    9563 }
    9564 @article{Huang1998,
    9565   year = {1998},
    9566   title = {The Empirical Mode Decomposition and the {Hilbert} Spectrum for Nonlinear and Non-stationary Time Series Analysis},
    9567   pages = {903--995},
    9568   journal = {Proceedings of the Royal Society of London A},
    9569   volume = {454},
    9570   author = {Huang, N.E. and Shen, Z. and Long, S.R. and Wu, M.C. and Shih, H.H. and Zheng, Q. and Yen, N.-C. and Tung, C.C. and Liu, H.H.}
    9571 }
    9572 @article{Huang1995,
    9573   number = {1},
    9574   month = {February},
    9575   year = {1995},
    9576   title = {Motion Estimation method using a 3D steerable filter},
    9577   pages = {21--32},
    9578   journal = {Image and Vision Computing},
    9579   volume = {13},
    9580   author = {Huang, C.-L. and Chen, Y.-T.}
    9581 }
    9582 @article{Peh2002,
    9583   number = {10},
    9584   year = {2002},
    9585   title = {Synergizing spatial and temporal texture},
    9586   pages = {1179--1191},
    9587   journal = {IEEE Transactions on Image Processing},
    9588   volume = {11},
    9589   author = {Peh, C.-H. and Loong-Fah Cheong}
    9590 }
    9591 @article{Lee1983,
    9592   year = {1983},
    9593   title = {Digital Image Smoothing and the Sigma Filter},
    9594   pages = {255--270},
    9595   journal = {Computer Vision, Graphics, and Image Processing},
    9596   volume = {24},
    9597   author = {Lee, J.-S.}
    9598 }
    9599 @inproceedings{Buhr2003,
    9600   month = {16-18 February},
    9601   year = {2003},
    9602   title = {Simple method for modulation transfer function determination of digital imaging detectors from edge images},
    9603   booktitle = {Proceedings of SPIE},
    9604   volume = {5030,3},
    9605   address = {San Diego, California, USA},
    9606   author = {Buhr, E. and {G\"unther}-Kohfahl, S. and Neitzel, U.}
    9607 }
    9608 @inproceedings{Lee1984,
    9609   year = {1984},
    9610   title = {{FCT} - a fast cosine transform},
    9611   booktitle = {Proc. IEEE ICASSP},
    9612   pages = {28A.3.1-28A.3.4},
    9613   annote = {key_fft},
    9614   author = {Lee, B.G.}
    9615 }
    9616 @article{Feret1931,
    9617   year = {1931},
    9618   title = {La Grosseur des Grains},
    9619   journal = {Assoc. Intern. Essais Math. 2D, Zurich},
    9620   author = {Feret, L.R.}
    9621 }
    9622 @article{Bunt2004,
    9623   year = {2004},
    9624   title = {Visualization of Molecular Activities Inside Living Cells with Fluorescent Labels},
    9625   pages = {205-280},
    9626   journal = {International Review of Cytology},
    9627   volume = {237},
    9628   author = {Bunt, G. and Wouters, F.S.}
    9629 }
    9630 @article{Vaidyanathan1987,
    9631   number = {3},
    9632   month = {July},
    9633   year = {1987},
    9634   title = {Quadrature Mirror Filter Banks, M-Band Extensions and Perfect-Reconstruction Techniques},
    9635   pages = {4--20},
    9636   journal = {IEEE Acoustics, Speech, and Signal Processing Magazine},
    9637   volume = {4},
    9638   author = {Vaidyanathan, P.P.}
    9639 }
    9640 @inproceedings{Knutsson2003,
    9641   series = {LNCS 2749},
    9642   month = {June 29 -July 2},
    9643   year = {2003},
    9644   title = {Loglets: Generalized Quadrature and Phase for Local Spatio-Temporal Structure Estimation},
    9645   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    9646   pages = {741-748},
    9647   editor = {{Big\"un}, J. and Gustavsson, T.},
    9648   address = {Berlin},
    9649   publisher = {Springer-Verlag},
    9650   author = {Knutsson, H. and Anderson, M.}
    9651 }
    9652 @article{Mokhtarian1992,
    9653   number = {8},
    9654   month = {August},
    9655   year = {1992},
    9656   title = {A Theory of Multiscale, Curvature-Based Shape Representation for Planar Curves},
    9657   pages = {789--805},
    9658   journal = {IEEE Transactions on Pattern Analysis and Machine Analysis},
    9659   volume = {14},
    9660   author = {Mokhtarian, F. and Machworth, A.K.}
    9661 }
    9662 @article{Lin1986,
    9663   year = {1986},
    9664   title = {Calibration of the operating parameters for an {HB5 STEM} instrument},
    9665   pages = {31-42},
    9666   journal = {Ultramicroscopy},
    9667   volume = {19},
    9668   author = {Lin, J.A. and Cowley, J.M.}
    9669 }
    9670 @article{Zack1977,
    9671   number = {7},
    9672   year = {1977},
    9673   title = {Automatic Measurement of Sister Chromatid Exchange Frequency},
    9674   pages = {741--753},
    9675   journal = {Journal of Histochemistry and Cytochemistry},
    9676   volume = {25},
    9677   author = {Zack, G.W. and Rogers, W.E. and Latt, S.A.}
    9678 }
    9679 @article{Bewersdorf2006,
    9680   year = {2006},
    9681   title = {Comparison of {I$^5$M} and {4Pi}-microscopy},
    9682   pages = {105-117},
    9683   journal = {Journal of Microscopy},
    9684   volume = {222},
    9685   author = {Bewersdorf, J. and Schmidt, R. and Hell, S.W.}
    9686 }
    9687 @inproceedings{Leung1998,
    9688   month = {June},
    9689   year = {1998},
    9690   title = {Contour Continuity in Region Based Image Segmentation},
    9691   booktitle = {5th. Euro. Conf. Computer Vision, Freiburg, Germany },
    9692   author = {Leung, T. and Malik, J.}
    9693 }
    9694 @article{Kempen2000,
    9695   number = {3},
    9696   year = {2000},
    9697   title = {Background estimation in nonlinear image restoration},
    9698   pages = {425-434},
    9699   journal = {Journal of the Optical Society of America},
    9700   volume = {17},
    9701   author = {Kempen, G.M.P. van and Vliet, L.J. van}
    9702 }
    9703 @article{Nellist2004,
    9704   year = {2004},
    9705   title = {Direct Sub-Angstrom Imaging of a Crystal Lattice},
    9706   pages = {1741},
    9707   journal = {Science},
    9708   volume = {305},
    9709   author = {Nellist, P.D. and Chisholm, M.F. and Dellby, N. and Krivanek, O.L. and Murfitt, M.F. and Szilagyi, Z.S. and Lupini, A.R. and Borisevick, A. and Sides, W.H. jr. and Pennycook, S.J. }
    9710 }
    9711 @article{Liu1997,
    9712   number = {8},
    9713   year = {1997},
    9714   title = {Dimension Estimation of Discrete-Time Fractional Brownian Motion with Application to Image Texture Classification},
    9715   pages = {1176-1184},
    9716   journal = {IEEE Transaction on Image Processing},
    9717   volume = {6},
    9718   author = {S-C. Liu and S. Chang}
    9719 }
    9720 @article{Keenan2004,
    9721   number = {3},
    9722   year = {2004},
    9723   title = {Accounting for Poisson noise in the multivariate analysis of {ToF-SIMS} spectrum images},
    9724   pages = {203-212},
    9725   journal = {Surface and Interface Analysis},
    9726   volume = {36},
    9727   author = {Keenan, M.R. and Kotula, P.G.}
    9728 }
    9729 @book{Gelfand1964,
    9730   year = {1964},
    9731   title = {Generalized Functions. Volume 1, Properties and Operations},
    9732   publisher = {Academic Press},
    9733   author = {{Gel'fand}, I.M. and Shilov, G.E.}
    9734 }
    9735 @book{Gelfand1966,
    9736   year = {1966},
    9737   title = {Generalized Functions. Volume 5, Integral Geometry and Representation Theory},
    9738   publisher = {Academic Press},
    9739   author = {{Gel'fand}, I.M. and Graev, M.I. and Vilenkin, N.Ya.}
    9740 }
    9741 @techreport{Lindeberg1998b,
    9742   number = {ISRN KTH/NA/P-98/14-SE},
    9743   month = {August},
    9744   year = {1998},
    9745   title = {Principles for Automatic Scale Selection},
    9746   address = {Stockholm, Sweden},
    9747   institution = {Computational Vision and Active Perception Laboratory, Royal Institute of Technology},
    9748   author = {Lindeberg, T.}
    9749 }
    9750 @article{Lindeberg1998a,
    9751   number = {2},
    9752   year = {1998},
    9753   title = {Edge Detection and Ridge Detection with Automatic Scale Selection},
    9754   pages = {117--154},
    9755   journal = {International Journal of Computer Vision},
    9756   volume = {30},
    9757   author = {Lindeberg, T.}
    9758 }
    9759 @article{Koenderink1999,
    9760   number = {2/3},
    9761   year = {1999},
    9762   title = {The Structure of Locally Orderless Images},
    9763   pages = {159--168},
    9764   journal = {International Journal of Computer Vision},
    9765   volume = {31},
    9766   author = {Koenderink, J.J. and Doorn, A.J. van}
    9767 }
    9768 @inproceedings{Kalitzin1997,
    9769   series = {Lecture Notes in Computer Science},
    9770   month = {July},
    9771   year = {1997},
    9772   title = {Invertible Orientation Bundles on 2D Scalar Images},
    9773   booktitle = {Proceedings of the First International Conference on Scale-Space Theory in Computer Vision},
    9774   pages = {77--88},
    9775   publisher = {Springer-Verlag},
    9776   author = {Kalitzin, S.N. and ter Haar Romeny, B.M. and Viergever, M.A.}
    9777 }
    9778 @article{Koenderink1992,
    9779   number = {6},
    9780   month = {June},
    9781   year = {1992},
    9782   title = {Generic Neighborhood Operators},
    9783   pages = {597--605},
    9784   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9785   volume = {14},
    9786   author = {Koenderink, J.J. and Doorn, A.J. van}
    9787 }
    9788 @article{Koenderink1990,
    9789   year = {1990},
    9790   title = {Receptive Field Families},
    9791   pages = {291--297},
    9792   journal = {Biological Cybernetics},
    9793   volume = {63},
    9794   author = {Koenderink, J.J. and Doorn, A.J. van}
    9795 }
    9796 @inproceedings{Haussecker1996,
    9797   series = {Proceedings in Artificial Intelligence 3},
    9798   month = {November 18--19},
    9799   year = {1996},
    9800   title = {A Tensor Approach for Local Structure Analysis in Multi-Dimensional Images},
    9801   booktitle = {Proceedings 3D Image Analysis and Synthesis},
    9802   pages = {171--178},
    9803   editor = {Girod, B. and Niemann, H. and Seidel, H.-P.},
    9804   author = {{Hau\ss ecker}, H. and {J\"ahne}, B.},
    9805   organization = {{Universit\"at} Erlangen-{N\"urnberg}}
    9806 }
    9807 @article{Kalitzin1999,
    9808   number = {2/3},
    9809   year = {1999},
    9810   title = {Invertible Apertured Orientation filters in Image Analysis},
    9811   pages = {145--158},
    9812   journal = {International Journal of Computer Vision},
    9813   volume = {31},
    9814   author = {Kalitzin, S.N. and Haar Romeny, B. ter and Viergever, M.A.}
    9815 }
    9816 @inproceedings{Haussecker1997,
    9817   series = {Informatik Aktuell},
    9818   month = {September 15-17},
    9819   year = {1997},
    9820   title = {A tensor approach for precise computation of dense displacement vector fields},
    9821   booktitle = {Proc. Mustererkennung 1997 (Braunschweig, Germany)},
    9822   pages = {199--208},
    9823   editor = {Paulus, E. and Wahl, F.M.},
    9824   publisher = {Springer},
    9825   author = {{Hau\ss ecker}, H. and {J\"ahne}, B.}
    9826 }
    9827 @inproceedings{Vliet1993a,
    9828   year = {1993},
    9829   title = {Curvature and Bending Energy in Digitized 2D and 3D Images},
    9830   booktitle = {8th Scandinavian Conference on Image Analysis, {Troms\o } Norway},
    9831   pages = {1403--1410},
    9832   author = {Vliet, L.J. van and Verbeek, P.W.}
    9833 }
    9834 @article{Cam1994,
    9835   number = {3},
    9836   year = {1994},
    9837   title = {Conformational Analysis of a 139 Base-pair {DNA} Fragment Containing a Single-stranded Break and Its Interaction with {Human Poly(ADP-ribose)} Polymerase},
    9838   pages = {1062-1071},
    9839   journal = {Journal of Molecular Biology},
    9840   volume = {235},
    9841   author = {Cam, E. le and Fack, F. and Menissier-de Murcia, J. and Cognet, J.A.H. and Barbin, A. and Sarantoglou, V. and Revet, B. and Delain, E. and Murcia, G. de}
    9842 }
    9843 @article{Digman2005,
    9844   year = {2005},
    9845   title = {Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure},
    9846   journal = {Biophysical Journal - Biophysical Letters},
    9847   author = {Digman, M.A. and Sengupta, P. and Wiseman, P.W. and Brown, C.M. and Howritz, A.R. and Grattown, E.}
    9848 }
    9849 @article{Bangham1996a,
    9850   number = {5},
    9851   year = {1996},
    9852   title = {Scale-Space From Nonlinear Filters},
    9853   pages = {520--528},
    9854   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9855   volume = {18},
    9856   author = {Bangham, J.A. and Ling, P.D. and Harvey, R.}
    9857 }
    9858 @article{Talbot2000,
    9859   month = {December},
    9860   year = {2000},
    9861   title = {Image Analysis of Insulation Mineral Fibres},
    9862   pages = {251--268},
    9863   journal = {Journal of Microscopy},
    9864   volume = {200, Pt 3},
    9865   author = {Talbot, H. and Lee, T. and Jeulin, D. and Hanton, D. and Hobbs, L.W.}
    9866 }
    9867 @article{Dietrich2004,
    9868   number = {14},
    9869   year = {2004},
    9870   title = {Nanoarrays: A Method for Performing Enzymatic Assays},
    9871   pages = {4112-4117},
    9872   journal = {Analytical Chemistry},
    9873   volume = {76},
    9874   author = {Dietrich, H.R.C. and Knoll, J. and Doel, L.R. van den and Dedem, G.W.K. van and Daran-Lapujade, P.A.S. and Vliet, L.J. van and Moerman, R. and Pronk, J.R. and Young, I.T.}
    9875 }
    9876 @inproceedings{Laptev2003,
    9877   series = {Lecture Notes on Computer Science },
    9878   year = {2003},
    9879   title = {Interest point detection and scale-selection in space-time},
    9880   booktitle = {Proceedings of the fourth Int. Conf. on Scale Space},
    9881   pages = {372-387},
    9882   editor = {Griffin, L.D. and Lillholm, M.},
    9883   volume = {2695},
    9884   address = {Isle of Skye, United Kingdom},
    9885   author = {Laptev, I. and Lindeberg, T.}
    9886 }
    9887 @article{Thomson1982,
    9888   number = {9},
    9889   month = {September},
    9890   year = {1982},
    9891   title = {Spectrum Estimation and Harmonic Analysis},
    9892   pages = {1055--1096},
    9893   journal = {Proceedings of the IEEE},
    9894   volume = {70},
    9895   author = {Thomson, D.J.}
    9896 }
    9897 @misc{Dorst1999a,
    9898   year = {1999},
    9899   title = {{Clifford} Algebra: a Practical Tool for Efficient Geometrical Representation},
    9900   note = {Tutorial presentation},
    9901   author = {Dorst, L.}
    9902 }
    9903 @phdthesis{Hansen1995,
    9904   year = {1995},
    9905   title = {Spatial Statistics for Network Structures in Processed Milk},
    9906   address = {Copenhagen, Denmark},
    9907   school = {The Royal Veterinary and Agricultural University Copenhagen},
    9908   author = {Hansen, M.B.}
    9909 }
    9910 @article{Hansen1999,
    9911   number = {1},
    9912   year = {1999},
    9913   title = {First Contact Distributions for Spatial Patterns: Regularity and Estimation},
    9914   pages = {15--33},
    9915   journal = {Advances in Applied Probability},
    9916   volume = {31},
    9917   author = {Hansen, M.B. and Baddeley, A.J. and Gill, R.D.}
    9918 }
    9919 @article{Stockman1977,
    9920   number = {11},
    9921   year = {1977},
    9922   title = {Equivalence of {Hough} Curve Detection to Template Matching},
    9923   pages = {820--822},
    9924   journal = {Communications of the {ACM}},
    9925   volume = {20},
    9926   annote = {key_radon},
    9927   author = {Stockman, G.C. and Agrawala, A.K.}
    9928 }
    9929 @article{Li1994a,
    9930   number = {12},
    9931   year = {1994},
    9932   title = {Approximation of an Arbitrary Filter and its Recursive Implementation},
    9933   pages = {1767--1774},
    9934   journal = {Pattern Recognition},
    9935   volume = {27},
    9936   author = {Li, B.C. and Ma, S.D.}
    9937 }
    9938 @article{Endres1997,
    9939   number = {1},
    9940   month = {January/February},
    9941   year = {1997},
    9942   title = {Incorporating Pore Geometry and Fluid Pressure Communication into Modeling the Elastic Behavior of Porous Rocks},
    9943   pages = {106--117},
    9944   journal = {Geophysics},
    9945   volume = {62},
    9946   author = {Endres, A.L. and Knight, R.J.}
    9947 }
    9948 @article{Hansen1997,
    9949   number = {3},
    9950   year = {1997},
    9951   title = {Understanding the {Hough} Transform: {Hough} Cell Support and its Utilization},
    9952   pages = {205--218},
    9953   journal = {Image and Vision Computing},
    9954   volume = {15},
    9955   author = {Hansen, K. and Andersen, J.D.}
    9956 }
    9957 @article{Maxwell1870,
    9958   number = {269},
    9959   year = {1870},
    9960   title = {On Hills and Dales},
    9961   pages = {421--427},
    9962   journal = {The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science},
    9963   volume = {40},
    9964   author = {Maxwell, J.C.}
    9965 }
    9966 @article{Qian2000,
    9967   year = {2000},
    9968   title = {Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials},
    9969   pages = {137-143},
    9970   journal = {Biophysical Journal},
    9971   volume = {79},
    9972   author = {Qian, H. and Elson, E.L.}
    9973 }
    9974 @article{Jain2000,
    9975   number = {1},
    9976   year = {2000},
    9977   title = {Statistical Pattern Recognition: A Review},
    9978   pages = {4--37},
    9979   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9980   volume = {22},
    9981   author = {Jain, A.K. and Duin, R.P.W. and Mao, J.}
    9982 }
    9983 @article{Watson1953,
    9984   number = {4356},
    9985   month = {April},
    9986   year = {1953},
    9987   title = {Molecular Structure of Nucleic Acids},
    9988   pages = {737--738},
    9989   journal = {Nature},
    9990   volume = {171},
    9991   author = {Watson, J.D. and Crick, F.H.C.}
    9992 }
    9993 @inproceedings{Knutsson1989kort,
    9994   year = {1989},
    9995   title = {Representing Local Structure Using Tensors },
    9996   booktitle = {SCIA'89},
    9997   pages = {244--251},
    9998   author = {Knutsson, H.}
    9999 }
    10000 @article{Chadoeuf2000,
    10001   month = {October},
    10002   year = {2000},
    10003   title = {Testing Local Dependence of Spatial Structures on Images},
    10004   pages = {32--41},
    10005   journal = {Journal of Microscopy},
    10006   volume = {200, Pt 1},
    10007   author = {Chadoeuf, J. and Brix, A. and Pierret, A. and Allard, D.}
    10008 }
    10009 @article{Brock2003,
    10010   year = {2003},
    10011   title = {Quantitative image analysis of cellular protein translocation induced by magnetic microspheres: Application to the EGF receptor},
    10012   pages = {1-11},
    10013   journal = {Cytometry Part A},
    10014   volume = {52A},
    10015   author = {Brock, R. and Jovin, T.M. }
    10016 }
    10017 @article{Costes2004,
    10018   year = {2004},
    10019   title = {Automatic and Quantitative Measurement of Protein-Protein Colocalization in Live Cells},
    10020   pages = {3993-4003},
    10021   journal = {Biophysical Journal},
    10022   volume = {86},
    10023   author = {Costes, S.V. and Daelemans, D. and Cho, E.H. and Dobbin, Z. and Pavlakis, G. and Lockett, S.}
    10024 }
    10025 @article{Zhou2003,
    10026   year = {2003},
    10027   title = {Cytoplasmic Ployhedrosis Virus Structure at 8 by Electron Cryomicroscopy: Structural Basis of Capsid Stability and {mRNA} Processing Regulation},
    10028   pages = {651-663},
    10029   journal = {Structure},
    10030   volume = {1},
    10031   author = {Zhou, Z.H. and Zhang, H. and Jakana, J. and Lu, X.-Y. and Zhang, J.-Q.}
    10032 }
    10033 @article{Zhou2000,
    10034   year = {2000},
    10035   title = {Seeing the Herpesvirus Capsid at 8.5},
    10036   pages = {877-880},
    10037   journal = {Science},
    10038   volume = {288},
    10039   author = {Zhou, Z.H. and Dougherty, M. Jakana, J. and He, J. and Rixon, F.J. and Chiu, W.}
    10040 }
    10041 @article{Zhou2001,
    10042   number = {26},
    10043   year = {2001},
    10044   title = {The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes},
    10045   pages = {14802-14807},
    10046   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    10047   volume = {98},
    10048   author = {Zhou, Z.H. and McCarthy, D.B. and O'Conor, C.M. and Reed, L.J. and Stoops, J.K.}
    10049 }
    10050 @article{Medintz2004,
    10051   year = {2004},
    10052   title = {Reversible Modulation of Quantum Dot Photoluminescence Using a Protein- Bound Photochromic Fluorescence Resonance Energy Transfer Acceptor},
    10053   pages = {30-31},
    10054   journal = {Journal of the American Chemical Society},
    10055   volume = {126},
    10056   author = {Medintz, I.L. and Trammell, S.A. and Mattoussi, H. and Mauro, J.M.}
    10057 }
    10058 @article{Cherny2005,
    10059   number = {3},
    10060   year = {2005},
    10061   title = {Sequestering of p53 into {DNA}-protein filaments revealed by electron microscopy},
    10062   pages = {261-271},
    10063   journal = {Biophysical Chemistry},
    10064   volume = {114},
    10065   author = {Cherny, D.I. and Brzdov4, M. and Pale\v{c}ek, J. and Pale\v{c}ek, E. and Jovin, T.M.}
    10066 }
    10067 @article{Cherny2004,
    10068   number = {4},
    10069   year = {2004},
    10070   title = {Double-stranded {DNA} stimulates the fibrillation of $\alpha$-synuclein in vitro and is associated with the mature fibrils: An electron microscopy study},
    10071   pages = {929-938},
    10072   journal = {Journal of Molecular Biology},
    10073   volume = {344},
    10074   author = {Cherny, D.I. and Hoyer, W. and Subramaniam, V. and Jovin, T.M.}
    10075 }
    10076 @article{Cherny2001,
    10077   number = {2},
    10078   year = {2001},
    10079   title = {Electron and scanning force microscopy studies of alterations in supercoiled {DNA} tertiary structure},
    10080   pages = {295-307},
    10081   journal = {Journal of Molecular Biology},
    10082   volume = {313},
    10083   author = {Cherny, D.I. and Jovin, T.M.}
    10084 }
    10085 @article{Comer1999,
    10086   number = {3},
    10087   year = {1999},
    10088   title = {Morphological Operations for Color Image Processing},
    10089   pages = {279-189},
    10090   journal = {Journal of Electronic Imaging},
    10091   volume = {8},
    10092   author = {Comer, M. L. and Delp, E. J.}
    10093 }
    10094 @inproceedings{Farnebaeck2000,
    10095   month = {September},
    10096   year = {2000},
    10097   title = {Fast and {A}ccurate {M}otion {E}stimation using {O}rientation {T}ensors and {P}arametric {M}otion {M}odels},
    10098   booktitle = {Proceedings of 15th International Conference on Pattern Recognition},
    10099   pages = {135--139},
    10100   volume = {1},
    10101   address = {Barcelona, Spain},
    10102   annote = {Also as Technical Report LiTH-ISY-R-2254},
    10103   author = {G. {Farneb\"ack}},
    10104   organization = {IAPR}
    10105 }
    10106 @inproceedings{Farnebaeck2003,
    10107   series = {LNCS 2749},
    10108   month = {June 29 -July 2},
    10109   year = {2003},
    10110   title = {Two-Frame Motion Estimation Based on Polynomial Expansion},
    10111   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    10112   pages = {363-370},
    10113   editor = {{Big\"un}, J. and Gustavsson, T.},
    10114   address = {Berlin},
    10115   publisher = {Springer-Verlag},
    10116   author = {{Farneb\"ack}, G.}
    10117 }
    10118 @article{Freitag2005,
    10119   year = {2005},
    10120   title = {Breaking the spherical and chromatic aberration barrier in transmission electron microscopy},
    10121   pages = {209-214},
    10122   journal = {Ultramicroscopy},
    10123   volume = {102},
    10124   author = {Freitag, B. and Kujawa, S. and Mul, P.M. and Ringnalda, J. and Tiemeijer, P.C.}
    10125 }
    10126 @article{Lidke2005,
    10127   number = {9},
    10128   year = {2005},
    10129   title = {The role of photon statistics in fluorescence anisotropy imaging},
    10130   pages = {1237-1245},
    10131   journal = {IEEE Transactions on Image Processing},
    10132   volume = {14},
    10133   author = {Lidke, K.A. and Rieger, B. and Lidke, D.S. and Jovin, T.M.}
    10134 }
    10135 @article{Lidke2003,
    10136   number = {5},
    10137   year = {2003},
    10138   title = {Imaging molecular interactions in cells by dynamic and static fluorescence anisotropy ({rFLIM} and {emFRET})},
    10139   pages = {1020-1027},
    10140   journal = {Biochemical Society Transactions},
    10141   volume = {31},
    10142   author = {Lidke, D.S. and Nagy, P. and Barisas, B.G. and Heintzmann, R. and Post, J.N. and Lidke, K.A. and Clayton, A.H.A. and Arndt-Jovin, D.J. and Jovin, T.M.}
    10143 }
    10144 @article{Lidke2004,
    10145   number = {2},
    10146   year = {2004},
    10147   title = {Quantum dot ligands provide new insights into {erbB/HER} receptor-mediated signal transduction},
    10148   pages = {198-203},
    10149   journal = {Nature Biotechnology},
    10150   volume = {22},
    10151   author = {Lidke, D.S. and Nagy, P. and Heintzmann, R. and Arndt-Jovin, D.J. and Post, J.N. and Grecco, H. and Jares-Erijman, E.A. and Jovin, T.M.}
    10152 }
    10153 @article{Dubuc2001a,
    10154   number = {1--2},
    10155   year = {2001},
    10156   title = {Complexity, Confusion, and Perceptual Grouping. Part {II}: Mapping Complexity},
    10157   pages = {83--116},
    10158   journal = {Journal of Mathematical Imaging and Vision},
    10159   volume = {15},
    10160   author = {Dubuc, B. and Zucker, S.W.}
    10161 }
    10162 @article{Larkin2001a,
    10163   number = {8},
    10164   month = {August},
    10165   year = {2001},
    10166   title = {Natural Demodulation of Two-Dimensional Fringe Patterns. {II}. Stationary Phase Analysis of the Spiral Phase Quadrature Transform},
    10167   pages = {1871--1881},
    10168   journal = {Journal of the Optical Society of America A},
    10169   volume = {18},
    10170   author = {Larkin, K.G.}
    10171 }
    10172 @article{Salden1998,
    10173   year = {1998},
    10174   title = {Differential Integral Geometry of Linear Scale-Space},
    10175   pages = {5--27},
    10176   journal = {Journal of Mathematical Imaging and Vision},
    10177   volume = {9},
    10178   author = {Salden, A.H. and ter Haar Romeny, B.M. and Viergever, M.A. }
    10179 }
    10180 @misc{Lehar1994,
    10181   year = {1994},
    10182   title = {Harmonic Resonance in Visual Perception Suggests a Novel Form of Neural Communication},
    10183   note = {Rejected. Department of Cognitive and Neural Systems, Center for Adaptive Systems, Boston, U.S.A.},
    10184   author = {Lehar, S.}
    10185 }
    10186 @techreport{Luengo2003d,
    10187   month = {May},
    10188   year = {2003},
    10189   title = {Underestimation of the Radius in the Radon Transform for Circles and Spheres},
    10190   note = {Technical Report PH-2003-02},
    10191   institution = {Pattern Recognition Group, Delft University of Technology},
    10192   author = {Luengo Hendriks, C.L. and Ginkel, M. van and Vliet, L.J. van}
    10193 }
    10194 @inproceedings{Luengo2003c,
    10195   series = {Lecture Notes on Computer Science},
    10196   year = {2003},
    10197   title = {Discrete Morphology with Line Structuring Elements},
    10198   booktitle = {Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, {\footnotesize CAIP} 2003},
    10199   pages = {722-729},
    10200   editor = {Petkov, N. and Westenberg, M.A.},
    10201   volume = {2756},
    10202   address = {Berlin},
    10203   publisher = {Springer-Verlag},
    10204   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    10205 }
    10206 @article{Stark1996,
    10207   year = {1996},
    10208   title = {Electron radiation damage to protein crystals of bacteriorhodopsin at different temperatures},
    10209   pages = {75-70},
    10210   journal = {Ultramicroscopy},
    10211   volume = {63},
    10212   author = {Stark, H. and Zemlin, F. and Boettcher, C.}
    10213 }
    10214 @inproceedings{Luengo2003b,
    10215   series = {Lecture Notes on Computer Science},
    10216   year = {2003},
    10217   title = {The Generalized Radon Transform: Sampling and Memory Considerations},
    10218   booktitle = {Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, {\footnotesize CAIP} 2003},
    10219   pages = {681-688},
    10220   editor = {Petkov, N. and Westenberg, M.A.},
    10221   volume = {2756},
    10222   address = {Berlin},
    10223   publisher = {Springer-Verlag},
    10224   author = {Luengo Hendriks, C.L. and Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van}
    10225 }
    10226 @article{Cariolaro1998,
    10227   number = {12},
    10228   month = {December},
    10229   year = {1998},
    10230   title = {A Unified Framework for the Fractional {Fourier} Transform},
    10231   pages = {3206--3219},
    10232   journal = {IEEE Transactions on Signal Processing},
    10233   volume = {46},
    10234   author = {Cariolaro, G. and Erseghe, T. and Kraniauskas, P. and Laurenti, N.}
    10235 }
    10236 @article{Chen1977,
    10237   number = {9},
    10238   month = {September},
    10239   year = {1977},
    10240   title = {A Fast Computational Algorithm for the Discrete Cosine Transform},
    10241   pages = {1004--1009},
    10242   journal = {IEEE Transactions on Communications},
    10243   volume = {25},
    10244   annote = {key_fft},
    10245   author = {Chen, W.-H. and Harrison Smith, C. and Fralick, S.C.}
    10246 }
    10247 @article{Beckers1990,
    10248   year = {1990},
    10249   title = {The Probability of a Random Straight Line in Two and Three Dimensions},
    10250   pages = {233--240},
    10251   journal = {Pattern Recognition Letters},
    10252   volume = {11},
    10253   author = {Beckers, A.L.D. and Smeulders, A.W.M.}
    10254 }
    10255 @article{Aert2002a,
    10256   year = {2002},
    10257   title = {Optimal experimental design of {STEM} measurement of atom column positions},
    10258   pages = {273-289},
    10259   journal = {Ultramicroscopy},
    10260   volume = {90},
    10261   author = {Aert, S. van and Dekker, A.J. den and Dyck, D. van and Bos, A. van den}
    10262 }
    10263 @article{Mallat1989,
    10264   number = {7},
    10265   month = {July},
    10266   year = {1989},
    10267   title = {A Theory for Multiresolution Signal Decomposition: The Wavelet Representation},
    10268   pages = {674--693},
    10269   journal = {IEEE Transaction on Pattern Analysis and Machine Intelligence},
    10270   volume = {11},
    10271   author = {Mallat, S.G.}
    10272 }
    10273 @book{Ripley1988,
    10274   year = {1988},
    10275   title = {Statistical Inference for Spatial Processes},
    10276   publisher = {Cambridge University Press},
    10277   author = {Ripley, B.D.}
    10278 }
    10279 @book{Landau1959,
    10280   edition = {first},
    10281   year = {1959},
    10282   title = {Theory of Elasticity},
    10283   publisher = {Pergamon Press},
    10284   author = {Landau, L.D. and Lifshitz, E.M.}
    10285 }
    10286 @article{Oudejans2000,
    10287   year = {2000},
    10288   title = {Errors in judging 'offside' in football},
    10289   pages = {33},
    10290   journal = {Nature},
    10291   volume = {404},
    10292   author = {Oudejans, R.R.D. and Verheijen, R. and Bakker, F.C. and Gerrits, J.C. and Steinbrcker, M. and Beek, P.J.}
    10293 }
    10294 @article{Kubinova2001,
    10295   number = {6},
    10296   year = {2001},
    10297   title = {Confocal Microscopy and Stereology: Estimating Volume, Number, Surface Area and Length by Virtual Test Probes Applied to Three-Dimensional Images},
    10298   pages = {425--435},
    10299   journal = {Microscopy Research and Technique},
    10300   volume = {53},
    10301   author = {Kubinova, L. and Janacek, J.}
    10302 }
    10303 @article{Duynhoven2003,
    10304   number = {4},
    10305   year = {2003},
    10306   title = {Quantitative Assessment of Gas Cell Development during the Proofing of Dough by Magnetic Resonance Imaging and Image Analysis},
    10307   pages = {360-369},
    10308   journal = {Cereal Chemistry},
    10309   volume = {80},
    10310   author = {Duynhoven, P.M. van and Kempen, G.M.P. van and Sluis, R. van and Rieger, B. and Weegels, P. and Vliet, L.J. van and Nicolay, K.}
    10311 }
    10312 @misc{DMD,
    10313   title = {www.dlp.com},
    10314   author = {Texas Instruments Technology}
    10315 }
    10316 @article{Merlin1975,
    10317   month = {January},
    10318   year = {1975},
    10319   title = {A Parallel Mechanism for Detecting Curves in Pictures},
    10320   pages = {96--98},
    10321   journal = {IEEE Transactions on Computers},
    10322   volume = {24},
    10323   author = {Merlin, P.M. and Farber, D.J.}
    10324 }
    10325 @inproceedings{Meyer1999,
    10326   series = {Lecture Notes on Computer Science},
    10327   month = {September},
    10328   year = {1999},
    10329   title = {Multiscale Morphological Segmentations Based on Watershed, Flooding, and Eikonal PDE},
    10330   booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)},
    10331   pages = {351--362},
    10332   editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
    10333   volume = {1682},
    10334   address = {Berlin Heidelberg},
    10335   publisher = {Springer-Verlag},
    10336   author = {Meyer, Fernand and Maragos, Petros}
    10337 }
    10338 @article{Borgefors2003,
    10339   number = {1},
    10340   year = {2003},
    10341   title = {Weighted Digital Distance Transforms in Four Dimensions},
    10342   pages = {161--176},
    10343   journal = {Discrete Applied Mathematics},
    10344   volume = {125},
    10345   author = {Borgefors, G.}
    10346 }
    10347 @incollection{Proesmans1994,
    10348   year = {1994},
    10349   title = {Coupled geometry-driven diffusion equations for low-level vision},
    10350   booktitle = {Geometry-driven diffusion in computer vision},
    10351   pages = {191--228},
    10352   editor = {Ter Haar Romeny B.M.},
    10353   chapter = {9},
    10354   publisher = {Kluwer Academic Publishers},
    10355   author = {Proesmans, M. and Pauwels, P. and van Gool, L.}
    10356 }
    10357 @article{Smith1997,
    10358   number = {1},
    10359   year = {1997},
    10360   title = {SUSAN - A New Approach to Low Level Image Processing},
    10361   pages = {45--78},
    10362   journal = {International Journal of Computer Vision},
    10363   volume = {23},
    10364   author = {Smith, S.M., Brady J.M.}
    10365 }
    10366 @article{Catte1992,
    10367   number = {1},
    10368   month = {February},
    10369   year = {1992},
    10370   title = {Image selective smoothing and edge detection by nonlinear diffusion},
    10371   pages = {182--193},
    10372   journal = {SIAM J. Numer. Anal.},
    10373   volume = {29},
    10374   author = {{Catt\'e}, F. and Lions, P. and Morel, J. and Coll, T.}
    10375 }
    10376 @article{Radon1917,
    10377   year = {1917},
    10378   title = {{\"Uber} die {B}estimmung von {F}unktionen durch ihre {I}ntegralwerte {l\"angs} gewisser {M}annigfaltigkeiten},
    10379   pages = {262--277},
    10380   journal = {Berichte {S\"achsische} Akademie der Wissenschaften, Leipzig, Mathematisch-Physikalische Klasse},
    10381   volume = {69},
    10382   author = {Radon, J.}
    10383 }
    10384 @techreport{MuntheKaas1995,
    10385   year = {1995},
    10386   title = {Coordinate Free Numerics. Part 1: How to Avoid Index Wrestling in Tensor Computations},
    10387   institution = {Department of Informatics, University of Bergen, Norway},
    10388   author = {Munthe-Kaas, H. and Haveraaen, M.}
    10389 }
    10390 @inproceedings{Ginkel1999kort,
    10391   year = {1999},
    10392   title = {Curvature Estimation from Orientation Fields },
    10393   booktitle = {SCIA'99 },
    10394   pages = {545--551 },
    10395   editor = {Ersboll, B.K. and Johansen, P. },
    10396   publisher = {Pattern Recognition Society of Denmark},
    10397   author = {Ginkel, M. van and Weijer, J. van de and Verbeek, P.W. and Vliet, L.J. van }
    10398 }
    10399 @article{Squire1999,
    10400   year = {1999},
    10401   title = {Three Dimensional Image Restoration in Fluorescence Lifetime Imaging Microscopy},
    10402   pages = {36--49},
    10403   journal = {Journal of Microscopy},
    10404   volume = {193},
    10405   author = {Squire, A. and Bastiaens, P.I.H.}
    10406 }
    10407 @article{Larkin2005,
    10408   number = {20},
    10409   year = {2005},
    10410   title = {Uniform estimation of orientation using local and nonlocal {2-D} energy operators},
    10411   pages = {8097-8121},
    10412   journal = {Optics Express},
    10413   volume = {13},
    10414   author = {Larkin, K.G.}
    10415 }
    10416 @article{Babaud1986,
    10417   number = {1},
    10418   month = {January},
    10419   year = {1986},
    10420   title = {Uniqueness of the {G}aussian Kernel for Scale-Space Filtering},
    10421   pages = {26--33},
    10422   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
    10423   volume = {8},
    10424   author = {Babaud, J. and Witkin, A.P. and Baudin, M. and Duda, R.O.}
    10425 }
    10426 @article{Grossman1984,
    10427   number = {4},
    10428   month = {July},
    10429   year = {1984},
    10430   title = {Decomposition of {Hardy} Functions into Square Integrable Wavelets of Constant Shape},
    10431   pages = {723--736},
    10432   journal = {{SIAM} Journal on Mathematical Analysis},
    10433   volume = {15},
    10434   author = {Grossman, A. and Morlet, J.}
    10435 }
    10436 @article{OlivoMarin2002,
    10437   number = {9},
    10438   month = {September},
    10439   year = {2002},
    10440   title = {Extraction of Spots in Biological Images using Multiscale Products},
    10441   pages = {1989--1996},
    10442   journal = {Pattern Recognition},
    10443   volume = {35},
    10444   author = {Olivo-Marin, J.-C.}
    10445 }
    10446 @article{Larkin2001,
    10447   number = {8},
    10448   month = {August},
    10449   year = {2001},
    10450   title = {Natural Demodulation of Two-Dimensional Fringe Patterns. {I}. General Background of the Spiral Phase Quadrature Transform},
    10451   pages = {1862--1870},
    10452   journal = {Journal of the Optical Society of America A},
    10453   volume = {18},
    10454   author = {Larkin, K.G. and Bone, D.J. and Oldfield, M.A.}
    10455 }
    10456 @article{Nakajima2003,
    10457   year = {2003},
    10458   title = {Physics-based flow estimation of fluids},
    10459   pages = {1203-1212},
    10460   journal = {Pattern Recognition},
    10461   volume = {36},
    10462   author = {Nakajima, Y. and Inomata, H. and Nogawa, H. and Sato, Y. and Tamura, S. and Okazaki, K. and Torii, S.}
    10463 }
    10464 @article{Garini2005,
    10465   number = {1},
    10466   year = {2005},
    10467   title = {From micro to nano: recent advances in high-resolution microscopy},
    10468   pages = {3-12},
    10469   journal = {Current Opinion in Biotechnology},
    10470   volume = {16},
    10471   author = {Garini, Y. and Vermolen, B.J. and Young, I.T.}
    10472 }
    10473 @article{Duhamel1990,
    10474   year = {1990},
    10475   title = {Fast {F}ourier transforms: a tutorial review and a state of the art},
    10476   pages = {259--299},
    10477   journal = {Signal Processing},
    10478   volume = {19},
    10479   annote = {key_fft},
    10480   author = {Duhamel. P. and Vetterli, M.}
    10481 }
    10482 @article{Martinez2004,
    10483   year = {2004},
    10484   title = {Design of {Wien} filters with high resolution},
    10485   pages = {105-114},
    10486   journal = {Ultramicroscopy},
    10487   volume = {100},
    10488   author = {Martinez, G. and Tsuno, K.}
    10489 }
    10490 @inproceedings{Tanaka1986,
    10491   year = {1986},
    10492   title = {A Rotation Method for Raster Image Using Skew Transformation},
    10493   booktitle = {CVPR'86, IEEE Conference on Computer Vision and Pattern Recognition},
    10494   pages = {272--277},
    10495   author = {Tanaka, A. and Kameyama, M. and Kazama, S. and Watanabe, O.}
    10496 }
    10497 @article{Nyquist1928,
    10498   year = {1928},
    10499   title = {Certain Topics in Telegraph Transmission Theory},
    10500   pages = {617--644},
    10501   note = {[reprinted in: Proceedings of the IEEE, vol. 90, no. 2, pp. 280-305, February 2002]},
    10502   journal = {Transactions of the AIEE},
    10503   author = {Nyquist, H.}
    10504 }
    10505 @article{Thurnhofer1996,
    10506   number = {6},
    10507   month = {June},
    10508   year = {1996},
    10509   title = {A General Framework for Quadratic {V}olterra Filter for Edge Enhancement},
    10510   pages = {950--963},
    10511   journal = {IEEE Transactions on Image Processing},
    10512   volume = {5},
    10513   author = {Thurnhofer, S. and Mitra, S.K.}
    10514 }
    10515 @article{Kybic2002,
    10516   number = {8},
    10517   year = {2002},
    10518   title = {Generalized sampling: A variational approach - Part I: Theory},
    10519   pages = {1965--1976},
    10520   journal = {IEEE Transactions on Signal Processing},
    10521   volume = {50},
    10522   author = {Kybic, J. and Blu, T. and Unser, M.}
    10523 }
    10524 @article{Maybank1986,
    10525   year = {1986},
    10526   title = {Optical Flow and the Taylor Expansion},
    10527   pages = {243-246},
    10528   journal = {Pattern Recognition Letters},
    10529   volume = {4},
    10530   author = {Maybank, S.J.}
    10531 }
    10532 @inproceedings{Breen1996,
    10533   year = {1996},
    10534   title = {An Attribute-Based Approach to Mathematical Morphology},
    10535   booktitle = {Mathematical Morphology and its Applications to Image and Signal Processing},
    10536   pages = {41-48},
    10537   editor = {Maragos, P. and Schafer, R. W. and Akmal Butt, M.},
    10538   address = {Boston},
    10539   publisher = {Kluwer Academic Publishers},
    10540   author = {Breen, E. J. and Jones, R.}
    10541 }
    10542 @inproceedings{Ronse1986,
    10543   year = {1986},
    10544   title = {Erosion of Narrow Image Features by Combination of Local Low Rank and Max Filters},
    10545   booktitle = {Proceedings of the Second IEE International Conference on Image Processing and its Applications},
    10546   pages = {77-81},
    10547   address = {London},
    10548   author = {Ronse, C.}
    10549 }
    10550 @article{Khaneja1998,
    10551   number = {11},
    10552   year = {1998},
    10553   title = {Dynamic Programming Generation of Curves on Brain Surfaces},
    10554   pages = {1260--1265},
    10555   journal = {IEEE Transaction on Pattern Analysis and Machine Intelligence},
    10556   volume = {20},
    10557   author = {Khaneja, N. and Miller, M. I. and Grenander, U.}
    10558 }
    10559 @article{Nogales2001,
    10560   year = {2--1},
    10561   title = {Molecular Machines: Putting the Pieces Together},
    10562   pages = {F1-F10},
    10563   journal = {Journal of Cell Biology},
    10564   volume = {152},
    10565   author = {Nogales, E. and Grigorieff, N.}
    10566 }
    10567 @article{Campbell2001,
    10568   number = {6},
    10569   year = {2001},
    10570   title = {Spontaneous Assembly of Magnetic {LEGO} Bricks},
    10571   pages = {321--323},
    10572   journal = {The Chemical Educator},
    10573   volume = {6},
    10574   author = {Campbell, D.J. and Freidinger, E.R. and Querns, M.K.}
    10575 }
    10576 @article{Pike1995,
    10577   number = {3},
    10578   year = {1995},
    10579   title = {Plan 9 from {Bell} Labs},
    10580   pages = {221--254},
    10581   journal = {Computing Systems},
    10582   volume = {8},
    10583   author = {Pike, R. and Presotto, D. and Dorward, S. and Flandrena, B. and Thompson, K. and Trickey, H. and Winterbottom, P.}
    10584 }
    10585 @article{Jiang2003,
    10586   year = {2003},
    10587   title = {Applications of a bilateral denoising filter in biological electron microscopy},
    10588   pages = {114-122},
    10589   journal = {Journal of Structural Biology},
    10590   volume = {144},
    10591   author = {Jiang, W. and Baker, M.L. and Wu, Q. and Bajaj, C. and Chiu, W.}
    10592 }
    10593 @misc{Koenderink1988,
    10594   year = {1988},
    10595   title = {Image Structure},
    10596   howpublished = {NATO ASI Series, vol. F39, Mathematics and Computer Science in Medical Imaging, Springer-Verlag},
    10597   author = {Koenderink, J.J.}
    10598 }
    10599 @article{Back1997,
    10600   number = {4},
    10601   month = {Aug},
    10602   year = {1997},
    10603   title = {A first application of independent component analysis to extracting structure from stock returns},
    10604   pages = {473-484},
    10605   journal = {International Journal of Neural Systems},
    10606   volume = {8},
    10607   author = {Back, A. D. and Weigend, A. S.}
    10608 }
    10609 @article{Koenderink1984,
    10610   year = {1984},
    10611   title = {The Structure of Images},
    10612   pages = {363--370},
    10613   journal = {Biological Cybernetics},
    10614   volume = {50},
    10615   author = {Koenderink, J.J.}
    10616 }
    10617 @article{Koenderink1987,
    10618   year = {1987},
    10619   title = {Representation of Local Geometry in the Visual System},
    10620   pages = {367--375},
    10621   journal = {Biological Cybernetics},
    10622   volume = {55},
    10623   author = {Koenderink, J.J. and Doorn, A.J. van}
    10624 }
    10625 @article{Jarvis1976,
    10626   month = {August},
    10627   year = {1976},
    10628   title = {A New Technique for Displaying Continuous Tone Images on a Bilevel Display},
    10629   pages = {891--898},
    10630   journal = {IEEE Transactions on Communications},
    10631   author = {Jarvis, J.F. and Roberts, C.S.}
    10632 }
    10633 @article{Saito1994,
    10634   number = {11},
    10635   year = {1994},
    10636   title = {New algorithms for euclidean distance transformation of an n-dimensional digitized picture with applications},
    10637   pages = {1551-1565},
    10638   journal = {Pattern Recognition},
    10639   volume = {27},
    10640   author = {Saito,T. and Toriwaki, J.}
    10641 }
    10642 @article{Bonneau2005,
    10643   number = {9},
    10644   year = {2005},
    10645   title = {Single Quantum Dot Tracking Based on Perceptual Grouping Using Minimal Paths in a Spatiotemporal Volume},
    10646   pages = {1384-1395},
    10647   journal = {IEEE Transactions on Image Processing},
    10648   volume = {14},
    10649   author = {Bonneau, S. and Dahan, M. and Cohnen, L.D.}
    10650 }
    10651 @inproceedings{Boomgaard2002a,
    10652   month = {1 June},
    10653   year = {2002},
    10654   title = {Robust Estimation of Orientation for Texture Analysis},
    10655   booktitle = {Texture 2002, The 2nd international workshop on texture analysis and synthesis},
    10656   pages = {135-138},
    10657   address = {Copenhagen, Denmark},
    10658   author = {Boomgaard, R. van den and Weijer, J. van de}
    10659 }
    10660 @article{Koenderink1988a,
    10661   number = {7},
    10662   month = {July},
    10663   year = {1988},
    10664   title = {Two-dimensional Curvature Operators},
    10665   pages = {1136--1141},
    10666   journal = {Journal of the Optical Society of America A},
    10667   volume = {5},
    10668   author = {Koenderink, J.J. and Richards, W.}
    10669 }
    10670 @article{Neher2004,
    10671   year = {2004},
    10672   title = {Applying Spectral Fingerprinting to the Analysis of {FRET} Images},
    10673   pages = {185-195},
    10674   journal = {Microscopy Research and Technique},
    10675   volume = {64},
    10676   author = {Neher, R.A. and Neher, E.}
    10677 }
    10678 @article{Wouters2001,
    10679   year = {2001},
    10680   title = {Imaging biochemistry inside cells},
    10681   pages = {203-211},
    10682   journal = {Trends in Cell Biology},
    10683   volume = {11},
    10684   author = {Wouters, F.S. and Verveer, P.J. and Bastiaens, P.I.H.}
    10685 }
    10686 @article{Einstein1905,
    10687   year = {1905},
    10688   title = {{\"Uber} die von der molekularkinetischen {T}heorie der {W\"a}rme geforderte {B}ewegung von in ruhenden {Fl\"u}ssigkeiten suspendierten {T}eilchen},
    10689   pages = {549--560},
    10690   journal = {Annalen der Physik},
    10691   volume = {17},
    10692   author = {Einstein, A.}
    10693 }
    10694 @article{Wimberly2000,
    10695   year = {2005},
    10696   title = {Structure of the {30S} ribosomal subunit},
    10697   pages = {327-339},
    10698   journal = {Nature},
    10699   volume = {407},
    10700   author = {Wimberly, B.T. and Brodersen, D.E. and Clemons, W.M. Jr. and Morgan-Warren, R.J. and Carter, A.P. and Vonrhein, C. and Hartsch, T. and Ramakrishnan, V.}
    10701 }
    10702 @article{Weickert1998,
    10703   number = {3},
    10704   year = {1998},
    10705   title = {Efficient and reliable schemes for nonlinear diffusion filtering},
    10706   pages = {398--410},
    10707   journal = {IEEE Transactions on Image Processing},
    10708   volume = {7},
    10709   author = {Weickert, J. and ter Haar Romeny, B.M. and Viergever, M.A. }
    10710 }
    10711 @article{Lindeberg1990,
    10712   number = {3},
    10713   year = {1990},
    10714   title = {Scale-Space for Discrete Signals},
    10715   pages = {234--254},
    10716   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    10717   volume = {12},
    10718   author = {Lindeberg, T.}
    10719 }
    10720 @article{Nason2000,
    10721   year = {2000},
    10722   title = {Wavelet Processes and Adaptive Estimation of the Evolutionary Wavelet Spectrum},
    10723   pages = {271--292},
    10724   journal = {Journal of the Royal Statistical Society B},
    10725   volume = {62},
    10726   author = {Nason, G.P. and Sachs, R. von and Kroisandt, G.}
    10727 }
    10728 @article{Gibbons1975,
    10729   number = {11},
    10730   year = {1975},
    10731   title = {Inelastic electron scattering spectrometer},
    10732   pages = {1546-1554},
    10733   journal = {Review of Scientific Intstruments},
    10734   volume = {46},
    10735   author = {Gibbons, P.C. and Ritsko, J.J. and Schnatterly, S.E.}
    10736 }
    10737 @article{Bouma2005,
    10738   number = {9},
    10739   year = {2005},
    10740   title = {Correction for the Dislocation of Curved Surfaces Caused by the {PSF} in {2D} and {3D} {CT} Images},
    10741   pages = {1501-1507},
    10742   journal = {Ultramicroscopy},
    10743   volume = {27},
    10744   author = {Bouma, H. and Vilanova, A. and Vliet, L.J. van and Gerritsen, F.A.}
    10745 }
    10746 @book{Lindeberg1994,
    10747   year = {1994},
    10748   title = {Scale-Space Theory in Computer Vision},
    10749   publisher = {Kluwer},
    10750   author = {Lindeberg, T.}
    10751 }
    10752 @article{Ober2003,
    10753   number = {10},
    10754   year = {2003},
    10755   title = {Calculations of the Fisher information matrix for multidimensional data sets},
    10756   pages = {2679-2691},
    10757   journal = {IEEE Transactions on Signal Processing},
    10758   volume = {51},
    10759   author = {Ober, R.J. and Lin, Z. and Zou, Q.}
    10760 }
    10761 @article{Mattfeldt2000,
    10762   month = {May},
    10763   year = {2000},
    10764   title = {Classification of Spatial Textures in Benign and Cancerous Glandular Tissues by Stereology and Stochastic Geometry using Artificial Neural Networks},
    10765   pages = {143--158},
    10766   journal = {Journal of Microscopy},
    10767   volume = {198, Pt 2},
    10768   author = {Mattfeldt, T. and Gottfried, H.-W. and Schmidt, V. and Kestler, H.A.}
    10769 }
    10770 @article{Ober2004,
    10771   number = {2},
    10772   year = {2004},
    10773   title = {Localization Accuracy in Single-Molecule Microscopy},
    10774   pages = {1185-1200},
    10775   journal = {Biophysical Journal},
    10776   volume = {86},
    10777   author = {Ober, R.J. and Ram, S. and Ward, S.E.}
    10778 }
    10779 @article{Hummel1987,
    10780   year = {1987},
    10781   title = {Deblurring Gaussian Blur},
    10782   pages = {66--80},
    10783   journal = {Computer Vision, Graphics, and Image Processing},
    10784   volume = {38},
    10785   author = {Hummel, R.A. and Kimia, B. and Zucker, S.W.}
    10786 }
    10787 @article{Hummel1989,
    10788   number = {12},
    10789   month = {December},
    10790   year = {1989},
    10791   title = {Reconstructions from Zero Crossings in Scale Space},
    10792   pages = {2111--2130},
    10793   journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
    10794   volume = {37},
    10795   author = {Hummel, R. and Moniot, R.}
    10796 }
    10797 @article{Pons1999,
    10798   year = {1999},
    10799   title = {Particle morphology: from cisulatisation to measurement},
    10800   pages = {44--57},
    10801   journal = {Powder Technology},
    10802   volume = {103},
    10803   author = {Pons, M.N. and Vivier, H. and Belaroui, K. and Bernard-Michel, B. and Cordier, F. and Oulahana, D. and Dodds, J.A. }
    10804 }
    10805 @inproceedings{Holmes1999,
    10806   year = {1999},
    10807   title = {Developing a Measure of Similarity between Pixel Signatures},
    10808   booktitle = {10th British Machine Vision Conference},
    10809   pages = {614--623},
    10810   editor = {Pridmore, T. and Elliman, D.},
    10811   volume = {2},
    10812   author = {Holmes, A. and Taylor, C.}
    10813 }
    10814 @article{Keys1981,
    10815   number = {6},
    10816   year = {1981},
    10817   title = {Cubic Convolution Interpolation for Digital Image Processing},
    10818   pages = {1153-1160},
    10819   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    10820   volume = {29},
    10821   author = {Keys, R. G.}
    10822 }
    10823 @inproceedings{Hummel1986,
    10824   year = {1986},
    10825   title = {Representation Based on Zero-crossings in Scale-Space},
    10826   booktitle = {IEEE Proceedings of the International Conference on Computer Vision and Pattern Recognition},
    10827   pages = {204--209},
    10828   author = {Hummel, R.A.}
    10829 }
    10830 @article{Nielsen1997,
    10831   number = {4},
    10832   year = {1997},
    10833   title = {Regularization, scale-space and edge-detection filters},
    10834   pages = {291--307},
    10835   journal = {Journal of Mathematical Imaging and Vision},
    10836   volume = {7},
    10837   author = {Nielsen, N. and Florack, L. and Deriche, R.}
    10838 }
    10839 @inbook{Adam1968,
    10840   year = {1968},
    10841   title = {Structural Chemistry and Molecular Biology},
    10842   pages = {198-215},
    10843   editor = {Rich, A. and Davidson, N. },
    10844   address = {San Francisco, USA},
    10845   chapter = {Reduction of Dimensionality in Biological Diffusion Processes},
    10846   publisher = {Freeman},
    10847   author = {Adam, G. and {Delbr\"uck}, M.}
    10848 }
    10849 @article{Frontali1979,
    10850   number = {6},
    10851   year = {1979},
    10852   title = {An absolute method for the determination of the persistence length of native {DNA} from electron micrographs},
    10853   pages = {1353-1373},
    10854   journal = {Biopolymers},
    10855   volume = {18},
    10856   author = {Frontali, C. and Dore, E. and Ferrauto, A. and Gratton, E. and Bettini, A. and Pozzan, M.R. and Valdevit, E.}
    10857 }
    10858 @inbook{Thomas1963,
    10859   year = {1963},
    10860   title = {Applications of Digital Computers},
    10861   chapter = {Using Computers to Solve Problems in Physics},
    10862   publisher = {Ginn and Co., Boston},
    10863   author = {Thomas, L.H.}
    10864 }
    10865 @article{Yang2005,
    10866   year = {2005},
    10867   title = {Unified {3-D} structure and projection orientation refinement using {quasi-Newton} algorithm},
    10868   pages = {53-64},
    10869   journal = {Journal of Structural Biology},
    10870   volume = {149},
    10871   author = {Yang, C. and Ng, E.G. and Penczek, P.A.}
    10872 }
    10873 @article{Almeida1997,
    10874   year = {1997},
    10875   title = {Anisotropic Textures with Arbitrary Orientation},
    10876   pages = {241--251},
    10877   journal = {Journal of Mathematical Imaging and Vision},
    10878   volume = {7},
    10879   author = {Almeida, M.P.}
    10880 }
    10881 @mastersthesis{Okker2003,
    10882   month = {January},
    10883   year = {2003},
    10884   title = {Contour continuation using space variant mathematical morphology},
    10885   school = {Delft University of Technology},
    10886   author = {Okker, B.H.}
    10887 }
    10888 @article{Kempen2000a,
    10889   number = {4},
    10890   year = {2000},
    10891   title = {Mean and Variance of Ratio Estimators Used in Fluorescence Ratio Imaging},
    10892   pages = {300-305},
    10893   journal = {Cytometry},
    10894   volume = {39},
    10895   author = {Kempen, G.M.P. van and Vliet, L.J. van}
    10896 }
    10897 @article{Almeida1994,
    10898   number = {11},
    10899   month = {November},
    10900   year = {1994},
    10901   title = {The Fractional {F}ourier Transform and Time-Frequency Representations},
    10902   pages = {3084--3091},
    10903   journal = {IEEE Transactions on Signal Processing},
    10904   volume = {42},
    10905   author = {Almeida, L.B.}
    10906 }
    10907 @article{Malandain1998,
    10908   number = {5},
    10909   year = {1998},
    10910   title = {Euclidean Skeletons},
    10911   pages = {317--327},
    10912   journal = {Image and Vision Computing},
    10913   volume = {16},
    10914   author = {Malandain, G. and {Fern\'andez-Vidal}, S.}
    10915 }
    10916 @article{Hekrdla1986,
    10917   number = {4},
    10918   month = {August},
    10919   year = {1986},
    10920   title = {Index Transforms of Multidimensional Cyclic Convolutions and Discrete {Fourier} Transforms},
    10921   pages = {996--996},
    10922   journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
    10923   volume = {34},
    10924   annote = {key_fft},
    10925   author = {Hekrdla, J.}
    10926 }
    10927 @article{Kues2001,
    10928   number = {6},
    10929   year = {2001},
    10930   title = {Visualization and Tracking of Single Protein Molecules in the Cell Nucleus},
    10931   pages = {2954-2967},
    10932   journal = {Biophysical Journal},
    10933   volume = {80},
    10934   author = {Kues, T. and Peters, R. and Kubitscheck, U.}
    10935 }
    10936 @article{Heilemann2002,
    10937   number = {14},
    10938   year = {2002},
    10939   title = {High-resolution colocalization of single dye molecules by fluorescence lifetime imaging microscopy},
    10940   pages = {3511-3517},
    10941   journal = {Analytical Chemistry},
    10942   volume = {74},
    10943   author = {Heilemann, M. and Herten, D.P. and Heintzmann, R. and Cremer, C. and {M\"uller}, C. and Tinnefeld, P. and Weston, K.D. and Wolfrum, J. and Sauer, M.}
    10944 }
    10945 @article{Kehtarnavaz1988,
    10946   number = {5},
    10947   month = {September},
    10948   year = {1988},
    10949   title = {A 3-D contour segmentation scheme based on curvature and torsion},
    10950   pages = {707--713},
    10951   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    10952   volume = {10},
    10953   author = {Kehtarnavaz, N. and Figueiredo, R.J.P. de}
    10954 }
    10955 @article{Gil1993,
    10956   number = {5},
    10957   month = {May},
    10958   year = {1993},
    10959   title = {Computing {2-D} Min, Median, and Max Filters},
    10960   pages = {504--507},
    10961   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    10962   volume = {15},
    10963   author = {Gil, J. and Werman, M.}
    10964 }
    10965 @article{Engel1981,
    10966   number = {1},
    10967   year = {1981},
    10968   title = {Shapes, domain organizations and flexibility of laminin and fibronectin, two multifunctional proteins of the extracellular matrix},
    10969   pages = {97-120},
    10970   journal = {Journal of Molecular Biology},
    10971   volume = {150},
    10972   author = {Engel, J. and Odermatt, E. and Engel, A. and Madri, J.A. and Furthmayr, H. and Timpl, H.R.}
    10973 }
    10974 @article{Ruiz2001,
    10975   year = {2001},
    10976   title = {The first three-dimensional structure of phosphofructokinase from Saccharomyces cerevisiae determined by electron microscopy of single particles},
    10977   pages = {167-180},
    10978   journal = {Journal of Structural Biology},
    10979   volume = {136},
    10980   author = {Ruiz, T. and {Koppenschl\"ager}, G. and Radermacher, M.}
    10981 }
    10982 @techreport{Nordberg1992a,
    10983   year = {1992},
    10984   title = {Signal Representation and Signal Processing using Operators},
    10985   note = {LiTH-ISY-I-1387},
    10986   address = {{Link\"oping}, Sweden},
    10987   institution = {{Link\"oping} University},
    10988   author = {Nordberg, K.}
    10989 }
    10990 @article{Faydi2001,
    10991   year = {2001},
    10992   title = {Experimental Study and Modeling of the Ice Crystal Morphology of Model Standard Ice Cream. Part {I}: Direct Characterization Method and Experimental Data},
    10993   pages = {283--291},
    10994   journal = {Journal of Food Engineering},
    10995   volume = {48},
    10996   author = {Faydi, E. and Andrieu, J. and Laurent, P.}
    10997 }
    10998 @article{Griffin1997,
    10999   number = {5},
    11000   year = {1997},
    11001   title = {Scale-Imprecision Space},
    11002   pages = {369--398},
    11003   journal = {Image and Vision Computing},
    11004   volume = {15},
    11005   author = {Griffin, L.D.}
    11006 }
    11007 @phdthesis{Cavallo2002,
    11008   month = {June},
    11009   year = {2002},
    11010   title = {Four Dimensional Particle Tracking in Biological Dynamic Processes},
    11011   address = {Heidelberg, Germany},
    11012   school = {Ruprechts-Karls-{Universit\"at}},
    11013   author = {Cavallo, A.}
    11014 }
    11015 @phdthesis{Leeuw1997,
    11016   year = {1997},
    11017   title = {Presentation and Exploration of Flow Data},
    11018   address = {The Netherlands},
    11019   school = {Delft University of Technology},
    11020   author = {Leeuw, W. de}
    11021 }
    11022 @article{Unser1993a,
    11023   number = {2},
    11024   month = {February},
    11025   year = {1993},
    11026   title = {{B}-Spline Signal Processing: Part {II} - Efficient Design and Applications},
    11027   pages = {834--848},
    11028   journal = {IEEE Transactions on Signal Processing},
    11029   volume = {41},
    11030   author = {Unser, Michael and Aldroubi, Akram and Eden, Murray}
    11031 }
    11032 @article{Deschamps2001,
    11033   number = {4},
    11034   year = {2001},
    11035   title = {Fast extraction of minimal paths in 3D images and applications to virtual endoscopy},
    11036   pages = {281-299},
    11037   journal = {Medical Image Analysis},
    11038   volume = {5},
    11039   author = {Deschamps, T. and Cohen, L.D.}
    11040 }
    11041 @article{Torok1998,
    11042   number = {4-6},
    11043   year = {1998},
    11044   title = {On the general properties of polarised light conventional and confocal microscopes},
    11045   pages = {300-315},
    11046   journal = {Optics Communications},
    11047   volume = {148},
    11048   author = {{T\"or\"ok}, P. and Higdon, P.D. and Wilson, T.}
    11049 }
    11050 @article{Rose2004,
    11051   year = {2004},
    11052   title = {Outline of an ultracorrector compensating for all primary chromatic and geometrical aberrations of charged-particle lenses},
    11053   pages = {12-27},
    11054   journal = {Nuclear Instruments and Methods in Physics Research A},
    11055   volume = {519},
    11056   author = {Rose, H.}
    11057 }
    11058 @article{Jain1979,
    11059   number = {4},
    11060   month = {October},
    11061   year = {1979},
    11062   title = {A Sinusoidal Family of Unitary Transforms},
    11063   pages = {356--365},
    11064   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11065   volume = {1},
    11066   annote = {key_fft},
    11067   author = {Jain, A.K.}
    11068 }
    11069 @article{Weickert1999a,
    11070   number = {3},
    11071   year = {1999},
    11072   title = {Linear scale-space has first been proposed in {Japan}},
    11073   pages = {237--252},
    11074   journal = {Journal of Mathematical Imaging and Vision},
    11075   volume = {10},
    11076   author = {Weickert, J. and Ishikawa, S. and Imiya, A.}
    11077 }
    11078 @article{Doel1998,
    11079   number = {3},
    11080   year = {1998},
    11081   title = {Quantitative evaluation of light microscopes based on image processing techniques},
    11082   pages = {138-149},
    11083   journal = {Bioimaging},
    11084   volume = {6},
    11085   author = {Doel, L.R. van den and Vliet, L.J. van}
    11086 }
    11087 @article{Mallat1992,
    11088   number = {7},
    11089   month = {June},
    11090   year = {1992},
    11091   title = {Characterization of Signals from Multiscale Edges},
    11092   pages = {710--732},
    11093   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11094   volume = {14},
    11095   author = {Mallat, S.G. and Zhong, S.}
    11096 }
    11097 @inproceedings{Bulow1997,
    11098   month = {June 9-11},
    11099   year = {1997},
    11100   title = {Algebraically Extended Representations of Multi-Dimensional Signals},
    11101   booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)},
    11102   pages = {559--566},
    11103   volume = {I},
    11104   author = {{B\"ulow}, T. and Sommer, G.}
    11105 }
    11106 @article{Bailey1990,
    11107   year = {1990},
    11108   title = {{FFT}s in External or Hierarchical Memory},
    11109   pages = {23--35},
    11110   journal = {The Journal of Supercomputing},
    11111   volume = {4},
    11112   annote = {key_fft},
    11113   author = {Bailey, D.H.}
    11114 }
    11115 @article{Boddeke1997,
    11116   number = {3},
    11117   year = {1997},
    11118   title = {Calibration of the automated z-axis of a microscope using focus functions},
    11119   pages = {270-274},
    11120   journal = {Journal of Microscopy},
    11121   volume = {186},
    11122   author = {Boddeke, F.R. and Vliet, L.J. van and Young, I.T.}
    11123 }
    11124 @inproceedings{Bulow1998,
    11125   month = {August 17--20},
    11126   title = {Quaternionic {G}abor Filters for Local Structure Classification},
    11127   booktitle = {14th International Conference on Pattern Recognition (Brisbane, Australia)},
    11128   pages = {808--810},
    11129   author = {{B\"ulow}, T. and Sommer, G.}
    11130 }
    11131 @article{Boddeke1994,
    11132   number = {4},
    11133   year = {1994},
    11134   title = {Autofocusing in microscopy based on the {OTF} and sampling},
    11135   pages = {193-203},
    11136   journal = {Bioimaging},
    11137   volume = {2},
    11138   author = {Boddeke, F.R. and Vliet, L.J. van and Netten, H. and Young, I.T.}
    11139 }
    11140 @inproceedings{Breton1996,
    11141   year = {1996},
    11142   title = {Shadows and Shading Flow Fields},
    11143   booktitle = {Proc. IEEE Conference on Computer Vision and Pattern Recognition - CVPR'96},
    11144   pages = {782--789},
    11145   address = {San Francisco, USA},
    11146   author = {Breton, P. and Zucker, S.W.}
    11147 }
    11148 @article{Nikolaidis1998,
    11149   number = {12},
    11150   month = {December},
    11151   year = {1998},
    11152   title = {Nonlinear Processing and Analysis of Angular Signals},
    11153   pages = {3181--3194},
    11154   journal = {IEEE Transactions on Signal Processing},
    11155   volume = {46},
    11156   author = {Nikolaidis, N. and Pitas, I.}
    11157 }
    11158 @article{Monga1992,
    11159   number = {6},
    11160   year = {1992},
    11161   title = {From voxel to intrinsic surface features},
    11162   pages = {403--417},
    11163   journal = {Image and Vision Computing},
    11164   volume = {10},
    11165   author = {Monga, O. and Ayache,N. and Sander,P.T.}
    11166 }
    11167 @article{Monga1995,
    11168   number = {2},
    11169   year = {1995},
    11170   title = {Using Partial Derivatives of 3D Images to Extract Typical Surface Features},
    11171   pages = {171--189},
    11172   journal = {Computer Vision and Image Understanding},
    11173   volume = {61},
    11174   author = {Monga, O. and Benayoun, S.}
    11175 }
    11176 @article{Efros1997,
    11177   number = {6},
    11178   year = {1997},
    11179   title = {Random Telegraph Signal in the Photoluminescence Intensity of a Single Quantum Dot},
    11180   pages = {1110-1113},
    11181   journal = {Physical Review Letters},
    11182   volume = {78},
    11183   author = {Efros, A.L. and Rosen, M.}
    11184 }
    11185 @article{Illingworth1988,
    11186   number = {1},
    11187   year = {1988},
    11188   title = {A Survey of the {H}ough Transform},
    11189   pages = {87--116},
    11190   journal = {Computer Vision, Graphics and Image Processing},
    11191   volume = {44},
    11192   annote = {key_radon},
    11193   author = {Illingworth, J. and Kittler, J.}
    11194 }
    11195 @inproceedings{Dorst1993,
    11196   year = {1993},
    11197   title = {An Analytical Theory of Mathematical Morphology},
    11198   booktitle = {Mathematical Morphology and its Applications to Signal Processing},
    11199   pages = {245--250},
    11200   editor = {Serra, J. and Salembier, P.},
    11201   author = {Dorst, L. and Boomgaard, R. van den},
    11202   organization = {Universitat Politecnica de Catalunya (Barcelona, Spain)}
    11203 }
    11204 @article{Zwier2004,
    11205   number = {1},
    11206   year = {2004},
    11207   title = {Image calibration in fluorescence microscopy},
    11208   pages = {15-24},
    11209   journal = {Journal of Microscopy},
    11210   volume = {216},
    11211   author = {Zwier, J.M. and Rooij, G.J. van and Hofstraat, J.W. and Brakenhoff, G.J.}
    11212 }
    11213 @article{Heun2001,
    11214   number = {5549},
    11215   month = {December},
    11216   year = {2001},
    11217   title = {Chromoson Dynamics in the Yeast Interphase Nucleus},
    11218   pages = {2181-2187},
    11219   journal = {Science},
    11220   volume = {294},
    11221   author = {Heun, P. and Laroche, T. and Shimada, K. and Furrer, P. and Gasser, S.M.}
    11222 }
    11223 @inbook{Dorst1995,
    11224   year = {1995},
    11225   title = {World Scientific},
    11226   pages = {13--22},
    11227   editor = {Dori, D. and Bruckstein, A.},
    11228   chapter = {Orientation-based Representations for Mathematical Morphology},
    11229   author = {Dorst, L. and Boomgaard, R. van den}
    11230 }
    11231 @misc{Dorst1999,
    11232   month = {December},
    11233   year = {1999},
    11234   title = {{GABLE}: A Matlab Tutorial for Geometric Algebra},
    11235   author = {Dorst, L. and Mann, S. and Bouma, T.}
    11236 }
    11237 @article{Dorst1994,
    11238   year = {1994},
    11239   title = {Morphological Signal Processing and the Slope Transform},
    11240   pages = {79--98},
    11241   journal = {Signal Processing},
    11242   volume = {38},
    11243   author = {Dorst, L. and Boomgaard, R. van den}
    11244 }
    11245 @article{Lichte1996a,
    11246   year = {1996},
    11247   title = {Artefacts in electron holography},
    11248   pages = {67-77},
    11249   journal = {Ultramicroscopy},
    11250   volume = {64},
    11251   author = {Lichte, H. and Geiger, D. and Harscher, A. and Heindl, E. and Lehman, M. and Malamidis, D. and Orchowski, A. and Rau, W.-D.}
    11252 }
    11253 @article{Thust1996,
    11254   year = {1996},
    11255   title = {Numerical correction of lens aberrations in phase-retrieval {HRTEM}},
    11256   pages = {249-264},
    11257   journal = {Ultramicroscopy},
    11258   volume = {64},
    11259   author = {Thust, A. and Overwijk, M.H.F. and Coene, W.M.J. and Lentzen, M.}
    11260 }
    11261 @article{Katsevich1997,
    11262   number = {4},
    11263   month = {August},
    11264   year = {1997},
    11265   title = {Local Tomography for the Generalized Radon Transform},
    11266   pages = {1128--1162},
    11267   journal = {SIAM J. Appl. Math.},
    11268   volume = {57},
    11269   annote = {key_radon},
    11270   author = {Katsevich, A.I.}
    11271 }
    11272 @article{Lopez1999,
    11273   number = {4},
    11274   month = {April},
    11275   year = {1999},
    11276   title = {Evaluation of Methods for Ridge and Valley Detection},
    11277   pages = {327--335},
    11278   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11279   volume = {21},
    11280   author = {{L\'opez}, A.M. and Lumbreras, F. and Serrat, J. and Villanueva, J.J.}
    11281 }
    11282 @article{Beil1994,
    11283   year = {1994},
    11284   title = {Steerable Filters and Invariance Theory},
    11285   pages = {453--460},
    11286   journal = {Pattern Recognition Letters},
    11287   volume = {15},
    11288   author = {Beil, W.}
    11289 }
    11290 @book{Stauffer1985,
    11291   edition = {second},
    11292   year = {1985, 1994},
    11293   title = {Introduction to Percolation Theory},
    11294   publisher = {Taylor \& Francis},
    11295   author = {Stauffer, D. and Aharony, A.}
    11296 }
    11297 @inproceedings{Simoncelli1996a,
    11298   year = {1996},
    11299   title = {Noise Removal via Bayesian Wavelet Coring},
    11300   booktitle = {3rd IEEE International Conference on Image Processing (Lausanne, Switzerland)},
    11301   pages = {379--382},
    11302   author = {Simoncelli, E.P. and Adelson, E.H.}
    11303 }
    11304 @article{Shafarenko1997,
    11305   number = {11},
    11306   month = {November},
    11307   year = {1997},
    11308   title = {Automatic Watershed Segmentation of Randomly Textured Color Images},
    11309   pages = {1530--1544},
    11310   journal = {IEEE Transactions on Image Processing},
    11311   volume = {6},
    11312   author = {Shafarenko, Leila and Petrou, Maria and Kittler, Josef}
    11313 }
    11314 @article{Duhamel1988,
    11315   number = {2},
    11316   month = {February},
    11317   year = {1988},
    11318   title = {On Computing the Inverse DFT},
    11319   pages = {285--286},
    11320   journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
    11321   volume = {36},
    11322   annote = {key_fft},
    11323   author = {Duhamel, P. and Piron, B. and Etcheto, J.M.}
    11324 }
    11325 @article{Moser2006,
    11326   year = {2006},
    11327   title = {Filter cubes with built-in ultrabright light-emitting diodes as exchangeable excitation light sources in fluorescence microscopy},
    11328   pages = {135-140},
    11329   journal = {Journal of Microscopy},
    11330   volume = {222},
    11331   author = {Moser, C. and Mayr, T. and Klimant, I.}
    11332 }
    11333 @article{Morrone1988,
    11334   year = {1988},
    11335   title = {Feature Detection in Human Vision: a Phase-Dependent Energy Model},
    11336   pages = {221--245},
    11337   journal = {Proc. Roc. Soc. Lond. B},
    11338   volume = {235},
    11339   author = {Morrone, M.C. and Burr, D.C.}
    11340 }
    11341 @article{Giordano2002,
    11342   year = {2002},
    11343   title = {Diheteroarylethenes as Thermally Stable Photoswitchable Acceptors in Photochromic Fluorescence Resonance Energy Transfer ({pcFRET})},
    11344   pages = {7481-7489},
    11345   journal = {Journal of the American Chemical Society},
    11346   volume = {124},
    11347   author = {Giordano, L. and Jovin, T.M. and Irie, M. and Jare-Erijman, E.A.}
    11348 }
    11349 @article{Iddir2005,
    11350   year = {2005},
    11351   title = {Atomic scale characterization of the Pt/TiO$_2$ interface},
    11352   pages = {233-241},
    11353   journal = {Micron},
    11354   volume = {36},
    11355   author = {Iddir, H. and Disko, M.M. and Ogut, S. and Browning, N.D.}
    11356 }
    11357 @article{Bleau1992a,
    11358   number = {2},
    11359   month = {September},
    11360   year = {1992},
    11361   title = {A New Set of Fast Algorithms for Mathematical Morphology, {II}. Identification of Topographic Features on Grayscale Images},
    11362   pages = {210--229},
    11363   journal = {CVGIP: Image Understanding},
    11364   volume = {56},
    11365   author = {Bleau, A. and Guise, J. de and LeBlanc, A.-R.}
    11366 }
    11367 @article{Starink1996,
    11368   year = {1996},
    11369   title = {Background correction in scanning probe microscope recordings of macromolecules},
    11370   pages = {291-305},
    11371   journal = {Surface Science},
    11372   volume = {359},
    11373   author = {Starink, J.P.P. and Jovin, T.M.}
    11374 }
    11375 @inproceedings{Barth2000,
    11376   year = {2000},
    11377   title = {The minors of the structure tensor},
    11378   booktitle = {Mustererkennung 2000},
    11379   pages = {221--228},
    11380   editor = {Sommer, G. and Krger, N. and Perwass, C.},
    11381   address = {Berlin},
    11382   publisher = {Springer},
    11383   author = {Barth, E.}
    11384 }
    11385 @article{Sander2003,
    11386   year = {2003},
    11387   title = {Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra},
    11388   pages = {392-401},
    11389   journal = {Journal of Structural Biology},
    11390   volume = {142},
    11391   author = {Sander, B. and Golas, M.M. and Stark, H.}
    11392 }
    11393 @misc{Waagepetersen1997,
    11394   year = {1997},
    11395   title = {Contributions to the Statistical Modeling of Image Data and Spatial Point Processes},
    11396   note = {University of Aarhus},
    11397   howpublished = {www},
    11398   author = {Waagepetersen, R.}
    11399 }
    11400 @article{Hentschell1983,
    11401   number = {3},
    11402   year = {1983},
    11403   title = {The Infinite Number of Generalized Dimensions of Fractals and Strange Attractors},
    11404   pages = {435--444},
    11405   journal = {Physica D},
    11406   volume = {8},
    11407   author = {Hentschell, H.G.E. and Procaccia, I.}
    11408 }
    11409 @inproceedings{Croisier1976,
    11410   month = {August},
    11411   year = {1976},
    11412   title = {Perfect Channel Splitting by Use of Interpolation/Decimation/Tree Decomposition Techniques},
    11413   booktitle = {International Conference on Information Sciences and Systems},
    11414   pages = {443--446},
    11415   address = {Patras, Greece},
    11416   author = {Croisier, A. and Esteban, D. and Galand, C.}
    11417 }
    11418 @article{Barnard1980,
    11419   number = {4},
    11420   month = {July},
    11421   year = {1980},
    11422   title = {Disparity Analysis of Images},
    11423   pages = {527--534},
    11424   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11425   volume = {2},
    11426   author = {Barnard, S.T. and Thompson, W.B.}
    11427 }
    11428 @article{Desolneux2001,
    11429   year = {2001},
    11430   title = {Edge Detection by {Helmholtz} Principle},
    11431   pages = {271--284},
    11432   journal = {Journal of Mathematical Imaging and Vision},
    11433   volume = {14},
    11434   author = {Desolneux, A. and Moisan, L. and Morel, J.-M.}
    11435 }
    11436 @phdthesis{Picka1996,
    11437   month = {December},
    11438   year = {1996},
    11439   title = {Variance-Reducing Modifications for Estimators of Dependence in Random Sets},
    11440   address = {Chicago, USA},
    11441   school = {University of Chicago},
    11442   author = {Picka, J.D.}
    11443 }
    11444 @inproceedings{Dijk2003,
    11445   series = {Lecture Notes in Computer Science},
    11446   month = {Aug 25-27},
    11447   year = {2003},
    11448   title = {A new sharpness measure based on Gaussian lines and edges},
    11449   booktitle = {CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands)},
    11450   pages = {149-156},
    11451   editor = {Petkov, N. and Westenberg, M.A.},
    11452   volume = {2756},
    11453   address = {Berlin},
    11454   publisher = {Springer},
    11455   author = {Dijk, J. and Ginkel, M. van and Asselt, R.J. van and Vliet, L.J. van and Verbeek, P.W.}
    11456 }
    11457 @inproceedings{Dijk2002,
    11458   month = {June 19-21},
    11459   year = {2002},
    11460   title = {A new sharpness measure based on Gaussian lines and edges},
    11461   booktitle = {Proc. ASCI 2002, 8th Annual Conf. of the Advanced School for Computing and Imaging},
    11462   pages = {39--44},
    11463   editor = {Deprettere, E.F. and Belloum, A. and Heijnsdijk, J.W.J. and Stappen, F. van der},
    11464   address = {Delft},
    11465   publisher = {ASCI},
    11466   author = {Dijk, J. and Ginkel, M. van and Asselt, R.J. van and Vliet, L.J. van and Verbeek, P.W.}
    11467 }
    11468 @article{Bruijne2003,
    11469   year = {2003},
    11470   title = {Localization and segmentation of aortic endografts using marker detection},
    11471   pages = {473-482},
    11472   journal = {IEEE Transactions on Medical Imaging},
    11473   volume = {22},
    11474   author = {Bruijne, M. de and Niessen, W.J. and Maintz, J.B.A. and Viergever, M.A.}
    11475 }
    11476 @article{Rader1968,
    11477   number = {6},
    11478   month = {June},
    11479   year = {1968},
    11480   title = {Discrete {Fourier} Transforms When the Number of Data Samples is Prime},
    11481   pages = {1107--1108},
    11482   journal = {Proceedings of the IEEE},
    11483   volume = {56},
    11484   annote = {key_fft},
    11485   author = {Rader, C.M.}
    11486 }
    11487 @phdthesis{Robbins1996,
    11488   month = {August},
    11489   year = {1996},
    11490   title = {The Detection of {2D} Image Features using Local Energy},
    11491   address = {Australia},
    11492   school = {University of Western Australia},
    11493   author = {Robbins, B.J.}
    11494 }
    11495 @article{Ando2004,
    11496   year = {2004},
    11497   title = {Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting},
    11498   pages = {1370-1373},
    11499   journal = {Science},
    11500   volume = {306},
    11501   author = {Ando, R. and Muzuno, H. and Miyawaki, A.}
    11502 }
    11503 @article{Robbins1997,
    11504   number = {5},
    11505   year = {1997},
    11506   title = {{2D} Feature Detection via Local Energy},
    11507   pages = {353--368},
    11508   journal = {Image and Vision Computing},
    11509   volume = {15},
    11510   author = {Robbins, B. and Owens, R.}
    11511 }
    11512 @article{Stokke1990,
    11513   number = {13},
    11514   year = {1990},
    11515   title = {The reliability of wormlike polysaccharides chain dimensions estimated from electron micrographs},
    11516   pages = {1161-1181},
    11517   journal = {Biopolymers},
    11518   volume = {30},
    11519   author = {Stokke, B.T. and Brant, D.A.}
    11520 }
    11521 @article{Ando2000,
    11522   number = {3},
    11523   month = {March},
    11524   year = {2000},
    11525   title = {Consistent Gradient Operators},
    11526   pages = {252--265},
    11527   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11528   volume = {22},
    11529   author = {Ando, S.}
    11530 }
    11531 @techreport{Cullip1990,
    11532   year = {1990},
    11533   title = {Algorithms for 2D and 3D Image Description Based on the IAS},
    11534   note = {TR90-034},
    11535   institution = {University of North Carolina, U.S.A.},
    11536   author = {Cullip, T.J. and Fredericksen, R.E. and Gauch, J.M. and Pizer, S.M.}
    11537 }
    11538 @article{Dempster1977,
    11539   year = {1977},
    11540   title = {Maximum Likelihood from Incomplete Data via the {EM} algorithm},
    11541   pages = {1--37},
    11542   journal = {Journal of the Royal Statistical Society B},
    11543   volume = {39},
    11544   author = {Demster, A.P. and Laird, N.M. and Rubin, D.B.}
    11545 }
    11546 @article{Marshall1997,
    11547   number = {12},
    11548   year = {1998},
    11549   title = {Interphase chromosomes undergo constrained diffusional motion in living cells},
    11550   pages = {930-939},
    11551   journal = {Current Biology},
    11552   volume = {7},
    11553   author = {Marshall, W.F. and Straight, A. and Marko, J.F. and Swedlow, J. and Dernburg, A. and Murray, A.W. and Agard, D.A. and Sedat, J.W.}
    11554 }
    11555 @inproceedings{Borga1997,
    11556   month = {June 9-11},
    11557   year = {1997},
    11558   title = {Learning Canonical Correlations},
    11559   booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)},
    11560   pages = {1--8},
    11561   volume = {I},
    11562   author = {Borga, M. and Knutsson, H. and Landelius, T.}
    11563 }
    11564 @article{Perona1998,
    11565   number = {3},
    11566   month = {March},
    11567   year = {1998},
    11568   title = {Orientation Diffusions},
    11569   pages = {457--467},
    11570   journal = {IEEE Transactions on Image Processing},
    11571   volume = {7},
    11572   author = {Perona, P.}
    11573 }
    11574 @phdthesis{Borga1998,
    11575   year = {1998},
    11576   title = {Learning Multidimensional Signal Processing},
    11577   address = {{Link\"oping, Sweden}},
    11578   school = {{Link\"oping University}},
    11579   author = {Borga, M.}
    11580 }
    11581 @article{Perona1990,
    11582   number = {7},
    11583   month = {July},
    11584   year = {1990},
    11585   title = {Scale-Space and Edge Detection Using Anisotropic Diffusion},
    11586   pages = {629--639},
    11587   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11588   volume = {12},
    11589   author = {Perona, P. and Malik, J.}
    11590 }
    11591 @inproceedings{Wink2001,
    11592   year = {2001},
    11593   title = {Vessel Axis Determination Using Wave Front Propagation Analysis},
    11594   booktitle = {MICCAI'01},
    11595   pages = {845-853},
    11596   editor = {Niessen, W. and Viergever, M.A.},
    11597   author = {Wink, O. and Niessen, W.J. and Verdonck, B. and Viergever, M.A.}
    11598 }
    11599 @article{Perona1995,
    11600   number = {5},
    11601   month = {May},
    11602   year = {1995},
    11603   title = {Deformable Models for Early Vision},
    11604   pages = {488--499},
    11605   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11606   volume = {17},
    11607   author = {Perona, P.}
    11608 }
    11609 @book{Gauss1801,
    11610   year = {1801},
    11611   title = {Disquisitiones Arithmeticae},
    11612   address = {{G\"ottingen} },
    11613   publisher = {{K\"oniglichen Gesellschaft der Wissenschaft}},
    11614   author = {Gauss, C.F.}
    11615 }
    11616 @article{Dirks2003,
    11617   number = {1},
    11618   year = {2003},
    11619   title = {Visualizing {RNA} molecules inside the nucleus of living cells},
    11620   pages = {51-57},
    11621   journal = {Methods},
    11622   volume = {29},
    11623   author = {Dirks, R.W. and Molenaar, C. and Tanke, H.J.}
    11624 }
    11625 @article{Dirks2001,
    11626   number = {1},
    11627   year = {2001},
    11628   title = {Methods for visualizing RNA processing and transport pathways in living cells},
    11629   pages = {3-11},
    11630   journal = {Histochemistry and Cell Biology},
    11631   volume = {115},
    11632   author = {Dirks, R.W. and Molenaar, R.W. and Tanke, H.J.}
    11633 }
    11634 @article{Bangham1994,
    11635   number = {3},
    11636   year = {1994},
    11637   title = {Multiscale Median and Morphological Filters for 2D Pattern Recognition},
    11638   pages = {387--415},
    11639   journal = {Signal Processing},
    11640   volume = {38},
    11641   author = {Bangham, J.A. and Campbell, T.G. and Aldridge, R.V.}
    11642 }
    11643 @book{HandbookCP1992,
    11644   edition = {82th},
    11645   year = {1992},
    11646   title = {Handbook of Chemistry and Physics },
    11647   editor = {Lide, D.R. },
    11648   publisher = {CRC Press }
    11649 }
    11650 @article{Bangham1996,
    11651   number = {5},
    11652   month = {May},
    11653   year = {1996},
    11654   title = {Multiscale Nonlinear Decomposition: The Sieve Decomposition Theorem},
    11655   pages = {529--539},
    11656   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11657   volume = {18},
    11658   author = {Bangham, J.A. and Chardaire, P. and Pye, C.J. and Ling, P.D.}
    11659 }
    11660 @article{Clerc2002,
    11661   number = {4},
    11662   month = {April},
    11663   year = {2002},
    11664   title = {The Texture Gradient Equation for Recovering Shape from Texture},
    11665   pages = {536--549},
    11666   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11667   volume = {24},
    11668   author = {Clerc, M. and Mallat, S.}
    11669 }
    11670 @article{Dijkstra1959,
    11671   year = {1959},
    11672   title = {A note on two problems in connexion with graphs.},
    11673   pages = {269--271},
    11674   journal = {Numerische Mathematik },
    11675   volume = {1},
    11676   author = {Dijkstra, E.W.}
    11677 }
    11678 @article{Andrey1998,
    11679   number = {3},
    11680   month = {March},
    11681   year = {1998},
    11682   title = {Unsupervised Segmentation of {M}arkov Random Field Modeled Textured Images Using Selectionist Relaxation},
    11683   pages = {252--262},
    11684   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11685   volume = {20},
    11686   author = {Andrey, P. and Tarroux, P.}
    11687 }
    11688 @article{Hestenes1994,
    11689   number = {1},
    11690   year = {1994},
    11691   title = {Invariant Body Kinematics: {I}. Saccadic and Compensatory Eye Movements},
    11692   pages = {65--77},
    11693   journal = {Neural Networks},
    11694   volume = {7},
    11695   author = {Hestenes, D.}
    11696 }
    11697 @article{Osher1988,
    11698   year = {1988},
    11699   title = {Fronts Propagating with Curvature-Dependent Speed: Algorithms Based on {H}amilton-{J}acobi Formulations},
    11700   pages = {12--49},
    11701   journal = {Journal of Computational Physics},
    11702   volume = {79},
    11703   author = {Osher, S. and Sethian, J.A.}
    11704 }
    11705 @article{Ram2006,
    11706   number = {12},
    11707   year = {2006},
    11708   title = {Beyond {Rayleighs} criterion: {A} resolution measure with application to single-molecule microscopy},
    11709   pages = {4457-4462},
    11710   journal = {Proceedings of the National Academy of Sciences USA},
    11711   volume = {103},
    11712   author = {Ram, S. and Ward, E.S. and Ober, R.J.}
    11713 }
    11714 @article{Schwertner2004a,
    11715   number = {1},
    11716   year = {2004},
    11717   title = {Measurement of specimen induced aberrations of biological samples using phase stepping interferometry},
    11718   pages = {11-19},
    11719   journal = {Journal of Microscopy},
    11720   volume = {213},
    11721   author = {Schwertner, M. and Booth, M.J. and Neil, M.A.A. and Wilson, T.}
    11722 }
    11723 @article{Schwertner2004b,
    11724   number = {3},
    11725   year = {2004},
    11726   title = {Simulation of specimen-induced aberrations for objects with spherical and cylindrical symmetry},
    11727   pages = {271-280},
    11728   journal = {Journal of Microscopy},
    11729   volume = {215},
    11730   author = {Schwertner, M. and Booth, M.J. and Wilson, T.}
    11731 }
    11732 @article{Simoncelli1992,
    11733   number = {2},
    11734   month = {March},
    11735   year = {1992},
    11736   title = {Shiftable Multi-scale Transforms},
    11737   pages = {587--607},
    11738   journal = {IEEE Transactions on Information Theory},
    11739   volume = {38},
    11740   author = {Simoncelli, E.P. and Freeman, W.T. and Adelson, E.H. and Heeger, D.J.}
    11741 }
    11742 @article{Simoncelli1996,
    11743   number = {9},
    11744   year = {1996},
    11745   title = {Steerable wedge filters for local orientation analysis},
    11746   pages = {1377--1382},
    11747   journal = {IEEE Transactions on Image Processing},
    11748   volume = {5},
    11749   author = {Simoncelli, E.P. and Farid, H.}
    11750 }
    11751 @article{Viero1995,
    11752   number = {4},
    11753   month = {December},
    11754   year = {1995},
    11755   title = {Morphological Extraction of Line Networks from Noisy Low-Contrast Images},
    11756   pages = {335--347},
    11757   journal = {Journal of Visual Communication and Image Representation},
    11758   volume = {6},
    11759   author = {Viero, T. and Jeulin, D.}
    11760 }
    11761 @article{Simoncelli1990,
    11762   number = {4},
    11763   month = {April},
    11764   year = {1990},
    11765   title = {Non-Separable Extensions of Quadrature Mirror Filters to Multiple Dimensions},
    11766   pages = {652--664},
    11767   journal = {Proceedings of the IEEE},
    11768   volume = {78},
    11769   author = {Simoncelli, E.P. and Adelson, E.H.}
    11770 }
    11771 @inproceedings{Luengo2001b,
    11772   series = {Lecture Notes on Computer Science},
    11773   year = {2001},
    11774   title = {A Rotation-Invariant Morphology for Shape Analysis of Anisotropic Objects and Structures},
    11775   booktitle = {Proc. 4th International Workshop on Visual Form},
    11776   pages = {378--387},
    11777   editor = {Arcelli, C. and Cordella, L.P. and Sanniti, G. di Baja},
    11778   volume = {2059},
    11779   address = {Capri, Italy},
    11780   publisher = {Springer-Verlag},
    11781   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    11782 }
    11783 @inproceedings{Luengo2001a,
    11784   year = {2001},
    11785   title = {Segmentation-Free Estimation of Length Distributions Using Sieves and RIA Morphology},
    11786   booktitle = {Proc. 7th Annual Conference of the Advanced School for Computing and Imaging},
    11787   pages = {129--136},
    11788   address = {Heijen, the Netherlands},
    11789   publisher = {ASCI, Delft},
    11790   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    11791 }
    11792 @article{Khotanzad1990,
    11793   number = {5},
    11794   month = {May},
    11795   year = {1990},
    11796   title = {Invariant Image Recognition by {Z}ernike Moments},
    11797   pages = {489--497},
    11798   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11799   volume = {12},
    11800   author = {Khotanzad, A. and Hong, Y.H.}
    11801 }
    11802 @article{Lindenbaum1993,
    11803   number = {1},
    11804   year = {1993},
    11805   title = {On {G}abor's contribution to image enhancement},
    11806   pages = {1--8},
    11807   journal = {Pattern Recognition},
    11808   volume = {27},
    11809   author = {Lindenbaum, M. and Fischer, M. and Bruckstein, A.}
    11810 }
    11811 @article{Rose2002,
    11812   year = {2002},
    11813   title = {Theory of electron-optical achromats and apochromats},
    11814   pages = {293-303},
    11815   journal = {Ultramicroscopy},
    11816   volume = {93},
    11817   author = {Rose, H.}
    11818 }
    11819 @inproceedings{Hertzmann2001,
    11820   year = {2001},
    11821   title = {Image Analogies},
    11822   booktitle = {{SIGGRAPH}, Computer Graphics Proceedings},
    11823   pages = {327--340},
    11824   publisher = {ACM Press},
    11825   author = {Hertzmann, A. and Jacobs, C.E. and Oliver, N. and Curless, B. and Salesin, D.H.}
    11826 }
    11827 @article{Rose2005,
    11828   year = {2005},
    11829   title = {Prospects for aberration-free electron microscopy},
    11830   pages = {1-6},
    11831   journal = {Ultramicroscopy},
    11832   volume = {103},
    11833   author = {Rose, H.}
    11834 }
    11835 @article{Rioul1991,
    11836   month = {October},
    11837   year = {1991},
    11838   title = {Wavelets and Signal Processing},
    11839   pages = {14--38},
    11840   journal = {IEEE Signal Processing Magazine},
    11841   author = {Rioul, O. and Vetterli, M.}
    11842 }
    11843 @article{Torok1995,
    11844   number = {2},
    11845   year = {1995},
    11846   title = {Electromagnetic diffraction of light focused through a planar interface between materials of mismatched refractive indices: an integral representation},
    11847   pages = {325-332},
    11848   journal = {Journal of the Optical Society of America A},
    11849   volume = {12},
    11850   author = {{T\"or\"ok}, P. and Varga, P. and Laczik, Z. and Booker, G.R. }
    11851 }
    11852 @article{Acton2001,
    11853   year = {2001},
    11854   title = {Fast Algorithms for Area Morphology},
    11855   pages = {187--203},
    11856   journal = {Digital Signal Processing},
    11857   volume = {11},
    11858   author = {Acton, S.T.}
    11859 }
    11860 @article{Acton2000,
    11861   number = {4},
    11862   month = {April},
    11863   year = {2000},
    11864   title = {Scale Space Classification Using Area Morphology},
    11865   pages = {623--635},
    11866   journal = {IEEE Transactions on Image Processing},
    11867   volume = {9},
    11868   author = {Acton, Scott T. and Mukherjee, Dipti Prasad}
    11869 }
    11870 @article{Vonck2000,
    11871   year = {2000},
    11872   title = {Parameters a?ecting specimen flatness of two-dimensional crystals for electron crystallography},
    11873   pages = {123-129},
    11874   journal = {Ultramicroscopy},
    11875   volume = {85},
    11876   author = {Vonck, J.}
    11877 }
    11878 @book{Bishop1998,
    11879   year = {1998},
    11880   title = {Neural Networks for Pattern Recognition},
    11881   address = {New York},
    11882   publisher = {Oxford University Press},
    11883   author = {Bishop, C.M.}
    11884 }
    11885 @book{Bishop1995,
    11886   year = {1995},
    11887   title = {Neural Networks for Pattern Recognition},
    11888   publisher = {Oxford University Press},
    11889   author = {Bishop, C.M.}
    11890 }
    11891 @misc{Hough1962,
    11892   year = {1962},
    11893   title = {Method and Means for Recognizing Complex Patterns},
    11894   howpublished = {US misc nr. 3069654},
    11895   author = {Hough, P.V.C.}
    11896 }
    11897 @article{Clayton2004,
    11898   year = {2004},
    11899   title = {Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data},
    11900   pages = {1-5},
    11901   journal = {Journal of Microscopy},
    11902   volume = {213},
    11903   author = {Clayton, A.H.A. and Hanley, Q.S. and Verveer, P.J.}
    11904 }
    11905 @article{Maintz1996kort,
    11906   number = {4},
    11907   year = {1996},
    11908   title = {Evaluation of ridge seeking operators for multimodality medical image matching },
    11909   pages = {353--365},
    11910   journal = {PAMI},
    11911   volume = {18},
    11912   author = {Maintz, J.B.A. and Elsen, P.A. van den and Viergever, M.A. }
    11913 }
    11914 @phdthesis{SMALLSMALLGinkel2002,
    11915   year = {2002},
    11916   title = {Image Analysis using Orientation Space based on Steerable Filters},
    11917   address = {Delft, The Netherlands},
    11918   school = {Delft University of Technology},
    11919   author = {Ginkel, M. van}
    11920 }
    11921 @misc{Stereology2000,
    11922   month = {20-25 May},
    11923   year = {2000},
    11924   title = {Summer School on Stereology and Geometric Tomography},
    11925   note = {Sandberg Manor, Denmark },
    11926   howpublished = {www}
    11927 }
    11928 @article{Clayton2002,
    11929   number = {3},
    11930   year = {2002},
    11931   title = {Dynamic Fluorescence Anisotropy Imaging Microscopy in the Frequency Domain {(rFLIM)}},
    11932   pages = {1631-1649},
    11933   journal = {Biophysical Journal},
    11934   volume = {83},
    11935   author = {Clayton, A.H.A. and Hanley, Q.S. and Arndt-Jovin, D.J. and Subramaniam, V. and Jovin, T.M.}
    11936 }
    11937 @article{Desolneux2002,
    11938   number = {10},
    11939   year = {2002},
    11940   title = {Dequantizing image orientation},
    11941   pages = {1129--1140},
    11942   journal = {IEEE Transactions on Image Processing},
    11943   volume = {11},
    11944   author = {Desolneux, A. and Ladjal, S. and Moisan, L. and Morel, J.-M.}
    11945 }
    11946 @inproceedings{Bigun1987,
    11947   month = {June 8-11},
    11948   year = {1987},
    11949   title = {Optimal orientation detection of linear symmetry},
    11950   booktitle = {Proceedings of the first IEEE International Conference on Computer Vision},
    11951   pages = {433-438},
    11952   address = {London},
    11953   publisher = {IEEE Computer Society Press},
    11954   author = {{Big\"un}, J. and Granlund, G.H.}
    11955 }
    11956 @techreport{Bigun1986,
    11957   number = {LIU-TEK-LIC-1986:25},
    11958   title = {Circular Symmetry Models in Image Processing.},
    11959   note = {Thesis No. 85},
    11960   type = {Lic. Thesis},
    11961   address = {{Link\"oping University}, Sweden},
    11962   institution = {Computer Vision Laboratory},
    11963   author = {{Big\"un}, J.}
    11964 }
    11965 @article{Bowie1977a,
    11966   number = {6},
    11967   year = {1977},
    11968   title = {An Analysis Technique for Biological Shape -- {III}},
    11969   pages = {739--746},
    11970   journal = {Acta Cytologica},
    11971   volume = {21},
    11972   author = {Bowie, J.E. and Young, I.T.}
    11973 }
    11974 @article{Glossop1999,
    11975   number = {1},
    11976   month = {April},
    11977   year = {1999},
    11978   title = {An implementation of the Hough Transformation for the Identification and Labeling of Fixed Period Sinusoidal Curves},
    11979   pages = {96--100},
    11980   journal = {Computer Vision and Image Understanding},
    11981   volume = {74},
    11982   annote = {key_radon},
    11983   author = {Glossop, K. and Lisboa, P.J.G. and Russell, P.C. and Siddans, A. and Jones, G.R.}
    11984 }
    11985 @article{Crowley1984,
    11986   number = {2},
    11987   month = {March},
    11988   year = {1984},
    11989   title = {A Representation for Shape Based on Peaks and Ridges in the Difference of Low-Pass Transform},
    11990   pages = {156--170},
    11991   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    11992   volume = {6},
    11993   author = {Crowley, J.L. and Parker, A.C.}
    11994 }
    11995 @inproceedings{Kraaijveld2000,
    11996   month = {June 4-7},
    11997   year = {2000},
    11998   title = {Harnessing Advanced Image Analysis Technology for Quantitative Core and Borehole Image Interpretation},
    11999   booktitle = {proceedings of the 41st SPWLA annual symposium, Dallas},
    12000   pages = {paper VV},
    12001   author = {Kraaijveld, M.A. and Epping, W.J.M.}
    12002 }
    12003 @article{Joanicot1987,
    12004   number = {2},
    12005   year = {1987},
    12006   title = {{DNA} conformational studies from electron microscopy. {I. Excluded} volume effect and structure dimensionality},
    12007   pages = {315-326},
    12008   journal = {Biopolymers},
    12009   volume = {26},
    12010   author = {Joanicot, M. and Revet, B.}
    12011 }
    12012 @article{Brown2003,
    12013   number = {8},
    12014   month = {August},
    12015   year = {2003},
    12016   title = {Advances in Computational Stereo},
    12017   pages = {993--1007},
    12018   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12019   volume = {25},
    12020   author = {Brown, M.Z. and Burschka, D. and Hager, G.D.}
    12021 }
    12022 @article{Typke2004,
    12023   year = {2004},
    12024   title = {Electron Microscopy of Biological Macromolecules: Bridging the GAp between What Physics Allows and What We Currently Can Get},
    12025   pages = {21-27},
    12026   journal = {Microscopy and Microanalysis},
    12027   volume = {10},
    12028   author = {Typke, D. and Duwning, K.H. and Glaeser, R.M.}
    12029 }
    12030 @book{Simmonds1982,
    12031   year = {1982},
    12032   title = {A Brief on Tensor Analysis},
    12033   publisher = {Springer-Verlag},
    12034   author = {Simmonds, J.G.}
    12035 }
    12036 @article{Li2004,
    12037   number = {8},
    12038   year = {2004},
    12039   title = {A maximum likelihood approach for image registration using control point and intensity},
    12040   pages = {1115-1127},
    12041   journal = {IEEE Transactions on Image Processing},
    12042   volume = {13},
    12043   author = {Li, W. and Leung, W.}
    12044 }
    12045 @book{Cressie1993,
    12046   edition = {Revised},
    12047   year = {1993},
    12048   title = {Statistics for Spatial Data},
    12049   publisher = {John Wiley \& Sons, inc},
    12050   author = {Cressie, N.A.C.}
    12051 }
    12052 @article{McLaughlin1998,
    12053   number = {4},
    12054   month = {April},
    12055   year = {1998},
    12056   title = {The Hough Transform Versus the Upwrite},
    12057   pages = {396--400},
    12058   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12059   volume = {20},
    12060   annote = {key_radon},
    12061   author = {McLaughlin, R.A. and Alder, M.D.}
    12062 }
    12063 @inproceedings{Rieger2003b,
    12064   series = {LNCS 2756},
    12065   month = {August 25-27 },
    12066   year = {2003},
    12067   title = {Representing Orientation in n-Dimensional Spaces},
    12068   booktitle = {CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands) },
    12069   pages = {17-24},
    12070   editor = {Petkov, N. and Westenberg, M.A.},
    12071   address = {Berlin},
    12072   publisher = {Springer Verlag},
    12073   author = {Rieger, B. and Vliet, L.J. van}
    12074 }
    12075 @article{Rieger2003c,
    12076   number = {3},
    12077   year = {2003},
    12078   title = {Ring Formation in Nanoliter Cups: Quantitative Measurements of Flow in Micromachined Wells},
    12079   pages = {036312},
    12080   journal = {Physical Review E},
    12081   volume = {68},
    12082   author = {Rieger, B. and Doel, L.R. van den and Vliet, L.J. van }
    12083 }
    12084 @inproceedings{Rieger2003a,
    12085   month = {June 4-6},
    12086   year = {2003},
    12087   title = {Affine correction without correspondence applied to 4D cellular motion in confocal microscopy},
    12088   booktitle = {ASCI'03, Proceedings of the 9th Annual Conference of the Advanced School for Computing and Imaging (Lommel, Belgium) },
    12089   editor = {Vassiliadis, S. and Florak, L.M.J. and Heijnsdijk, J.W.J and Steen, A. van den},
    12090   author = {Rieger, B. and Molenaar, C. and Dirks, R.W. and Vliet, L.J. van}
    12091 }
    12092 @article{Grayson1987,
    12093   year = {1987},
    12094   title = {The heat equation shrinks embedded plane curves to round points},
    12095   pages = {285--314},
    12096   journal = {Journal of Differential Geometry},
    12097   volume = {26},
    12098   author = {Grayson, M.}
    12099 }
    12100 @article{Danielsson1990,
    12101   number = {2},
    12102   year = {1990},
    12103   title = {Rotation Invariance in Gradient and Higher Order Derivative Detectors},
    12104   pages = {198--221},
    12105   journal = {Computer Vision, Graphics, and Image Processing},
    12106   volume = {49},
    12107   author = {Danielsson, P.-E. and Seger, O.}
    12108 }
    12109 @article{Hanley2001,
    12110   year = {2001},
    12111   title = {Fluorescence Lifetime Imaging: Multi-point Calibration, Minimum Resolvable Differences, and Artifact Suppression},
    12112   pages = {248-260},
    12113   journal = {Cytometry},
    12114   volume = {43},
    12115   author = {Hanley, Q.S. and Subramaniam, V. and Arndt-Jovin, D.J. and Jovin, T.M.}
    12116 }
    12117 @article{Hanley2002,
    12118   number = {56},
    12119   year = {2002},
    12120   title = {Spectrally resolved fluorescence lifetime imaging microscopy},
    12121   pages = {155-166},
    12122   journal = {Applied Spectroscopy},
    12123   author = {Hanley, Q.S. and Ardent-Jovin, D.J. and Jovin, T.M.}
    12124 }
    12125 @article{Saffman1975,
    12126   number = {8},
    12127   year = {1975},
    12128   title = {Brownian motion in biolocial membranes},
    12129   pages = {3111-3113},
    12130   journal = {Proc. Nat. Acad. Sci. USA},
    12131   volume = {72},
    12132   author = {Saffman, P.G. and {Delbr\"uck}, M.}
    12133 }
    12134 @article{Casadio1999,
    12135   month = {February},
    12136   year = {1999},
    12137   title = {Characterization of the Range of the {Radon} Transform on Homogeneous Trees},
    12138   pages = {11--17},
    12139   journal = {Electronic Research Announcements of the American Mathematical Society},
    12140   volume = {5},
    12141   author = {Casadio Tarabusi, E. and Cohen, J.M. and Colonna, F.}
    12142 }
    12143 @article{Goldberg1991a,
    12144   number = {1},
    12145   year = {1991},
    12146   title = {What Every Computer Scientist Should Know about Floating-Point Arithmetic},
    12147   pages = {5--48},
    12148   note = {A reprint. Extended?},
    12149   journal = {ACM Computing Surveys},
    12150   volume = {23},
    12151   author = {Goldberg, D.}
    12152 }
    12153 @article{Willert1991,
    12154   year = {1991},
    12155   title = {Digital particle image velocimetry},
    12156   pages = {181-193},
    12157   journal = {Experiments in Fluids},
    12158   volume = {10},
    12159   author = {Willert, C.E. and Gharib, M.}
    12160 }
    12161 @article{Soille2001,
    12162   number = {11},
    12163   month = {November},
    12164   year = {2001},
    12165   title = {Directional Morphological Filtering},
    12166   pages = {1313--1329},
    12167   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12168   volume = {23},
    12169   author = {Soille, Pierre and Talbot, Hugues}
    12170 }
    12171 @article{Soille2002,
    12172   year = {2002},
    12173   title = {Short Survey on Morphological Operators Based on Rank Filters},
    12174   pages = {527-535},
    12175   journal = {Pattern Recognition},
    12176   volume = {35},
    12177   author = {Soille, P.}
    12178 }
    12179 @book{Landau1999,
    12180   edition = {third},
    12181   year = {1999},
    12182   title = {Statistical Physics, Part 1},
    12183   publisher = {Butterworth-Heinemann},
    12184   author = {Landau, L.D. and Lifshitz, E.M.}
    12185 }
    12186 @article{Rintoul1997,
    12187   year = {1997},
    12188   title = {Precise determination of the critical threshold and exponents in a three-dimensional continuum percolation model},
    12189   pages = {585--592},
    12190   journal = {J. Phys. A: Math Gen},
    12191   volume = {30},
    12192   author = {Rintoul, M.D. and Torquato, S.}
    12193 }
    12194 @article{Belongie2002,
    12195   number = {4},
    12196   month = {April},
    12197   year = {2002},
    12198   title = {Shape Matching and Object Recognition Using Shape Contexts},
    12199   pages = {509--522},
    12200   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12201   volume = {24},
    12202   author = {Belongie, S. and Malik, J. and Puzicha, J.}
    12203 }
    12204 @phdthesis{Reinders2001,
    12205   year = {2001},
    12206   title = {Feature-Based Visualization of Time-Dependent Data},
    12207   address = {The Netherlands},
    12208   school = {Delft University of Technology},
    12209   author = {Reinders, F.}
    12210 }
    12211 @article{Deans1981,
    12212   number = {2},
    12213   month = {March},
    12214   year = {1981},
    12215   title = {{H}ough Transform from the {R}adon Transform},
    12216   pages = {185--188},
    12217   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12218   volume = {3},
    12219   annote = {key_radon},
    12220   author = {Deans, S.R.}
    12221 }
    12222 @article{Meijering2003,
    12223   number = {4},
    12224   month = {April},
    12225   year = {2003},
    12226   title = {A Note on Cubic Convolution Interpolation},
    12227   pages = {477--479},
    12228   journal = {IEEE Transactions on Image Processing},
    12229   volume = {12},
    12230   author = {Meijering, E. and Unser, M.}
    12231 }
    12232 @article{Meijering2002,
    12233   number = {3},
    12234   month = {March},
    12235   year = {2002},
    12236   title = {A Chronology of Interpolation: From Ancient Astronomy to Modern Signal and Image Processing},
    12237   pages = {319--342},
    12238   journal = {Proceedings of the IEEE},
    12239   volume = {90},
    12240   author = {Meijering, E.}
    12241 }
    12242 @incollection{Jovin1989,
    12243   year = {1989},
    12244   title = {{FRET} Microscopy: Digital Imaging of Fluorescence Resonance Energy Transfer. Application in Cell Biology},
    12245   booktitle = {Cell Structure and Function by Microspectrofluorometry},
    12246   pages = {99-117},
    12247   editor = {Kohen, E.},
    12248   address = {New York},
    12249   publisher = {Academic Press},
    12250   author = {Jovin, T.M. and Arndt-Jovin, D.J.}
    12251 }
    12252 @article{Egner2004,
    12253   number = {1},
    12254   year = {2004},
    12255   title = {{4Pi}-microscopy of the {Golgi} apparatus in live mammalian cells},
    12256   pages = {70-76},
    12257   journal = {Journal of Structural Biology},
    12258   volume = {147},
    12259   author = {Egner, A. and Verrier, S. and Goroshkov, A. and Shing, H-D. and Hell, S.W.}
    12260 }
    12261 @article{Dorst1987,
    12262   year = {1987},
    12263   title = {Length Estimators for Digitized Contours},
    12264   pages = {311--333},
    12265   journal = {Computer Vision, Graphics and Image Processing},
    12266   volume = {40},
    12267   author = {Dorst, L. and Smeulders, A.W.M.}
    12268 }
    12269 @article{Dorst1986,
    12270   number = {2},
    12271   month = {March},
    12272   year = {1986},
    12273   title = {Best Linear Unbiased Estimators for Properties of Digitized Straight Lines},
    12274   pages = {276--282},
    12275   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12276   volume = {8},
    12277   author = {Dorst, L. and Smeulders, A.W.M.}
    12278 }
    12279 @incollection{Olver1994,
    12280   year = {1994},
    12281   title = {Differential invariant signatures and flows in computer vision: a symmetry group approach},
    12282   booktitle = {Geometry-driven diffusion in computer vision},
    12283   pages = {255--306},
    12284   editor = {Ter Haar Romeny B.M.},
    12285   chapter = {11},
    12286   publisher = {Kluwer Academic Publishers},
    12287   author = {Olver, P. and Sapiro, G. and Tannenbaum, A.}
    12288 }
    12289 @techreport{Dorst1980,
    12290   year = {1980},
    12291   title = {A Coordinate System for the Crystal Ball},
    12292   institution = {CERN},
    12293   author = {Dorst, L.}
    12294 }
    12295 @article{Hoyer2002,
    12296   number = {2},
    12297   year = {2002},
    12298   title = {Dependence of $\alpha$-synuclein aggregate morphology on solution conditions},
    12299   pages = {383-393},
    12300   journal = {Journal of Molecular Biology},
    12301   volume = {322},
    12302   author = {Hoyer, W. and Antony, T. and Cherny, D.I. and Heim, G. and Jovin, T.M. and Subramaniam, V.}
    12303 }
    12304 @inproceedings{Ginneken1999,
    12305   series = {Lecture Notes on Computer Science},
    12306   title = {Applications of Locally Orderless Images},
    12307   booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)},
    12308   pages = {10--21},
    12309   editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
    12310   volume = {1682},
    12311   publisher = {Springer-Verlag},
    12312   author = {Ginneken, B. van and Haar Romeny, B. M. ter}
    12313 }
    12314 @article{Mitiche1988,
    12315   number = {6},
    12316   year = {1988},
    12317   title = {On smoothness of a vector field-application to optical flow},
    12318   pages = {943--949},
    12319   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    12320   volume = {10},
    12321   author = {Mitiche, A. and Grisell, R. and Aggarwal, J.K.}
    12322 }
    12323 @article{Cognet1999,
    12324   number = {3},
    12325   year = {1999},
    12326   title = {Static curvature and flexibility measurements of {DNA} with microscopy. {A} simple renormalization method, its assessment by experiment and simulation},
    12327   pages = {997-1009},
    12328   journal = {Journal of Molecular Biology},
    12329   volume = {285},
    12330   author = {Cognet, J.A.H. and Pakleza, C. and Cherny, D.I. and Delain, E. and Cam, E. le}
    12331 }
    12332 @article{Segall2006,
    12333   year = {2006},
    12334   title = {Volume-Exclusion Effects in Tethered-Particle Experiments: Bead Size Matters},
    12335   pages = {088306},
    12336   journal = {Physical Review Letters},
    12337   volume = {96},
    12338   author = {Segall, D.E. and Nelson, P.C. and Phillips, R.}
    12339 }
    12340 @article{Krieger1996,
    12341   number = {6},
    12342   month = {June},
    12343   year = {1996},
    12344   title = {Nonlinear Image Operators for the Evaluation of Local Intrinsic Dimensionality},
    12345   pages = {1026--1042},
    12346   journal = {IEEE Transactions on Image Processing},
    12347   volume = {5},
    12348   author = {Krieger, G. and Zetzsche, C.}
    12349 }
    12350 @book{Rudin1991,
    12351   edition = {second},
    12352   year = {1991, 1973},
    12353   title = {Functional Analysis},
    12354   publisher = {McGraw-Hill},
    12355   author = {Rudin, W.}
    12356 }
    12357 @article{Mattfeldt2000a,
    12358   month = {November},
    12359   year = {2000},
    12360   title = {Improved Estimation of the Pair Correlation Function of Random Sets},
    12361   pages = {158--173},
    12362   journal = {Journal of Microscopy},
    12363   volume = {200, Pt 2},
    12364   author = {Mattfeldt, T. and Stoyan, D.}
    12365 }
    12366 @article{Toprak2007,
    12367   number = {7},
    12368   year = {2007},
    12369   title = {Three-Dimensional Particle Tracking via Bifocal Imaging},
    12370   pages = {2043-2045},
    12371   journal = {Nano Letter},
    12372   volume = {7},
    12373   author = {Toprak, E. and Balci, H. and Blehm, B.H. and  Selvin, P.R.}
    12374 }
    12375 @article{Xu2010,
    12376   year = {2010},
    12377   title = {From thickness dependent exit waves to projected potential: Thickness derivative approach},
    12378   pages = {535-542},
    12379   journal = {Ultramicroscopy},
    12380   volume = {110},
    12381   author = {Xu, Q. and Dyck, D. van and Zandbergen, H.W.}
    12382 }
    12383 @article{Zewail2010,
    12384   year = {2010},
    12385   title = {Four-Dimensional Electron Microscopy},
    12386   pages = {187-193},
    12387   journal = {Science},
    12388   volume = {328},
    12389   author = {Zewail, A. H. and }
    12390 }
    12391 @article{Pertsinidis2010,
    12392   year = {2010},
    12393   title = {Subnanometre single-molecule localization, registration and distance measurements},
    12394   journal = {Nature},
    12395   author = {Pertsinidis, A. and Zhang, Y. and Chu, S.}
    12396 }
    12397 @article{Okamoto2010,
    12398   year = {2010},
    12399   title = {Subnanometre single-molecule localization,
    12400 registration and distance measurements},
    12401   pages = {043807},
    12402   journal = {Physical Review A},
    12403   volume = {38},
    12404   author = {Okamoto, H.}
    12405 }
    12406 @article{Muller2010,
    12407   year = {2010},
    12408   title = {Image Scanning Microscopy},
    12409   pages = {198101},
    12410   journal = {Physical Review Letters},
    12411   volume = {104},
    12412   author = {{M\"uller}, C.B. and Enderlein, J.}
    12413 }
    12414 @article{Jonge2010,
    12415   year = {2010},
    12416   title = {Nanometer-resolution electron microscopy through micrometers-thick water layers},
    12417   pages = {1114-1119},
    12418   journal = {Ultramicroscopy},
    12419   volume = {110},
    12420   author = {Jonge, N. de and Poirier-Demes, N. and Dermes, H. and Peckys, D.B. and Drouin, D.}
    12421 }
    12422 @article{Kouskousis2010,
    12423   number = {7},
    12424   year = {2010},
    12425   title = {Super-resolution imaging and statistical analysis
    12426 of {CdSe/CdS} Core/Shell semiconductor nanocrystals},
    12427   pages = {437-445},
    12428   journal = {Journal of Biophotonics},
    12429   volume = {3},
    12430   author = {Kouskousis, B.P. and Embden J. van and Morrish, D. and Russell, S.M. and Gu, M.}
    12431 }
    12432 @article{Stark2001,
    12433   year = {2001},
    12434   title = {Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle},
    12435   pages = {539-541},
    12436   journal = {Nature},
    12437   volume = {409},
    12438   author = {Stark, H. and Dube, P. and {L\"uhrmann}, R. and Kastner, B.}
    12439 }
    12440 @article{Milazzo2010,
    12441   year = {2010},
    12442   title = {Characterization of a direct detection device imaging camera for transmission electron microscopy},
    12443   pages = {744-747},
    12444   journal = {Ultramicroscopy},
    12445   volume = {110},
    12446   author = {Milazzo, A-C. and Moldovan, G. and Lanman, J. and Jin, L. and Bouwer, J.C. and Klienfelder, S. and Peltier, S.T. and Ellisman, M.H. and Kirkland, A.I. and Xoung, N.-H.}
    12447 }
    12448 @article{Lupini2010,
    12449   year = {2010},
    12450   title = {Aberration measurement using the Ronchigram contrast transfer function},
    12451   pages = {891-898},
    12452   journal = {Ultramicroscopy},
    12453   volume = {110},
    12454   author = {Lupini, A.R. and Wang, P. and Nellist, P.D. and Kirkland, A.I. and Pennycook, S.J.}
    12455 }
    12456 @article{Saxton1982,
    12457   number = {2},
    12458   year = {1982},
    12459   title = {The correlation averaging of a regularly arranged bacterial cell envelope protein},
    12460   pages = {127-138},
    12461   journal = {Journal of Microscopy},
    12462   volume = {127},
    12463   author = {Saxton, W.O and Baumeister, W.}
    12464 }
    12465 @article{Rudnaya2010,
    12466   year = {2010},
    12467   title = {Evaluating sharpness functions for automated scanning
    12468 electron microscopy},
    12469   journal = {Journal of Microscopy},
    12470   author = {Rudnaya, M.E. and Mattheij, R.M.M. and Maubach, J.M.L.}
    12471 }
    12472 @inproceedings{Brinkers2010,
    12473   month = {April 14-17},
    12474   year = {2010},
    12475   title = {Single Molecule Detection Of Tuberculosis Nucleic Acid Using Dark Field Tethered Particle Motion},
    12476   booktitle = {IEEE International Symposium on Biomedical Imaging},
    12477   pages = {1269},
    12478   address = {Rotterdam, The Netherlands},
    12479   author = {Brinkers, Sanneke and Dietrich, Heidelinde R. C. and Stallinga, Sjoerd and Mes, Jurriaan J. and Young, Ian T. and Rieger, Bernd}
    12480 }
    12481 @article{Cordes2010,
    12482   year = {2010},
    12483   title = {Single-Molecule Redox Blinking of Perylene Diimide
    12484 Derivatives in Water},
    12485   journal = {Journal of the American Chemical Society},
    12486   author = {Cordes, T. and Vogelsang, J. and Anaya, M. and Spaguolo, C. and Gietl, A. and Summerer, W. and Herrmann, A. and {M\"ullen}, K. and Tinnefeld, P.}
    12487 }
    12488 @article{Jiang2010,
    12489   year = {2010},
    12490   title = {A novel approximation method of CTF amplitude correction of 3D single particle reconstruction},
    12491   journal = {Ultramicroscopy},
    12492   author = {Jiang, L. and Liu, Z. and Georgieva, D. and Kuil, M.E. and Abrahams, J.P.}
    12493 }
    12494 @article{Dwyer2010,
    12495   year = {2010},
    12496   title = {Simulation of scanning transmission electron microscope images on desktop computers},
    12497   pages = {195-198},
    12498   journal = {Ultramicroscopy},
    12499   volume = {110},
    12500   author = {Dwyer, C.}
    12501 }
    12502 @article{Tamura2010,
    12503   year = {2010},
    12504   title = {Third-order spherical aberration correction using multistage self-aligned quadrupole correction-lens systems},
    12505   journal = {Journal of Electron Microscopy},
    12506   author = {Tamrua, K. and Okayama, S. and Shimizu, R.}
    12507 }
    12508 @article{Paik2009,
    12509   number = {8},
    12510   year = {2009},
    12511   title = {Integrating a High-Force Optical Trap with Gold Nanoposts and a Robust Gold-DNA Bond},
    12512   pages = {2978-2983},
    12513   journal = {Nano Letters},
    12514   volume = {9},
    12515   author = {Paik, D.H. and Seol, Y. and Halsey, W.A. and Perkins, T.T.}
    12516 }
    12517 @article{Oijen1998,
    12518   year = {1998},
    12519   title = {3-Dimensional super-resolution by spectrally selective imaging},
    12520   pages = {183-187},
    12521   journal = {Chemical Physics Letters},
    12522   volume = {292},
    12523   author = {Oijen, A.M. van and {K\"ohler}, J. and Schmidt, J. and {M\"uller}, M. and Brakenhoff, G.J.}
    12524 }
    12525 @article{Marzetta1993,
    12526   number = {6},
    12527   year = {1993},
    12528   title = {A Simple derivation of the constrained multiple parameter Cramer-Rao Bound},
    12529   pages = {2247-2249},
    12530   journal = {IEEE Transactions on Signal Processing},
    12531   volume = {41},
    12532   author = {Marzetta, T.L.}
    12533 }
    12534 @article{Mortensen2010,
    12535   number = {5},
    12536   year = {2010},
    12537   title = {Optimized localization analysis for single-molecule tracking and super-resolution microscopy},
    12538   pages = {377-384},
    12539   journal = {Nature Methods},
    12540   volume = {7},
    12541   author = {Mortensen, K.I. and Churchman, L.S. and Spudich, J.A. and Flyvbjerg}
    12542 }
    12543 @article{Chang2010,
    12544   year = {2010},
    12545   title = {Zernike Phase Plate Cryoelectron Microscopy
    12546 Facilitates Single Particle Analysis of Unstained
    12547 Asymmetric Protein Complexes},
    12548   pages = {17-27},
    12549   journal = {Structure},
    12550   volume = {18},
    12551   author = {Chang, W-H. and Chiu, M.T.K. and CHen, C.-Y. and Yen, C.F. and Lin,Y.-C. and Weng, Y.-P. and Chang, J.-C. and Wu, Y.-M. and Cheng, H. and Fu, J. and Tu, I-P.}
    12552 }
    12553 @article{Smith2010,
    12554   number = {5},
    12555   year = {2010},
    12556   title = {Fast, single-molecule localization that achieves theoretically minimum uncertainty},
    12557   pages = {373-375},
    12558   journal = {Nature Methods},
    12559   volume = {7},
    12560   author = {Smith, C.S. and Joseph, N. and Rieger, B. and Lidke, K.A.}
    12561 }
    12562 @article{Serge2008,
    12563   number = {8},
    12564   year = {2008},
    12565   title = {Dynamic multiple-target tracing to probe
    12566 spatiotemporal cartography of cell membranes},
    12567   pages = {687-694},
    12568   journal = {Nature Methods},
    12569   volume = {5},
    12570   author = {Serge, A. and Bertaux, N. and Rigneault, H. and Marguet, D.}
    12571 }
    12572 @article{Aguet2005,
    12573   number = {26},
    12574   year = {2005},
    12575   title = {Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes},
    12576   pages = {10503-10522},
    12577   journal = {Optics Express},
    12578   volume = {13},
    12579   author = {Aguet, F. and Ville, D. van de and Unser, M.}
    12580 }
    12581 @article{Harauz1997,
    12582   number = {4},
    12583   year = {1997},
    12584   title = {Exact filters for general geometry three dimensional reconstruction},
    12585   pages = {146-156},
    12586   journal = {Optik},
    12587   volume = {78},
    12588   author = {Harauz, G. and Heel, M. van}
    12589 }
    12590 @article{Lingwood2009,
    12591   year = {2009},
    12592   title = {Lipid rafts as a membrane organizing principle},
    12593   pages = {46-53},
    12594   journal = {Science},
    12595   volume = {327},
    12596   author = {Lingwood, D. and Simons, K.}
    12597 }
    12598 @article{Baddeley2010,
    12599   year = {2010},
    12600   title = {Visualization of localization microscopy data},
    12601   pages = {64-72},
    12602   journal = {Microscopy and Microanalysis},
    12603   volume = {16},
    12604   author = {Baddeley, D. and Cannell, M.B. and Soeller, C.}
    12605 }
    12606 @inbook{Krivanek2010,
    12607   year = {2010},
    12608   title = {Advances in Imaging and Electron Physics},
    12609   pages = {121-160},
    12610   volume = {153},
    12611   chapter = {Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy},
    12612   publisher = {Elsevier},
    12613   author = {Krivanek, O.L. and Delby, N. and Keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.}
    12614 }
    12615 @article{Jaqaman2008,
    12616   number = {8},
    12617   year = {2008},
    12618   title = {Robust single-particle tracking in live-cell time-lapse sequences},
    12619   pages = {695-702},
    12620   journal = {Nature Methods},
    12621   volume = {5},
    12622   author = {Jaqaman, K. and Loerke, D. and Mettlen, M. and Kuwara, H. and Grinstein, S. and Schmid, S.L. and Danuser, G.}
    12623 }
    12624 @article{Li2010,
    12625   year = {2010},
    12626   title = {Measurement of the Instantaneous Velocity of a Brownian Particle},
    12627   pages = {1673-1676},
    12628   journal = {Science},
    12629   volume = {328},
    12630   author = {Li, T. and Kheifets, S. and Medellin, D. and Raizen, M.G.}
    12631 }
    12632 @article{Kwon2010,
    12633   number = {328},
    12634   year = {2010},
    12635   title = {4D Electron Tomography},
    12636   pages = {1668-1673},
    12637   journal = {Science},
    12638   author = {Kwon, O.-H. and Zewail, A.H.}
    12639 }
    12640 @article{Brinkers2009,
    12641   number = {21},
    12642   year = {2009},
    12643   title = {The Persistence Length of Double Stranded {DNA} Determined Using Dark Field Tethered Particle Motion},
    12644   pages = {215105},
    12645   journal = {Journal of Chemical Physics},
    12646   volume = {130},
    12647   author = {Brinkers, S. and Dietrich, H.R.C. and Groote, F.H. de and Young, I.T. and Rieger, B.}
    12648 }
    12649 @article{Snijdervanderas2009,
    12650   number = {1},
    12651   year = {2009},
    12652   title = {A hybrid total internal reflection fluorescence and optical tweezers microscope to study cell adhesion and membrane protein dynamics of single living cells },
    12653   pages = {84-92},
    12654   journal = {Journal of Microscopy},
    12655   volume = {223},
    12656   author = {Snijder-van As, M.I. and Rieger, B. and Joosten, B. and Figdor, C. and Subramaniam, V. and Kanger, J.S.}
    12657 }
    12658 @article{Faas2009,
    12659   number = {4},
    12660   year = {2009},
    12661   title = {{DNA} deformations near charged surfaces: electron and atomic force microscopy views},
    12662   pages = {1148-1157},
    12663   journal = {Biophysical Journal},
    12664   volume = {97},
    12665   author = {Faas, F.G.A. and Rieger, B. and Vliet, L.J. van and Cherny, D.I.}
    12666 }
    12667 @article{Castaldo2008,
    12668   number = {6},
    12669   year = {2008},
    12670   title = {Sputtering limits versus signal-to-noise limits in the observation of {Sn} balls in a {Ga+} microscope},
    12671   pages = {2107-2115},
    12672   journal = {Journal of Vacuum Science and Technology B},
    12673   volume = {26},
    12674   author = {Castaldo, V. and  Hagen, C.W. Rieger, B. and Kruit, P.}
    12675 }
    12676 @article{Lidke2010,
    12677   year = {2010},
    12678   title = {{ERK} nuclear translocation is dimerization-independent but controlled by the rate of phosphorylation},
    12679   pages = {3092-3102},
    12680   journal = {Journal of Biological Chemistry},
    12681   volume = {285},
    12682   author = {Lidke, D.S. and Huang, F. and Post, J.N. and Rieger, B. and Thomas, J.L.and Pouyssegur, J. and Jovin, T.M. and Lenormand, P. }
    12683 }
    12684 @inbook{Hagen2008,
    12685   year = {2008},
    12686   title = {Single Molecule Dynamics in Life Sciences},
    12687   pages = {117-130},
    12688   editor = {Yanagida, T. and Ishii, Y.},
    12689   chapter = {Dynamics of membrane receptors: single molecule tracking of quantm dot liganded epidermal growth factor},
    12690   publisher = {Wiley},
    12691   author = {Hagen, G.M. and Lidke, K.A. and Rieger, B. and Lidke,  D.S. and Caarls, W. and  Arndt-Jovin, D.J. and Jovin, T.M.}
    12692 }
    12693 @article{Haider2010,
    12694   year = {2010},
    12695   title = {Information Transfer in a TEM Corrected for Spherical
    12696 and Chromatic Aberration},
    12697   pages = {393-408},
    12698   journal = {Microscopy and Microanalysis},
    12699   volume = {16},
    12700   author = {Haider, M .and Hartel, P. and {M\"uller}, H. and Uhlemann, S. and Zach, J.}
    12701 }
    12702 @article{Borgnia2004,
    12703   year = {2004},
    12704   title = {Visualization of $\alpha$-helical features in a density map constructed using 9 molecular images of the {1.8MDa} icosahedral core of pyruvate dehydrogenase},
    12705   pages = {136-145},
    12706   journal = {Journal of Structural Biology},
    12707   volume = {147},
    12708   author = {Borgnia, M.J. and Shi, D. and Zhang, P. and Milne, J.L.S.}
    12709 }
    12710 @article{Dubochet1988,
    12711   year = {1988},
    12712   title = {Cryo-electron microscopy of vitrified specimens},
    12713   pages = {129-228},
    12714   journal = {Quarterly Review of Biophysics},
    12715   volume = {21},
    12716   author = {Dubochet, J. and Adrian, M. and Chang, J.-J. and Homo, J.-C. and Lepault, J. and McDowall, A.W.and Schultz, P.}
    12717 }
    12718 @article{Khursheed2007,
    12719   year = {2007},
    12720   title = {Redesign of the scanning electron microscope for parallel energy spectral acquisition},
    12721   pages = {151-157},
    12722   journal = {Ultramicroscopy},
    12723   volume = {108},
    12724   author = {Khursheed, A. and Hoang, H.Q.}
    12725 }
    12726 @article{Arslan2006,
    12727   year = {2006},
    12728   title = {Reducing the missing wedge: High-resolution dual axis tomography of inorganic materials},
    12729   pages = {944-1000},
    12730   journal = {Ultramicroscopy},
    12731   volume = {106},
    12732   author = {Arslan, I. and Tong, J.R. and Midgley, P.A.}
    12733 }
    12734 @article{Dierksen1992,
    12735   year = {1992},
    12736   title = {Towards automatic electron tomography},
    12737   pages = {71-87},
    12738   journal = {Ultramicroscopy},
    12739   volume = {40},
    12740   author = {Dierksen, K. and Typke, D. and Hegerl, R. and Koster, A.J. and Baumeister, W.}
    12741 }
    12742 @book{Born1999,
    12743   edition = {7th},
    12744   year = {1999},
    12745   title = {Principles of Optics},
    12746   publisher = {Cambridge University Press},
    12747   author = {Born, M. and Wolf, E.}
    12748 }
    12749 @article{Dyck1996,
    12750   year = {1996},
    12751   title = {Sub-{\aa}ngstr{\"o}m structure characterisation: the {Brite-Euram} route towarde one {\AA}ngstr{\"o}m},
    12752   pages = {1-15},
    12753   journal = {Ultramicroscopy},
    12754   volume = {64},
    12755   author = {Dyck, D. van and Lichte, H. and Mast, K.D. van der}
    12756 }
    12757 @article{Billinge2007,
    12758   year = {2007},
    12759   title = {The Problem with Determining Atomic Structure at the Nanoscale},
    12760   pages = {561-565},
    12761   journal = {Science},
    12762   volume = {316},
    12763   author = {Billinge, S.J.L. and Levin, I.}
    12764 }
    12765 @article{Stoeger2008,
    12766   year = {2008},
    12767   title = {Optical properties and bandgaps from low loss EELS: Pitfalls and solutions},
    12768   pages = {1092-1110},
    12769   journal = {Micron},
    12770   volume = {39},
    12771   author = {Stoeger-Pollach, M.}
    12772 }
    12773 @article{Kim1997a,
    12774   year = {1997},
    12775   title = {Performance of Zr/O/W Schottky emitters at reduced temperatures},
    12776   pages = {2284-2288},
    12777   journal = {Journal of Vaccum Science and Technology B},
    12778   volume = {15},
    12779   author = {Kim, H.S. and Yu, M.L. and Thomson, M.G.R. and Kratchmer, E. and Chang, T.H.P.}
    12780 }
    12781 @inproceedings{Mitterbauer2003a,
    12782   year = {2003},
    12783   title = {High energy resolution {EELS} using a monochromoized {200kV TEM}: Comparative investigation of titanum oxides},
    12784   booktitle = {Microscoc. Microanal.},
    12785   pages = {1-2},
    12786   volume = {9S3},
    12787   author = {Mitterbauer, C. and Kothleitner, G. and Hofer, F. and Tiemeijer, P.C. and Freitag, B.H. and Zandbergen, H.W.}
    12788 }
    12789 @article{Gyobu2004,
    12790   year = {2004},
    12791   title = {Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique},
    12792   pages = {325-333},
    12793   journal = {Journal of Structural Biology},
    12794   volume = {146},
    12795   author = {Gyobu, N. and Tani, K. and Hiroaki, Y. and Kamegawa, A. and Mitsuoka, K. and Fujiyoshi, Y.}
    12796 }
    12797 @article{Hebert2003,
    12798   year = {2003},
    12799   title = {A proposal for dichroic experiments in the electron microscope},
    12800   pages = {463-468},
    12801   journal = {Ultramicroscopy},
    12802   volume = {96},
    12803   author = {Hebert, C. and Schattschneider, P.}
    12804 }
    12805 @article{Oshima2010,
    12806   year = {2010},
    12807   title = {Direct imaging of lithium atoms in {$LiV_2O_4$} by spherical aberration-corrected electron microscopy},
    12808   pages = {1-5},
    12809   journal = {Journal of Electron Microscopy},
    12810   author = {Oshima, Y. and et al.}
    12811 }
    12812 @article{Ishitani2002,
    12813   number = {6},
    12814   year = {2002},
    12815   title = {Contrast-to-gradient method for the evaluation of image resolution in scanning electron microscopy},
    12816   pages = {369-382},
    12817   journal = {Journal of Electron Mircoscopy},
    12818   volume = {51},
    12819   author = {Ishitani, T. and Sato, M.}
    12820 }
    12821 @article{Ishitani2005,
    12822   number = {2},
    12823   year = {2005},
    12824   title = {Influence of random noise on the contrast-to-gradient image resolution in scanning electron microscopy},
    12825   pages = {85-97},
    12826   journal = {Journal of Electron Mircoscopy},
    12827   volume = {54},
    12828   author = {Ishitani, T. and Kamiya, C. and Sato, M.}
    12829 }
    12830 @article{Ishitani2004,
    12831   number = {3},
    12832   year = {2004},
    12833   title = {Contrast-to-gradient method for the evaluation of image resolution taking account of random noise in scanning electron microscopy},
    12834   pages = {245-255},
    12835   journal = {Journal of Electron Mircoscopy},
    12836   volume = {53},
    12837   author = {Ishitani, T. and Sato, M.}
    12838 }
    12839 @article{Loane1991,
    12840   year = {1991},
    12841   title = {Thermal vibrations in convergent-beam electron diffraction},
    12842   pages = {267-278},
    12843   journal = {Acta Crystallography},
    12844   volume = {A47},
    12845   author = {Loane, R.F. and Xu, P. and Slicox, J.}
    12846 }
    12847 @article{Zaneti2009,
    12848   year = {2009},
    12849   title = {Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging},
    12850   pages = {305-312},
    12851   journal = {Journal of Structural Biology},
    12852   volume = {168},
    12853   author = {Zaneti, G. and Riches, J.D. and Fuller, S.D. and Briggs, J.A.G.}
    12854 }
    12855 @article{Diez2006,
    12856   number = {2},
    12857   year = {2006},
    12858   title = {Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis},
    12859   pages = {195-205},
    12860   journal = {Journal of Strcutural Biology},
    12861   volume = {154},
    12862   author = {Diez, D.C. and Seybert, A. and Frangakis, A.S.}
    12863 }
    12864 @article{Diez2007,
    12865   year = {2007},
    12866   title = {Implementation and performance evaluation of reconstruction algorithms on graphics processors},
    12867   pages = {288-295},
    12868   journal = {Journal of Strcutural Biology},
    12869   volume = {157},
    12870   author = {Diez, C.D. and Mueller, H. and Frangakis, A.S.}
    12871 }
    12872 @article{Barth1996,
    12873   year = {1996},
    12874   title = {Addition of different contributions to the charged particle probe size},
    12875   pages = {101-109},
    12876   journal = {Optik},
    12877   volume = {101},
    12878   author = {Barth, J.E. and Kruit, P.}
    12879 }
    12880 @article{Uchida2010,
    12881   year = {2010},
    12882   title = {Generation of electron beams carrying orbital angular momentum},
    12883   journal = {Nature},
    12884   volume = {464},
    12885   author = {Uchida, M. and Tonomura, A.}
    12886 }
    12887 @article{Jacobsen2001,
    12888   number = {2},
    12889   year = {2001},
    12890   title = {Soft X-ray spectroscopy from image sequences with sub-100nm spatial resolution},
    12891   pages = {173-184},
    12892   journal = {Journal of Microscopy},
    12893   volume = {197},
    12894   author = {Jacobsen, C. and Wirick, S. and Flynn, G. and Zimba, C.}
    12895 }
    12896 @article{Hammel1995,
    12897   year = {1995},
    12898   title = {Optimum rotationally symmetric detector configurations for phase-contrast imaging in scanning transmission electron microscopy},
    12899   pages = {403-415},
    12900   journal = {Ultramicroscopy},
    12901   volume = {58},
    12902   author = {Hammel, M. and Rose, H.}
    12903 }
    12904 @article{Braat2005,
    12905   number = {12},
    12906   year = {2005},
    12907   title = {Extended {Nijboer-Zernike} approach to aberration and birefringence retrieval in a high-numerical-aperture optical system},
    12908   pages = {2635-26550},
    12909   journal = {Journal of the Optical Society of America A},
    12910   volume = {22},
    12911   author = {Braat, J.J.M. and Dirksen, P. and Janssen, A.J.E.M. and Haver, S. van and Nes, S. van de}
    12912 }
    12913 @article{Swanson2009,
    12914   year = {2009},
    12915   title = {A review of the cold-field electron cathode},
    12916   pages = {63-100},
    12917   journal = {Advances in Imaging and Electron Physics},
    12918   volume = {159},
    12919   author = {Swanson, L.W. and Schwind, G.A.}
    12920 }
    12921 @article{Nakanishi2005,
    12922   year = {2005},
    12923   title = {An expanded approach to noise reduction from high-resolution STEM images based on the maximum entropy method},
    12924   note = {accepted},
    12925   journal = {Ultramicroscopy},
    12926   author = {Nakanishi, N. and Kotaka, Y. and Yamazaki, T.}
    12927 }
    12928 @article{Carragher2000,
    12929   year = {2000},
    12930   title = {Leginon: an automated system for acquisition of images from vitrecus ice specimens},
    12931   pages = {33-45},
    12932   journal = {Journal of Structural Biology},
    12933   volume = {132},
    12934   author = {Carragher, B. and Kisseberth, N. and Kriegman, D. and Milligan, R.A. and Potter, C.S. and Pulokas, J. and Reilein, A.}
    12935 }
    12936 @article{Finn2000,
    12937   number = {24},
    12938   year = {2000},
    12939   title = {Escherichia coli {RNA} polymerase core and holoenzyme structures},
    12940   pages = {6833-6844},
    12941   journal = {EMBO Journal},
    12942   volume = {19},
    12943   author = {Finn, R.D. and Orlova, E.V. and Gowen, B. and Buck, M. and Heel, M. van}
    12944 }
    12945 @article{Rubenstein2007,
    12946   year = {2007},
    12947   title = {Structural analysis of membrane protein complexes by single particle electron microscopy},
    12948   pages = {409-416},
    12949   journal = {Methods},
    12950   volume = {41},
    12951   author = {Rubenstein, J.L.}
    12952 }
    12953 @article{Wang2007,
    12954   year = {2007},
    12955   title = {Probing the electronic structure of ZnO nanowires by valence electron energy loss spectroscopy},
    12956   pages = {346-353},
    12957   journal = {Micron},
    12958   volume = {38},
    12959   author = {Wang, J. and Li, Q. and Egerton, R.F.}
    12960 }
    12961 @article{Wang2004,
    12962   year = {2004},
    12963   title = {Off-axis electron holography with a dual-lens imaging system andits usefulness in 2-D potential mapping of semiconductor devices},
    12964   pages = {63-72},
    12965   journal = {Ultramicroscopy},
    12966   volume = {101},
    12967   author = {Wang, Y.Y. and Kawasaki, M. and Bruley, J. and Gribelyuk, M. and Domenicucci, A. and Gaudiello, J.}
    12968 }
    12969 @article{Wang2008,
    12970   year = {2008},
    12971   title = {Nanomaterial electronic structure investigation by valence electron energy loss spectroscopy - An example of doped ZnO nanowires},
    12972   pages = {703-708},
    12973   journal = {Micron},
    12974   volume = {39},
    12975   author = {Wang, J. and Li, Q. and Ronning, C. and Stichtenoth, D. and Muller, S. and Tang, D.}
    12976 }
    12977 @article{Okayama2005,
    12978   number = {4},
    12979   year = {2005},
    12980   title = {Reference sample for the evaluation of {SEM} image resolution at a high magnification - nanometer-scale {Au} particles on an {HOPG} substrate},
    12981   pages = {345-350},
    12982   journal = {Journal of Electron Mircoscopy},
    12983   volume = {54},
    12984   author = {Okayama, S. and Haraichi, S. and Matsuhata, H.}
    12985 }
    12986 @book{Slayter1992,
    12987   year = {1992},
    12988   title = {Ligth and Electron Microscopy},
    12989   address = {Cambridge, United Kingdom},
    12990   publisher = {Cambridge University Press},
    12991   author = {Slayter,E.M. and Slayter, H.S.}
    12992 }
    12993 @article{Ortalan2009,
    12994   year = {2009},
    12995   title = {Application of image processing to STEM tomography of low-contrast materials},
    12996   pages = {67-81},
    12997   journal = {Ultramicroscopy},
    12998   volume = {110},
    12999   author = {Ortalan, V. and Herra, M. and Morgan, D.G. and Browning, N.D.}
    13000 }
    13001 @article{Lazar2010,
    13002   year = {2010},
    13003   title = {Imaging, Core-Loss, and Low-Loss Electron-Energy-Loss Spectroscopy Mapping in Aberration-Corrected STEM},
    13004   pages = {1-9},
    13005   journal = {Microscopy and Microanalysis},
    13006   volume = {16},
    13007   author = {Lazar, S. and Shao, Y. and Gunawan, L. and Nechache, R. and Pignolet, A. and Botton, G.A.}
    13008 }
    13009 @article{Takaoka2006,
    13010   year = {2006},
    13011   title = {Observations of unstained biological specimens using a low-energy, high-resolution STEM},
    13012   pages = {157-163},
    13013   journal = {Journal of Electron Microscopy},
    13014   volume = {55},
    13015   author = {Takaoka, A. and Hasegawa, T.}
    13016 }
    13017 @article{Batson2002,
    13018   year = {2002},
    13019   title = {Sub-{\AA}ngstrom resolution using aberration corrected electron optics},
    13020   pages = {617-622},
    13021   journal = {Nature},
    13022   volume = {418},
    13023   author = {Batson, P.E. and Dellby, N. and Krivanek, O.L.}
    13024 }
    13025 @article{Batson2006,
    13026   year = {2006},
    13027   title = {Characterizing probe performance in the aberration corrected {STEM}},
    13028   pages = {1104-1114},
    13029   journal = {Ultramicroscopy},
    13030   volume = {106},
    13031   author = {Batson, P.E.}
    13032 }
    13033 @article{Wang2007a,
    13034   year = {2007},
    13035   title = {Local electronic structure and luminescence properties of Er doped ZnO nanowires},
    13036   pages = {221917},
    13037   journal = {Applied Physics Letters},
    13038   volume = {89},
    13039   author = {Wang, J. and Zhou, M.J. and Hark, S.K. and Li, Q.}
    13040 }
    13041 @article{Eisebit2004,
    13042   year = {2004},
    13043   title = {Lensless imaging of magnetic nanostructures by {X-ray} spectro-holography},
    13044   pages = {885-888},
    13045   journal = {Nature},
    13046   volume = {432},
    13047   author = {Eisebit, S. and {J\"uning}, J. and Schlotter, W.F. and {L\"orgen}, M. and Hellwig, O. and Eberhardt, W. and {St\"ohr}, J.}
    13048 }
    13049 @phdthesis{Tuggle1984,
    13050   year = {1984},
    13051   title = {Emission Characteristics and Electron optical properties of the ZrO/W point cathode},
    13052   address = {Oregon State University},
    13053   school = {Oregon, USA},
    13054   author = {Tuggle, D.W.}
    13055 }
    13056 @article{Cowley1959a,
    13057   year = {1959},
    13058   title = {The Scattering of Electrons by Atoms and Crystals. {III.} {The} Single-Crytal Diffraction Patterns},
    13059   pages = {360-368},
    13060   journal = {Acta Crystallography},
    13061   volume = {12},
    13062   author = {Cowley, J.M. and Moodie, A.F.}
    13063 }
    13064 @article{Harrach2009,
    13065   year = {2009},
    13066   title = {Development of the 300-kV Vacuum Generator STEM (1985-1996)},
    13067   pages = {287-322},
    13068   journal = {Advances in Imaging and Electron Physics},
    13069   volume = {159},
    13070   author = {Harrach, H.S. von}
    13071 }
    13072 @article{Plaisier2007,
    13073   year = {2007},
    13074   title = {Cyclops: New modular software suite for cryo-EM},
    13075   pages = {19-27},
    13076   journal = {Journal of Strcutural Biology},
    13077   volume = {157},
    13078   author = {Plaisier, J.R. and Jiang, L. and Abrahams, J.P.}
    13079 }
    13080 @article{Benthem2006,
    13081   year = {2006},
    13082   title = {Three-dimensional {ADF} imaging of individual atoms by through-focal series scanning transmission electron microscopy},
    13083   pages = {1062-1068},
    13084   journal = {Ultramicroscopy},
    13085   volume = {106},
    13086   author = {Benthem, K. van and Lupini, A.R. and Oxley, M.P. and Findlay, S.D. and Alleen, L.J. and Pennycook, S.J.}
    13087 }
    13088 @misc{Rieger2009,
    13089   year = {2009},
    13090   title = {Method for determining the aberration coefficients of the aberration function of a particle-opticle lens},
    13091   howpublished = {EP1804272},
    13092   author = {Zande, M. van der and Kok, C. and Rieger, B.},
    13093   organization = {FEI Company}
    13094 }
    13095 @article{Fujita2005,
    13096   number = {5},
    13097   year = {2005},
    13098   title = {A new evaluation method of electron optical performance of high beam current probe forming systems},
    13099   pages = {413-427},
    13100   journal = {Journal of Electron Mircoscopy},
    13101   volume = {54},
    13102   author = {Fujita, S. and Shimoyama, H.}
    13103 }
    13104 @article{Heel1997,
    13105   year = {1997},
    13106   title = {Angular reconstitution in three-dimensional electron microscopy: historical and theoretical aspects},
    13107   pages = {195-210},
    13108   journal = {Scanning Microscopy},
    13109   volume = {11},
    13110   author = {Heel, M. van and Orlova, E.V. and Harauz, G. and Stark, H. and Dube, P. and Zemlin, F. and Schatz, M.}
    13111 }
    13112 @article{Sawada2010,
    13113   year = {2010},
    13114   title = {Higher-order aberration corrector for an image-forming system in a transmission electron microscope},
    13115   pages = {1-4},
    13116   journal = {Ultramicroscopy},
    13117   author = {Sawada, H. and Sasaki, T. and Hosokawa, F. and Yuasa, S. and Terao, M. and Kawazoe, M. and Nakamichi, T. and Kaneyama, T. and Kondo. Y. and Kimoto, K. and Suenaga, K.}
    13118 }
    13119 @article{Rau1999,
    13120   number = {12},
    13121   year = {1999},
    13122   title = {Two-Dimensional Mapping of the Electrostatic Potential in Transistors by Electron Holography},
    13123   pages = {2614-2617},
    13124   journal = {Physical Review Letters},
    13125   volume = {82},
    13126   author = {Rau, W.D. and Schwander, P. and Baumann, F.H. and Hoeppner, W. and Ourmazd, A.}
    13127 }
    13128 @article{Kishita2009,
    13129   year = {2009},
    13130   title = {Development of an analytical environmental TEM system and its application},
    13131   pages = {331-339},
    13132   journal = {Journal of Electron Microscopy},
    13133   volume = {58},
    13134   author = {Kishita, K. and Sakai, H. and Tanaka, H. and Saka, H. and Kuroda, K. and Sakamoto, M. and Watabe, A. and Kamnio, T.}
    13135 }
    13136 @article{Bartle2008,
    13137   year = {2008},
    13138   title = {Energy width reduction using an electrostatic Omega-monochromator},
    13139   pages = {479},
    13140   journal = {Physics Procedia},
    13141   volume = {1},
    13142   author = {Bartle, J. and Plies, E.}
    13143 }
    13144 @article{Armstrong2007,
    13145   year = {2007},
    13146   title = {Practical considerations for high spatial and temporal resolution dynamic transmission electron microscopy},
    13147   pages = {356-367},
    13148   journal = {Ultramicroscopy},
    13149   volume = {107},
    13150   author = {Armstrong, M. R. and Boyden, K. and Browning, N.D. and Campbell, G.H. and Colvin, J.D. and DeHope, W.J. and Frank, A.M. and hartemann, F. and Kim, J.S. and King, W.E. and LaGrange, T.B. and Pyke, B.J. and Reed, B.W. and Shuttleswoth, M. and Stuart, B.C. and Torralava, B.R.}
    13151 }
    13152 @article{Lichte1993,
    13153   year = {1993},
    13154   title = {Parameters for gih-resolution electron holography},
    13155   pages = {15-20},
    13156   journal = {Ultramicroscopy},
    13157   volume = {51},
    13158   author = {Lichte, H.}
    13159 }
    13160 @article{Blom2006,
    13161   year = {2006},
    13162   title = {Early Results from an Aberration-Corrected {JEOL 2200FS} {STEM/TEM} at {Oak} {Ridge} {National} {Laboratory}},
    13163   pages = {483-491},
    13164   journal = {Microscopy and Microanalysis},
    13165   volume = {12},
    13166   author = {Blom, D.A. and Allard, L.F. and Mishina, S. and O'Keefe, M.A.}
    13167 }
    13168 @article{Zach2009,
    13169   year = {2009},
    13170   title = {Chromatic correction: a revolution in electron microscopy?},
    13171   pages = {3699-3707},
    13172   journal = {Philosophical Transactions of the Royal Society},
    13173   volume = {367},
    13174   author = {Zach2009}
    13175 }
    13176 @article{Arslan2005,
    13177   year = {2005},
    13178   title = {Embedded nanostructures revealed in three dimensions},
    13179   pages = {2195-2198},
    13180   journal = {Sciences},
    13181   volume = {309},
    13182   author = {Arslan, I. and Yates, T.J.V. and Browning, N.D. and Midgley, P.A.}
    13183 }
    13184 @article{Urban2008,
    13185   year = {2008},
    13186   title = {Studying Atomic Structures by Aberration-Corrected Transmission Electron Microscopy},
    13187   pages = {506-510},
    13188   journal = {Science},
    13189   volume = {321},
    13190   author = {Urban, K.}
    13191 }
    13192 @article{Christenson1988,
    13193   year = {1988},
    13194   title = {Skew thoughts on parallelism},
    13195   pages = {113-132},
    13196   journal = {Ultramicroscopy},
    13197   volume = {26},
    13198   author = {Christenson, K.K. and Eades, J.A.}
    13199 }
    13200 @article{Lupini2003,
    13201   year = {2003},
    13202   title = {Localization in Elastic and Inelastic Scattering},
    13203   pages = {313-322},
    13204   journal = {Ultramicroscopy},
    13205   volume = {96},
    13206   author = {Lupini, A.R. and Pennycook, S.J.}
    13207 }
    13208 @article{Loane1992,
    13209   year = {1992},
    13210   title = {Incoherent imaging of zone axis crystals with {ADF STEM}},
    13211   pages = {121-138},
    13212   journal = {Ultramicroscopy},
    13213   volume = {40},
    13214   author = {Loane, R.F. and Xu, P. and Slicox, J.}
    13215 }
    13216 @phdthesis{Lupini2001,
    13217   year = {2001},
    13218   title = {Aberration correction in {STEM}},
    13219   note = {Copy Bernd Rieger},
    13220   address = {Cambridge, United Kingdom},
    13221   school = {University of Cambridge},
    13222   author = {Lupini, A.R.}
    13223 }
    13224 @article{Deptuch2007,
    13225   year = {2007},
    13226   title = {Direct electron imaging in electron microscopy with monolithic active pixel sensors},
    13227   pages = {674-684},
    13228   journal = {Ultramicroscopy},
    13229   volume = {107},
    13230   author = {Deptuch, G. and Besson, A. and Rehak, P. and Szelezniak, M. and Wall, J. and Winter, M. and Zhu, Y.}
    13231 }
    13232 @article{Yamasaki2005,
    13233   number = {2},
    13234   year = {2005},
    13235   title = {First experiments of selected area nano-diffraction from semiconductor interfaces using a spherical aberration corrected {TEM}},
    13236   pages = {123-126},
    13237   journal = {Journal of Electron Microscopy},
    13238   volume = {54},
    13239   author = {Yamasaki, J. and Sawada, H. and Tanaka, N.}
    13240 }
    13241 @article{Rodenburg2006,
    13242   year = {2006},
    13243   title = {Transmission microscopy without lenses for objects of unlimited size},
    13244   pages = {227-231},
    13245   journal = {Ultramicroscopy},
    13246   volume = {107},
    13247   author = {Rodenburg, J.M. and Hurst, A.C. and Cullis, A.G.}
    13248 }
    13249 @article{Stewart2004,
    13250   year = {2004},
    13251   title = {Noise bias in the refinement of structures deried from single particles},
    13252   pages = {67-84},
    13253   journal = {Ultramicroscopy},
    13254   volume = {102},
    13255   author = {Stewart, A. and Grigorieff, N.}
    13256 }
    13257 @inproceedings{CheynetXXXX,
    13258   title = {{VEELS} experiments using a monochromated {FEG-TEM}},
    13259   pages = {1-2},
    13260   author = {Cheynet, M.C. and Tichelaar, F.R. and Lazar, S. and Jullian, S. and Pantel, R.}
    13261 }
    13262 @article{Fan1996,
    13263   number = {3},
    13264   year = {1996},
    13265   title = {A new electron-optical mode for high contrast imaging and online stereo observation in {TEM}},
    13266   pages = {137-146},
    13267   journal = {Journal of Microscopy},
    13268   volume = {2},
    13269   author = {Fan, G.Y. and Young, S.J. and Deerinck, T. and Ellisman, M.H.}
    13270 }
    13271 @inproceedings{SaorzanoXXXX,
    13272   title = {Transfer function restoration in {3D} electron microscopy via iterative data refinement},
    13273   pages = {1-4},
    13274   author = {Sorzano, C.O.S. and {Fern\'andez}, J.J. and Marabini, R. and Herman, G.T. and Censor, Y. and Carazo, J.M.}
    13275 }
    13276 @article{Miao2002,
    13277   year = {2002},
    13278   title = {Atomic Resolution Three-Dimensional Electron Diffraction Microscopy},
    13279   journal = {Physical Review Letters},
    13280   volume = {89},
    13281   author = {Miao, J. and Ohsuna, T. and Terasaki, O. and Hodgson, K.O. and O'Keefe, M.A.}
    13282 }
    13283 @article{Lentzen2004,
    13284   year = {2004},
    13285   title = {The tuning of a {Zernike} phase plate with defocus and variable spherical aberration and its use in {HRTEM} imaging},
    13286   pages = {211-220},
    13287   journal = {Ultramicroscopy},
    13288   volume = {99},
    13289   author = {Lentzen, M.}
    13290 }
    13291 @article{Lentzen2002,
    13292   year = {2002},
    13293   title = {High-resolution imaging with an aberration-corrected transmission electron microscope},
    13294   pages = {233-242},
    13295   journal = {Ultramicroscopy},
    13296   volume = {92},
    13297   author = {Lentzen, M. and Jahnen, B. and Jia, C.L. and Thust, A. and Tillmann, K. and Urban, K.}
    13298 }
    13299 @article{Cowley1957,
    13300   year = {1957},
    13301   title = {The Scattering of Electrons by Atoms and Crystals. {I.} {A} New Theorectial Approach},
    13302   pages = {609-620},
    13303   journal = {Acta Crystallography},
    13304   volume = {10},
    13305   author = {Cowley, J.M. and Moodie, A.F.}
    13306 }
    13307 @article{Sander2005,
    13308   year = {2005},
    13309   title = {Advantages of CCD detectors for de novo three-dimensional structure determination in single-particle electron microscopy},
    13310   pages = {92-105},
    13311   journal = {Journal of Structural Biology},
    13312   volume = {151},
    13313   author = {Sander, B. and Golas, M.M. and Stark, H.}
    13314 }
    13315 @article{Alloyeau2009,
    13316   year = {2009},
    13317   title = {Atomic-resolution three-dimensional imaging of germanium self-interstitials near a surface: Aberration-corrected transmission electron microscopy},
    13318   pages = {014114},
    13319   journal = {Physical Review B},
    13320   volume = {80},
    13321   author = {Alloyeau, D. and Freitag, B. and Dag, S. and Wang, L.W. and Kisielowski, C.}
    13322 }
    13323 @article{Fujiyoshi1998,
    13324   year = {1998},
    13325   title = {The structural study of membranse proteins by electron crystallography},
    13326   pages = {25-80},
    13327   journal = {Adv. Biophysics},
    13328   volume = {35},
    13329   author = {Fujiyoshi, Y.}
    13330 }
    13331 @article{Cowley1959,
    13332   year = {1959},
    13333   title = {The Scattering of Electrons by Atoms and Crystals. {II.} {The} Effect of Finite Source Size},
    13334   pages = {353-360},
    13335   journal = {Acta Crystallography},
    13336   volume = {12},
    13337   author = {Cowley, J.M. and Moodie, A.F.}
    13338 }
    13339 @article{Baba2001,
    13340   year = {2001},
    13341   title = {An auto-tunning method for focusing and astigmatism correction in HAADF-STEM, based on the image contrast transfer function},
    13342   pages = {163-176},
    13343   journal = {Journal of Electron Micrsocopy},
    13344   volume = {50},
    13345   author = {Baba, N. Teryama, K. and Yoshimizu, T. and Ichise, N. and Tanaka, N.}
    13346 }
    13347 @article{Miyashita2004,
    13348   number = {6},
    13349   year = {2004},
    13350   title = {Direct observation of electrostatic microfields by four-electron-wave interference using two electron biprisms},
    13351   pages = {577-582},
    13352   journal = {Journal of Electron Microscopy},
    13353   volume = {53},
    13354   author = {Miyashita, K. and Yamamoto, K. and Hirayama, T. and Tanji, T.}
    13355 }
    13356 @article{Barthel2008,
    13357   year = {2008},
    13358   title = {Quantification of the Information Limit of Transmission Electron Microscopes},
    13359   pages = {200801},
    13360   journal = {Physical Review Letters},
    13361   volume = {101},
    13362   author = {Barthel, J. and Thust, A.}
    13363 }
    13364 @inproceedings{Barthel2005,
    13365   year = {2005},
    13366   title = {Ultra-Precise Measurement of Optical Aberrations for Sub-\AA ngstrom {HRTEM}},
    13367   booktitle = {{Dreil\"andertagung}, 28 August - 2 September, Davos, Zwitserland},
    13368   author = {Barthel, J. and Thust, A.}
    13369 }
    13370 @article{Winkler2007,
    13371   year = {2007},
    13372   title = {3D reconstruction and processing of volumetric data in cryo-electron tomography},
    13373   pages = {126-137},
    13374   journal = {Journal of Strcutural Biology},
    13375   volume = {157},
    13376   author = {Winkler, H.}
    13377 }
    13378 @article{Kohl1985,
    13379   year = {1985},
    13380   title = {Theory of image formation by inelastically scattered electrons in the electron microscope},
    13381   pages = {173-224},
    13382   journal = {Advances in Electronics and Electron Physics},
    13383   volume = {65},
    13384   author = {Kohl, H. and Rose, H.}
    13385 }
    13386 @article{Henderson1992,
    13387   year = {1992},
    13388   title = {Image contrast in high-resolution electron microscopy of biological macromlecules: {TMV} in ice},
    13389   pages = {1-18},
    13390   journal = {Ultramicroscopy},
    13391   volume = {46},
    13392   author = {Henderson, R.}
    13393 }
    13394 @article{Einspahr2006,
    13395   year = {2006},
    13396   title = {Prospects for {3D}, nanometer-resolution imaging by confocal {STEM}},
    13397   pages = {1041-1052},
    13398   journal = {Ultramicroscopy},
    13399   volume = {106},
    13400   author = {Einspahr, J.J. and Voyles, P.M.}
    13401 }
    13402 @article{Bohm2000,
    13403   year = {2000},
    13404   title = {Toward detecting and identifying macromolecules in a cellular context: Template matching applied to electron tomograms},
    13405   pages = {14245-14250},
    13406   journal = {Biophysical Journal},
    13407   volume = {97},
    13408   author = {{B\"ohm}, J. and Frangakis, A.S. and Hegerl, R. and Nickell, S. and Typke, D. and Baumeister, W.}
    13409 }
    13410 @article{Zhou1996,
    13411   number = {1},
    13412   year = {1996},
    13413   title = {{CTF} Determination of Images of Ice-Embedded Single Particles Using from Cryoelectron Micrographs to Subnanometer Resolution},
    13414   pages = {216-22},
    13415   journal = {Journal of Strcutural Biology},
    13416   volume = {116},
    13417   author = {Zhou, Z.H. and Hardt, S. and Wang, B. and Sherman, M.B. and Jakana, J. and Chiu, W.}
    13418 }
    13419 @article{Mitome2009,
    13420   year = {2009},
    13421   title = {Quantitativeness of phase measurement by transport of intensity equation},
    13422   pages = {1-9},
    13423   journal = {Journal of electron microscopy},
    13424   author = {Mitome, M. and Ishizuka, K. and Bando, Y.}
    13425 }
    13426 @article{Schiske1956,
    13427   year = {1956},
    13428   title = {Die untere Grenze des Farbfehlers magnetischer Linsen bei vorgeschriebener Maximalfeldstaerke},
    13429   pages = {502-503},
    13430   journal = {Optik},
    13431   volume = {13},
    13432   author = {Schiske, P.}
    13433 }
    13434 @article{Edgcombe1999,
    13435   year = {1999},
    13436   title = {Robust optimization for magnetic lens design},
    13437   pages = {306-309},
    13438   journal = {Nuclear Instruments and Methods in Physics Research A},
    13439   volume = {427},
    13440   author = {Edgcombe, C.J. and Lupini, A.R. and Taylor, J.H.}
    13441 }
    13442 @article{Abajo2010,
    13443   year = {2010},
    13444   title = {Optical excitations in electron microscopy},
    13445   pages = {209-275},
    13446   journal = {REVIEWS OF MODERN PHYSICS},
    13447   volume = {82},
    13448   author = {Abajo, F.J. Garcia de}
    13449 }
    13450 @article{Chang2006,
    13451   year = {2006},
    13452   title = {On the importance of fifth-order spherical aberration for a fully corrected electron microscope},
    13453   pages = {in press},
    13454   journal = {Ultramicroscopy},
    13455   author = {Chang, L.Y. and Kirkland, A.I. and Tichmarsh, J.M.}
    13456 }
    13457 @article{Treacy2007,
    13458   year = {2007},
    13459   title = {When structural noise is the signal: Speckle statistics in fluctuation electron microscopy},
    13460   pages = {166-171},
    13461   journal = {Ultramicroscopy},
    13462   volume = {107},
    13463   author = {Treacy, M.M.J.}
    13464 }
    13465 @article{Yi2010,
    13466   year = {2010},
    13467   title = {Flexible formation of coherent probes on an aberrationcorrected STEM with three condensers},
    13468   pages = {1-7},
    13469   journal = {Journal of Electron Microscopy},
    13470   author = {Yi, F. and Tiemeijer, P. and Voyles, P.M.}
    13471 }
    13472 @article{Erni2005,
    13473   year = {2005},
    13474   title = {Analysis of extraterrestrial particles using monochromated electron energy-loss spectroscopy},
    13475   pages = {369-379},
    13476   journal = {Micron},
    13477   volume = {36},
    13478   author = {Erni, R. and Browning, N.D. and Dia, Z.R. and Bradley, J.P.}
    13479 }
    13480 @article{Erni2006,
    13481   year = {2006},
    13482   title = {Atomic Scale Analysis of Planar Defects in Polycrystalline Diamond},
    13483   pages = {492-497},
    13484   journal = {Microscopy and Microanalysis},
    13485   volume = {12},
    13486   author = {Erni, R. and Freitag, B. and Hartel, P. and {M\"uller}, H. and Tiemeijer, P. and Stam, M. van der and Stekelenburg, M. and Hubert, D. and Specht, P. and Garibay-Febles, V.}
    13487 }
    13488 @article{Erni2007,
    13489   year = {2007},
    13490   title = {Quantification of the size-dependent energy gap of individual {CdSe} quantum dots by valence electron energy-loss spectroscopy},
    13491   pages = {267-273},
    13492   journal = {Ultramicroscopy},
    13493   volume = {107},
    13494   author = {Erni, R. and Browning, N.D.}
    13495 }
    13496 @article{Peng2004,
    13497   year = {2004},
    13498   title = {{HAADF-STEM} Imaging With Sub-{\AA}ngstrom Probes, a full Bloch wave analysis},
    13499   pages = {257},
    13500   journal = {Journal of Electron Microscopy},
    13501   volume = {53},
    13502   author = {Peng, Y. and Nellist, P.D. and Pennycook, S.J.}
    13503 }
    13504 @article{Erni2008,
    13505   year = {2008},
    13506   title = {Prospects for analyzing the electronic properties in nanoscale systems by {VEELS}},
    13507   pages = {270-276},
    13508   journal = {Ultramicroscopy},
    13509   volume = {108},
    13510   author = {Erni, R. and Lazar, S. and Browning, N.D.}
    13511 }
    13512 @article{Erni2009,
    13513   year = {2009},
    13514   title = {Atomic-resolution Imaging with sub-50-pm Electron Probe},
    13515   pages = {096101},
    13516   journal = {Physical Review Letters},
    13517   volume = {102},
    13518   author = {Erni, R. and Rossell, M.D. and Kisielowski, C. and Dahmen, U.}
    13519 }
    13520 @article{Malac2007,
    13521   year = {2007},
    13522   title = {Imaging of radiation-sensitive samples in transmission electron microscopes equipped with Zernike phase plates},
    13523   pages = {126-140},
    13524   journal = {Ultramicroscopy},
    13525   volume = {108},
    13526   author = {Malac, M. and Beleggia, M. and Egerton, R. and Zhu, Y.}
    13527 }
    13528 @article{Bron1999,
    13529   year = {1999},
    13530   title = {The 9 {\AA} projection structure of cytochrome $b_6f$ complex determined by electron crystallography},
    13531   pages = {117-126},
    13532   journal = {Journal of Molecular Biology},
    13533   volume = {287},
    13534   author = {Bron, P. and {Lacap\'ere}, J.-J. and Breyton, C. and Mosser, G.}
    13535 }
    13536 @inproceedings{Kothleitner2003a,
    13537   year = {2003},
    13538   title = {First Applications of Electron Energy-Loss Spectroscopy with High Energy Resolution},
    13539   booktitle = {Mat. Res. Soc. Symp. Proc.},
    13540   pages = {27-32},
    13541   volume = {738},
    13542   author = {Kothleitner, G. and Mitterbauer, C. and Grogger, W. and Zandbergen, H. and Tiemeijer, P.C. and Freitag, B. and Barfels, M. and Hofer, F.}
    13543 }
    13544 @article{Saxton1998,
    13545   year = {1998},
    13546   title = {Quantitative comparision of images and transforms},
    13547   pages = {52-60},
    13548   journal = {Journal of Microscopy},
    13549   volume = {1-2},
    13550   author = {Saxton, W.O.}
    13551 }
    13552 @article{Kothleitner1998,
    13553   number = {5},
    13554   year = {1998},
    13555   title = {Optimization of the Signal to Noise Ratio in {EFTEM} Elemental Maps with Regard to Different Eonization Edge Types},
    13556   pages = {349-357},
    13557   journal = {Micron},
    13558   volume = {29},
    13559   author = {Kothleitner, G. and Hofer, F.}
    13560 }
    13561 @article{Dwyer2007,
    13562   year = {2007},
    13563   title = {Electron nanodiffraction using sharply focused parallel probes},
    13564   pages = {151104},
    13565   journal = {Applied Physics Letters},
    13566   volume = {90},
    13567   author = {Dwyer, C. and Kirkland, A.I. and Hartel, P. and {M\"uller}, H. and Haider, M.}
    13568 }
    13569 @article{Dwyer2008,
    13570   year = {2008},
    13571   title = {Method to measure spatial coherence of subangstrom electron beams},
    13572   pages = {021115},
    13573   journal = {Applied Physics Letters},
    13574   volume = {93},
    13575   author = {Dwyer, C. and Erni, R. and Etheridge, J.}
    13576 }
    13577 @book{Reisner,
    13578   edition = {73},
    13579   year = {1989},
    13580   title = {An early history of the electron microsope in the united states},
    13581   note = {sold out, reprint 2006},
    13582   publisher = {Adavances in electronics and electron physics},
    13583   author = {Reisner, J.H.}
    13584 }
    13585 @article{Bottcher1995,
    13586   year = {1995},
    13587   title = {Electron cryo-micrsocopy of graphite in amorphous ice},
    13588   pages = {417-424},
    13589   journal = {Ultramicroscopy},
    13590   volume = {58},
    13591   author = {{B\"ottcher}, B.}
    13592 }
    13593 @article{Coene1992,
    13594   number = {26},
    13595   year = {1992},
    13596   title = {Phase retrieval through focus variation for ultra-resolution in field-emission transmission electron microscopy},
    13597   pages = {3743-3749},
    13598   journal = {Physical Review Letters},
    13599   volume = {69},
    13600   author = {Coene, W.M.J. and Jansen, G. and Beeck, M. op de and Dyck, D. van}
    13601 }
    13602 @article{Atsuzawa2009,
    13603   year = {2009},
    13604   title = {High-contrast imaging of plastic-embedded tissues by phase contrast electron microscopy},
    13605   pages = {35-45},
    13606   journal = {Journal of Electron Microscopy},
    13607   volume = {58},
    13608   author = {Atusuzawa, K. and et al.}
    13609 }
    13610 @article{Bailey2004,
    13611   year = {2004},
    13612   title = {Performance Evaluation of a Transmission Scintillator-Based Lens-Coupled 4K CCD Camera for Use in Low-Dose Electron Cryo-Microscopy},
    13613   pages = {S2},
    13614   journal = {Mircoscopy Mircoanal},
    13615   volume = {10},
    13616   author = {Bailey, B. and Agard, D.A. and Sedat, J.W. and Barfels, M. and Chao, H. and Mooney, P.E.}
    13617 }
    13618 @article{Muto2006,
    13619   number = {4},
    13620   year = {2006},
    13621   title = {Spectral restoration and energy resolution improvement of electron energy-loss spectra by Pixon reconstruction: {I. Principle} and test examples},
    13622   pages = {215-223},
    13623   journal = {Journal of Electron Microscopy},
    13624   volume = {55},
    13625   author = {Muto, S. and Pueter, R.C. and Tatsumi, K.}
    13626 }
    13627 @article{Alem2009,
    13628   year = {2009},
    13629   title = {Atomically thin hexagonal boron nitride probed by ultrahigh-resolution transmission electron microscopy},
    13630   pages = {155425},
    13631   journal = {Physics Review B},
    13632   volume = {80},
    13633   author = {Alem, N. and Erni, R. and Kisielowski, C. and Rosell, M.D. and Gannett, W. and Zettl, A.}
    13634 }
    13635 @article{Meyer2008a,
    13636   year = {2008},
    13637   title = {Direct Imaging of Lattice Atoms and Topological Defects in Graphene Membranes},
    13638   pages = {3582-3586},
    13639   journal = {Nano Letters},
    13640   volume = {8},
    13641   author = {Meyer, J.C. and Kisielowski, C. and Erni, R. and Rossell, M.D. and Crommie, M.F. and Zettl, A.}
    13642 }
    13643 @article{Ishizuka1980,
    13644   year = {1980},
    13645   title = {Contrast transfer of crystal images in {TEM}},
    13646   pages = {55-65},
    13647   journal = {Ultramicroscopy},
    13648   volume = {5},
    13649   author = {Ishizuka, K.}
    13650 }
    13651 @article{Jia2008,
    13652   year = {2008},
    13653   title = {Atomic-scale study of electric dipoles near charged and uncharged domain walls in ferroelectric films},
    13654   pages = {57-61},
    13655   journal = {Nature},
    13656   volume = {7},
    13657   author = {Jia, C.-L. and Mi, S.-B. and Urban, K. and Verjoiu, I. and Alexe, M. and Hesse, D.}
    13658 }
    13659 @article{Gonen2004,
    13660   year = {2004},
    13661   title = {Aquaporin-O membrane junctions reveal the structure of a closed water pore},
    13662   pages = {193-196},
    13663   journal = {Nature},
    13664   volume = {429},
    13665   author = {Gonen, T. and Sliz, P. and Kistler, J. and Cheng, Y. and Walz, T.}
    13666 }
    13667 @article{Jia2004,
    13668   year = {2004},
    13669   title = {High-Resolution Transmission Electron Microscopy Using Negative Spherical Aberration},
    13670   pages = {174-184},
    13671   journal = {Microscopy and Mircoanalysis},
    13672   volume = {10},
    13673   author = {Jia, C.-L. and Lentzen, M. and Urban, K.}
    13674 }
    13675 @article{Ishitani2002a,
    13676   number = {4},
    13677   year = {2003},
    13678   title = {A Method for Personal Expertise-Independent Evaluation of Image Resolution in Scanning Electron Microscopy},
    13679   pages = {191-203},
    13680   journal = {Scanning},
    13681   volume = {24},
    13682   author = {Ishitani, T. and Sato, M.}
    13683 }
    13684 @article{Oho2001,
    13685   number = {5},
    13686   year = {2001},
    13687   title = {Strategies for Optimum Use of Superposition Diffractogram in Scanning Electron Microscopy},
    13688   pages = {351-356},
    13689   journal = {Scanning},
    13690   volume = {23},
    13691   author = {Oho, E. and Toyomura, K.}
    13692 }
    13693 @article{Kazemian2006,
    13694   year = {2006},
    13695   title = {Quantitative secondary electron energy filtering in a scanning electron microscope and its applications},
    13696   pages = {140-150},
    13697   journal = {Ultramicroscopy},
    13698   volume = {107},
    13699   author = {Kazemian, P. and Mentink, S.A.M. and Rodenburg, C. and Humphreys, C.J.}
    13700 }
    13701 @article{Rau1996,
    13702   year = {1996},
    13703   title = {An Annular Toroidal Backscattered Electron Energy Analyser for Use in Scanning Electron Microscopy},
    13704   pages = {556-561},
    13705   journal = {Scanning},
    13706   volume = {18},
    13707   author = {Rau, E.I. and Robinson, V.N.E.}
    13708 }
    13709 @article{Bronsgeest2007,
    13710   number = {6},
    13711   year = {2007},
    13712   title = {Extracting the Boersch effect contribution from experimental energy spread measurements for Schottky electron emitters},
    13713   pages = {2049-254},
    13714   journal = {Journal of Vaccuum Science Technology B},
    13715   volume = {25},
    13716   author = {Bronsgeest, M.S. and Barth, J.E. and Schwind, G.A. and Swanson, L.W. and Kruit, P.}
    13717 }
    13718 @article{Nellist1999,
    13719   year = {1999},
    13720   title = {Incoherent imaging using dynamically scattered coherent electrons},
    13721   pages = {111-124},
    13722   journal = {Ultramicroscopy},
    13723   volume = {78},
    13724   author = {Nellist, P.D. and Pennycook, S.J.}
    13725 }
    13726 @article{Nellist1998,
    13727   number = {19},
    13728   year = {1998},
    13729   title = {Subangstrom Resolution by Underfocused Incoherent Transmission Electron Microscopy},
    13730   pages = {4156-4159},
    13731   journal = {Physical Review Letters},
    13732   volume = {81},
    13733   author = {Nellist, P.D. and Pennycook, S.J.}
    13734 }
    13735 @article{Yonekura2006,
    13736   year = {2006},
    13737   title = {Electron energy filtering significantly improves amplitude contrast of frozen-hydrated protein at 300 kV},
    13738   pages = {524-536},
    13739   journal = {Journal of Structural Biology},
    13740   volume = {156},
    13741   author = {Yonekura, K. and Braunfeld, M.B. and Mari-Yonekura, S. and Agard, D.A.}
    13742 }
    13743 @article{Park2009,
    13744   year = {2009},
    13745   title = {4D ultra fast electron microscopy: Imaging of atomic motions, acoustic resonances, and moire fringe dynamics},
    13746   pages = {7-19},
    13747   journal = {Ultramicroscopy},
    13748   volume = {110},
    13749   author = {Park, H.S. and Baskin, J.S. and Barwick, B. and Kwon, O.H. and Zewail, A.H.}
    13750 }
    13751 @article{Bahn2008,
    13752   number = {6},
    13753   year = {2008},
    13754   title = {Range of validity of field emission equations},
    13755   pages = {2080-2084},
    13756   journal = {Journal of Vaccuum Science Technology B},
    13757   volume = {26},
    13758   author = {Bahn, A.S. and J.E. and Schwind, G.A. and Swanson}
    13759 }
    13760 @article{Beck2004,
    13761   year = {2004},
    13762   title = {Nuclear Pore Complex Structure and Dynamics Revealed by Cryoelectron Tomography},
    13763   pages = {1387-1390},
    13764   journal = {Science},
    13765   volume = {306},
    13766   author = {Beck, M. and {F\"orster}, F. and Ecke, M. and Plitzko, J.M. and Melchior, F. and Gerisch, G. and Baumeister, W. and Medalia, O.}
    13767 }
    13768 @article{Ban2000,
    13769   year = {2000},
    13770   title = {The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 {\AA} Resolution},
    13771   pages = {905-920},
    13772   journal = {Science},
    13773   volume = {289},
    13774   author = {Ban, N. and Nissen, P. and Hansen, J. and Moore, P.B. and Steitz, T.A.}
    13775 }
    13776 @article{Havelka1993,
    13777   year = {1993},
    13778   title = {Projection structure of Halorhodopsin from Halobacterium halobium at 6 {\AA} resolution obtrained by electron cryo-microscopy},
    13779   pages = {837-846},
    13780   journal = {Journal of Molecular Biology},
    13781   volume = {234},
    13782   author = {Havelka, W. A. and Henderson, R. and Heymann, J.A.W. and Oesterhelt, D.}
    13783 }
    13784 @article{Havelka1995,
    13785   year = {1995},
    13786   title = {Three-dimensional structure of halorhodopsin at 7 {\AA} resolution},
    13787   pages = {726-738},
    13788   journal = {Journal of Molecular Biology},
    13789   volume = {247},
    13790   author = {Havelka, W.A. and Henderson, R. and Oesterhelt, D.}
    13791 }
    13792 @article{Ruprecht2001,
    13793   year = {2001},
    13794   title = {Determining the structure of biological macromolecules by transmission electron microscopy, single particle analysis and 3D reconstruction},
    13795   pages = {121-164},
    13796   journal = {Biophysics and Molecular Biology},
    13797   volume = {75},
    13798   author = {Ruprecht, J. and Nield, J.}
    13799 }
    13800 @article{Pennycook2000,
    13801   year = {2000},
    13802   title = {Z-Contrast Imaging in an Aberration-Corrected Scanning Transmission Electron Microscope},
    13803   pages = {343},
    13804   journal = {Microscopy and Microanalysis},
    13805   volume = {6},
    13806   author = {Pennycook, S.J. and Rafferty, B. and Nellist, P.D.}
    13807 }
    13808 @inproceedings{Pennycook2003,
    13809   year = {2003},
    13810   title = {Quantum Mechanical Resolution Limits to Imaging and Spectroscopy in the Transmission Electron Microscope},
    13811   booktitle = {From the Atomic to the Nano Scale},
    13812   pages = {126},
    13813   editor = {McGuire, J.},
    13814   publisher = {Old Dominion Universtity},
    13815   author = {Pennycook, S.J. and Lupini, A.R. and Varela, M. and Borisevich, A. and Peng, Y. and Nellist, P.D.}
    13816 }
    13817 @article{Pennycook2009,
    13818   year = {2009},
    13819   title = {Aberration corrected scanning transmission electron microscopy: from atomic imaging and analysis to solving energy problems},
    13820   pages = {3709-3733},
    13821   journal = {Philosophical Transactions of the Royal Society},
    13822   volume = {367},
    13823   author = {Zach2009}
    13824 }
    13825 @article{Pennycook1990,
    13826   year = {1990},
    13827   title = {High-Resolution Incoherent Imaging of Crystals},
    13828   pages = {938},
    13829   journal = {Physical Review Letters},
    13830   volume = {64},
    13831   author = {Pennycook, S.J. and Jesson, D.E.}
    13832 }
    13833 @article{Muto2006a,
    13834   number = {4},
    13835   year = {2006},
    13836   title = {Spectral restoration and energy resolution improvement of electron energy-loss spectra by Pixon reconstruction: {II. Application} to practical {ELNES} analysis of low {SNR}},
    13837   pages = {225-230},
    13838   journal = {Journal of Electron Microscopy},
    13839   volume = {55},
    13840   author = {Muto, S. and Tatsumi, K. and Puetter, R.C. and Yosida, T. and Yamamoto, Y. and Sasano, Y.}
    13841 }
    13842 @article{Kujawa1990,
    13843   year = {1990},
    13844   title = {Second-rank aberrations of a magnetic imaging energy filter: measurement and correction},
    13845   pages = {39-46},
    13846   journal = {Optik},
    13847   volume = {86},
    13848   author = {Kujawa, S. and Krahl, D. and Niedrig, H. and Zeitler, E.}
    13849 }
    13850 @article{Kujawa1992,
    13851   year = {1992},
    13852   title = {Performance of a low-noise CCD camera adapted to a transmission electron microscope},
    13853   pages = {395-403},
    13854   journal = {Ultramicrosopy},
    13855   volume = {46},
    13856   author = {Kujawa, S. and Krahl, D.}
    13857 }
    13858 @article{Lugg2010,
    13859   year = {2010},
    13860   title = {Energy-filtered transmission electron microscopy based on inner-shell ionization},
    13861   journal = {Ultramicroscopy},
    13862   author = {Lugg, N.R. and Freitag, B. and Findlay, S.D. and Allen, L.J..}
    13863 }
    13864 @article{Avoort2005,
    13865   number = {12},
    13866   year = {2005},
    13867   title = {Aberration retrieval from the intensity point-spread function in the focal region using the extended {Nijboer-Zernike} approach},
    13868   pages = {1695-1728},
    13869   journal = {Journal of Modern Optics},
    13870   volume = {52},
    13871   author = {Avoort, C. van der and Braat, J.J.M. and Dirksen, P. and Janssen, A.J.E.M.}
    13872 }
    13873 @article{Eastham2009,
    13874   year = {2009},
    13875   title = {A design for a subminiature, low energy scanning electron microscope with atomic resolution},
    13876   pages = {014702},
    13877   journal = {Journal of Appplied Physics},
    13878   volume = {105},
    13879   author = {Eastham, D.A. and Edmondson, P. and Greene, S. and Donnelly, S. and Olsson, E. and Svensson, K. and Bleloch, A.}
    13880 }
    13881 @article{Schonhense2002,
    13882   number = {6},
    13883   year = {2002},
    13884   title = {Correction of chromatic and spherical aberration in electron microscopy utilizing the time structure of pulsed excitation sources},
    13885   pages = {2526-2534},
    13886   journal = {Journal of Vacuum Science Technology B},
    13887   volume = {20},
    13888   author = {{Sch\"onhense}, G. and Spiecker, H.}
    13889 }
    13890 @article{Sawada2005,
    13891   number = {2},
    13892   year = {2005},
    13893   title = {Experimental evaluation of a spherical aberration-corrected {TEM} and {STEM}},
    13894   pages = {119-121},
    13895   journal = {Journal of Electron Microscopy},
    13896   volume = {54},
    13897   author = {Sawada, H. and Tomita, T. and Naruse, M. and Honda, T. and Hambridge, P. and Hartel, P. and Haider, M. and Hetherington, C. and Doole, R. and Kirkland, A. and Hutchison, J. and Titchmarsh, J. and Cockayne, D.}
    13898 }
    13899 @article{Hartel1996,
    13900   year = {1996},
    13901   title = {Conditions and reasons for incoherent imaging in {STEM}},
    13902   pages = {93-114},
    13903   journal = {Ultramicroscopy},
    13904   volume = {63},
    13905   author = {Hartel, P. and Rose, H. and Dinges, C.}
    13906 }
    13907 @article{Egelman2007,
    13908   year = {2007},
    13909   title = {The iterative helical real space reconstruction method: Surmounting the problems posed by real polymers},
    13910   pages = {83-94},
    13911   journal = {Journal of Strcutural Biology},
    13912   volume = {157},
    13913   author = {Egelman, E.H.}
    13914 }
    13915 @article{Sawada2009,
    13916   year = {2009},
    13917   title = {Correction of higher order geometrical aberration by triple 3-fold astigmatism field},
    13918   pages = {1-7},
    13919   journal = {Journal of electron microscopy},
    13920   author = {Sawada, H. and Sasaki, T. and Hosokawa, F. and Yuasa, S. and Terao, M. and Kawazoe, M .and Nakamichi, T. and Kaneyama, T. and Kondo, Y. and Kimoto, K. and Suenada, K.}
    13921 }
    13922 @article{Sawada2008,
    13923   year = {2008},
    13924   title = {Measurement method of aberration from Ronchigram by autocorrelation function},
    13925   pages = {1467-1475},
    13926   journal = {Ultramicroscopy},
    13927   volume = {108},
    13928   author = {Sawada, H. and Sannomiya, T. and Hosokawa, F. and Nakamichi, T. and Kaneyama, T. and Tomita, T. and Kondo, Y. and Tanaka, T. and Oshima, Y. and Tanishiro, Y. and Takayanagi, K.}
    13929 }
    13930 @article{Erni2005a,
    13931   year = {2005},
    13932   title = {Valence electron energy-loss spectroscopy in monochromated scanning transmission electron microscopy},
    13933   pages = {176-192},
    13934   journal = {Ultramicroscopy},
    13935   volume = {104},
    13936   author = {Erni, R. and Browning, N.D.}
    13937 }
    13938 @article{Gilbert1972,
    13939   number = {1},
    13940   year = {1972},
    13941   title = {Iterative Methods for the three-dimensional reconstruction of a object from projections},
    13942   pages = {105-117},
    13943   journal = {Journal of Theoretical Biology},
    13944   volume = {36},
    13945   author = {Gilbert, P.}
    13946 }
    13947 @article{Shiue2009,
    13948   year = {2009},
    13949   title = {Phase TEM for biological imaging utilizing a Boersch electrostatic phase plate: theory and practice},
    13950   pages = {135-145},
    13951   journal = {Journal of Electron Microscopy},
    13952   volume = {58},
    13953   author = {Shiue, J. and et al.}
    13954 }
    13955 @techreport{Zande2005,
    13956   number = {PR-TN-2005/00002},
    13957   year = {2005},
    13958   title = {Local magnification in Ronchigrams (Aberration retrieval in {STEM})},
    13959   type = {Technical Note},
    13960   address = { Eindhoven, The Netherlands},
    13961   institution = {Philips Research},
    13962   author = {Zande, M.J. van der and Kok, C.}
    13963 }
    13964 @article{Rafferty1998,
    13965   number = {16},
    13966   year = {1998},
    13967   title = {Direct and indirect transitions in the region of the band gap using electron-energy-loss spectroscopy},
    13968   pages = {10326-10337},
    13969   journal = {Physical Review B},
    13970   volume = {58},
    13971   author = {Rafferty, B. and Brown, L.M.}
    13972 }
    13973 @article{Lichte1986,
    13974   year = {1986},
    13975   title = {Electron Holography approaching atomic resolution},
    13976   pages = {293-304},
    13977   journal = {Ultramicroscopy},
    13978   volume = {20},
    13979   author = {Lichte, H.}
    13980 }
    13981 @article{Bosman2009,
    13982   year = {2009},
    13983   title = {Nanoscale band gap spectroscopy on ZnO and GaN-based compounds with a monochromated electron microscope},
    13984   pages = {101110},
    13985   journal = {Applied Physics Letters},
    13986   volume = {95},
    13987   author = {Bosman, M. and Tang, L.J. and Ye, J.D. and Zhang, Y. and Keast, V.J.}
    13988 }
    13989 @article{Conway1999,
    13990   year = {1999},
    13991   title = {Methods for Reconstructing Density Maps of Single Particles from Cryoelectron Micrographs to Subnanometer Resolution},
    13992   pages = {106-118},
    13993   journal = {Journal of Strcutural Biology},
    13994   volume = {128},
    13995   author = {Conway, J.F. and Steven, A.C.}
    13996 }
    13997 @article{Muller2008a,
    13998   year = {2008},
    13999   title = {Aberration-corrected optics: from an idea to a device},
    14000   pages = {167-178},
    14001   journal = {Physcis Procedia},
    14002   volume = {1},
    14003   author = {Muller, H. and Uhlemann, S. and Hartel, P. and Haider, M.}
    14004 }
    14005 @article{Chiu1977,
    14006   year = {1977},
    14007   title = {Factors affecting high resolution fixed-beam transmission electron microscopy},
    14008   pages = {207-217},
    14009   journal = {Ultramicroscopy},
    14010   volume = {2},
    14011   author = {Chiu, W. and Glaeser, R.M.}
    14012 }
    14013 @article{HitatchiSEM2007,
    14014   number = {3},
    14015   year = {2007},
    14016   title = {{STEM} Imaging of Lattic Fringes and beyond in a {UHR} In-Lens Field-Emission {SEM}},
    14017   pages = {12-16},
    14018   journal = {Microscopy Today},
    14019   author = {Ngo, V. van and Hernandez, M. and Roth, B. and Joy, D.C.}
    14020 }
    14021 @article{Schatz1997,
    14022   year = {1997},
    14023   title = {Angular reconstitution in three-dimensional electron microscopy: practical and technical aspects},
    14024   pages = {179-193},
    14025   journal = {Scanning Microscopy},
    14026   volume = {11},
    14027   author = {Schatz, M. and Orlova, E.V. and Harauz, G. and Stark, H. and Dube, P. and Zemlin, F. and Heel, M. van}
    14028 }
    14029 @article{Isabell2009,
    14030   year = {2009},
    14031   title = {Development of a 200kV Atomic resolution Analytical Electron Microscope},
    14032   pages = {8-10},
    14033   journal = {Microscopy Today},
    14034   author = {Isabell, T. and Brink, J. and Kawasaki, M. and Armbruster, B. and Ishikawa, I. and Okunishi, E. and Sawada, H. and Okura, Y. and Yamazaki, K. and Ishikawa, T. and Kawazu, M. and Hori, M. and Terao, M. and Kanno, M. and Tanba, S. and Kondo, Y.}
    14035 }
    14036 @article{Penczek2002a,
    14037   year = {2002},
    14038   title = {Resolution Measures in Single Particle Analysis},
    14039   author = {Penczek, P.A.}
    14040 }
    14041 @article{Majorovits2007,
    14042   year = {2007},
    14043   title = {Optimizing phase contrast in transmission electron microscopy with an electrostatic (Boersch) phase plate},
    14044   pages = {213-226},
    14045   journal = {Ultramicroscopy},
    14046   volume = {107},
    14047   author = {Majorovits, E. and Barton, B. and {Schulthei\ss}, K. and Perez-Willard, F. and Gerthsen, D. and {Schr\"oder}, R.R.}
    14048 }
    14049 @article{Baumeister2004,
    14050   year = {2004},
    14051   title = {Mapping molecular landscapes inside cells},
    14052   pages = {865-872},
    14053   journal = {Biological Chemistry},
    14054   volume = {385},
    14055   author = {Baumeister, W.}
    14056 }
    14057 @article{Harrach1995,
    14058   year = {1995},
    14059   title = {Instrumental factors in high-resolution {FEG STEM}},
    14060   pages = {1-5},
    14061   journal = {Ultramicroscopy},
    14062   volume = {58},
    14063   author = {Harrach, H.S. von}
    14064 }
    14065 @article{Baxter2007,
    14066   year = {2007},
    14067   title = {SPIRE: The SPIDER Reconstruction Engine},
    14068   pages = {56-63},
    14069   journal = {Journal of Strcutural Biology},
    14070   volume = {157},
    14071   author = {Baxter, W.T. and Leith, A. and Frank, J.}
    14072 }
    14073 @article{Rafferty2001,
    14074   number = {3},
    14075   year = {2001},
    14076   title = {On the origin of transverse incoherence in {Z-}constrast {STEM}},
    14077   pages = {227-233},
    14078   journal = {Journal of Electron Microscopy},
    14079   volume = {50},
    14080   author = {Rafferty, B. and Nellist, P.D. and Pennycook, S.J.}
    14081 }
    14082 @article{Drummy2004,
    14083   year = {2004},
    14084   title = {Low-voltage electron microscopy of polymer and organic molecular thin films},
    14085   pages = {247-256},
    14086   journal = {Ultramicroscopy},
    14087   volume = {99},
    14088   author = {Drummy, L.F. and Yang, J. and Martin, D.C.}
    14089 }
    14090 @article{Jiang2006,
    14091   year = {2006},
    14092   title = {Experimental and theoretical improvements on understanding of the {O K-edge} of {TeO}$_2$},
    14093   pages = {123-129},
    14094   journal = {Ultramicroscopy},
    14095   volume = {106},
    14096   author = {Jiang, N. and Jiang, B. and Erni, R. and Browning, N.D. and Spence, J.C.H.}
    14097 }
    14098 @article{Jiang2005,
    14099   year = {2003},
    14100   title = {Applications of a bilateral denoising filter in biological electron microscopy},
    14101   pages = {114-122},
    14102   journal = {Journal of Structural Biology},
    14103   volume = {144},
    14104   author = {Jiang, W. and Baker, M.L. and Wu, Q. and Bajaj, C. and Chiu, W.}
    14105 }
    14106 @article{Jiang2008,
    14107   year = {2008},
    14108   title = {Spatial control over atomic layer deposition using microcontact-printed resists},
    14109   pages = {8799-8807},
    14110   journal = {Surface & Coatings Technology},
    14111   volume = {201},
    14112   author = {Jiang, X. and chen, R. and Bent, S.F.}
    14113 }
    14114 @article{Chen2007,
    14115   year = {2007},
    14116   title = {A dose-rate effect in single-particle electron microscopy},
    14117   pages = {92-100},
    14118   journal = {Journal of Structural Biology},
    14119   volume = {161},
    14120   author = {Chen, J.Z. and Sachse, C. and Xu, C. and Mielke, T. and Spahn, C.M.T. and Grigorieff, N.}
    14121 }
    14122 @article{Alloyeau2010,
    14123   year = {2010},
    14124   title = {Imaging of soft and hard materials using a Boersch phase plate in a transmission electron microscope},
    14125   pages = {563-570},
    14126   journal = {Ultramicroscopy},
    14127   volume = {110},
    14128   author = {Alloyeau, D. and Hsieh, W.K. and Anderson, E.H. and Hilken, L. and Benner, G. and Meng, X. and Chen, F.R. and Kisielowski, C.}
    14129 }
    14130 @article{Heel2005,
    14131   year = {2005},
    14132   title = {Fourier shell correlation threshold criteria},
    14133   pages = {250-262},
    14134   journal = {Journal of Structural Biology},
    14135   volume = {151},
    14136   author = {Heel, M. van and Schatz, M.}
    14137 }
    14138 @article{Heel2000,
    14139   number = {4},
    14140   year = {2000},
    14141   title = {Single-particle electron cryo-microscopy: towards atomic resolution},
    14142   pages = {307-369},
    14143   journal = {Quarterly Review of Biophysics},
    14144   volume = {33},
    14145   author = {Heel, M. van and Gowen, B. and Matadeen, R. and Orlova, E.V. and Finn, R. and Pape, T. and Cohen, D. and Stark, H. and Schmidt, R. and Schatz, M. and Patwardhan, A.}
    14146 }
    14147 @article{Walther2006a,
    14148   year = {2006},
    14149   title = {Preliminary Results from the First Monochromated and Aberration Corrected 200-kV Field-Emission Scanning Transmission Electron Microscope},
    14150   pages = {498-505},
    14151   journal = {Microscopy and Microanalysis},
    14152   volume = {12},
    14153   author = {Walther, T. and Stegmann, H.}
    14154 }
    14155 @article{Yamaguchi2009,
    14156   year = {2009},
    14157   title = {Smart specimen preparation for freeze substitution and serial ultrathin sectioning of yeast cells},
    14158   pages = {261-266},
    14159   journal = {Journal of Electron Microscopy},
    14160   volume = {58},
    14161   author = {Yamaguchi, M. and Okada, H. and Namiki, Y.}
    14162 }
    14163 @article{Sparrow1916,
    14164   year = {1916},
    14165   title = {On spectroscopic resolving power},
    14166   pages = {76-86},
    14167   journal = {Astrophysical Journal},
    14168   volume = {44},
    14169   author = {Sparrow, C.M.}
    14170 }
    14171 @article{Rose1984,
    14172   year = {1984},
    14173   title = {Information transfer in transmission electron microscopy},
    14174   pages = {173-192},
    14175   journal = {Ultramicroscopy},
    14176   volume = {15},
    14177   author = {Rose, H.}
    14178 }
    14179 @article{Martinez2008,
    14180   year = {2008},
    14181   title = {The use of multipole fields for aberration correctionin pi/2 Wien filters},
    14182   pages = {193-198},
    14183   journal = {Physics Procedia},
    14184   volume = {1},
    14185   author = {Martinez, G. and Tsuno, K.}
    14186 }
    14187 @article{Driel2009,
    14188   year = {2009},
    14189   title = {Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells},
    14190   pages = {669-684},
    14191   journal = {European Journal of Cell Biology},
    14192   volume = {88},
    14193   author = {Driel, L.F. van and Valentijn, J.A. and Valentijn, K.M. and Koning, R.I. and Koster, A.J.}
    14194 }
    14195 @article{Pomfret2007,
    14196   year = {2007},
    14197   title = {Application of the iterative helical real-space reconstruction method to large membranous tubular crystals of P-type ATPases},
    14198   pages = {106-116},
    14199   journal = {Journal of Strcutural Biology},
    14200   volume = {157},
    14201   author = {Pomfret, A.J. and Rice, W.J. and Stokes, D.L.}
    14202 }
    14203 @article{Beek1996,
    14204   year = {1996},
    14205   title = {Wave function reconstruction in {HRTEM}: the parabola method},
    14206   pages = {167-183},
    14207   journal = {Ultramicroscopy},
    14208   volume = {64},
    14209   author = {Beek, M. op de and Dyck, D. van and Coene, W.}
    14210 }
    14211 @article{Lichte2008,
    14212   year = {2007},
    14213   title = {Performance limits of electron holography},
    14214   pages = {256-262},
    14215   journal = {Ultramicroscopy},
    14216   volume = {108},
    14217   author = {Lichte, H.}
    14218 }
    14219 @article{Hue2005,
    14220   year = {2005},
    14221   title = {Calibration of Projector Lens Distortions for Quantitative High-Resolution TEM},
    14222   pages = {552-553},
    14223   journal = {Microsc Microanal},
    14224   volume = {11 (Suppl 2)},
    14225   author = {Hue, F. and Johnson, C.L. and Lartigue-Korinek, S. and Wang, G. and Buseck, P.R. and Hytch, M.J.}
    14226 }
    14227 @article{Kaiser2002,
    14228   year = {2002},
    14229   title = {Direct observation of defect-mediated cluster nucleation},
    14230   pages = {102-106},
    14231   journal = {Nature materials},
    14232   volume = {1},
    14233   author = {Kaise, U. and Muller, D.A. and Grazul, J.L. and Chuvilin, A. and Kawasaki, M.}
    14234 }
    14235 @article{Turchanin2009,
    14236   year = {2009},
    14237   title = {One Nanometer Thin Carbon Nanosheets with Tunable Conductivity and Stiffness},
    14238   pages = {1233-1237},
    14239   journal = {Advanced Materials},
    14240   volume = {21},
    14241   author = {Turchanin, A. and Beyer, A. and Nottbohm, T. and Zhang, X. and Stosch, R. and and Sologubenko, A.S. and Mayer, J. and Hinze, P. and Weimann, T. and {G\"olzh\"auser}}
    14242 }
    14243 @article{Mkhoyan2006,
    14244   year = {2006},
    14245   title = {Direct Determination of Local Lattice Polarity in Crystals},
    14246   pages = {1354},
    14247   journal = {Science},
    14248   volume = {312},
    14249   author = {Mkhoyan, K.A. and Batson, P.E. and Cha, J. and Schaff, W.J. and Silcox, J.}
    14250 }
    14251 @inproceedings{Sawada2006,
    14252   title = {Method to Measure Aberrations from Ronchigram by Auto-Correlation Function},
    14253   journal = {Journal of Electron Microscopy},
    14254   volume = {IMC 16},
    14255   address = {Sapporo, Japan},
    14256   author = {Sawada, H. and Sannomiya, T. and Hosokawa, F. and Kaneyama, T. and Kondo, Y. and Tanishiro, Y. and Takayanagi, K.}
    14257 }
    14258 @article{Allen2003,
    14259   year = {2003},
    14260   title = {Atomic Resolution Electron Energy Loss Spectroscopy Imaging in Aberration Corrected Scanning Transmission Electron Microscopy},
    14261   pages = {105503},
    14262   journal = {Physical Review Letters},
    14263   volume = {91},
    14264   author = {Allen, L.J. and Findlay, S.D. and Lupini, A.R. and Oxley, M.P. and Pennycook, S.J.}
    14265 }
    14266 @article{Erni2010,
    14267   year = {2010},
    14268   title = {Optimization of exit-plane waves restored from {HRTEM} through-focal series},
    14269   pages = {151-161},
    14270   journal = {Ultramicroscopy},
    14271   volume = {110},
    14272   author = {Erni, R. and Rossell, M.D. and Nakashima, P.N.H.}
    14273 }
    14274 @article{Meyer1998,
    14275   year = {1998},
    14276   title = {The effects of electron and photon scattering on signal and noise transfer properties of scintillators in CCD cameras used for electron detection},
    14277   pages = {23-33},
    14278   journal = {Ultramicroscopy},
    14279   volume = {75},
    14280   author = {Meyer, R.R. and Krikland, A.I.}
    14281 }
    14282 @article{Lencova2008,
    14283   year = {2008},
    14284   title = {A pitfall in the calculation of higher order aberrations},
    14285   pages = {737-740},
    14286   journal = {Ultramicroscopy},
    14287   volume = {108},
    14288   author = {Lencova, B. and Lenc, M. and Hawkes, P.W.}
    14289 }
    14290 @article{Browning1996,
    14291   year = {1996},
    14292   title = {Direct Experimental Determination of the Atomic Structure at Internal Interfaces},
    14293   pages = {1779},
    14294   journal = {Journal of Physics D},
    14295   volume = {29},
    14296   author = {Browning, N.D. and Pennycook, S.J.}
    14297 }
    14298 @article{Fellmann2002,
    14299   year = {2002},
    14300   title = {A relational database for {cryoEM}: experience at one year and 50000 images},
    14301   pages = {273-282},
    14302   journal = {Journal of Structural Biology},
    14303   volume = {137},
    14304   author = {Fellmann, D. and Pulokas, J. and MIlligan, R.A. and Carragher, B. and Potter, C.S.}
    14305 }
    14306 @article{Mueller2007,
    14307   number = {11},
    14308   year = {2006},
    14309   title = {Biological Scanning Transmission Electron Microscopy: Imaging and Single Molecule Mass Determination},
    14310   pages = {749-752},
    14311   journal = {Chimia},
    14312   volume = {60},
    14313   author = {{M\"uller}, S.A. and Engel, A.}
    14314 }
    14315 @article{Rhinow2008,
    14316   year = {2008},
    14317   title = {Electron cryo-microscopy of biological specimens on conductive titanium-silicon metal glass films},
    14318   pages = {698-705},
    14319   journal = {Ultramicroscopy},
    14320   volume = {108},
    14321   author = {Rhinow, D. and Kuhlbrandt, W.}
    14322 }
    14323 @article{Nomaguchi2004,
    14324   year = {2004},
    14325   title = {Separation of linear and non-linear imaging components in high-resolution transmission electron microscope images},
    14326   pages = {403-406},
    14327   journal = {Journal of Electron Microscopy},
    14328   volume = {53},
    14329   author = {Nomaguchi, T. and Kawasaki, T. and Kimura, Y. and Takai, Y.}
    14330 }
    14331 @article{Browning1997,
    14332   year = {1997},
    14333   title = {{EELS} in the {STEM}: Determination of Materials Properties on the Atomic Scale},
    14334   pages = {333},
    14335   journal = {Micron},
    14336   volume = {28},
    14337   author = {Browning, N.D. and Wallis, D.J. and Nllist, P.D. and Pennycook, S.J.}
    14338 }
    14339 @article{Gipson2007,
    14340   year = {2007},
    14341   title = {2dx - User-friendly image processing for 2D crystals},
    14342   pages = {64-72},
    14343   journal = {Journal of Strcutural Biology},
    14344   volume = {157},
    14345   author = {Gipson, B. and Zeng, X. and Zhang, Z.Y. and Stahlberg, H.}
    14346 }
    14347 @article{Oho1997,
    14348   number = {7},
    14349   year = {1997},
    14350   title = {New Generation Scanning Electron Microscopy Technology Based on the Concept of Active Image Processing},
    14351   pages = {483-488},
    14352   journal = {Scanning},
    14353   volume = {19},
    14354   author = {Oho, E. and Hoshino, Y. and Ogashiwa, T.}
    14355 }
    14356 @article{Penczek2002,
    14357   year = {2002},
    14358   title = {Three-dimensional spectral signal-to-noise ratio for a class of reconstruction algorithms},
    14359   pages = {34-46},
    14360   journal = {Journal of Structural Biology},
    14361   volume = {138},
    14362   author = {Penczek, P.A.}
    14363 }
    14364 @article{Gu2003,
    14365   number = {23},
    14366   year = {2003},
    14367   title = {3D electron microscopy reveals the variables deposition and protein dynamics of the peripheral pyruvate dehydrogenase component about the core},
    14368   pages = {7015-7020},
    14369   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    14370   volume = {100},
    14371   author = {Gu, Y. and Zhou, Z.H. and McCarthy, D.B. and Reed, L.J. and Stoops, J.K.}
    14372 }
    14373 @article{Bouwer2004,
    14374   year = {2004},
    14375   title = {Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement},
    14376   pages = {297-306},
    14377   journal = {Journal of Structural Biology},
    14378   volume = {148},
    14379   author = {Bouwer, J.C. and Mackey, M.R.and Lawrence, A. and Deerinck, T.J. and Jones, Y.Z. and Terada, M. and Martone, M.E. and Peltier, S. and Ellisman, M.H.}
    14380 }
    14381 @article{Hell2007,
    14382   year = {2007},
    14383   title = {Far-Field Optical Nanoscopy},
    14384   pages = {1153-1158},
    14385   journal = {Science},
    14386   volume = {316},
    14387   author = {Hell, S.W.}
    14388 }
    14389 @techreport{Bosch2004,
    14390   number = {PR-TN-2004/00364},
    14391   year = {2004},
    14392   title = {The use of mutual information in image registration},
    14393   type = {Technical Note},
    14394   address = { Eindhoven, The Netherlands},
    14395   institution = {Philips Research},
    14396   author = {Bosch, E.G.T.}
    14397 }
    14398 @article{Kunji2001,
    14399   year = {2001},
    14400   title = {Electron Crystallographic Analysis of Two-Twodimensional Crystals of Sensory Rhodopsin II:A 6.9 {\AA} Projection Structure},
    14401   pages = {279-293},
    14402   journal = {Journal of Molecular Biology},
    14403   volume = {308},
    14404   author = {Kunji, E.R.S. and Spudich, E.N. and Grisshammer, R. and Henderson, R. and Spudich, J.L.}
    14405 }
    14406 @article{Reichenbach1991,
    14407   year = {1991},
    14408   title = {Characterizing digital image acquisition devices},
    14409   pages = {170-177},
    14410   journal = {Optical Engineering},
    14411   volume = {30},
    14412   author = {Reichenbach, S.E. and Park, S.K. and Narayanswamy, R.}
    14413 }
    14414 @article{Bos1993,
    14415   year = {1993},
    14416   title = {Resolvability of the parameters of multiexponentials and other sum models},
    14417   pages = {313-322},
    14418   journal = {IEEE Transactions of Signal Processing},
    14419   volume = {41},
    14420   author = {Bos, A. van den and Swarte, J.H.}
    14421 }
    14422 @article{Gu2007,
    14423   year = {2007},
    14424   title = {Band-gap measurements of direct and indirect semiconductors using monochromated electrons},
    14425   pages = {195214},
    14426   journal = {Physical Review B},
    14427   volume = {75},
    14428   author = {Gu, L. and Srot, V. and Sigle, W. and Koch, C. and Aken, P. van and Scholz, F. and Thapa, S.B. and Kirchner, C. and Jetter, M. and Ruehle, M.}
    14429 }
    14430 @article{Kisielowski2008,
    14431   year = {2008},
    14432   title = {Detection of Single Atoms and Buried Defects in Three Dimensions by Aberration-Corrected Electron Microscope with 0.5-AA Information Limit},
    14433   pages = {469-477},
    14434   journal = {Microscopy and Microanalysis},
    14435   volume = {14},
    14436   author = {Kisielowski, C.}
    14437 }
    14438 @article{Nellist2006,
    14439   year = {2006},
    14440   title = {Confocal operation of a transmission electron microscope with two aberration correctors},
    14441   pages = {124105},
    14442   journal = {Applied Physics Letters},
    14443   volume = {89},
    14444   author = {Nellist, P.D. and behan, G. and Kirkland, A.I. and Hetherington, C.J.D.}
    14445 }
    14446 @article{Scheres2005,
    14447   year = {2005},
    14448   title = {Fast maximum-likelihood refinement of electron microscopy images},
    14449   pages = {ii243-ii244},
    14450   journal = {Bioinfomatics},
    14451   volume = {21 S2},
    14452   author = {Scheres, S.H.W. and Valle, M. and Carazo, J.-M.}
    14453 }
    14454 @article{Girit2009,
    14455   year = {2009},
    14456   title = {Graphene at the Edge: Stability and Dynamics},
    14457   pages = {1705-1707},
    14458   journal = {Science},
    14459   volume = {323},
    14460   author = {Girit, C.O. and Meyer, J.C. and Erni, R.and Rossel, M.D. and Kisielowski, C. and Yang, Li. and Park, C.-H. and Crommie, M.F. and Cohen, M.L. and Louie, S.G. and Zettl, A.}
    14461 }
    14462 @article{Yamazaki2005,
    14463   year = {2005},
    14464   title = {Precise measurement of third-order spherical aberration using low-order zone-axis {Ronchigrams}},
    14465   note = {in press},
    14466   journal = {Ultramicroscopy},
    14467   author = {Yamazaki, T. and Kotaka, Y. and Kikuchi, Y. and Watanabe, K.}
    14468 }
    14469 @article{Ronchi1964,
    14470   number = {4},
    14471   year = {1964},
    14472   title = {Forty years of history of a grating interferometer},
    14473   pages = {437-452},
    14474   journal = {Applied Optics},
    14475   volume = {3},
    14476   author = {Ronchi, V.}
    14477 }
    14478 @article{Lorusso2003,
    14479   number = {4},
    14480   year = {2003},
    14481   title = {Experimental Resolution Measurement in Critical Dimension Scanning Electron Microscope Metrology},
    14482   pages = {175-180},
    14483   journal = {Scanning},
    14484   volume = {25},
    14485   author = {Lorusso, G.F. and Joy, D.C.}
    14486 }
    14487 @article{Yin2003,
    14488   year = {2003},
    14489   title = {A statistical approach to computer processing of cryo-electron microscope images: virion classification and {3-D} reconstruction},
    14490   pages = {24-50},
    14491   journal = {Journal of Structural Biology},
    14492   volume = {144},
    14493   author = {Yin, Z. and Zheng, Y. and Doerschuk, P.C. and Nararajan, P. and Johnson, J.E.}
    14494 }
    14495 @article{Bammes2009,
    14496   year = {2009},
    14497   title = {Radiation damage effects at four specimen temperatures from 4 K to 100 K},
    14498   journal = {Journal of Structural Biology},
    14499   author = {Bammes, B.E. and Jakana, J. and Schmid, M.F. and Chiu, W.}
    14500 }
    14501 @article{Shao1988,
    14502   number = {11},
    14503   year = {1988},
    14504   title = {On the fifth order aberration in a sextupole corrected probe forming system},
    14505   pages = {2428-2437},
    14506   journal = {Rev. Sci. Instrum.},
    14507   volume = {59},
    14508   author = {Shao, Z.}
    14509 }
    14510 @article{Haas1999,
    14511   year = {1999},
    14512   title = {A Symmetry Mismatch at the Site of {RNA} Packaging in the Polymerase Complex of {dsRNA} Bacteriophage $\phi$6},
    14513   pages = {357-372},
    14514   journal = {Journal of Molecular Biology},
    14515   volume = {294},
    14516   author = {Haas, F. de and Paatero, A.O. and Mindich, L. and Bamford, D.H. and Fuller, S.D.}
    14517 }
    14518 @article{Glaeser2004,
    14519   year = {2004},
    14520   title = {Specimen charging on thin films with one conducting layer: discussion of physical principles},
    14521   pages = {790-796},
    14522   journal = {Microscopy and Microanalysis},
    14523   volume = {10},
    14524   author = {Glaeser, R.M. and Downing, K.H.}
    14525 }
    14526 @article{Takai2006,
    14527   year = {2006},
    14528   title = {Molecular-scale imaging of unstained deoxyribonucleic acid fibers by phase transmission electron microscopy},
    14529   pages = {133903},
    14530   journal = {Applied Physics Letters},
    14531   volume = {89},
    14532   author = {Takai, Y. and Nomaguchi, T. and Matsushita, S. and Kimura, Y.}
    14533 }
    14534 @article{Gabashvili2000,
    14535   year = {2000},
    14536   title = {Solution Structure of the {E. coli} {70S} Ribosome at 11.5{\AA} Resolution},
    14537   pages = {537-549},
    14538   journal = {Cell},
    14539   volume = {100},
    14540   author = {Gabashvili, I.S. and Agrawal, R.K. and Spahn, C.M.T. and Gracssucci, R.A. and Svergun, D.I. and Frank, J. and Penczek, P.}
    14541 }
    14542 @article{Kabius2009,
    14543   year = {2009},
    14544   title = {First application of Cc-corrected imaging for high-resolution and energy-filtered TEM},
    14545   pages = {1-9},
    14546   journal = {Journal Of Electron Microscopy},
    14547   volume = {1},
    14548   author = {Kabius, B. and Hartel, P. and Haider, M. and {M\"uller}, H. and Uhlemann, S. and Loebau, U. and Zach, J. and Rose, H.}
    14549 }
    14550 @article{Rose1977,
    14551   year = {1977},
    14552   title = {Nonstandard imaging methods in electron microscopy},
    14553   pages = {251-267},
    14554   journal = {Ultramicroscopy},
    14555   volume = {2},
    14556   author = {Rose, H.}
    14557 }
    14558 @article{HohmannMarriott2009_SI,
    14559   number = {10},
    14560   year = {2009},
    14561   title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography},
    14562   pages = {729-732},
    14563   note = {Supplementary Information},
    14564   journal = {Nature Methods},
    14565   volume = {6},
    14566   author = {Hohmann-Marriott, M.F. and Sousa, A.A. and Azari, A.A. and Glushakova, S. and Zhang, G. and Zimmerberg, J. and Leapmann, R.D.}
    14567 }
    14568 @article{Zhu2009,
    14569   year = {2009},
    14570   title = {Imaging single atoms using secondary electrons with an aberration-corrected electron microscope},
    14571   pages = {808-811},
    14572   journal = {Nature Methods},
    14573   volume = {8},
    14574   author = {Zhu, Y. and Inada, H. and Nakamura, K. and Wall, J.}
    14575 }
    14576 @article{Pennycook1988,
    14577   year = {1988},
    14578   title = {Chemically Sensitive Structure Imaging with a Scanning Transmission Electron Microscope},
    14579   pages = {565},
    14580   journal = {Nature},
    14581   volume = {336},
    14582   author = {Pennycook, S.J. and Boatner, L.A.}
    14583 }
    14584 @article{Lehmann1999,
    14585   year = {1999},
    14586   title = {Electron Holography at atomic dimensions - present state},
    14587   pages = {249-263},
    14588   journal = {Materials Characterization},
    14589   volume = {42},
    14590   author = {Lehmann, M. and Lichte, H. and Geiger, D. and Lang, G. and Schweda, E.}
    14591 }
    14592 @article{Zuo2003,
    14593   year = {2003},
    14594   title = {Atomic Resolution Imaging of a Carbon Nanotube from Diffraction Intensities},
    14595   pages = {1419-1421},
    14596   journal = {Science},
    14597   volume = {300},
    14598   author = {Zuo, J.M. and Vartanyants, I. and Gao, M. and Zhang, R. and Nagahara, L.A.}
    14599 }
    14600 @article{Sousa2009,
    14601   year = {2009},
    14602   title = {Monte Carlo electron-trajectory simulations in bright-field and dark-field STEM:Implications for tomography of thick biological sections},
    14603   pages = {213-221},
    14604   journal = {Ultramicroscopy},
    14605   volume = {109},
    14606   author = {Sousa, A.A. and Hohmann-Marriott, M.F. and Zhang, G. and Leapman, R.D.}
    14607 }
    14608 @article{Downing1975,
    14609   year = {1975},
    14610   title = {Discrimination of Heavy and Ligth Components in Electron Microscopy Using Single-Sideband Holographic Techniques},
    14611   pages = {155-175},
    14612   journal = {Optik},
    14613   volume = {42},
    14614   author = {Downing, K.H. and Siegel, B.M.}
    14615 }
    14616 @article{Takeguchi2008,
    14617   year = {2008},
    14618   title = {Development of a stage-scanning system for high-resolution confocal STEM},
    14619   pages = {123-127},
    14620   journal = {Journal of Electron Microscopy},
    14621   volume = {57},
    14622   author = {Takeguchi, M. and Hasimoto, A. and Shimojo, M. and Mitsuishi, K. and Furuya, K.}
    14623 }
    14624 @article{Nottbohm2008,
    14625   year = {2008},
    14626   title = {Novel carbon nanosheets as support for ultrahigh-resolution structural analysis of nanoparticles},
    14627   pages = {885-892},
    14628   journal = {Ultramicroscopy},
    14629   volume = {108},
    14630   author = {Nottbohm, C.T. and Beyer, A. and Sologubenko, A.S. and Ennen, I. and {H\"utten}, A. and {R\"osner}, H. and Eck, W. and Mayer, J. and {G\"olzh\"auser}}
    14631 }
    14632 @article{Mitterbauer2003,
    14633   year = {2003},
    14634   title = { Electron energy-loss near-edge structures of 3d transition metal oxides recorded at high-energy resolution},
    14635   pages = {469-480},
    14636   journal = {Ultramicroscopy},
    14637   volume = {96},
    14638   author = {Mitterbauer, C. and Kothleitner, G. and Grogger, W. and Zandbergen, H. and Freitag, B. and Tiemeijer, P.C. and Hofer, F.}
    14639 }
    14640 @article{Morniroli1992,
    14641   year = {1992},
    14642   title = {Microdiffratction as a tool for crystal structure identification and determination},
    14643   pages = {219-239},
    14644   journal = {Ultramicroscopy},
    14645   volume = {45},
    14646   author = {Morniroli, J.P. and Steeds, J.W.}
    14647 }
    14648 @article{Hetherington2008,
    14649   year = {2008},
    14650   title = {High-Resolution TEM and the Application of Direct and Indirect Aberration Correction},
    14651   pages = {60-67},
    14652   journal = {Microscopy and Microanalysis},
    14653   volume = {14},
    14654   author = {Hetherington, C.J.D. and Chang, L.Y.S. and Haigh, S. and Nellist, P.D. and Gontard, L.C. and Dunin-Borkowski, R.E. and Kirkland, A.I.}
    14655 }
    14656 @article{Hartwell1999,
    14657   year = {1999},
    14658   title = {From molecular to modular cell biology},
    14659   pages = {C47-C50},
    14660   journal = {Nature},
    14661   volume = {402},
    14662   author = {Hartwell, L.H. and Hopfield, J.J. and Leibler, S. and Murray, A.M.}
    14663 }
    14664 @article{Uno2005,
    14665   year = {2005},
    14666   title = {Aberration correction and its automatic control in scanning electron microscopes},
    14667   pages = {438-448},
    14668   journal = {Optik},
    14669   volume = {116},
    14670   author = {Uno, S. and Honda, K. and Nakamura, N. and Matsuya, M. and Zach, J.}
    14671 }
    14672 @article{Joy2002,
    14673   number = {1},
    14674   year = {2002},
    14675   title = {{SMART}- a programm to measure {SEM} resolution and imaging performance},
    14676   pages = {24-34},
    14677   journal = {Journal of Microscopy},
    14678   volume = {208},
    14679   author = {Joy, D.C.}
    14680 }
    14681 @article{Danev2006,
    14682   year = {2006},
    14683   title = {Applicability of thin film phase plates in biological electron microscopy},
    14684   pages = {35-43},
    14685   journal = {Biophysics},
    14686   volume = {2},
    14687   author = {Danev, R. and Nagayama, K.}
    14688 }
    14689 @article{Malac2006,
    14690   year = {2006},
    14691   title = {Bright-field {TEM} imaging of single molecules: Dream or near future?},
    14692   pages = {40-49},
    14693   journal = {Ultramicroscopy},
    14694   volume = {107},
    14695   author = {Malac, M. and Beleggia, M. and Egerton, R. and Zhu, Y.}
    14696 }
    14697 @article{Harutyunyan2009,
    14698   year = {2009},
    14699   title = {Preferential Growth of Single-Walled Carbon Nanotubes with Metallic Conductivity},
    14700   pages = {116-120},
    14701   journal = {Science},
    14702   volume = {326},
    14703   author = {Harutyunyan, A.R. and Chen, G. and Paronyan, T.M. and Pigos, E.M. and Kuznetsov, O.A. and Hewaparakrama, K. and Kim, S.M. and Zakharov, D. and Stach, E.A. and Sumanasekera, G.U.}
    14704 }
    14705 @article{Yan2007,
    14706   year = {2007},
    14707   title = {AUTO3DEM - an automated and high throughput program for image reconstruction of icosahedral particles},
    14708   pages = {73-82},
    14709   journal = {Journal of Strcutural Biology},
    14710   volume = {157},
    14711   author = {Yan, X. and Sinkovits, R.S. and Baker, T.S.}
    14712 }
    14713 @article{Buban2009,
    14714   year = {2009},
    14715   title = {High-resolution low-dose scanning transmission electron microscopy},
    14716   pages = {1-10},
    14717   journal = {Journal of Electron Microscopy},
    14718   author = {Buban, J.P. and Ramasse, Q. and Gipson, B. and Browning, N.D. and Stahlberg, H.}
    14719 }
    14720 @article{Bleloch2004,
    14721   year = {2004},
    14722   title = {Imaging at the picometer scale},
    14723   pages = {42-48},
    14724   journal = {Materials Today},
    14725   author = {Bleloch, A. and Lupini, A. }
    14726 }
    14727 @article{Nelayah2009,
    14728   number = {7},
    14729   year = {2009},
    14730   title = {Direct imaging of surface plasmon resonances on single triangular silver nanoprisms at optical wavelength using low-loss EFTEM imaging},
    14731   pages = {1003-1005},
    14732   journal = {Optics Letters},
    14733   volume = {34},
    14734   author = {Nelayah, J. and Gu, L. and Sigle, W. and Koch, C.T. and Pastoriza-Santos, I. and Liz-Marzan, L.M. and Aken, P.A. van}
    14735 }
    14736 @article{Penrose1956,
    14737   year = {1956},
    14738   title = {On best approximate solution of linear matrix equations},
    14739   pages = {17-19},
    14740   journal = {Proceedings of the Cambridge Philosophical Society},
    14741   volume = {52},
    14742   author = {Penrose, R.}
    14743 }
    14744 @article{Buczko2000,
    14745   year = {2000},
    14746   title = {Excitonic Effects in Core-Excitation Spectra of Semiconductors},
    14747   pages = {2168},
    14748   journal = {Physical Review Letters},
    14749   volume = {85},
    14750   author = {Buczko, R. and Duscher, G. and Pennycook, S>J. and Pantelides, S.T.}
    14751 }
    14752 @article{Penrose1955,
    14753   year = {1955},
    14754   title = {A generalized inverse for matrices},
    14755   pages = {406-413},
    14756   journal = {Proceedings of the Cambridge Philosophical Society},
    14757   volume = {51},
    14758   author = {Penrose, R.}
    14759 }
    14760 @article{Cooper2007,
    14761   year = {2007},
    14762   title = {Medium resolution off-axis electron holography with mV sensitivity},
    14763   journal = {Applied Physics Letters},
    14764   author = {Cooper, D. and Truche, R. and Rivallin, P. and Hartmann, J.-M. and Laugier, F. and Bertin, F. and Chabli, A. and Rouviere, J.-L.}
    14765 }
    14766 @article{Frank2009,
    14767   number = {3},
    14768   year = {2009},
    14769   title = {Single-particle reconstructionof biological macromolecules in electron microscopy - 30 years},
    14770   pages = {139-158},
    14771   journal = {Quaterly Reviews of Biophysics},
    14772   volume = {42},
    14773   author = {Frank, J.}
    14774 }
    14775 @book{Bronstein1991,
    14776   edition = {25th},
    14777   year = {1991},
    14778   title = {Taschenbuch der Mathematik},
    14779   address = {Thun, Frankfurt (Main)},
    14780   publisher = {Teubner},
    14781   author = {Bronstein, I.N. and Semendjajew, K.A.}
    14782 }
    14783 @article{Krivanek2008a,
    14784   year = {2008},
    14785   title = {Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy},
    14786   pages = {121-160},
    14787   journal = {Advances in Imaging and Electron Physics},
    14788   volume = {153},
    14789   author = {Krivanek, O.L. and Delby, N. and keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.}
    14790 }
    14791 @article{Nellist2000,
    14792   year = {2000},
    14793   title = {The principles and interpretation of annular dark-field z-contrast imaging},
    14794   pages = {147-203},
    14795   note = {Copy Bernd,Rolf},
    14796   journal = {Advances in Imaging and Electron Physics},
    14797   volume = {113},
    14798   author = {Nellist, P.D. and Pennycook, S.J.}
    14799 }
    14800 @article{Chu2009a,
    14801   year = {2009},
    14802   title = {Probing surface plasmons in individual Ag nanoparticles in the ultra-violet spectral regime},
    14803   pages = {235705},
    14804   journal = {Nanotechnology},
    14805   volume = {20},
    14806   author = {Chu, M.-W. et al.}
    14807 }
    14808 @article{Boisset1997,
    14809   year = {1997},
    14810   title = {Effects of angular oversampling in three-dimensional reconstruction},
    14811   pages = {131-145},
    14812   journal = {Scanning Microscopy},
    14813   volume = {11},
    14814   author = {Boisset, N. and Penczek, P.A. and Taveau, J-C. and You, V. and Haas, F. de and Lamy, J.}
    14815 }
    14816 @article{Vincent1994,
    14817   year = {1994},
    14818   title = {Double concial beam-rocking system for measurement of integrated electron diffreation intensities},
    14819   pages = {271-282},
    14820   journal = {Ultramicroscopy},
    14821   volume = {53},
    14822   author = {Vincent, R. and Midgley, P.A.}
    14823 }
    14824 @article{Scheres2005a,
    14825   year = {2005},
    14826   title = {Maximum-likelihood Multi-reference Refinement for Electron Microscopy Images},
    14827   pages = {139-149},
    14828   journal = {Journal of Molecular Biology},
    14829   volume = {348},
    14830   author = {Scheres, S.H.W. and Valle, M. and {Nu\~nez}, R. and Sorzano, C.O.S. and Marabini, R. and Herman, G.T. and Carazo, J.-M.}
    14831 }
    14832 @article{Cowley2001,
    14833   number = {3},
    14834   year = {2001},
    14835   title = {{STEM} imaging with a thin annular detector},
    14836   pages = {147-155},
    14837   journal = {Journal of Electron Microscopy},
    14838   volume = {50},
    14839   author = {Cowley, J.M.}
    14840 }
    14841 @article{Uhlemann1996,
    14842   year = {1996},
    14843   title = {Acceptance of imaging energy filters},
    14844   pages = {161-167},
    14845   journal = {Ultramicroscopy},
    14846   volume = {63},
    14847   author = {Uhlemann, S. and Rose, H.}
    14848 }
    14849 @article{Frank1981,
    14850   year = {1981},
    14851   title = {Computer Averaging of Electron Micrographs of 40S Ribosomal Subunits},
    14852   journal = {Science},
    14853   volume = {214},
    14854   author = {Frank, J. and Verschoor, A. and Boublik, M.}
    14855 }
    14856 @article{Maccagnano-Zacher2008,
    14857   year = {2008},
    14858   title = {Effects of tilt on high-resolution ADF-STEM imaging},
    14859   pages = {718-726},
    14860   journal = {Ultramicroscopy},
    14861   volume = {187},
    14862   author = {Maccagnano-Zacher, S.E. and Mkhoyan, K.A. and Kirkland, E.J. and Silcox, J.}
    14863 }
    14864 @article{Gubbens2010,
    14865   year = {2010},
    14866   title = {The GIF quantum, a next generation post-column imaging energy filter},
    14867   journal = {Ultramicroscopy},
    14868   author = {Gubbens, A. and Barfels, M. and Trevor, C. and Twesten, R. and Mooney, P. and Thomas, P. and Menon, N. and Kraus, B. and Mao, C. and Mcginn, B.}
    14869 }
    14870 @article{James1999,
    14871   year = {1999},
    14872   title = {Practical aspects of atomic resolution imaging and analysis in {STEM}},
    14873   pages = {125-139},
    14874   journal = {Ultramicroscopy},
    14875   volume = {78},
    14876   author = {James, E.M. and Browning, N.D.}
    14877 }
    14878 @article{Du2007,
    14879   year = {2007},
    14880   title = {Quantitative comparison of image contrast and pattern between experimental and simulated high-resolution transmission electron micrographs},
    14881   pages = {281-292},
    14882   journal = {Ultramicroscopy},
    14883   volume = {107},
    14884   author = {Du, K. and Hochmeister, K. von and Philipp, F.}
    14885 }
    14886 @article{Krivanek1991,
    14887   year = {1999},
    14888   title = {Developments in EELS instrumentation for spectroscopy and imaging},
    14889   pages = {315-332},
    14890   journal = {Mirosc. Mircoanal. Microstruct},
    14891   volume = {2},
    14892   author = {Krivanek, O.L. and Gubbens, A.J. and Dellby, N.}
    14893 }
    14894 @article{Moore1920,
    14895   year = {1920},
    14896   title = {On the reciprocal of the general algebraic matrix},
    14897   pages = {394-395},
    14898   journal = {Bulletin of the American Mathematical Society},
    14899   volume = {26},
    14900   author = {Moore, E.H.}
    14901 }
    14902 @article{James1997,
    14903   year = {1997},
    14904   title = {A method for measuring the effective source coherence in a field emission transmission electron microscope},
    14905   pages = {174-179},
    14906   journal = {Applied Surface Science},
    14907   volume = {111},
    14908   author = {James, E.M. and Rodenburg, J.M}
    14909 }
    14910 @article{Davey2002,
    14911   year = {2002},
    14912   title = {{DNA}-dependent divalent cation binding in the nucleosome core particle},
    14913   pages = {11169-11174},
    14914   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    14915   volume = {99},
    14916   author = {Davey, C.A. and Richmond, T.J.}
    14917 }
    14918 @article{Kisielowski2001,
    14919   year = {2001},
    14920   title = {Imaging columns of the light elements carbon,nitrogen and oxygen with sub {\AA}ngstrom resolution},
    14921   pages = {243-263},
    14922   journal = {Ultramicroscopy},
    14923   volume = {89},
    14924   author = {Kisielowski, C. and Hetherington, C.J.D. and Wang, Y.C. and Kilaas, R. and O'keefe, M.A. and Thust, A.}
    14925 }
    14926 @article{Chu2009,
    14927   year = {2009},
    14928   title = {Crystal Structure of the {30S} Ribosomal Subunit from Thermus thermophilus: Purification, Crystallization and Structure Determination},
    14929   journal = {Journal of Molecualar Biology},
    14930   author = {Chu, M.-W. and Myroshnchenko, V. and Chen, C.H. and Deng, J.-P. and Mou, C.-Y. and Garcia de Abajo, F.J.G.}
    14931 }
    14932 @article{Chu2008,
    14933   year = {2008},
    14934   title = {Surface exciton polaritons in individual Au nanoparticles in the far-ultraviolet spectral regime},
    14935   pages = {245402},
    14936   journal = {Physical Review B},
    14937   volume = {77},
    14938   author = {Chu, M.-W. and Chen, C.-H. and Garcia de Abajo, F.J.G. and Deng, J.-P. and Mou, C.-Y.}
    14939 }
    14940 @article{Duscher2001,
    14941   year = {2001},
    14942   title = {Core-Hole Effects on Energy-Loss Near-Edge Structure},
    14943   pages = {355},
    14944   journal = {Ultramicroscopy},
    14945   volume = {86},
    14946   author = {Duscher, G. and Buczko, R. and Pennycook, S.J. and Pantelides, S.T.}
    14947 }
    14948 @article{Hytch1998,
    14949   year = {1998},
    14950   title = {Quantitative measurement of displacement and strain fields from HREM micrographs},
    14951   pages = {131-146},
    14952   journal = {Ultramicroscopy},
    14953   volume = {74},
    14954   author = {Hytch, M.J. and Snoeck, E. and Kilaas, R.}
    14955 }
    14956 @article{Lazar2006,
    14957   year = {2006},
    14958   title = {Enhancement of resolution in core-loss and low-loss spectroscopy in a monochromated microscope},
    14959   pages = {1091-1103},
    14960   journal = {Ultramicroscopy},
    14961   volume = {106},
    14962   author = {Lazar, S. and Botton, G.A. and Zandbergen, H.W.}
    14963 }
    14964 @article{Bullogh1999,
    14965   year = {1999},
    14966   title = {The Projection Structure of the Low Temperature K Intermediate of the Bacteriorhodopsin Photocycle D etermined by Electron Diffraction},
    14967   pages = {1663-1671},
    14968   journal = {Journal of Molecular Biology},
    14969   volume = {286},
    14970   author = {Bullough, P.A. and Henderson, R.}
    14971 }
    14972 @article{Rohde2005,
    14973   year = {2005},
    14974   title = {Estimating intensity variance due to noise in registered images: Applications to diffusion tensor {MRI}},
    14975   pages = {673-684},
    14976   journal = {NeuroImage},
    14977   volume = {26},
    14978   author = {Rohde, G.K. and Barnett, A.S. and Basser, P.J. and Pierpaoli, C.}
    14979 }
    14980 @article{Lichte2008a,
    14981   year = {2008},
    14982   title = {Electron holography - basics and applications},
    14983   pages = {1-43},
    14984   journal = {Reports on Progress in Physics},
    14985   author = {Lichte, H. and Lehmann, M.}
    14986 }
    14987 @article{HohmannMarriott2009,
    14988   number = {10},
    14989   year = {2009},
    14990   title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography},
    14991   pages = {729-732},
    14992   journal = {Nature Methods},
    14993   volume = {6},
    14994   author = {Hohmann-Marriott, M.F. and Sousa, A.A. and Azari, A.A. and Glushakova, S. and Zhang, G. and Zimmerberg, J. and Leapmann, R.D.}
    14995 }
    14996 @article{Sawada2009a,
    14997   year = {2009},
    14998   title = {STEM imaging of 47-pm-separated atomic columns by a spherical aberration-corrected electron microscope with a 300-kV cold field emission gun},
    14999   pages = {357-361},
    15000   journal = {Journal of electron microscopy},
    15001   volume = {58},
    15002   author = {Sawada, H. and Tanishiro, Y. and Ohashi, N. and Tomita, T. and Hosokawa, F. and Kaneyama, T. and Kondo, Y. and Takayanagi, K.}
    15003 }
    15004 @article{Kim1997,
    15005   year = {1997},
    15006   title = {Energy distributions of Zr/O/W Schottky electron emission},
    15007   pages = {461-465},
    15008   journal = {Journal of Applied Physics},
    15009   volume = {81},
    15010   author = {Kim, H.S. and Yu, M.L. and Thomson, M.G.R. and Kratchmer, E. and Chang, T.H.P.}
    15011 }
    15012 @article{Baldock2002,
    15013   year = {2002},
    15014   title = {Three-dimensional reconstructions of extracellular matrix polymers using automated electron tomography},
    15015   pages = {130-136},
    15016   journal = {Journal of Structural Biology},
    15017   volume = {138},
    15018   author = {Baldock, C. and Gilpin, C.J. and Koster, A.J. and Ziese, U. and Kadler, K.E. and Kielty, C.M. and Holmes, D.F.}
    15019 }
    15020 @article{Grigorieff1996,
    15021   year = {1996},
    15022   title = {Electron-crystallographic Refinement of the Structure of Bacteriorhopdopsin},
    15023   pages = {393-421},
    15024   journal = {Journal of Molecular Biology},
    15025   volume = {259},
    15026   author = {Grigorieff, N. and Ceska, T.A. and Downing, K.H. and Baldwin, J.M. and Henderson, R.}
    15027 }
    15028 @article{Heel1987,
    15029   year = {1987},
    15030   title = {Similarity measures between images},
    15031   pages = {95-100},
    15032   journal = {Ultramicroscopy},
    15033   volume = {21},
    15034   author = {Heel, M. van}
    15035 }
    15036 @article{Akase2010,
    15037   year = {2010},
    15038   title = {In situ Lorentz microscopy in an alternating magnetic field},
    15039   pages = {1-75},
    15040   journal = {Journal of Electron Microscopy},
    15041   author = {Akase, Z. and Shindo, D.}
    15042 }
    15043 @article{Xiong2009,
    15044   year = {2009},
    15045   title = {CTF determination and correction for low dose tomographic tilt series},
    15046   pages = {378-387},
    15047   journal = {Journal of Structural Biology},
    15048   volume = {168},
    15049   author = {Xiong, Q. and Morphew, M.K. and Schwartz, C.L. and Hoenger, A.H. and Mastronarde, D.N.}
    15050 }
    15051 @article{Unser1987,
    15052   year = {1987},
    15053   title = {A new resolution criterion based on spectral signal-to-noise ratio},
    15054   pages = {39-52},
    15055   journal = {Ultramicroscopy},
    15056   volume = {23},
    15057   author = {Unser, M. and Trus, B.L. and Steven, A.C.}
    15058 }
    15059 @article{Morniroli2007,
    15060   year = {2007},
    15061   title = {LACDIF, a new electron diffraction technique obtained with the LACBED configuration and a Cs corrector: Comparison with electron precession},
    15062   pages = {100-115},
    15063   journal = {Ultramicroscopy},
    15064   volume = {108},
    15065   author = {Morniroli, J.P. and Houdellier, F. and Roucau, C. and Puiggali, J. and Gesti, S. and Redjaimia, A.}
    15066 }
    15067 @article{Fu1999,
    15068   year = {1999},
    15069   title = {Yeast {RNA} Polymerase {II} at 5{\AA} Resolution},
    15070   pages = {799-810},
    15071   journal = {Cell},
    15072   volume = {98},
    15073   author = {Fu, J. and Gnatt, A.L. and Bushnell, D.A. and Jensen, G.J. and Thompson, N.E. and Burgess, R.R. and David, P.R. and Kornberg, R.D.}
    15074 }
    15075 @article{Stadelmann1987,
    15076   year = {1987},
    15077   title = {{EMS} - {A} software package for electron diffration analysis and {HREM} image simulation in material science},
    15078   pages = {131-146},
    15079   journal = {Ultramicroscopy},
    15080   volume = {21},
    15081   author = {Stadelmann, P.A.}
    15082 }
    15083 @inproceedings{Pennycook2003a,
    15084   series = {AIP Conference},
    15085   year = {2003},
    15086   title = {Transmission Electron Microscopy: Overview and Challenges},
    15087   booktitle = {Characterization and Metrology for ULSI Technology},
    15088   pages = {627},
    15089   volume = {683},
    15090   publisher = {American Institute of Physics},
    15091   author = {Pennycook, S.J. and Lupini, A.R. and Borisevich, A. and Varela, M. and Peng, Y. and Nellist, P.D. and Duscher, G. and Buczko, R. and Pantelides, S.T.}
    15092 }
    15093 @article{Ronchi1961,
    15094   year = {1961},
    15095   title = {Resolving power of calculates and detected images},
    15096   pages = {458-460},
    15097   journal = {Journal of the Optical Society of America},
    15098   volume = {51},
    15099   author = {Ronchi, V.}
    15100 }
    15101 @article{Philippsen2007,
    15102   year = {2007},
    15103   title = {The contrast-imaging function for tilted specimens},
    15104   pages = {202-212},
    15105   journal = {Ultramicroscopy},
    15106   volume = {107},
    15107   author = {Philippsen, A. and Engel, H.-A. and Engel, A.}
    15108 }
    15109 @article{Haurauz1986,
    15110   year = {1986},
    15111   title = {Exact filters for general geometry three dimensional reconstruction},
    15112   pages = {146-156},
    15113   journal = {Optik},
    15114   volume = {78},
    15115   author = {Haurauz, G. and Heel, M. van}
    15116 }
    15117 @article{Walther2006,
    15118   year = {2006},
    15119   title = {First experimental test of a new monochromated and aberration-corrected 200 {kV} field-emission scanning transmission electron microscope},
    15120   pages = {963-969},
    15121   journal = {Ultramicroscopy},
    15122   volume = {106},
    15123   author = {Walther, T. and Quandt, E. and Stegmann, H. and Thesen, A. and Benner, G.}
    15124 }
    15125 @article{Muller2006a,
    15126   year = {2006},
    15127   title = {Advancing the Hexapole Cs-Corrector for the Scanning Transmission Electron Microscope},
    15128   pages = {442-455},
    15129   journal = {Microscopy and Microanalysis},
    15130   volume = {12},
    15131   author = {{M\"uller}, H. and Uhlemann, S. and Hartel, P. and Haider, M.}
    15132 }
    15133 @article{Aoyama2008,
    15134   year = {2008},
    15135   title = {STEM tomography for thick biological specimens},
    15136   pages = {70-80},
    15137   journal = {Ultramicroscopy},
    15138   volume = {109},
    15139   author = {Aoyama, K. and takagi, T. and Hirase, A. and Miyazawa, A.}
    15140 }
    15141 @techreport{Zande2004,
    15142   number = {PR-TN-2004/00608},
    15143   year = {2004},
    15144   title = {Aberration analysis in electron microscopy ({T}heory)},
    15145   type = {Technical Note},
    15146   address = { Eindhoven, The Netherlands},
    15147   institution = {Philips Research},
    15148   author = {Zande, M.J. van der and Kok, C.}
    15149 }
    15150 @article{Shibata2004,
    15151   year = {2004},
    15152   title = {Observation of rare-earth segregation in silicon nitride ceramics at subnanometre dimensions},
    15153   pages = {730-734},
    15154   journal = {Nature},
    15155   volume = {428},
    15156   author = {Shibata, N. and Pennycook, S.J. and Gosnell, T.R. and Painter, G.S. and Shelton, W.A. and Becher, P.F.}
    15157 }
    15158 @article{DeRosier1999,
    15159   year = {1999},
    15160   title = {Averaging Data Derived from Images of Helical Structures with Different Symmetries},
    15161   pages = {159-165},
    15162   journal = {Journal of Molecular Biology},
    15163   volume = {289},
    15164   author = {DeRosier, D. and Stokes, D.L. and Darst, S.A.}
    15165 }
    15166 @article{Crozier2006,
    15167   year = {2006},
    15168   title = {Book review: Transmission Electron Energy Loss Spectrometry in Materials Science and the EELS Atlas},
    15169   pages = {332},
    15170   journal = {Micron},
    15171   volume = {38},
    15172   author = {Crozier, P.A.}
    15173 }
    15174 @article{Carlo2002,
    15175   year = {2002},
    15176   title = {Cryo-negative staining reduces electron-beam sensitivity of vitrified biological particles},
    15177   pages = {216-222},
    15178   journal = {Journal of Structural Biology},
    15179   volume = {138},
    15180   author = {Carlo, S. de and El-Bez, C. and Alvarez-Rua, C. and Borge, J. and Dubochet, J.}
    15181 }
    15182 @inproceedings{Tiemeijer1999a,
    15183   series = {Electron Microscopy and Analysis Group Conference EMAG99},
    15184   year = {1999},
    15185   title = {Operation modes of a {TEM} monochromator},
    15186   pages = {191-196},
    15187   volume = {161},
    15188   address = {Sheffiled, UK},
    15189   publisher = {IOP Publishing Ltd},
    15190   author = {Tiemeijer, P.C.}
    15191 }
    15192 @article{Thust2009,
    15193   year = {2009},
    15194   title = {High-Resolution Transmission Electron Microscopy on an Absolute Contrast Scale},
    15195   pages = {220801},
    15196   journal = {Physical Review Letters},
    15197   volume = {102},
    15198   author = {Thust, A.}
    15199 }
    15200 @article{Suenaga2009,
    15201   year = {2009},
    15202   title = {Visualizing and identifying single atoms using electron energy-loss spectroscopy with low accelerating voltage},
    15203   pages = {1-4},
    15204   journal = {Nature Chemistry},
    15205   author = {Suenaaga, K. and Sato, Y. and Liu, Z. and kataura, H. and Okazaki, T. and Kimoto, K. and Sawada, H. and Sasaki, T. and Omoto, K. and Kaneyama, T. and Kondo, Y.}
    15206 }
    15207 @article{Hill2008,
    15208   year = {2008},
    15209   title = {The ALIS He ion source and its application to high resolution microscopy},
    15210   pages = {135-141},
    15211   journal = {Physics Procedia},
    15212   volume = {1},
    15213   author = {Hill, R.and Notte, J. and Ward, B.}
    15214 }
    15215 @article{Hohn2007,
    15216   year = {2007},
    15217   title = {SPARX, a new environment for Cryo-EM image processing},
    15218   pages = {47-55},
    15219   journal = {Journal of Strcutural Biology},
    15220   volume = {157},
    15221   author = {Hohn, M. and Tang, G. and Goodyear, G. and Baldwin, P.R. and Huang, Z. and Penczek, P.A. and Yang, C. and Glaeser, R.M. and Adama, P.D. and Ludtke, S.J.}
    15222 }
    15223 @article{Tang2007,
    15224   year = {2007},
    15225   title = {EMAN2: An extensible image processing suite for electron microscopy},
    15226   pages = {38-46},
    15227   journal = {Journal of Strcutural Biology},
    15228   volume = {157},
    15229   author = {Tang, G. and Peng, L. and Baldwin, P.R. and Mann, D.S. and Jiang, W. and Rees, I. and Ludtke, S.J.}
    15230 }
    15231 @article{Krivanek2009,
    15232   year = {2009},
    15233   title = {High-energy resolution monochromator for aberration-corrected scanning transmission electron microscopy/electron energy-loss spectroscopy},
    15234   pages = {3683-3697},
    15235   journal = {Philosophical Transactions of the Royal Society},
    15236   volume = {367},
    15237   author = {Krivanek, O.L. and Ursin, J.P. and Bacon, N.J. and Corbin, G.J. and Delby, N. and Hrncirik, P. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.}
    15238 }
    15239 @article{Krivanek2008,
    15240   year = {2008},
    15241   title = {An electron microscope for the aberration-corrected era},
    15242   pages = {179-195},
    15243   journal = {Ultramicroscopy},
    15244   volume = {108},
    15245   author = {Krivanek, O.L. and Corbin, G.K. and Dellby, N. and Elston, B.F. and Keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S. and Woodruff,J.W.}
    15246 }
    15247 @article{Gunawan2009,
    15248   year = {2009},
    15249   title = {Locating La atoms in epitaxial $Bi_{3.25}La_{0.75}Ti_3O_{12}$ films through atomic resolution electron energy loss spectroscopy mapping},
    15250   pages = {192902},
    15251   journal = {Applied Physics Letters},
    15252   volume = {95},
    15253   author = {Gunawan, L. and Lazar, S. and Gautreau, O. and Narnagea, C. and Pignolet, A. and Botton, G.A.}
    15254 }
    15255 @misc{Krivanek2001,
    15256   year = {2001},
    15257   title = {Autoadjusting charged-particle probe-forming apparatus},
    15258   note = {pending},
    15259   howpublished = {EP application number: 01308443.9},
    15260   author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.},
    15261   organization = {NION}
    15262 }
    15263 @article{Cox1986,
    15264   year = {1986},
    15265   title = {Information capacity and resolution in an optical system},
    15266   pages = {1152-1158},
    15267   journal = {Journal of the Optical Society of America A},
    15268   volume = {3},
    15269   author = {Cox, I.J. and Sheppard, C.J.R.}
    15270 }
    15271 @article{Downing2004,
    15272   year = {2004},
    15273   title = {Experimental characterization and mitigation of specimen charging on thin films with one conducting layer},
    15274   pages = {783-789},
    15275   journal = {Microscopy and Microanalysis},
    15276   volume = {10},
    15277   author = {Downing, K.H. and McCartney, M.R. and Glaeder, R.M.}
    15278 }
    15279 @article{Hohenstein1992,
    15280   year = {1992},
    15281   title = {Single Sideband Imagin in High-Resolution Electron Microscopy},
    15282   pages = {485-492},
    15283   journal = {Applied Physics A},
    15284   volume = {54},
    15285   author = {Hohenstein, M.}
    15286 }
    15287 @article{Mitsuishi2006,
    15288   year = {2006},
    15289   title = {Ultrahigh-Vacuum Third-Order Spherical Aberration (Cs) Corrector for a Scanning Transmission Electron Microscope},
    15290   pages = {1-5},
    15291   journal = {Microscopy and Microanalysis},
    15292   volume = {12},
    15293   author = {Mitsuishi, K. and Takeguchi, M. and Kondo, Y. and Hosokawa, F. and Okamoto, K. and Sannomiva, T. and Hori, M. and Iwama, T.}
    15294 }
    15295 @article{Koster1987,
    15296   year = {1987},
    15297   title = {An autofocus method for a {TEM}},
    15298   pages = {209-222},
    15299   journal = {Ultramicroscopy},
    15300   volume = {21},
    15301   author = {Koster, A.J. and Bos, A. van den and Mast, K.D. van der}
    15302 }
    15303 @article{Egerton2003,
    15304   year = {2003},
    15305   title = {New techniques in electron energy-loss spectroscopy and energy-filtered imaging},
    15306   pages = {127-139},
    15307   journal = {Micron},
    15308   volume = {34},
    15309   author = {Egerton, R.F.}
    15310 }
    15311 @article{Egerton2004,
    15312   year = {2004},
    15313   title = {Radiation damage in the TEM and SEM},
    15314   pages = {399-409},
    15315   journal = {Micron},
    15316   volume = {35},
    15317   author = {Egerton, R.F. and Li, P. and Malac, M.}
    15318 }
    15319 @article{Egerton2007,
    15320   year = {2007},
    15321   title = {Limits to the spatial, energy and momentum resolution of electron energy-loss spectroscopy},
    15322   pages = {575-586},
    15323   journal = {Ultramicroscopy},
    15324   volume = {107},
    15325   author = {Egerton, R.F.}
    15326 }
    15327 @article{Egerton2009,
    15328   year = {2009},
    15329   title = {Electron energy-loss spectroscopy in the TEM},
    15330   pages = {016502},
    15331   journal = {Reports on Progress in Physics},
    15332   volume = {72},
    15333   author = {Egerton, R.F.}
    15334 }
    15335 @article{Baldwin1988,
    15336   year = {1988},
    15337   title = {Images of purple membrane at 2.8{\AA} resolution obtained by cryo-electron microscopy},
    15338   pages = {585-591},
    15339   journal = {Journal of Molecular Biology},
    15340   volume = {202},
    15341   author = {Baldwin, J.M. and Henderson, R. and Backman, E. and Zemlin, F.}
    15342 }
    15343 @article{Zhang2008,
    15344   number = {6},
    15345   year = {2008},
    15346   title = {Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction},
    15347   pages = {1867-1872},
    15348   journal = {Proceedings of the National Academy of Science of America},
    15349   volume = {105},
    15350   author = {Zhang, X. and Settembre, E. and Xu. Chen, Dormitzer, P.R. and Bellamy, R. and Harrison, S.C. and Grigorieff, N.}
    15351 }
    15352 @article{Downing1979,
    15353   year = {1979},
    15354   title = {Possibilities of heavy atom discrimination using single-sideband techniques},
    15355   pages = {13-31},
    15356   journal = {Ultramicroscopy},
    15357   volume = {4},
    15358   author = {Downing, K.H.}
    15359 }
    15360 @article{Zheng2007,
    15361   year = {2007},
    15362   title = {Automated acquisition of electron microscopic random conical tilt sets},
    15363   pages = {148-155},
    15364   journal = {Journal of Strcutural Biology},
    15365   volume = {157},
    15366   author = {Zheng, S.Q. and Kollman, J.M. and Braunfeld, M.B. and Sedat, J.W. and Agard, D.A.}
    15367 }
    15368 @article{Eyidi2006,
    15369   year = {2006},
    15370   title = {Short note on parallel illumination in the {TEM}},
    15371   pages = {1144-1149},
    15372   journal = {Ultramicroscopy},
    15373   volume = {106},
    15374   author = {Eyidi, D. and Hebert, C. and Schattschneider, P.}
    15375 }
    15376 @article{Mallick2005,
    15377   year = {2005},
    15378   title = {ACE: Automated CTF Estimation},
    15379   pages = {8-29},
    15380   journal = {Ultramicroscopy},
    15381   volume = {104},
    15382   author = {Mallick, S.P. and Carragher, B. and Potter, C.S. and Kriegman, D.J.}
    15383 }
    15384 @article{Liu2009,
    15385   year = {2009},
    15386   title = {Off-axis emission properties for the extended Schottky electron source},
    15387   pages = {2547-2552},
    15388   journal = {J. Vac. Sci. Technol. B},
    15389   volume = {27},
    15390   author = {Liu, K. and Schwind, G.A. and Swanson, L.W.}
    15391 }
    15392 @article{Kirkland1987,
    15393   year = {1987},
    15394   title = {Simulation of annular dark field {STEM} images using a modified mutlislice method},
    15395   pages = {77-96},
    15396   journal = {Ultramicroscopy},
    15397   volume = {23},
    15398   author = {Kirkland, E.J. and Loane, R.F. and Silcox, J.}
    15399 }
    15400 @article{Sigworth1998,
    15401   year = {1998},
    15402   title = {A Maximum-Likelihood Approach to Single-Particle Image Refinement},
    15403   pages = {328-339},
    15404   journal = {Journal of Structural Biology},
    15405   volume = {122},
    15406   author = {Sigworth, F.J.}
    15407 }
    15408 @article{Harada2004,
    15409   number = {17},
    15410   year = {2004},
    15411   title = {Double-biprism electron interferometry},
    15412   pages = {3219-3231},
    15413   journal = {Applied Physics Letters},
    15414   volume = {84},
    15415   author = {Harada, K. and Akashi, T. and Togawa, Y. and Matsuda, T.}
    15416 }
    15417 @article{Mooney2007,
    15418   year = {2007},
    15419   title = {Optimization of Image Collection for Cellular Electron Microscopy},
    15420   pages = {661-719},
    15421   journal = {Methods in cell biology},
    15422   volume = {79},
    15423   author = {Mooney, P..}
    15424 }
    15425 @article{Brarnova1999,
    15426   year = {2004},
    15427   title = {The optics of round and multipole electrostatic lenses},
    15428   pages = {1-207},
    15429   journal = {Advances in electronics and electron physics},
    15430   volume = {76},
    15431   author = {Baranova, L.A. and Yavor, S.Y.}
    15432 }
    15433 @article{Kuramochi2008,
    15434   year = {2008},
    15435   title = {Measurement of twofold astigmatism of probe-forming lens using low-order zone-axis ronchigram},
    15436   pages = {339-345},
    15437   journal = {Ultramicroscopy},
    15438   volume = {108},
    15439   author = {Kurmochi, K. and Yamazaki, T. and Kotaka, Y. and Kikuchi, Y. and Hashimoto, I. and Watanabe, K.}
    15440 }
    15441 @article{Kuramochi2009,
    15442   year = {2009},
    15443   title = {Effect of chromatic aberration on atomic-resolved spherical aberration corrected STEM images},
    15444   pages = {36-42},
    15445   journal = {Ultramicroscopy},
    15446   volume = {110},
    15447   author = {Kurmochi, K. and Yamazaki, T. and Kotaka, Y. and Ohtsuka, M. and Hashimoto, I. and Watanabe, K.}
    15448 }
    15449 @article{Crewe1980,
    15450   year = {1980},
    15451   title = {The physics of the high-resolution scanning microscope},
    15452   pages = {621-642},
    15453   journal = {Rep. Prog. Phys.},
    15454   volume = {43},
    15455   author = {Crewe, A.V.}
    15456 }
    15457 @article{Haider2008,
    15458   year = {2008},
    15459   title = {Present and Future Hexapole Aberration Correctors for High-Resolution Electron Microscopy},
    15460   pages = {43-119},
    15461   journal = {Advances in Imaging and Electron Physics},
    15462   volume = {153},
    15463   author = {Haider, M. and Mueller, H. and Uhlemann, S.}
    15464 }
    15465 @article{Pogany1968,
    15466   year = {1968},
    15467   title = {Reciprocity in Electron Diffraction and Microscopy},
    15468   pages = {103-109},
    15469   journal = {Acta Crystallography A},
    15470   volume = {24},
    15471   author = {Pogany, A.P. and Turner, P.S.}
    15472 }
    15473 @article{Sasaki2010,
    15474   year = {2010},
    15475   title = {Performance of low-voltage STEM/TEM with delta corrector and cold field emission gun},
    15476   journal = {Journal of Electron Microscopy},
    15477   author = {Sasaki, T. and Sawada, H. and Hosokawa, F. and Kohno, Y. and Tomita, T. and Kaneyama, T. and Kondo, Y. and Kimoto, K. and Sato, Y. and Suenaga, K.}
    15478 }
    15479 @article{Muller2008,
    15480   year = {2008},
    15481   title = {Atomic-Scale Chemical Imaging of Composition and Bonding by Aberration-Corrected Microscopy},
    15482   pages = {1073-1076},
    15483   journal = {Science},
    15484   volume = {319},
    15485   author = {Muller, D.A. and Fitting Kourkoutis, L. and Murfitt, M. and Song, J.H. and Hwang, H.Y. and Silcox, J. and Dellby, N. and Krivanek, O.L.}
    15486 }
    15487 @article{Meyer2008,
    15488   year = {2008},
    15489   title = {Imaging and dynamics of light atoms and molecules on graphene},
    15490   pages = {319-323},
    15491   journal = {Nature},
    15492   volume = {454},
    15493   author = {Meyer, J.C. and Girit, C.O. and Crommie, M.F. and Zettl, A.}
    15494 }
    15495 @article{Muller2006,
    15496   year = {2006},
    15497   title = {Room design for high-performance electron microscopy},
    15498   pages = {1033-1040},
    15499   journal = {Ultramicroscopy},
    15500   volume = {106},
    15501   author = {Muller, D.A. and Kirkland, E.J. and Thomas, M.G. and Grazul, J.L. and Fitting, L. and Weyland, M.}
    15502 }
    15503 @article{Xing2009,
    15504   year = {2009},
    15505   title = {A rapid method to correct objective lens astigmatism in a TEM},
    15506   pages = {287-290},
    15507   journal = {Ultramicroscopy},
    15508   volume = {109},
    15509   author = {Xing, Q. and Lograsso, T.A.}
    15510 }
    15511 @article{Nellist1998a,
    15512   year = {1998},
    15513   title = {Accurate structure determination from image reconstruction in {ADF} {STEM}},
    15514   pages = {159-170},
    15515   journal = {Journal of Microscopy},
    15516   volume = {1-2},
    15517   author = {Nellist, P.D. and Pennycook, S.J.}
    15518 }
    15519 @article{Schaffer2009,
    15520   year = {2009},
    15521   title = {High-resolution surface plasmon imaging of gold nanoparticles by energy-filtered transmission electron microscopy},
    15522   pages = {041401},
    15523   journal = {Physical Review B},
    15524   volume = {79},
    15525   author = {Schaffer, B. and Hohenester, U. and Truegler, A. and Hofer, F.}
    15526 }
    15527 @inproceedings{Rieger2008,
    15528   month = {September 1-5},
    15529   year = {2008},
    15530   title = {Method to determine image sharpness and resolution
    15531 in Scanning Electron Microscopy images},
    15532   booktitle = {EMC 2008, Vol.1: Instrumentation and Methods},
    15533   pages = {613-614},
    15534   editor = {Luysberg, M. and Tillmann, K. and Weirich, T.},
    15535   address = {Berline},
    15536   publisher = {Springer Verlag},
    15537   author = {Rieger, B. and Veen, G.N.A. van}
    15538 }
    15539 @mastersthesis{Smith2009,
    15540   year = {2009},
    15541   title = {Improving single molecule
    15542 fluorescence superresolution techniques},
    15543   school = {Delft University of Technology},
    15544   author = {Smith, S.C.}
    15545 }
    15546 @mastersthesis{Vroonland2010,
    15547   month = {June},
    15548   year = {2010},
    15549   title = {Superresolution Using Blinking Emitters},
    15550   address = {Delft, The Netherlands},
    15551   school = {Delft University of Technology},
    15552   author = {Vroonland, S.}
    15553 }
    15554 @article{Hell2009,
    15555   year = {2009},
    15556   title = {Microscopy and its focal switch},
    15557   pages = {24-32},
    15558   journal = {Nature Methods},
    15559   volume = {6},
    15560   author = {Hell, S.W.}
    15561 }
    15562 @article{Small2009,
    15563   number = {2},
    15564   year = {2009},
    15565   title = {Theoretical Limits on Errors and Acquisition Rates in Localizing Switchable Fluorophores},
    15566   pages = {L16-L18},
    15567   journal = {Biophysical Journal - Biophysical Letters},
    15568   volume = {92},
    15569   author = {Small, A.R.}
    15570 }
    15571 @article{Podczeck1997,
    15572   year = {1997},
    15573   title = {A shape factor to assess the shape of particles using image analysis},
    15574   pages = {47-53},
    15575   journal = {Powder Technology},
    15576   volume = {93},
    15577   author = {Podczeck, F.}
    15578 }
    15579 @article{Shaner2004,
    15580   number = {12},
    15581   year = {2004},
    15582   title = {Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein},
    15583   pages = {1567-1672},
    15584   journal = {Nature Biotechnology},
    15585   volume = {22},
    15586   author = {Shaner, N.C. and Campbell, R.E. and Steinbach, P.A. and Giepmans, B.N.G. and Palmer, A.E. and Tsien, R.Y.}
    15587 }
    15588 @article{Sader2010,
    15589   year = {2010},
    15590   title = {Quantitative analysis of image contrast in phase contrast {STEM} for low dose imaging},
    15591   pages = {1324-1331},
    15592   journal = {Ultramicroscopy},
    15593   volume = {110},
    15594   author = {Sader, K. and Brown, A. and Brydon, R. and Bleloch, A.}
    15595 }
    15596 @article{Aert2010,
    15597   year = {2010},
    15598   title = {Linear versus non-linear structural information limit in high-resolution transmission electron microscopy},
    15599   pages = {1404-1410},
    15600   journal = {Ultramicroscopy},
    15601   volume = {110},
    15602   author = {Aert, s. van and Chen, J.H. and Dyck, D. van}
    15603 }
    15604 @article{Donzel2001,
    15605   number = {{15}},
    15606   year = {2001},
    15607   title = {{Hydrophilic Poly(dimethylsiloxane) Stamps for Microcontact Printing}},
    15608   journal = {{Advanced Materials}},
    15609   volume = {{13}},
    15610   author = {Donzel, Christian and Geissler, Matthias and Bernard, Andr\\\'e and Wolf, Heiko and Michel, Bruno and Hilborn, J\\\"ons and Delamarche, Emmanuel}
    15611 }
    15612 @article{Wang1997,
    15613   number = {{3}},
    15614   year = {1997},
    15615   title = {{Stretching DNA with Optical Tweezers}},
    15616   pages = {{1335-1346}},
    15617   journal = {{Biophysical Journal}},
    15618   volume = {{72}},
    15619   author = {Wang, Michelle D. and Yin, Hong and Landick, Robert and Gelles, Jeff and Block, Steven M.}
    15620 }
    15621 @article{Blanchard1999,
    15622   number = {{32}},
    15623   year = {1999},
    15624   title = {{Simultaneous multiplane imaging with a distorted diffraction grating}},
    15625   pages = {{6692-6699}},
    15626   journal = {{Applied Optics}},
    15627   volume = {{38}},
    15628   author = {Blanchard, Paul M.
    15629  Greenaway, Alan H.}
    15630 }
    15631 @article{Eversole2007,
    15632   year = {2007},
    15633   title = {{Plasmonic laser nanoablation of silicon by the scattering of femtosecond pulses near gold nanospheres}},
    15634   pages = {{283-291}},
    15635   journal = {{Applied Physics A}},
    15636   volume = {{89}},
    15637   author = {Eversole, D. and Luk'Yanchuk, B. and Ben-Yakar, A.}
    15638 }
    15639 @article{Dessinges2002,
    15640   number = {{24}},
    15641   year = {2002},
    15642   title = {{Stretching Single Stranded DNA, a Model Polyelectrolyte}},
    15643   pages = {{248102-248106}},
    15644   journal = {{Physical Review Letters}},
    15645   volume = {{89}},
    15646   author = {Dessinges, M. N. and Maier, B. and Zhang, Y. and Peliti, M. and Bensimon, D. and Croquette, V.}
    15647 }
    15648 @article{Taylor1990,
    15649   number = {{2}},
    15650   year = {1990},
    15651   title = {{Application of the Method of Phage T4 DNA Ligase-catalyzed Ring-closure to the Study of DNA Structure}},
    15652   pages = {{363-376}},
    15653   journal = {{Journal of Molecular Biology}},
    15654   volume = {{212}},
    15655   author = {Taylor, William H. and Hagerman, Paul J.}
    15656 }
    15657 @article{Uhlenbeck1930,
    15658   year = {1930},
    15659   title = {{On the Theory of the Brownian Motion}},
    15660   journal = {{Physical Review}},
    15661   volume = {{36}},
    15662   author = {Uhlenbeck, G.E. and Ornstein, L.S.}
    15663 }
    15664 @article{Yguerabide2001,
    15665   number = {{S37}},
    15666   year = {2001},
    15667   title = {{Resonance Light Scattering Particles as Ultrasensitive Labels for Detection of Analytes in a Wide Range of Applications}},
    15668   pages = {{71-81}},
    15669   journal = {{Journal of Cellular Biochemistry Supplement}},
    15670   volume = {{84}},
    15671   author = {Yguerabide, Juan and Yguerabide, Evangelina E.}
    15672 }
    15673 @article{Samuel2002,
    15674   year = {2002},
    15675   title = {{Elasticity of semiflexible polymers}},
    15676   pages = {{050801}},
    15677   journal = {{Physical Review E}},
    15678   volume = {{66}},
    15679   author = {Samuel, Joseph and Sinha, Supurna}
    15680 }
    15681 @article{Porschke1991,
    15682   year = {1991},
    15683   title = {{Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations}},
    15684   pages = {{169-179}},
    15685   journal = {{Biophysical Chemistry}},
    15686   volume = {{40}},
    15687   author = {Porschke, Dietmar}
    15688 }
    15689 @article{Schutz2000,
    15690   number = {{1}},
    15691   year = {2000},
    15692   title = {{3D Imaging of Individual Ion Channels in Live Cells at 40 nm Resolution}},
    15693   pages = {{25-31}},
    15694   journal = {{Single Molecules}},
    15695   volume = {{1}},
    15696   author = {Sch\\\"utz, Gerhard J. and Pastushenko, Vassili, Ph. and Gruber, Hermann J. and Knaus, Hans-G\\\"unter and Pragl, Bernt and Schindler, Hansgeorg}
    15697 }
    15698 @incollection{Vilfan2009,
    15699   year = {2009},
    15700   title = {{Magnetic Tweezers for Single-Molecule Experiments}},
    15701   booktitle = {{Springer Handbook of Single-Molecule Biophysics}},
    15702   editor = {Hinterdorfer, P. and A., van Oijen},
    15703   publisher = {{Springer Science+Business Media}},
    15704   author = {Vilfan, I.D. and Lipfert, J. and Koster, D.A. and Lemay, S.G. and Dekker, N.H.}
    15705 }
    15706 @article{Dvorak2003,
    15707   number = {{2}},
    15708   year = {2003},
    15709   title = {{Approaches to Messenger RNA Detection - Comparison of Methods}},
    15710   pages = {{131-135}},
    15711   journal = {{Biomedical Papers}},
    15712   volume = {{147}},
    15713   author = {Dvor\\\'ak, Zdenek and Pascussi, Jean-Marc and Modriansk\\\'y, Martin}
    15714 }
    15715 @article{Medalion2010,
    15716   number = {{4}},
    15717   year = {2010},
    15718   title = {{Coupling of twist and writhe in short DNA loops
    15719  }},
    15720   pages = {{045101}},
    15721   journal = {{The Journal of Chemical Physics}},
    15722   volume = {{132}},
    15723   author = {Medalion, Shlomi and Rappaport, Shay M. and Rabin, Yitzhak}
    15724 }
    15725 @article{Cherif2006,
    15726   number = {{2}},
    15727   year = {2006},
    15728   title = {{Clinically Related Protein-Peptide Interactions Monitored in Real Time on Novel Peptide Chips by Surface Plasmon Resonance Imaging}},
    15729   pages = {{255-262}},
    15730   journal = {{Clinical Chemistry}},
    15731   volume = {{52}},
    15732   author = {Cherif, Boutheina and Roget, Andr\\\'e and Villiers, Christian L. and Calemczuk, Roberto and Leroy, Vincent and Marche, Patrice N. and Livache, Thierry and Villiers, Marie-Bernadette}
    15733 }
    15734 @article{Gibson1991,
    15735   number = {{10}},
    15736   year = {1991},
    15737   title = {{Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy}},
    15738   pages = {{1601-1613}},
    15739   journal = {{Journal of the Optical Society of America A}},
    15740   volume = {{8}},
    15741   author = {Gibson, Sarah Frisken and Lanni, Frederick}
    15742 }
    15743 @misc{Bouchiat2007,
    15744   year = {2007},
    15745   title = {{Spatial Constraint Corrections to the Elasticity of dsDNA Measured with Magnetic Tweezers}},
    15746   author = {Bouchiat, C.}
    15747 }
    15748 @article{Bouchiat2006,
    15749   number = {{03}},
    15750   year = {2006},
    15751   title = {{Entropic elasticity of double-strand DNA subject to simple spatial constraints}},
    15752   pages = {{P03019}},
    15753   journal = {{Journal of Statistical Mechanics: Theory and Experiment}},
    15754   author = {Bouchiat, C.}
    15755 }
    15756 @article{Yoshinaga2002,
    15757   number = {{22}},
    15758   year = {2002},
    15759   title = {{Multiscaling in a long semiflexible polymer chain in two dimensions}},
    15760   journal = {{Journal of Chemical Physics}},
    15761   volume = {{116}},
    15762   author = {Yoshinaga, Natsuhiko and Yoshikawa, Kenichi and Kidoaki, Satoru}
    15763 }
    15764 @article{Sottas1999,
    15765   year = {1999},
    15766   title = {{Brownian Dynamics Simulation of DNA Condensation}},
    15767   pages = {{1858-1870}},
    15768   journal = {{Biophysical Journal}},
    15769   volume = {{77}},
    15770   author = {Sottas, Pierre-Edouard and Larquet, Eric and Stasiak, Andrzej and Dubochet, Jacques}
    15771 }
    15772 @article{Yamakawa1976a,
    15773   number = {{12}},
    15774   year = {1976},
    15775   title = {{Statistical mechanics of helical wormlike chains. I. Differential equations and moments}},
    15776   pages = {{5222-5228}},
    15777   journal = {{The Journal of Chemical Physics}},
    15778   volume = {{64}},
    15779   author = {Yamakawa, Hiromi and Fujii, Motoharu}
    15780 }
    15781 @article{Odijk1979,
    15782   year = {1979},
    15783   title = {{On the Ionic-Strength Dependence of the Intrinsic Viscosity of DNA}},
    15784   pages = {{3111-3113}},
    15785   journal = {{Biopolymers}},
    15786   volume = {{18}},
    15787   author = {Odijk, Theo}
    15788 }
    15789 @article{Sheppard1997,
    15790   number = {{3}},
    15791   year = {1997},
    15792   title = {{Effects of specimen refractive index on confocal imaging}},
    15793   pages = {{366-374}},
    15794   journal = {{Journal of Microscopy}},
    15795   volume = {{185}},
    15796   author = {Sheppard, C. J. R. and T\\\"or\\\"ok, P.}
    15797 }
    15798 @article{Vologodskii1994,
    15799   number = {{20}},
    15800   year = {1994},
    15801   title = {{DNA Extension under the Action of an External Force}},
    15802   pages = {{5623-5625}},
    15803   journal = {{Macromolecules}},
    15804   volume = {{27}},
    15805   author = {Vologodskii, Alexander}
    15806 }
    15807 @article{Rayleigh1919,
    15808   year = {1919},
    15809   title = {{On the problem of random vibrations, and of random flights in one, two, or three dimensions}},
    15810   pages = {{321-347}},
    15811   journal = {{Philosophical Magazine}},
    15812   volume = {{37}},
    15813   author = {Rayleigh, Lord}
    15814 }
    15815 @article{Lukic2007,
    15816   year = {2007},
    15817   title = {{Motion of a colloidal particle in an optical trap}},
    15818   pages = {{011112}},
    15819   journal = {{Physical Review E}},
    15820   volume = {{76}},
    15821   author = {{Luki\c{c}}, B. and Jeney, S. and Sviben, Z. and Kulik, A. and Florin, E.-L. and {Forr\'o}, L.}
    15822 }
    15823 @article{Storm2003a,
    15824   number = {{5}},
    15825   year = {2003},
    15826   title = {{The bend stiffness of S-DNA}},
    15827   pages = {{760-766}},
    15828   journal = {{Europhysics Letters (EPL)}},
    15829   volume = {{62}},
    15830   author = {Storm, C. and Nelson, P. C.}
    15831 }
    15832 @article{Odijk1977,
    15833   year = {1977},
    15834   title = {{Polyelectrolytes near the Rod Limit}},
    15835   pages = {{477-483}},
    15836   journal = {{Journal of Polymer Science: Polymer Physics Edition}},
    15837   volume = {{15}},
    15838   author = {Odijk, Theo}
    15839 }
    15840 @article{Beausang2007b,
    15841   year = {2007},
    15842   title = {{Diffusive hidden Markov model characterization of DNA looping dynamics in tethered particle experiments}},
    15843   journal = {{Physical Biology}},
    15844   author = {Beausang, John F. and Nelson, Philip C.}
    15845 }
    15846 @article{Fixman1973,
    15847   number = {{4}},
    15848   year = {1973},
    15849   title = {{Polymer conformational statistics. I. Probability distribution}},
    15850   pages = {{1553-1558}},
    15851   journal = {{The Journal of Chemical Physics}},
    15852   volume = {{58}},
    15853   author = {Fixman, Marshall and Alben, Richard}
    15854 }
    15855 @article{Gupta1993,
    15856   number = {{2}},
    15857   year = {1993},
    15858   title = {{Mean-field theory of phase transitions in liquid-crystalline polymers}},
    15859   pages = {{1588-1596}},
    15860   journal = {{Journal of Chemical Physics}},
    15861   volume = {{98}},
    15862   author = {Gupta, Anshu M. and Edwards, Sam F.}
    15863 }
    15864 @article{Butler2005,
    15865   year = {2005},
    15866   title = {{Brownian dynamics simulations of a flexible polymer chain which includes continuous resistance and multibody hydrodynamic interactions}},
    15867   journal = {{The Journal of Chemical Physics}},
    15868   volume = {{122}},
    15869   author = {Butler, Jason E. and Shaqfeh, Eric S.G.}
    15870 }
    15871 @article{Csiszar1991,
    15872   number = {{4}},
    15873   year = {1991},
    15874   title = {{Why Least Squares and Maximum Entropy? An Axiomatic Approach to Inference for Linear Inverse Problems}},
    15875   pages = {{2032-2066}},
    15876   journal = {{The Annals of Statistics}},
    15877   volume = {{19}},
    15878   author = {Csiszar, Imre}
    15879 }
    15880 @inproceedings{Dietrich2006,
    15881   year = {2006},
    15882   title = {{Advances in the Development of a Novel Method to be used in Proteomics using Gold Nanobeads}},
    15883   booktitle = {{Ultrasensitive and Single-Molecule Detection Technologies}},
    15884   editor = {Enderlein, J\\\"org and Gryczynski, Zygmunt K.},
    15885   volume = {{6092}},
    15886   publisher = {{Proceedings of SPIE}},
    15887   author = {Dietrich, Heidelinde R.C. and Young, Ian T. and Garini, Yuval}
    15888 }
    15889 @inproceedings{Dietrich2007,
    15890   year = {2007},
    15891   title = {A New Optical Method for Characterizing Single Molecule Interactions based on Dark Field Microscopy},
    15892   booktitle = {{Ultrasensitive and Single-Molecule Detection Technologies II}},
    15893   pages = {644403-1 - 64403-8},
    15894   editor = {Enderlein, J. and Gryczynski, Z.K.},
    15895   volume = {{6444}},
    15896   publisher = {{Proceedings of SPIE}},
    15897   author = {Dietrich, Heidelinde R.C. and Vermolen, Bart J. and Rieger, Bernd and Young, Ian T. and Garini, Yuval}
    15898 }
    15899 @article{Torok1996,
    15900   number = {{3}},
    15901   year = {1996},
    15902   title = {{Dark-field and differential phase contrast imaging modes in confocal microscopy using a half-aperture stop}},
    15903   pages = {{101-106}},
    15904   journal = {{Optik}},
    15905   volume = {{103}},
    15906   author = {T\\\"or\\\"ok, P. and Sheppard, C. J. R. and Laxzik, Z.}
    15907 }
    15908 @article{Dietrich2002,
    15909   number = {{1}},
    15910   year = {2002},
    15911   title = {{Relationship of Lipid Rafts to Transient Confinement Zones Detected by Single Particle Tracking}},
    15912   pages = {{274-284}},
    15913   journal = {{Biophysical Journal}},
    15914   volume = {{82}},
    15915   author = {Dietrich, Chrisian and Yang, Bing and Fujiwara, Takahiro and Kusumi, Akihiro and Jacobson, Ken}
    15916 }
    15917 @article{Schafer1991,
    15918   number = {{6334}},
    15919   year = {1991},
    15920   title = {{Transcription by single molecules of RNA polymerase observed by light microscopy}},
    15921   pages = {{444-448}},
    15922   journal = {{Nature}},
    15923   volume = {{352}},
    15924   author = {Schafer, Dorothy A. and Gelles, Jeff and Sheetz, Michael P. and Landick, Robert}
    15925 }
    15926 @book{Mazo2002,
    15927   series = {{International series of monographs on physics}},
    15928   year = {2002},
    15929   title = {{Brownian Motion: fluctuations, dynamics, and applications}},
    15930   address = {{Oxford}},
    15931   publisher = {{Clarendon Press}},
    15932   author = {Mazo, Robert M.}
    15933 }
    15934 @article{Deng2009,
    15935   number = {{10}},
    15936   year = {2009},
    15937   title = {{Effect of aberration on height calibration in three-dimensional localization-base microscoyp and particle tracking}},
    15938   pages = {{1886-1890}},
    15939   journal = {{Applied Optics}},
    15940   volume = {{48}},
    15941   author = {Deng, Yi. and Shaevitz, Joshua W.}
    15942 }
    15943 @article{Han2006,
    15944   year = {2006},
    15945   title = {{Brownian Motion of an Ellipsoid}},
    15946   journal = {{Science}},
    15947   volume = {{314}},
    15948   author = {Han, Y. and Alsayed, A.M. and Nobili, M. and Zhang, J. and Lubensky, T.C. and Yodh, A.G.}
    15949 }
    15950 @article{Dietrich2009,
    15951   year = {2009},
    15952   title = {Tethered Particle Motion Mediated by Scattering from Gold Nanoparticles and Darkfield Microscopy},
    15953   pages = {{031795}},
    15954   journal = {{Journal of Nanophotonics}},
    15955   volume = {{3}},
    15956   author = {Dietrich, Heidelinde R. C. and Rieger, Bernd and Wiertz, Frank G.M. and de Groote, Frederik H. and Heering, Hendrik A. and Young, Ian T. and Garini, Yuval}
    15957 }
    15958 @article{Shaevitz2007,
    15959   number = {{9}},
    15960   year = {2007},
    15961   title = {{Enhanced three-dimensional deconvolution microscopy using a measured depth-varying point-spread function}},
    15962   pages = {{2622-2627}},
    15963   journal = {{Journal of the Optical Society of America A}},
    15964   volume = {{24}},
    15965   author = {Shaevitz, Joshua W. and Fletcher, Daniel A.}
    15966 }
    15967 @book{Doi1986,
    15968   year = {1986},
    15969   title = {{The Theory of Polymer Dynamics}},
    15970   address = {{New York}},
    15971   publisher = {{Oxford University Press}},
    15972   author = {Doi, M. and Edwards, S.F. }
    15973 }
    15974 @article{Dhar2002,
    15975   number = {{6}},
    15976   year = {2002},
    15977   title = {{Triple Minima in the Free Energy of Semiflexible Polymers}},
    15978   pages = {{065502}},
    15979   journal = {{Physical Review Letters}},
    15980   volume = {{89}},
    15981   author = {Dhar, Abhishek and Chaudhuri, Debasish}
    15982 }
    15983 @article{Watkins2004,
    15984   number = {{6}},
    15985   year = {2004},
    15986   title = {{Information Bounsd and Optimal Analysis of Dynamic Single Molecule Measurements}},
    15987   pages = {{4015-4029}},
    15988   journal = {{Biophysical Journal}},
    15989   volume = {{86}},
    15990   author = {Watkins, Lucas P. and Yang, Haw}
    15991 }
    15992 @article{Elburg2007,
    15993   number = {{1}},
    15994   year = {2007},
    15995   title = {{Improved correction of axial geometrical distortion in index-mismatched fluorescent confocal microscopic images using high-aperture objective lenses}},
    15996   pages = {{45-54}},
    15997   journal = {{Journal of Microscopy}},
    15998   volume = {{228}},
    15999   author = {Elburg, H.J. van and Kuypers, L.C. and Decraemer, W.F. and Dirckx, J.J.J.}
    16000 }
    16001 @phdthesis{Li2006,
    16002   year = {2006},
    16003   title = {{DNA entropic elasticity for short molecules attached to beads}},
    16004   author = {Li, Jinyu and Nelson, Philip C. and Betterton, M.D.}
    16005 }
    16006 @book{Cohen1988,
    16007   series = {{Statistics: Textbooks and monographs}},
    16008   year = {1988},
    16009   title = {{Parameter estimation in reliability and life span models}},
    16010   volume = {{96}},
    16011   address = {{New York}},
    16012   publisher = {{Marcel Dekker, Inc}},
    16013   author = {Cohen, A. Clifford and Whitten, Betty Jones}
    16014 }
    16015 @article{Cocco2002,
    16016   year = {2002},
    16017   title = {{Theoretical models for single-molecule DNA and RNA experiments: from elasticity to unzipping}},
    16018   pages = {{569-584}},
    16019   journal = {{Comptes rendus de l'Academie des Sciences Physique}},
    16020   volume = {{3}},
    16021   author = {Cocco, S. and Marko, J.F. and Monasson, R.}
    16022 }
    16023 @article{Cocco2003,
    16024   year = {2003},
    16025   title = {{Force-extension behavior of folding polymers}},
    16026   pages = {{249-263}},
    16027   journal = {{The European Physical Journal E}},
    16028   volume = {{10}},
    16029   author = {Cocco, S. and Marko, J.F. and Monasson, R. and Sarkar, A. and Yan, J.}
    16030 }
    16031 @article{Hughes2001,
    16032   year = {2001},
    16033   title = {{DNA microarrays for expression profiling}},
    16034   pages = {{21-25}},
    16035   journal = {{Current Opinion in Chemical Biology}},
    16036   volume = {{5}},
    16037   author = {Hughes, Timothy R. and Shoemaker, Daniel D.}
    16038 }
    16039 @article{Tinland1997,
    16040   number = {{19}},
    16041   year = {1997},
    16042   title = {{Persistence Length of Single-Stranded DNA}},
    16043   pages = {{5763-5765}},
    16044   journal = {{Macromolecules}},
    16045   volume = {{30}},
    16046   author = {Tinland, Bernard and Pluen, Alain and Sturm, Jean and Weill, Gilbert}
    16047 }
    16048 @article{Massey1951,
    16049   year = {1951},
    16050   title = {{The Kolmogorov-Smirnov test for goodness of fit}},
    16051   pages = {{68-78}},
    16052   journal = {{Journal of the American Statistical Association}},
    16053   volume = {{46}},
    16054   author = {Massey, Frank J., Jr.}
    16055 }
    16056 @article{Burkhardt1993,
    16057   year = {1993},
    16058   title = {{Semiflexible polymer in the half plane and statistics of the integral of a Brownian curve}},
    16059   pages = {{L1157-L1162}},
    16060   journal = {{Journal of Physics A: Mathematical and General}},
    16061   volume = {{26}},
    16062   author = {Burkhardt, Theodore W.}
    16063 }
    16064 @article{Stepanow2002,
    16065   number = {{4}},
    16066   year = {2002},
    16067   title = {{The distribution function of a semiflexible polymer and random walks with constraints}},
    16068   pages = {{546-551}},
    16069   journal = {{Europhysics Letters (EPL)}},
    16070   volume = {{60}},
    16071   author = {Stepanow, S. and Sch\\\"utz, G. M.}
    16072 }
    16073 @article{Smith1992,
    16074   number = {{5085}},
    16075   year = {1992},
    16076   title = {{Direct Mechanical Measurement of the Elasticity of Single DNA Molecules by Using Magnetic Beads}},
    16077   pages = {{1122-1126}},
    16078   journal = {{Science}},
    16079   volume = {{258}},
    16080   author = {Smith, Steven B. and Finzi, Laura and Bustamante, Carlos}
    16081 }
    16082 @article{Bao2002,
    16083   number = {{8}},
    16084   year = {2002},
    16085   title = {{High-Sensitivity Detection of DNA Hybridization on Microarrays Using Resonance Light Scattering}},
    16086   pages = {{1792-1979}},
    16087   journal = {{Analytical Chemistry}},
    16088   volume = {{74}},
    16089   author = {Bao, Paul and Frutor, Anthony G. and Greef, Charles and Lahiri, Joydeep and Muller, Uwe and Peterson, Todd C. and Warden, Laurence and Xie, Xinying}
    16090 }
    16091 @article{Baumann1997,
    16092   year = {1997},
    16093   title = {{Ionic effects on the elasticity of single DNA molecules}},
    16094   pages = {{6185-6190}},
    16095   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16096   volume = {{94}},
    16097   author = {Baumann, Christoph G. and Smith, Steven B. and Bloomfield, Victor A. and Bustamante, Carlos}
    16098 }
    16099 @article{Vandenberg1991,
    16100   number = {{1}},
    16101   year = {1991},
    16102   title = {{Structure of 3-aminopropyl triethoxy silane on silicon oxide}},
    16103   pages = {{103-118}},
    16104   journal = {{Journal of Colloid and Interface Science}},
    16105   volume = {{147}},
    16106   author = {Vandenberg, Elaine T. and Bertilsson, Lars and Liedberg, Bo and Uvdal, Kajsa and Erlandsson, Ragnar and Elwing, Hans and Lundstrom, Ingemar}
    16107 }
    16108 @article{Blumberg2005,
    16109   year = {2005},
    16110   title = {{Three-Dimensional Characterization of Tethered Microspheres by Total Internal Reflection Fluorescence Microscopy}},
    16111   pages = {{1272-1281}},
    16112   journal = {{Biophysical Journal}},
    16113   volume = {{89}},
    16114   author = {Blumberg, Seth and Gajraj, Arivalagan and Pennington, Matthew W.}
    16115 }
    16116 @misc{Neumann2001,
    16117   month = {January 22, 2001},
    16118   year = {2001},
    16119   title = {{Entropic Elasticity of Weakly Perturbed Polymers}},
    16120   pages = {11},
    16121   publisher = {{The Energy Institute, The Pennsylvania State University}},
    16122   author = {Neumann, Richard M.}
    16123 }
    16124 @article{Ommering2010,
    16125   number = {{15}},
    16126   year = {2010},
    16127   title = {{Mobility and height detection of particle labels in an optical evanescent wave biosensor with single-label resolution}},
    16128   pages = {{155501}},
    16129   journal = {{Journal of Physics D: Applied Physics}},
    16130   volume = {{43}},
    16131   author = {van Ommering, Kim and Somers, Philip A. and Koets, Marjo and Schleipen, Jean J.H.B. and van Ijzendoorn, Leo J. and Prins, Menno W.J.}
    16132 }
    16133 @article{Heaton2001,
    16134   number = {{7}},
    16135   year = {2001},
    16136   title = {{Electrostatic surface plasmon resonance: Direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches}},
    16137   pages = {{3701-3704}},
    16138   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16139   volume = {{98}},
    16140   author = {Heaton, Richard J. and Peterson, Alexander W. and Georgiadis, Rosina M.}
    16141 }
    16142 @article{Gobush1972,
    16143   number = {{7}},
    16144   year = {1972},
    16145   title = {{Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior}},
    16146   pages = {{2839-2843}},
    16147   journal = {{The Journal of Chemical Physics}},
    16148   volume = {{57}},
    16149   author = {Gobush, William and Yamakawa, Hiromi and Stockmayer, W. H. and Magee, W. S.}
    16150 }
    16151 @article{Henderson2001,
    16152   number = {{4}},
    16153   year = {2001},
    16154   title = {{Exploring the Confidence Interval for a Binomial Parameter in a First Course in Statistical Computing}},
    16155   pages = {{337-344}},
    16156   journal = {{The American Statistician}},
    16157   volume = {{55}},
    16158   author = {Henderson, Michael and Meyer, Mary C.}
    16159 }
    16160 @article{Winkler1994,
    16161   number = {{9}},
    16162   year = {1994},
    16163   title = {{Models and equilibrium properties of stiff molecular chains}},
    16164   pages = {{8119-8129}},
    16165   journal = {{journal of Chemical Physics}},
    16166   volume = {{101}},
    16167   author = {Winkler, Roland G. and Reineker, Peter and Harnau, Ludger}
    16168 }
    16169 @article{William1972,
    16170   number = {{7}},
    16171   year = {1972},
    16172   title = {{Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior}},
    16173   pages = {{2839-2843}},
    16174   journal = {{The Journal of Chemical Physics}},
    16175   volume = {{57}},
    16176   author = {William, Gobush and Hiromi, Yamakawa and Stockmayer, W. H. and Magee, W. S.}
    16177 }
    16178 @article{Peterlinz1997,
    16179   year = {1997},
    16180   title = {{Observation of Hybridization and Dehybridization of Thiol-Tethered DNA Using Two-Color Surface Plasmon Resonance Spectroscopy}},
    16181   pages = {{3401-3402}},
    16182   journal = {{Journal of the American Chemical Society}},
    16183   volume = {{119}},
    16184   author = {Peterlinz, Kevin A. and Georgiadis, Rosina M. and Herne, Tonya M. and Tarlov, Michael J.}
    16185 }
    16186 @article{Morriss2010,
    16187   number = {{3}},
    16188   year = {2010},
    16189   title = {{A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality}},
    16190   pages = {{035105}},
    16191   journal = {{The Journal of Chemical Physics}},
    16192   volume = {{132}},
    16193   author = {Morriss-Andrews, Alex and Rottler, Joerg and Plotkin, Steven S.}
    16194 }
    16195 @article{Chandrasekhar1943,
    16196   number = {{1}},
    16197   year = {1943},
    16198   title = {{Stochastic Problems in Physics and Astronomy}},
    16199   pages = {{2-87}},
    16200   journal = {{Revieuws of Modern Physics}},
    16201   volume = {{15}},
    16202   author = {Chandrasekhar, S.}
    16203 }
    16204 @inproceedings{Ram2005,
    16205   series = {{Proceedings of SPIE}},
    16206   year = {2005},
    16207   title = {{How accurately can a single molecule be localized in three dimensions using a fluorescence microscope?}},
    16208   booktitle = {{Imaging, Manipulation and Analysis of Biomolecule and Cells: Fundamentals and Applications III}},
    16209   pages = {426-435},
    16210   volume = {{5699}},
    16211   author = {Ram, Sripad and Ward, E. Sally and Ober, Raimond J.}
    16212 }
    16213 @book{Papoulis1991,
    16214   series = {{McGraw-Hill series in electrical engineering, Communications and signal processing}},
    16215   edition = {{Third edition}},
    16216   year = {1991},
    16217   title = {{Probability, random variables, and stochastic processes}},
    16218   address = {{Singapore}},
    16219   publisher = {{McGraw-Hill}},
    16220   author = {Papoulis, Athanasios}
    16221 }
    16222 @inproceedings{Ram2007,
    16223   year = {2007},
    16224   title = {{A novel approach to determining the three-dimensional location of microscopic objects with applications to 3D particle tracking}},
    16225   booktitle = {{Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIV}},
    16226   pages = {64430D},
    16227   editor = {Conchello, Jose-Angel and Cogswell, Carol J. and Wilson, Tony},
    16228   volume = {{6443}},
    16229   publisher = {{Proceedings of SPIE}},
    16230   author = {Ram, Sripad and Chao, Jerry and Prabhat, Prashant and Ward, E. Sally and Ober, Raimond J.}
    16231 }
    16232 @article{Wu2005,
    16233   year = {2005},
    16234   title = {{Three-dimensional fluorescent particle tracking at micron-scale using a single camera}},
    16235   pages = {{461-465}},
    16236   journal = {{Experiments in Fluids}},
    16237   volume = {{38}},
    16238   author = {Wu, Mingming and Roberts, John W. and Buckley, Mark}
    16239 }
    16240 @article{Maier2000,
    16241   number = {{22}},
    16242   year = {2000},
    16243   title = {{Replication by a single DNA polymerase of a stretched single-stranded DNA}},
    16244   pages = {{12002-12007}},
    16245   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16246   volume = {{97}},
    16247   author = {Maier, Berenike and Bensimon, David and Croquette, Vincent}
    16248 }
    16249 @misc{Odijk2005,
    16250   month = {August 4, 2005},
    16251   year = {2005},
    16252   title = {{Note on DNA grafted to a surface (experiments Heidi Dietrich, TU Delft)}},
    16253   author = {Odijk, Theo}
    16254 }
    16255 @article{Zimm1956,
    16256   number = {{2}},
    16257   year = {1956},
    16258   title = {{Dynamics of Polymer Molecules in Dilute Solution: Viscoelasticity, Flow Birefringence and Dielectric Loss}},
    16259   pages = {{269-278}},
    16260   journal = {{The Journal of Chemical Physics}},
    16261   volume = {{24}},
    16262   author = {Zimm, Bruno H.}
    16263 }
    16264 @article{Sadr2007,
    16265   year = {2007},
    16266   title = {{Diffusion-induced bias in near-wall velocimetry}},
    16267   pages = {{443-456}},
    16268   journal = {{Journal of Fluid Mechanics}},
    16269   volume = {{577}},
    16270   author = {Sadr, Reza and Hohenegger, Christel and Li, Haifeng and Mucha, Peter J. and Yoda, Minami}
    16271 }
    16272 @article{Qian2000b,
    16273   number = {{1}},
    16274   year = {2000},
    16275   title = {{Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials}},
    16276   pages = {{137-143}},
    16277   journal = {{Biophysical Journal}},
    16278   volume = {{79}},
    16279   author = {Qian, Hong}
    16280 }
    16281 @article{Pirrung2002,
    16282   number = {{8}},
    16283   year = {2002},
    16284   title = {{How to Make a DNA Chip}},
    16285   pages = {{1276-1289}},
    16286   journal = {{Angewandte Chemie International Edition}},
    16287   volume = {{41}},
    16288   author = {Pirrung, Michael C.}
    16289 }
    16290 @article{Marko2003,
    16291   number = {{3}},
    16292   year = {2003},
    16293   title = {{The micromechanics of DNA}},
    16294   journal = {{Physics World}},
    16295   volume = {{16}},
    16296   author = {Marko, John F. and Cocco, Simona}
    16297 }
    16298 @article{Qian2000a,
    16299   number = {{4}},
    16300   year = {2000},
    16301   title = {{A mathematical analysis for the Brownian dynamics of a DNA tether}},
    16302   pages = {{331-340}},
    16303   journal = {{Journal of Mathematical Biology}},
    16304   volume = {{41}},
    16305   author = {Qian, Hong}
    16306 }
    16307 @misc{Marko2005,
    16308   month = {June 2, 2005},
    16309   year = {2005},
    16310   title = {{Introduction to Single-DNA Micromechanics}},
    16311   pages = {63},
    16312   publisher = {{Department of Physics, University of Illinois at Chicago}},
    16313   author = {Marko, J.F.}
    16314 }
    16315 @article{Schaefer1980,
    16316   number = {{5}},
    16317   year = {1980},
    16318   title = {{Dynamics of Semiflexible Polymers in Solution}},
    16319   pages = {{1280-1289}},
    16320   journal = {{Macromolecules}},
    16321   volume = {{13}},
    16322   author = {Schaefer, D.W. and Joanny, J.F. and Pincus, P.}
    16323 }
    16324 @article{Zurla2006,
    16325   year = {2006},
    16326   title = {{Novel tethered particle motion analysis of CI protein-mediated DNA looping in the regulation of bacteriophage lambda}},
    16327   pages = {{S225-S234}},
    16328   journal = {{Journal of Physics: Condensed Matter}},
    16329   volume = {{18}},
    16330   author = {Zurla, C. and Franzini, A. and Galli, G. and Dunlap, D. D. and Lewis, D. E. A. and Adhya, S. and Finzi, L.}
    16331 }
    16332 @article{Prabhat2007,
    16333   number = {{14}},
    16334   year = {2007},
    16335   title = {{Elucidation of intracellular recycling pathways leading to exocytosis of the Fc receptor, FcRn, by using multifocal plane microscopy}},
    16336   pages = {{5889-5894}},
    16337   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16338   volume = {{104}},
    16339   author = {Prabhat, Prashant and Gan, Zhuo and Chao, Jerry and Ram, Sripad and Vaccaro, Carlos and Gibbons, Steven and Ober, Raimond J. and Ward, E. Sally}
    16340 }
    16341 @inproceedings{Prabhat2006,
    16342   year = {2006},
    16343   title = {{Simultaneous imaging of several focal planes in fluorescence microscopy for the study of cellular dynamics in 3D}},
    16344   booktitle = {{Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIII}},
    16345   pages = {60900L},
    16346   editor = {Conchello, Jose-Angel and Cogswell, Carol J. and Wilson, Tony},
    16347   volume = {{6090}},
    16348   publisher = {{Proceedings of SPIE}},
    16349   author = {Prabhat, Prashant and Ram, Sripad and Ward, E. Sally and Ober, Raimond J.}
    16350 }
    16351 @article{Marko1994,
    16352   number = {{5171}},
    16353   year = {1994},
    16354   title = {{Fluctuations and Supercoiling of DNA}},
    16355   pages = {{506-508}},
    16356   journal = {{Science}},
    16357   volume = {{265}},
    16358   author = {Marko, John F. and Siggia, Eric D.}
    16359 }
    16360 @article{Marko1995,
    16361   number = {{26}},
    16362   year = {1995},
    16363   title = {{Stretching DNA}},
    16364   pages = {{8759-8770}},
    16365   journal = {{Macromolecules}},
    16366   volume = {{28}},
    16367   author = {Marko, John F. and Siggia, Eric D.}
    16368 }
    16369 @article{Winkler1992,
    16370   number = {{24}},
    16371   year = {1992},
    16372   title = {{Finitie Size Distribution and Partition Functions of Gaussian Chains: Maximum Entropy Approach}},
    16373   pages = {{6891-6896}},
    16374   journal = {{Macromolecules}},
    16375   volume = {{25}},
    16376   author = {Winkler, R.G. and Reineker, P.}
    16377 }
    16378 @article{Berciaud2005,
    16379   number = {{3}},
    16380   year = {2005},
    16381   title = {{Observation of Intrinsic Size Effects in the Optical Response of Individual Gold Nanoparticles}},
    16382   pages = {{515-518}},
    16383   journal = {{Nano Letters}},
    16384   volume = {{5}},
    16385   author = {Berciaud, St\\\'ephane and Cognet, Laurent and Tamarat, Philippe and Lounis, Brahim}
    16386 }
    16387 @article{Lahtinen2001,
    16388   year = {2001},
    16389   title = {{Diffusion of hard disks and rodlike molecules on surfaces}},
    16390   journal = {{Physical Review E}},
    16391   volume = {{64}},
    16392   author = {Lahtinen, J.M. and Hjelt, T. and Ala-Nissila, T. and Chvoj, Z.}
    16393 }
    16394 @article{Wong2006,
    16395   number = {{25}},
    16396   year = {2006},
    16397   title = {{The effect of integration time on fluctuation measurements: calibrating an optical trap in the presence of motion blur}},
    16398   pages = {{12517-12531}},
    16399   journal = {{Optics Express}},
    16400   volume = {{14}},
    16401   author = {Wong, Wesley P. and Halvorsen, Ken}
    16402 }
    16403 @article{Perkins1994,
    16404   year = {1994},
    16405   title = {{Relaxation of a Single DNA Molecule Observed by Optical Microscopy}},
    16406   pages = {{822-826}},
    16407   journal = {{Science}},
    16408   volume = {{264}},
    16409   author = {Perkins, Thomas T. and Quake, Stephern R. and Smith, Douglas E. and Chu, Steven}
    16410 }
    16411 @article{Lu2002,
    16412   year = {2002},
    16413   title = {{DNA Persistencde Length Revisited}},
    16414   pages = {{261-275}},
    16415   journal = {{Biopolymers}},
    16416   volume = {{61}},
    16417   author = {Lu, Yongjun and Weers, Brock and Stellwagen, Nancy C.}
    16418 }
    16419 @article{Laurens2009,
    16420   year = {2009},
    16421   title = {{Dissecting protein-induced DNA looping dynamics in real time}},
    16422   journal = {{Nucleic Acids Research}},
    16423   author = {Laurens, Niels and Bellamy, Stuart R. W. and Harms, August F. and Kovacheva, Yana S. and Halford, Stephen F. and Wuite, Gijs J. L.}
    16424 }
    16425 @article{Yguerabide1998b,
    16426   year = {1998},
    16427   title = {{Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. II. Experimental Characterization}},
    16428   pages = {{157-176}},
    16429   journal = {{Analytical Biochemistry}},
    16430   volume = {{262}},
    16431   author = {Yguerabide, Juan and Yguerabide, Evangelina E.}
    16432 }
    16433 @article{Capitanio2004,
    16434   year = {2004},
    16435   title = {{Exploring Molecular Motors and Switches at the Single-Molecule Level}},
    16436   pages = {{194-204}},
    16437   journal = {{Microscopy Research and Technique}},
    16438   volume = {{65}},
    16439   author = {Capitanio, M. and Vanzi, F. and Broggio, C. and Cicchi, R. and Normanno, D. and Romano, G. and Sacconi, L. and Pavone, F.S.}
    16440 }
    16441 @article{Sheppard2004,
    16442   number = {{22}},
    16443   year = {2004},
    16444   title = {{Annular pupils, radial polarization, and superresolution}},
    16445   pages = {{4322-4327}},
    16446   journal = {{Applied Optics}},
    16447   volume = {{43}},
    16448   author = {Sheppard, Colin J.R.}
    16449 }
    16450 @article{Zhu2006,
    16451   number = {{5}},
    16452   year = {2006},
    16453   title = {{Direct Numerical Simulation of Single-Molecule DNA by Cable Dynamics}},
    16454   pages = {{1078-1087}},
    16455   journal = {{Journal of Microelectromechanical Systems}},
    16456   volume = {{15}},
    16457   author = {Zhu, Qiang and Zeng, Jun and Triantafyllou, Michael S. and Yue, Dick K.P.}
    16458 }
    16459 @article{Strick1998,
    16460   year = {1998},
    16461   title = {{Behavior of Supercoiled DNA}},
    16462   pages = {{2016-2028}},
    16463   journal = {{Biophysical Journal}},
    16464   volume = {{74}},
    16465   author = {Strick, T.R. and Allemand, J.-F. and Bensimon, D. and Croquette, V.}
    16466 }
    16467 @article{Pouget2004,
    16468   number = {{9}},
    16469   year = {2004},
    16470   title = {{Single-particle tracking for DNA tether length monitoring}},
    16471   journal = {{Nucleic Acids Research}},
    16472   volume = {{32}},
    16473   author = {Pouget, Noelle and Dennis, Cynthia and Turlan, Catherine and Grigoriev, Mikhail and Chandler, Michael and Salome, Laurence}
    16474 }
    16475 @article{Saito1967,
    16476   number = {{1}},
    16477   year = {1967},
    16478   title = {{The Statistical Mechanical Theory of Stiff Chains}},
    16479   pages = {{219-226}},
    16480   journal = {{Journal of the Physical Society of Japan}},
    16481   volume = {{22}},
    16482   author = {Saito, Nobuhiko and Takahashi, Kunihiko and Yunoki, Yasuo}
    16483 }
    16484 @article{Smith1996,
    16485   number = {{5250}},
    16486   year = {1996},
    16487   title = {{Overstretching B-DNA: The Elastic Response of Individual Double-Stranded and Single-Stranded DNA Molecules}},
    16488   pages = {{795-799}},
    16489   journal = {{Science}},
    16490   volume = {{271}},
    16491   author = {Smith, Steven B. and Cui, Yujia and Bustamante, Carlos}
    16492 }
    16493 @article{Roeffaers2007,
    16494   number = {{31}},
    16495   year = {2007},
    16496   title = {{Single-molecule fluorescence spectroscopy in (bio)catalysis}},
    16497   pages = {{12603-12609}},
    16498   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16499   volume = {{104}},
    16500   author = {Roeffaers, Maarten B.J. and De Cremer, Gert and Uji-i, Hiroshi and Muls, Beniot and Sels, Bert F. and Jacobs, Pierre A. and De Schryver, Frans C. and De Vos, Dirk E. and Hofkens, Johan}
    16501 }
    16502 @book{Pluta1989,
    16503   year = {1989},
    16504   title = {{Advanced Light Microscopy}},
    16505   volume = {{2: Specialized Methods}},
    16506   address = {{Amsterdam}},
    16507   publisher = {{Elsevier}},
    16508   author = {Pluta, Maksymilian}
    16509 }
    16510 @book{Pluta1988,
    16511   year = {1988},
    16512   title = {{Advanced Light Microscopy}},
    16513   volume = {{1: Principles and Basic Properties}},
    16514   address = {{Amsterdam}},
    16515   publisher = {{Elsevier}},
    16516   author = {Pluta, Maksymilian}
    16517 }
    16518 @article{Broek2006,
    16519   number = {{1}},
    16520   year = {2006},
    16521   title = {{Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI}},
    16522   pages = {{167-174}},
    16523   journal = {{Nucleic Acids Research}},
    16524   volume = {{34}},
    16525   author = {Broek, Bram van den and Vanzi, Francesco and Normanno, Davide and Pavone, Francesco S. and Wuite, Gijs J. L.}
    16526 }
    16527 @article{Braslavsky2003,
    16528   number = {{7}},
    16529   year = {2003},
    16530   title = {{Sequence Information can be Obtained from Single DNA Molecules}},
    16531   pages = {{3960-3964}},
    16532   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16533   volume = {{100}},
    16534   author = {Braslavsky, Ido and Hebert, Benedict and Kartalov, Emil and Quake, Stephern R.}
    16535 }
    16536 @article{Ariel2003,
    16537   number = {{1}},
    16538   year = {2003},
    16539   title = {{Persistence length of a strongly charged rodlike polyelectrolyte in the presence of salt}},
    16540   pages = {{011805-1-011805-11}},
    16541   journal = {{Physical Review E}},
    16542   volume = {{67}},
    16543   author = {Ariel, Gil and Andelman, David}
    16544 }
    16545 @article{Yamakawa1972,
    16546   number = {{7}},
    16547   year = {1972},
    16548   title = {{Statistical Mechanics of Wormlike Chains. II. Excluded Volume Effects}},
    16549   pages = {{2843-2854}},
    16550   journal = {{The Journal of Chemical Physics}},
    16551   volume = {{57}},
    16552   author = {Yamakawa, Hiromi and Stockmayer, W. H.}
    16553 }
    16554 @article{Davidson1995,
    16555   year = {1995},
    16556   title = {{Arrays of Uniform Latex Spheres as Test Objects in Optical Microscopy}},
    16557   pages = {{173-178}},
    16558   journal = {{Particle and Particle Systems Characterization}},
    16559   volume = {{12}},
    16560   author = {Davidson, John A.}
    16561 }
    16562 @article{Huisken2004,
    16563   number = {{5686}},
    16564   year = {2004},
    16565   title = {{Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy}},
    16566   pages = {{1007-1009}},
    16567   journal = {{Science}},
    16568   volume = {{305}},
    16569   author = {Huisken, Jan and Swoger, Jim and Del Bene, Filippo and Wittbrodt, Joachim and Stelzer, Ernst H. K.}
    16570 }
    16571 @article{Goldman1967,
    16572   number = {{4}},
    16573   year = {1967},
    16574   title = {{Slow viscous motion of a sphere parallel to a plane wall - I Motion through a quiescent fluid}},
    16575   pages = {{637-651}},
    16576   journal = {{Chemical Engineering Science}},
    16577   volume = {{22}},
    16578   author = {Goldman, A.J. and Cox, R.G. and Brenner, H.}
    16579 }
    16580 @article{Maher2007,
    16581   year = {2007},
    16582   title = {{Spring theory}},
    16583   pages = {{984-986}},
    16584   journal = {{Nature}},
    16585   volume = {{448}},
    16586   author = {Maher, Brendan}
    16587 }
    16588 @article{Cui2008,
    16589   number = {{31}},
    16590   year = {2008},
    16591   title = {{Lensless high-resolution on-chip optrofluidic microscopes for Caenorhabditis elegans and cell imaging}},
    16592   pages = {{10670-10675}},
    16593   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16594   volume = {{105}},
    16595   author = {Cui, Xiquan and Lee, Lap Man and Heng, Xin and Zhong, Weiwei and Sternberg, Paul W. and Psaltis, Demetri and Yang, Changhuei}
    16596 }
    16597 @article{Hagerman1988,
    16598   year = {1988},
    16599   title = {{Flexibility of DNA}},
    16600   pages = {{265-286}},
    16601   journal = {{Annual Review of Biophysics and BioEngineering}},
    16602   volume = {{17}},
    16603   author = {Hagerman, P.J.}
    16604 }
    16605 @article{Vanzi2006,
    16606   number = {{12}},
    16607   year = {2006},
    16608   title = {{Lac repressor hinge flexibility and DNA looping: single molecule kinetics by tethered particle motion}},
    16609   pages = {{3409-3420}},
    16610   journal = {{Nucleic Acids Research}},
    16611   volume = {{34}},
    16612   author = {Vanzi, Francesco and Broggio, Chiara and Sacconi, Leonardo and Pavone, Francesco Saverio}
    16613 }
    16614 @article{Bronstein2009,
    16615   number = {{1}},
    16616   year = {2009},
    16617   title = {{Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells}},
    16618   pages = {{018102}},
    16619   journal = {{Physical Review Letters}},
    16620   volume = {{103}},
    16621   author = {Bronstein, I. and Israel, Y. and Kepten, E. and Mai, S. and Shav-Tal, Y. and Barkai, E. and Garini, Y.}
    16622 }
    16623 @article{Bawendi1985,
    16624   number = {{5}},
    16625   year = {1985},
    16626   title = {{A Wiener integral model for stiff polymer chains}},
    16627   pages = {{2491}},
    16628   journal = {{Journal of Chemical Physics}},
    16629   volume = {{83}},
    16630   author = {Bawendi, M.G. and Freed, Karl F.}
    16631 }
    16632 @article{Martin2002,
    16633   number = {{4}},
    16634   year = {2002},
    16635   title = {{Apparent Subdiffusion Inherent to Single Particle Tracking}},
    16636   pages = {{2109-2117}},
    16637   journal = {{Biophysical Journal}},
    16638   volume = {{83}},
    16639   author = {Martin, Douglas S. and Forstner, Martin B. and K\\\"as, Josef A.}
    16640 }
    16641 @article{Savelkoul2006,
    16642   number = {{1}},
    16643   year = {2006},
    16644   title = {{Detection of Mycobacterium tuberculosis complex with Real Time PCR: Comparison of different primer-probe sets based on the IS6110 element}},
    16645   pages = {{177-180}},
    16646   journal = {{Journal of Microbiological Methods}},
    16647   volume = {{66}},
    16648   author = {Savelkoul, Paul H.M. and Catsburg, Arnold and Mulder, Sije and Oostendorp, Ludo and Schirm, Jurjen and Wilke, Hans and van der Zanden, Adri G.M. and Noordhoek, Gerda T.}
    16649 }
    16650 @article{Bustamante2000,
    16651   number = {{3}},
    16652   year = {2000},
    16653   title = {{Single-molecule studies of DNA mechanics}},
    16654   pages = {{279-285}},
    16655   journal = {{Current Opinion in Structural Biology}},
    16656   volume = {{10}},
    16657   author = {Bustamante, Carlos and Smith, Steven B. and Liphardt, Jan and Smith, Doug}
    16658 }
    16659 @article{Bustamante2003,
    16660   year = {2003},
    16661   title = {{Ten years of tension: single-molecule DNA mechanics}},
    16662   pages = {{423-427}},
    16663   journal = {{Nature}},
    16664   volume = {{421}},
    16665   author = {Bustamante, Carlos and Bryant, Zev and Smith, Steven B.}
    16666 }
    16667 @article{Holtzer2007,
    16668   year = {2007},
    16669   title = {Nanometric three-dimensional tracking of individual quantom dots in cells},
    16670   pages = {053902},
    16671   journal = { Applied Physics Letters},
    16672   volume = {90},
    16673   author = {Holtzer, L. and Meckel, T. and Schmidt, T.}
    16674 }
    16675 @article{Huang2008,
    16676   year = {2008},
    16677   title = {Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy},
    16678   pages = {810-813},
    16679   journal = {Science},
    16680   volume = {319},
    16681   author = {Huang, B. and Wang, W. and Bates, M. and Zhuang, X.}
    16682 }
    16683 @article{Lindner2009,
    16684   year = {2009},
    16685   title = {{Studies of Single Molecules in their Natural Form}},
    16686   pages = {{283-291}},
    16687   journal = {{Israel Journal of Chemistry}},
    16688   volume = {{49}},
    16689   author = {Lindner, Moshe and Nir, Guy and Dietrich, Heidelinde R. C. and Young, Ian T. and Tauber, Elad and Bronshtein, I. and Altman, Liat and Garini, Yuval}
    16690 }
    16691 @article{Wilhelm1996,
    16692   number = {{12}},
    16693   year = {1996},
    16694   title = {{Radial Distribution Function of Semiflexible Polymers}},
    16695   pages = {{2581}},
    16696   journal = {{Physical Review Letters}},
    16697   volume = {{77}},
    16698   author = {Wilhelm, Jan and Frey, Erwin}
    16699 }
    16700 @article{Clercx1992,
    16701   number = {{4}},
    16702   year = {1992},
    16703   title = {{Brownian particles in shear flow and harmonic potentials: A study of long-time tails}},
    16704   pages = {{1942-1950}},
    16705   journal = {{Physical Review A}},
    16706   volume = {{46}},
    16707   author = {Clercx, H.J.H. and Schram, P.P.J.M.}
    16708 }
    16709 @inproceedings{Subotic2004,
    16710   year = {2004},
    16711   title = {{On the Feasability of Axial Tracking of a Fluorescent Nano-Particle Using a Defocusing Model}},
    16712   booktitle = {{Proceedings IEEE International Symposium on Biomedical Imaging: From Macro to Nano}},
    16713   pages = {1231-1234},
    16714   volume = {{2}},
    16715   author = {Subotic, Nadja and van de Ville, Dimitri and Unser, Michael}
    16716 }
    16717 @article{Ebenstein2009,
    16718   number = {{4}},
    16719   year = {2009},
    16720   title = {Lighting Up Individual {DNA} Binding Proteins with Quantum Dots},
    16721   pages = {{1598-1603}},
    16722   journal = {{Nano Letters}},
    16723   volume = {{9}},
    16724   author = {Ebenstein, Y. and Gassman, N. and Kim, S. and Antelman, J. and Kim, Y. and Ho, S. and Samuel, R. and Michalet, X. and Weiss, S.}
    16725 }
    16726 @article{Harlepp2004,
    16727   number = {{17}},
    16728   year = {2004},
    16729   title = {{Subnanometric measurements of evanescent wave penetration depth using total internal reflection microscopy combined with fluorescent correlation spectroscopy}},
    16730   journal = {{Applied Physics Letters}},
    16731   volume = {{85}},
    16732   author = {Harlepp, S. and Robert, J. and Darnton, N.C. and Chateney, D.}
    16733 }
    16734 @inproceedings{Nguyen2000,
    16735   year = {2000},
    16736   title = {{Magnification Corrected Optical Image Splitting for Simultaneous Multiplanar Acquisition}},
    16737   booktitle = {{Optical Diagnostics of Living Cells III}},
    16738   pages = {31-40},
    16739   editor = {Farkas, Daniel L. and Leif, Robert C.},
    16740   volume = {{3921}},
    16741   publisher = {{Proceedings of SPIE}},
    16742   author = {Nguyen, Lam K. and Bravo-Zanoguera, Miguel and Kellner, Albert L. and Price, Jeffrey H.}
    16743 }
    16744 @article{Braslavsky2001,
    16745   number = {{31}},
    16746   year = {2001},
    16747   title = {{Objective-type dark-field illumination for scattering from microbeads}},
    16748   pages = {{5650-5667}},
    16749   journal = {{Applied Optics}},
    16750   volume = {{40}},
    16751   author = {Braslavsky, Ido and Amit, Roee and Jaffar Ali, B.M. and Gileadi, Opher and Oppenheim, Amos and Stavans, Joel}
    16752 }
    16753 @article{Stepanow2004,
    16754   number = {{4}},
    16755   year = {2004},
    16756   title = {{Statistical mechanics of semiflexible polymers}},
    16757   pages = {{499-512}},
    16758   journal = {{The European Physical Journal B}},
    16759   volume = {{39}},
    16760   author = {Stepanow, S.}
    16761 }
    16762 @article{Gelles1988,
    16763   number = {{6155}},
    16764   year = {1988},
    16765   title = {{Tracking kinesin-driven movements with nanometric-scale precision}},
    16766   pages = {{450-453}},
    16767   journal = {{Nature}},
    16768   volume = {{331}},
    16769   author = {Gelles, Jeff and Schnapp, Bruce J. and Sheetz, Michael P.}
    16770 }
    16771 @book{Rubinstein2006,
    16772   year = {2006},
    16773   title = {{Polymer Physics}},
    16774   address = {{New York}},
    16775   publisher = {{Oxford University Press Inc.}},
    16776   author = {Rubinstein, Michael and Colby, Ralph H.}
    16777 }
    16778 @article{Seol2007,
    16779   number = {{12}},
    16780   year = {2007},
    16781   title = {{Elasticity of Short DNA Molecules: Theory and Experiment for Contour Lengths of 0.6-7 um}},
    16782   pages = {{4360-4373}},
    16783   journal = {{Biophysical Journal}},
    16784   volume = {{93}},
    16785   author = {Seol, Yeonee and Li, Jinyu and Nelson, Philip C. and Perkins, Thomas T. and Betterton, M.D.}
    16786 }
    16787 @article{Cohen2007,
    16788   number = {{31}},
    16789   year = {2007},
    16790   title = {{Principle-component analysis of shape fluctuations of single DNA molecules}},
    16791   pages = {{12622-12627}},
    16792   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16793   volume = {{104}},
    16794   author = {Cohen, Adam E. and Moerner, W.E.}
    16795 }
    16796 @article{Saxton2007,
    16797   number = {{4}},
    16798   year = {2007},
    16799   title = {{A Biological Interpretation of Transient Anomalous Subdiffusion. I. Qualitative Model}},
    16800   pages = {{1178-1191}},
    16801   journal = {{Biophysical Journal}},
    16802   volume = {{92}},
    16803   author = {Saxton, Michael J.}
    16804 }
    16805 @article{Otto1994,
    16806   number = {{3}},
    16807   year = {1994},
    16808   title = {{Persistence lengths of semiflexible chains - Methods and approximations}},
    16809   pages = {{543-555}},
    16810   journal = {{Macromolecular Theory and Simulations}},
    16811   volume = {{3}},
    16812   author = {Otto, Matthias and Eckert, Jochen and Vilgis, Thomas A.}
    16813 }
    16814 @article{Vennemann2007,
    16815   number = {{3}},
    16816   year = {2007},
    16817   title = {{In vivo whole-field blood velocity measurement techniques}},
    16818   pages = {{495-511}},
    16819   journal = {{Experiments in Fluids}},
    16820   volume = {{42}},
    16821   author = {Vennemann, Peter and Lindken, Ralph and Westerweel, Jerry}
    16822 }
    16823 @article{Vosch2007,
    16824   number = {{31}},
    16825   year = {2007},
    16826   title = {{Strongly emissive individual DNA-encapsulated Ag nanoclusters as single-molecule fluorophores}},
    16827   pages = {{12616-12621}},
    16828   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16829   volume = {{104}},
    16830   author = {Vosch, Tom and Antoku, Yasuko and Hsiang, Jung-Cheng and Richards, Chris I. and Gonzalez, Jose I. and Dickson, Robert M.}
    16831 }
    16832 @article{Galletto2006,
    16833   number = {{7113}},
    16834   year = {2006},
    16835   title = {{Direct observation of individual RecA filaments assembling on single DNA molecules}},
    16836   pages = {{875-878}},
    16837   journal = {{Nature}},
    16838   volume = {{443}},
    16839   author = {Galletto, Roberto and Amitani, Ichiro and Baskin, Ronald J. and Kowalczykowski, Stephen C.}
    16840 }
    16841 @article{Singh-Zocchi2003,
    16842   number = {{13}},
    16843   year = {2003},
    16844   title = {{Single-molecule detection of DNA hybridization}},
    16845   pages = {{7605-7610}},
    16846   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16847   volume = {{100}},
    16848   author = {Singh-Zocchi, Mukta and Dixit, Sanhita and Ivanov, Vassili and Zocchi, Giovanni}
    16849 }
    16850 @article{Frej1993,
    16851   number = {{9}},
    16852   year = {1993},
    16853   title = {{Hindered diffusion of a single sphere very near a wall in a nonuniform force field}},
    16854   pages = {{7552-7564}},
    16855   journal = {{Journal of Chemical Physics}},
    16856   volume = {{98}},
    16857   author = {Frej, Nasser A. and Prieve, Dennis C.}
    16858 }
    16859 @article{Lagowski1991,
    16860   number = {{2}},
    16861   year = {1991},
    16862   title = {{Stiff chain model-functional integral approach}},
    16863   pages = {{1266-1296}},
    16864   journal = {{Journal of Chemical Physics}},
    16865   volume = {{95}},
    16866   author = {Lagowski, Jolanta B. and Noolandi, Jaan and Nickel, Bernie}
    16867 }
    16868 @article{Bednar1995,
    16869   number = {{4}},
    16870   year = {1995},
    16871   title = {{Determination of DNA Persistence Length by Cryo-electron Microscopy. Separation of the Static and Dynamic Contributions to the Apparent Persistence Length of DNA}},
    16872   pages = {{579-594}},
    16873   journal = {{Journal of Molecular Biology}},
    16874   volume = {{254}},
    16875   author = {Bednar, Jan and Furrer, Patrick and Katritch, Vsevolod and Stasiak, Alicja Z. and Dubochet, Jacques and Stasiak, Andrzej}
    16876 }
    16877 @article{McIntosh2009,
    16878   number = {{4}},
    16879   year = {2009},
    16880   title = {{Detailed scaling analysis of low-force polyelectrolyte elasticity}},
    16881   pages = {{041803}},
    16882   journal = {{Physical Review E}},
    16883   volume = {{80}},
    16884   author = {McIntosh, D.B. and Ribeck, N. and Saleh, O.A.}
    16885 }
    16886 @article{Hyeon2006b,
    16887   number = {{3}},
    16888   year = {2006},
    16889   title = {{Size, shape, and flexibility of RNA structures}},
    16890   pages = {{194905}},
    16891   journal = {{The Journal of Chemical Physics}},
    16892   volume = {{125}},
    16893   author = {Hyeon, Changbong and Dima, Ruxandra I. and Thirumalai, D.}
    16894 }
    16895 @article{Caarls2011,
    16896   number = {1},
    16897   year = {2011},
    16898   title = {Minimizing light exposure with the programmable array microscope},
    16899   pages = {101-110},
    16900   journal = {Journal of Microscopy},
    16901   volume = {241},
    16902   author = {Caarls, W. and Rieger, B and Vries, A.H.B. de and Arndt-Jovin, D.J. and Jovin, T.M.}
    16903 }
    16904 @article{Jacobsen2006,
    16905   number = {{1}},
    16906   year = {2006},
    16907   title = {{Interferometric optical detection and tracking of very small gold nanoparticles at a water-glass interface}},
    16908   pages = {{405}},
    16909   journal = {{Optics Express}},
    16910   volume = {{14}},
    16911   author = {Jacobsen, Volker and Stoller, Patrick and Brunner, Christian and Vogel, Viola and Sandoghdar, Vahid}
    16912 }
    16913 @article{Crut2007,
    16914   number = {{29}},
    16915   year = {2007},
    16916   title = {{Fast dynamics of supercoiled DNA revealed by single-molecule experiments}},
    16917   pages = {{11957-11962}},
    16918   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16919   volume = {{104}},
    16920   author = {Cut, Aur\\\'elien and Koster, Daniel A. and Seidel, Ralf and Wiggins, Chris H. and Dekker, Nynke H.}
    16921 }
    16922 @article{Yguerabide1998a,
    16923   year = {1998},
    16924   title = {{Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. I. Theory}},
    16925   pages = {{137-156
    16926  }},
    16927   journal = {{Analytical Biochemistry}},
    16928   volume = {{262}},
    16929   author = {Yguerabide, Juan and Yguerabide, Evangelina E.}
    16930 }
    16931 @article{Strick1998b,
    16932   number = {{3-4}},
    16933   year = {1998},
    16934   title = {{Physical Approaches to the Study of DNA}},
    16935   pages = {{647-672}},
    16936   journal = {{Journal of Statistical Physics}},
    16937   volume = {{93}},
    16938   author = {Strick, T.R. and Allemand, J.-F. and Croquette, V. and Bensimon, D.}
    16939 }
    16940 @article{Rechendorff2009,
    16941   number = {{9}},
    16942   year = {2009},
    16943   title = {{Persistence length and scaling properties of single-stranded DNA adsorbed on modified graphite}},
    16944   pages = {{095103}},
    16945   journal = {{Journal of Chemical Physics}},
    16946   volume = {{131}},
    16947   author = {Rechendorff, Kristian and Witz, Guillaume and Adamcik, Jozef and Dietler, Giovanni}
    16948 }
    16949 @article{Graff2006,
    16950   number = {{1}},
    16951   year = {2006},
    16952   title = {{Resonance Light Scattering (RLS) Detection of Nanoparticle Separations in a Microelectrical Field-Flow Fractionation System}},
    16953   pages = {{8-13}},
    16954   journal = {{IEEE Transactions on Nanotechnology}},
    16955   volume = {{5}},
    16956   author = {Graff, Mason and Frazier, A. Bruno}
    16957 }
    16958 @article{Kao1994,
    16959   number = {{3}},
    16960   year = {1994},
    16961   title = {{Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position}},
    16962   pages = {{1291-1300}},
    16963   journal = {{Biophysical Journal}},
    16964   volume = {{67}},
    16965   author = {Kao, H.P. and Verkman, A.S.}
    16966 }
    16967 @article{Jo2007,
    16968   number = {{8}},
    16969   year = {2007},
    16970   title = {{A single-molecule barcoding system using nanoslits for DNA analysis}},
    16971   pages = {{2673-2678}},
    16972   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    16973   volume = {{104}},
    16974   author = {Jo, Kyubong and Dhingra, Dalia M. and Odijk, Theo and de Pablo, Juan J. and Graham, Michael D. and Runnheim, Rod and Forrest, Dan and Schwartz, David C.}
    16975 }
    16976 @article{Speidel2003,
    16977   number = {{2}},
    16978   year = {2003},
    16979   title = {{Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging}},
    16980   pages = {{69-71}},
    16981   journal = {{Optics Letters}},
    16982   volume = {{28}},
    16983   author = {Speidel, Michael and Jonas, Alexandr and Florin, Ernst-Ludwig}
    16984 }
    16985 @article{Pounder2006,
    16986   number = {{3}},
    16987   year = {2006},
    16988   title = {{Comparison of real-time polymerase chain reaction using the Smart Cycler and the Gen-Probe amplified Mycobacterium tuberculosis direct test for detection of M. tuberculosis complex in clinical specimens }},
    16989   pages = {{217-222}},
    16990   journal = {{Diagnostic Microbiology and Infectious Disease}},
    16991   volume = {{54}},
    16992   author = {Pounder, June I. and Aldous, Wade K. and Woods, Gail L.}
    16993 }
    16994 @article{Harris1966,
    16995   number = {{7}},
    16996   year = {1966},
    16997   title = {{On Polymer Dynamics}},
    16998   pages = {{2595}},
    16999   journal = {{The Journal of Chemical Physics}},
    17000   volume = {{44}},
    17001   author = {Harris, R.A. and Hearst, J.E.}
    17002 }
    17003 @article{Willert1992,
    17004   year = {1992},
    17005   title = {{Three-dimensional particle imaging with a single camera}},
    17006   pages = {{353-358}},
    17007   journal = {{Experiments in Fluids}},
    17008   volume = {{12}},
    17009   author = {Willert, C. E. and Gharib, M.}
    17010 }
    17011 @article{Oberholzer1997,
    17012   number = {21},
    17013   year = {1997},
    17014   title = {Grand canonical Brownian dynamics simulation of colloidal adsorption},
    17015   pages = {9157-9167},
    17016   journal = {Journal of Chemical Physics},
    17017   volume = {107},
    17018   author = {Oberholzer, M.R. and Wagner, N.J. and Lenhoff, Abraham M.}
    17019 }
    17020 @article{Wiggins2006,
    17021   year = {2006},
    17022   title = {Generalized theory of semiflexible polymers},
    17023   pages = {031906},
    17024   journal = {Physical Review E},
    17025   volume = {73},
    17026   author = {Wiggins, P.A. and Nelson, P.C.}
    17027 }
    17028 @article{Brenner1961,
    17029   number = {{3-4}},
    17030   year = {1961},
    17031   title = {{The slow motion of a sphere through a viscous fluid towards a plane surface}},
    17032   pages = {{242-251}},
    17033   journal = {{Chemical Engineering Science}},
    17034   volume = {{16}},
    17035   author = {Brenner, Howard}
    17036 }
    17037 @article{Bhattacharjee1987,
    17038   number = {{1}},
    17039   year = {1987},
    17040   title = {{Statistical mechanics of solutions of semiflexible chains: A path integral formulation}},
    17041   pages = {{411-418}},
    17042   journal = {{the Journal of Chemical Physics}},
    17043   volume = {{86}},
    17044   author = {Bhattacharjee, Somendra M. and Muthukumar, M.}
    17045 }
    17046 @article{Armani2007,
    17047   year = {2007},
    17048   title = {{Label-Free, Single-Molecule Detection with Optical Microcavities}},
    17049   journal = {{Sciencexpress}},
    17050   author = {Armani, Andrea M. and Kulkarni, Rajan P. and Fraser, Scott E. and Flagan, Richard C. and Vahala, Kerry J.}
    17051 }
    17052 @article{Hegner1999,
    17053   number = {{18}},
    17054   year = {1999},
    17055   title = {{Polymerization and mechanical properties of single RecA-DNA filaments}},
    17056   pages = {{10109-10114}},
    17057   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    17058   volume = {{96}},
    17059   author = {Hegner, Martin and Smith, Steven B. and Bustamante, Carlos}
    17060 }
    17061 @article{Zhu2001,
    17062   number = {{1}},
    17063   year = {2001},
    17064   title = {{Protein arrays and microarrays}},
    17065   pages = {{40-45}},
    17066   journal = {{Current Opinion in Chemical Biology}},
    17067   volume = {{5}},
    17068   author = {Zhu, Heng and Snyder, Michael}
    17069 }
    17070 @article{Wiggins2006b,
    17071   year = {2006},
    17072   title = {{High flexibility of DNA on short length scales probed by atomic force microscopy}},
    17073   pages = {{137-141}},
    17074   journal = {{Nature Nanotechnology}},
    17075   volume = {{1}},
    17076   author = {Wiggins, P. A. and van der Heijden, T. and Moreno-Herrero, F. and Spakowitz, A. and Philips, R. and Windom, J. and Dekker, C. and Nelson, P. C.}
    17077 }
    17078 @article{Zhang2007,
    17079   number = {{10}},
    17080   year = {2007},
    17081   title = {{Gaussian approximations of fluorescence microscope point-spread function models}},
    17082   pages = {{1819-1829}},
    17083   journal = {Applied Optics},
    17084   volume = {{46}},
    17085   author = {Zhang, B. and Zerubia, J. and Olivio-Marin, J.-C.}
    17086 }
    17087 @article{Scott1979,
    17088   number = {{3}},
    17089   year = {1979},
    17090   title = {{On optimal and data-based histograms}},
    17091   pages = {{605-610}},
    17092   journal = {{Biometrika}},
    17093   volume = {{66}},
    17094   author = {Scott, David W.}
    17095 }
    17096 @article{Mlodzianoski2009,
    17097   number = {{10}},
    17098   year = {2009},
    17099   title = {Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy},
    17100   pages = {{8264-8277}},
    17101   journal = {{Optics Express}},
    17102   volume = {{17}},
    17103   author = {Mlodzianoski, M.J. and Juette, M.F. and Beane, G.L. and Bewersdorf, J.}
    17104 }
    17105 @article{Carre2003,
    17106   year = {2003},
    17107   title = {{Molecular interactions between DNA and an aminated glass substrate}},
    17108   pages = {{49-55}},
    17109   journal = {{Journal of Colloid and Interface Science}},
    17110   volume = {{260}},
    17111   author = {Carr\\\'e, Alain and Lacarri\\\`ere, Val\\\'erie and Birch, William}
    17112 }
    17113 @article{Sage2005,
    17114   number = {9},
    17115   year = {2005},
    17116   title = {Automatic Tracking of Individual Fluorescence Particles: Application to the Study of Chromosome Dynamics},
    17117   pages = {1372-1383},
    17118   journal = {IEEE Transactions on Image Processing},
    17119   volume = {14},
    17120   author = {Sage, D. and Neumann, F.R. and Hediger, F. and Gasser, S.M. and Unser, M.}
    17121 }
    17122 @article{Dohoney2001,
    17123   year = {2001},
    17124   title = {{Chi-Sequence recognition and DNA translocation by single RecBCD helicase/nuclease molecules}},
    17125   pages = {{370-374}},
    17126   journal = {{Nature}},
    17127   volume = {{409}},
    17128   author = {Dohoney, Kathleen M. and Gelles, Jeff}
    17129 }
    17130 @article{Saleh2009,
    17131   number = {{6}},
    17132   year = {2009},
    17133   title = {{Nonlinear Low-Force Elasticity of Single-Stranded DNA Molecules}},
    17134   pages = {{068301}},
    17135   journal = {{Physical Review Letters}},
    17136   volume = {{102}},
    17137   author = {Saleh, O.A. and McIntosh, D.B. and Pincus, P. and Ribeck, N.}
    17138 }
    17139 @article{Moerner2007,
    17140   number = {{31}},
    17141   year = {2007},
    17142   title = {{New directions in single-molecule imaging and analysis}},
    17143   pages = {{12596-12602}},
    17144   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    17145   volume = {{104}},
    17146   author = {Moerner, W.E.}
    17147 }
    17148 @article{Spakowitz2005,
    17149   year = {2005},
    17150   title = {{End-to-end distance vector distribution with fixed end orientations for the wormlike chain model}},
    17151   journal = {{Physical Review E}},
    17152   volume = {{72}},
    17153   author = {Spakowitz, Andrew J. and Wang, Zhen-Gang}
    17154 }
    17155 @article{Spakowitz2004,
    17156   year = {2004},
    17157   title = {{Exact Results for a Semiflexible Polymer Chain in an Aligning Field}},
    17158   pages = {{5814-5823}},
    17159   journal = {{Macromolecules}},
    17160   volume = {{37}},
    17161   author = {Spakowitz, Andrew J. and Wang, Zhen-Gang}
    17162 }
    17163 @article{Spakowitz2006,
    17164   number = {{5}},
    17165   year = {2006},
    17166   title = {{Wormlike chain statistics with twist and fixed ends}},
    17167   pages = {{684-690}},
    17168   journal = {{Europhysics Letters (EPL)}},
    17169   volume = {{73}},
    17170   author = {Spakowitz, A. J.}
    17171 }
    17172 @article{Wieser2008,
    17173   number = {12},
    17174   year = {2008},
    17175   title = {Versatile Analysis of Single-Molecule Tracking Data by Comprehensive Testing against {Monte Carlo} Simulations},
    17176   pages = {5988-6001},
    17177   journal = {Biophysical Journal},
    17178   volume = {95},
    17179   author = {Wieser, S. and Axmann, M. and {Sch\"utz}, G.J.}
    17180 }
    17181 @phdthesis{Sarkar2002,
    17182   year = {2002},
    17183   title = {{Theoretical micromechanics of DNA and DNA-protein complexes}},
    17184   school = {{University of Illinois at Chicago}},
    17185   author = {Sarkar, Abhijit}
    17186 }
    17187 @article{Ha1995,
    17188   number = {{21}},
    17189   year = {1995},
    17190   title = {{A mean-field model for semiflexible chains}},
    17191   pages = {{9408-9412}},
    17192   journal = {{Journal of Chemical Physics}},
    17193   volume = {{103}},
    17194   author = {Ha, B.-Y. and Thirumalai, D.}
    17195 }
    17196 @misc{Beausang2006,
    17197   month = {October 1, 2006},
    17198   year = {2006},
    17199   title = {{Elementary simulation of tethered Brownian motion}},
    17200   author = {Beausang, John F. and Zurla, Chiara and Sullivan, Luke and Finzi, Laura and Nelson, Philip C.}
    17201 }
    17202 @article{Beausang2007,
    17203   number = {{6}},
    17204   year = {2007},
    17205   title = {{Elementary simulation of tethered Brownian motion}},
    17206   pages = {{520-523}},
    17207   journal = {{American Journal of Physics}},
    17208   volume = {{75}},
    17209   author = {Beausang, John F. and Zurla, Chiara and Finzi, Laura and Sullivan, Luke and Nelson, Philip C.}
    17210 }
    17211 @phdthesis{Guasto2008,
    17212   year = {2008},
    17213   title = {{Micro- and Nano-scale Colloidal Dynamics Near Surfaces}},
    17214   school = {{Brown University}},
    17215   author = {Guasto, Jeffrey S.}
    17216 }
    17217 @misc{Nelson2001,
    17218   year = {2001},
    17219   title = {{Dynamical Theories of Brownian Motion}},
    17220   volume = {Second edition},
    17221   publisher = {{Princeton University Press}},
    17222   author = {Nelson, Edward}
    17223 }
    17224 @article{Shivashankar1998,
    17225   number = {{3}},
    17226   year = {1998},
    17227   title = {{Backscattering from a tethered bead as a probe of DNA flexibility}},
    17228   pages = {{291-293}},
    17229   journal = {{Applied Physics Letters}},
    17230   volume = {{73}},
    17231   author = {Shivashankar, G.V. and Stolovitzky, G. and Libchaber, A.}
    17232 }
    17233 @phdthesis{Niu2004,
    17234   year = {2004},
    17235   title = {{A Label-free, Fluorescence Based Assay for Microarray}},
    17236   school = {{Virginia Polytechnic Institute and State University}},
    17237   author = {Niu, Sanjun}
    17238 }
    17239 @article{Hiraoka1987,
    17240   year = {1987},
    17241   title = {The Use of a Charge-Coupled Device for Quantitative Optical Microscopy of Biological Structures},
    17242   pages = {{36-41}},
    17243   journal = {Science},
    17244   volume = {{238}},
    17245   author = {Hiraoka, Y. and Sedat, J.W. and Agard, D.A.}
    17246 }
    17247 @article{Yamakawa1976,
    17248   number = {{6}},
    17249   year = {1976},
    17250   title = {{Statistical mechanics of helical wormlike chains. II. Operational method and moments}},
    17251   pages = {{2371-2376}},
    17252   journal = {{The Journal of Chemical Physics}},
    17253   volume = {{65}},
    17254   author = {Yamakawa, Hiromi and Fujii, Motoharu and Shimada, Jiro}
    17255 }
    17256 @article{Nelson2007,
    17257   year = {2007},
    17258   title = {{Colloidal particle motion as a diagnostic of DNA conformational transitions}},
    17259   journal = {{Current Opinion in Colloid & Interface Science}},
    17260   author = {Nelson, Philip C.}
    17261 }
    17262 @article{Allemand2003,
    17263   year = {2003},
    17264   title = {{Stretching DNA and RNA to probe their interactions with proteins}},
    17265   pages = {{266-274}},
    17266   journal = {{Current Opinion in Structural Biology}},
    17267   volume = {{13}},
    17268   author = {Allemand, Jean-Francois and Bensimon, David and Croquette, Vincent}
    17269 }
    17270 @article{Liu2007,
    17271   number = {{12}},
    17272   year = {2007},
    17273   title = {{Quantized plasmon quenching dips nanospectroscopy via plasmon resonance energy transfer}},
    17274   pages = {{1015-1017}},
    17275   journal = {{Nature Methods}},
    17276   volume = {{4}},
    17277   author = {Liu, Gang Logan and Long, Yi-Tao and Choi, Yeonho and Kang, Taewook and Lee, Luke P.}
    17278 }
    17279 @article{Prieve1990,
    17280   number = {{2}},
    17281   year = {1990},
    17282   title = {{Total Internal Reflection Microscopy: a Tool for Measuring Colloidal Forces}},
    17283   pages = {{396-403}},
    17284   journal = {{Langmuir}},
    17285   volume = {{6}},
    17286   author = {Prieve, Dennis C. and Frej, Nasser A.}
    17287 }
    17288 @article{Strick1996,
    17289   number = {{5257}},
    17290   year = {1996},
    17291   title = {{The Elasticity of a Single Supercoiled DNA Molecule}},
    17292   pages = {{1835-1837}},
    17293   journal = {{Science}},
    17294   volume = {{271}},
    17295   author = {Strick, T.R. and Allemand, J.-F. and Bensimon, D. and Bensimon, A. and Croquette, V.}
    17296 }
    17297 @article{Prieve1993,
    17298   number = {{9}},
    17299   year = {1993},
    17300   title = {{Scattering of an evanescent surface wave by a microscopic dielectric sphere}},
    17301   journal = {{Applied Optics}},
    17302   volume = {{32}},
    17303   author = {Prieve, Dennis C. and Walz, John Y.}
    17304 }
    17305 @article{Montanari2001,
    17306   number = {{10}},
    17307   year = {2001},
    17308   title = {{Hairpin Formation and Elongation of Biomolecules}},
    17309   pages = {{2178-2181}},
    17310   journal = {{Physical Review Letters}},
    17311   volume = {{86}},
    17312   author = {Montanari, Andrea and M\\\'ezard, Marc}
    17313 }
    17314 @article{Storm2003b,
    17315   number = {{5}},
    17316   year = {2003},
    17317   title = {{Theory of high-force DNA stretching and overstretching}},
    17318   pages = {{051906}},
    17319   journal = {{Physical Review E}},
    17320   volume = {{67}},
    17321   author = {Storm, C. and Nelson, P. C.}
    17322 }
    17323 @article{Bouchiat1999,
    17324   year = {1999},
    17325   title = {{Estimating the Persistence Length of a Worm-Like Chain Molecule from Force-Extension Measurements}},
    17326   pages = {{409-413}},
    17327   journal = {{Biophysical Journal}},
    17328   volume = {{76}},
    17329   author = {Bouchiat, C. and Wang, M. D. and Allemand, J.-F. and Strick, T. and Block, S. M. and Croquette, V.}
    17330 }
    17331 @article{Cady2007,
    17332   year = {2007},
    17333   title = {{Optimized linkage and quenching strategies for quantum dot molecular beacons}},
    17334   pages = {{116-124}},
    17335   journal = {{Molecular and Cellular Probes}},
    17336   volume = {{21}},
    17337   author = {Cady, Nathaniel C. and Strickland, Aaron D. and Batt, Carl A.}
    17338 }
    17339 @article{Fraden1993,
    17340   number = {{4}},
    17341   year = {1993},
    17342   title = {{Angular correlations and the isotropic-nematic phase transition in suspensions of tobacco mosaic virus}},
    17343   pages = {{2816-2838}},
    17344   journal = {{Physical Review E}},
    17345   volume = {{48}},
    17346   author = {Fraden, Seth and Maret, Georg}
    17347 }
    17348 @article{Bustamante1994,
    17349   number = {{5178}},
    17350   year = {1994},
    17351   title = {{Entropic Elasticity of lambda-Phage DNA}},
    17352   pages = {{1599-1601}},
    17353   journal = {{Science}},
    17354   volume = {{265}},
    17355   author = {Bustamante, C. and Marko, J.F. and Siggia, E.D. and Smith, S.}
    17356 }
    17357 @article{Rouse1953,
    17358   number = {{7}},
    17359   year = {1953},
    17360   title = {{A Theory of the Linear Viscoelastic Properties of Dilute Solutions of Coiling Polymers}},
    17361   pages = {{1272-1280}},
    17362   journal = {{The Journal of Chemical Physics}},
    17363   volume = {{21}},
    17364   author = {Rouse, Prince E.}
    17365 }
    17366 @article{Vanzi2003,
    17367   number = {{10}},
    17368   year = {2003},
    17369   title = {{Protein synthesis by single ribosomes}},
    17370   pages = {{1174-1179}},
    17371   journal = {{RNA}},
    17372   volume = {{9}},
    17373   author = {Vanzi, Francesco and Vladimirov, Serguei and Knudsen, Charlotte R. and Goldman, Yale E. and Cooperman, Barry S.}
    17374 }
    17375 @article{Lambert2006,
    17376   year = {2006},
    17377   title = {{Mg2+-Induced Compaction of Single RNA Molecules Monitored by Tethered Particle Microscopy}},
    17378   pages = {{3672-3685}},
    17379   journal = {{Biophysical Journal}},
    17380   volume = {{90}},
    17381   author = {Lambert, Meredith Newby and {V\"ocker}, Eva and Blumberg, Seth and Redemann, Stefanie and Gajraj, Arivalagan and Meiners, Jens-Christian and Walter, Nils. G.}
    17382 }
    17383 @article{Kessler2004,
    17384   number = {{2}},
    17385   year = {2004},
    17386   title = {{Distribution functions for filaments under tension}},
    17387   pages = {{1155-1164}},
    17388   journal = {{Journal of Chemical Physics}},
    17389   volume = {{121}},
    17390   author = {Kessler, David A. and Rabin, Yitzhak}
    17391 }
    17392 @article{Edwards1970,
    17393   year = {1970},
    17394   title = {{Theory of the Single Chain}},
    17395   pages = {{43}},
    17396   journal = {{Discussions of the Faraday Society}},
    17397   volume = {{49}},
    17398   author = {Edwards, S.F.}
    17399 }
    17400 @article{Bouzigues2008,
    17401   number = {{11}},
    17402   year = {2008},
    17403   title = {{Nanofluidics in the Debye Layer at Hydrophilic and Hydrophobic Surfaces}},
    17404   pages = {{114503}},
    17405   journal = {{Physical Review Letters}},
    17406   volume = {{101}},
    17407   author = {Bouzigues, C. I. and Tabeling, P. and Bocquet, L.}
    17408 }
    17409 @misc{Odijk2008,
    17410   month = {05 September 2008},
    17411   year = {2008},
    17412   title = {{Private communication}},
    17413   author = {Odijk, Theo}
    17414 }
    17415 @article{Kirkpatrick2008,
    17416   number = {{1}},
    17417   year = {2008},
    17418   title = {{Performance of a gradient-based shift estimator in a spatially sparse data environment: tracking the sub-pixel motion of fluorescent particles}},
    17419   pages = {{64-72}},
    17420   journal = {{Journal of Microscopy}},
    17421   volume = {{212}},
    17422   author = {Kirkpatrick, S.J. and Duncan, D.D.}
    17423 }
    17424 @article{Visnapuu2009,
    17425   number = {{10}},
    17426   year = {2009},
    17427   title = {{Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition}},
    17428   pages = {{1056-1062}},
    17429   journal = {{Nature Structural & Molecular Biology}},
    17430   volume = {{16}},
    17431   author = {Visnapuu, Mari-Liis and Greene, Eric C.}
    17432 }
    17433 @book{Conover1980,
    17434   series = {{Wiley series in probability and mathematical statistics}},
    17435   edition = {{Second edition}},
    17436   year = {1980},
    17437   title = {{Practical Nonparametric Statistics}},
    17438   address = {{New York}},
    17439   publisher = {{Wiley}},
    17440   author = {Conover, W.J.}
    17441 }
    17442 @article{Snyder1992,
    17443   number = {{5}},
    17444   year = {1992},
    17445   title = {{Deblurring Subject to Nonnegativity Constraints}},
    17446   pages = {{1143-1150}},
    17447   journal = {{IEEE Transactions on Signal Processing}},
    17448   volume = {{40}},
    17449   author = {Snyder, Donald L. and Schulz, Timothy H. and O'Sullivan, Joseph A.}
    17450 }
    17451 @article{DiMarzio1965b,
    17452   number = {{2}},
    17453   year = {1965},
    17454   title = {{One-Dimensional Model of Polymer Adsorption}},
    17455   journal = {{The Journal of Chemical Physics}},
    17456   volume = {{43}},
    17457   author = {DiMarzio, Edmund A. and McCrackin, Frank L.}
    17458 }
    17459 @article{DiMarzio1965a,
    17460   number = {{6}},
    17461   year = {1965},
    17462   title = {{Proper Accounting of Conformations of a Polymer Near a Surface}},
    17463   pages = {{2101-2106}},
    17464   journal = {{The Journal of Chemical Physics}},
    17465   volume = {{42}},
    17466   author = {DiMarzio, Edmund A.}
    17467 }
    17468 @article{Netopilik1990,
    17469   year = {1990},
    17470   title = {{Orientation-dependent rotational diffusion coefficient of rod-like macromolecules in semi-dilute solution}},
    17471   pages = {{172-173}},
    17472   journal = {{Rheologica Acta}},
    17473   volume = {{29}},
    17474   author = {Netopil\\\'{\\\i}k, M.}
    17475 }
    17476 @article{Hamaker1937,
    17477   number = {{10}},
    17478   year = {1937},
    17479   title = {{The London-Van Der Waals Attraction Between Spherical Particles}},
    17480   pages = {{1058-1072}},
    17481   journal = {{Physica }},
    17482   volume = {{4}},
    17483   author = {Hamaker, H.C.}
    17484 }
    17485 @article{Cheezum2001,
    17486   number = {{4}},
    17487   year = {2001},
    17488   title = {{Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles}},
    17489   pages = {{2378-2388}},
    17490   journal = {{Biophysical Journal}},
    17491   volume = {{81}},
    17492   author = {Cheezum, Michael K. and Walker, William F. and Guilford, William H.}
    17493 }
    17494 @article{Ritchie2005,
    17495   number = {{3}},
    17496   year = {2005},
    17497   title = {{Detection of Non-Brownian Diffusion in the Cell Membrane in Single Molecule Tracking}},
    17498   pages = {{2266-2277}},
    17499   journal = {{Biophysical Journal}},
    17500   volume = {{88}},
    17501   author = {Ritchie, Ken and Sha, Xiao-Yuan and Kondo, Junko and Iwasawa, Kokoro and Fujiwara, Takahiro and Kusumi, Akihiro}
    17502 }
    17503 @incollection{Han2009,
    17504   series = {{The IMA Volumes in Mathematics and its Applications}},
    17505   year = {2009},
    17506   title = {{Calibration of Tethered Particle Motion Experiments}},
    17507   booktitle = {{Mathematics of DNA Structure, Funcion and Interactions}},
    17508   editor = {Benham, C.J. and Harvey, S. and Olson, W.K. and Sumners, D.W. and Swigon, D.},
    17509   volume = {150},
    17510   publisher = {{Springer}},
    17511   author = {Han, Lin and Lui, Bertrand and Blumberg, Seth and Beausang, John F. and Nelson, Philip C. and Philips, Rob}
    17512 }
    17513 @article{Towles2009,
    17514   year = {2009},
    17515   title = {{First-principles calculation of DNA looping in tethered particle experiments}},
    17516   pages = {{025001}},
    17517   journal = {{Physical Biology}},
    17518   volume = {{6}},
    17519   author = {Towles, Kevin B. and Beausang, John F. and Garcia, H.G. and Philips, Rob and Nelson, Philip C.}
    17520 }
    17521 @article{Pralle1999,
    17522   number = {{5}},
    17523   year = {1999},
    17524   title = {{Three-Dimensional High-resolution Particle Tracking for Optical Tweezers by Forward Scattered Light}},
    17525   pages = {{378-386}},
    17526   journal = {{Microscopy Research and Technique}},
    17527   volume = {{44}},
    17528   author = {Pralle, A. and Prummer, M. and Florin, E.-L and Stelzer, E.H.K. and H\\\"orber, J.K.H.}
    17529 }
    17530 @article{Wrobel2003,
    17531   number = {{12}},
    17532   year = {2003},
    17533   title = {{Optimization of high-density cDNA-microarray protocols by 'design of experiments'}},
    17534   journal = {{Nucleic Acids Research}},
    17535   volume = {{131}},
    17536   author = {Wrobel, Gunnar and Schlingemann, Joerg and Hummerich, Lars and Kramer, Heidi and Lichter, Peter and Hahn, Meinhard}
    17537 }
    17538 @article{Gibson1989,
    17539   number = {{9}},
    17540   year = {1989},
    17541   title = {{Diffraction by a Circular Aperture as a Model for Three-Dimensional Microscopy}},
    17542   pages = {{1357-1367}},
    17543   journal = {{Journal of the Optical Society of America A}},
    17544   volume = {{6}},
    17545   author = {Gibson, Sarah Frisken and Lanni, Frederick}
    17546 }
    17547 @article{Destainville2006,
    17548   number = {{2}},
    17549   year = {2006},
    17550   title = {{Quantification and Correction of Systematic Erros Due to Detector Time-Averaging in Single-Molecule Tracking Experiments}},
    17551   pages = {{L17-L19}},
    17552   journal = {{Biophysical Journal}},
    17553   volume = {{90}},
    17554   author = {Destainville, Nicolas and Salom\\\'e, Laurence}
    17555 }
    17556 @article{Sader1997,
    17557   number = {{2}},
    17558   year = {1997},
    17559   title = {{Accurate Analytic Formulae for the Far Field Effective Potential and Surface Charge Density of a Uniformly Charged Sphere}},
    17560   pages = {{508-510}},
    17561   journal = {{Journal of Colloid and Interface Science}},
    17562   volume = {{188}},
    17563   author = {Sader, John Elie}
    17564 }
    17565 @article{Durnin1987,
    17566   number = {{15}},
    17567   year = {1987},
    17568   title = {{Diffraction-Free Beams}},
    17569   pages = {{1499-1501}},
    17570   journal = {{Physical Review Letters}},
    17571   volume = {{58}},
    17572   author = {Durnin, J. and Miceli, J.J., Jr. and Eberly, J.H.}
    17573 }
    17574 @article{Moroz1998,
    17575   year = {1998},
    17576   title = {{Entropic Elasticity of Twist-Storing Polymers}},
    17577   pages = {{6333-6347}},
    17578   journal = {{Macromolecules}},
    17579   volume = {{31}},
    17580   author = {Moroz, J. David and Nelson, Philip}
    17581 }
    17582 @article{Peters1998,
    17583   number = {{7}},
    17584   year = {1998},
    17585   title = {{Three dimensional single-particle tracking with nanometer resolution}},
    17586   pages = {{2762-2766}},
    17587   journal = {{Review of Scientific Instruments}},
    17588   volume = {{69}},
    17589   author = {Peters, Inge M. and de Grooth, Bart G. and Schins, Juleon M. and Figdor, Carl G. and Greve, Jan}
    17590 }
    17591 @article{Kessler1991,
    17592   year = {1991},
    17593   title = {{The digoxigenin:anti-digoxigening (DIG) technology - a survey on the concept and realization of a novel bioanalytical indicator system}},
    17594   pages = {{161-205}},
    17595   journal = {{Molecular and Cellular Probes}},
    17596   volume = {{5}},
    17597   author = {Kessler, Christoph}
    17598 }
    17599 @article{Hyeon2006a,
    17600   number = {{10}},
    17601   year = {2006},
    17602   title = {{Kinetics of interior loop formation in semiflexible chains}},
    17603   pages = {{104905}},
    17604   journal = {{The Journal of Chemical Physics}},
    17605   volume = {{124}},
    17606   author = {Hyeon, Changbong and Thirumalai, D.}
    17607 }
    17608 @article{Moroz1997,
    17609   number = {{26}},
    17610   year = {1997},
    17611   title = {{Torsional directed walks, entropic elasticity, and DNA twist stiffness}},
    17612   pages = {{14418-14422}},
    17613   journal = {{Proceedings of the National Academy of Sciences of the USA}},
    17614   volume = {{94}},
    17615   author = {Moroz, J. David and Nelson, Philip}
    17616 }
    17617 @article{Massart2005,
    17618   number = {{4}},
    17619   year = {2005},
    17620   title = {{Visual Presentation of Data by Means of Box Plots}},
    17621   pages = {{215-218}},
    17622   journal = {{LC-GC Europe}},
    17623   volume = {{18}},
    17624   author = {Massart, D.L. and Smeyers-Verbeke, J. and Capron, X. and Schlesier, Karin}
    17625 }
    17626 @article{Hynes2001,
    17627   number = {3},
    17628   year = {2001},
    17629   title = {The ErbB receptor tyrosine family as signal integrators},
    17630   pages = {151-9},
    17631   journal = {Endocr Relat Cancer},
    17632   volume = {8},
    17633   author = {Hynes, N. E. and Horsch, K. and Olayioye, M. A. and Badache, A.}
    17634 }
    17635 @article{Michalet2001,
    17636   number = {4},
    17637   year = {2001},
    17638   title = {Properties of fluorescent semiconductor nanocrystals and their application to biological labeling},
    17639   pages = {261-276},
    17640   journal = {Single Molecules},
    17641   volume = {2},
    17642   author = {Michalet, X. and Pinaud, F. and Lacoste, T. D. and Dahan, M. and Bruchez, M. P. and Alivisatos, A. P. and Weiss, S.}
    17643 }
    17644 @article{Kuno2001,
    17645   number = {2},
    17646   year = {2001},
    17647   title = {"On"/"off" fluorescence intermittency of single semiconductor quantum dots},
    17648   pages = {1028-1040},
    17649   journal = {Journal of Chemical Physics},
    17650   volume = {115},
    17651   author = {Kuno, M. and Fromm, D. P. and Hamann, H. F. and Gallagher, A. and Nesbitt, D. J.}
    17652 }
    17653 @article{Martinez2003,
    17654   number = {4},
    17655   year = {2003},
    17656   title = {Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays},
    17657   pages = {e18},
    17658   journal = {Nucleic Acids Research},
    17659   volume = {31},
    17660   author = {Martinez, M. J. and Aragon, A. D. and Rodriguez, A. L. and Weber, J. M. and Timlin, J. A. and Sinclair, M. B. and Haaland, D. M. and Werner-Washburne, M.}
    17661 }
    17662 @article{Stauffer1997,
    17663   number = {6},
    17664   year = {1997},
    17665   title = {Compartmentalized IgE receptor-mediated signal transduction in living cells},
    17666   pages = {1447-54},
    17667   journal = {J Cell Biol},
    17668   volume = {139},
    17669   author = {Stauffer, T. P. and Meyer, T.}
    17670 }
    17671 @article{Hebert2005,
    17672   number = {5},
    17673   year = {2005},
    17674   title = {Spatiotemporal image correlation Spectroscopy (STICS) theory, verification, and application to protein velocity mapping in living CHO cells},
    17675   pages = {3601-3614},
    17676   journal = {Biophysical Journal},
    17677   volume = {88},
    17678   author = {Hebert, B. and Costantino, S. and Wiseman, P. W.}
    17679 }
    17680 @article{Pyenta2003,
    17681   year = {2003},
    17682   title = {Lateral diffusion of membrane lipid-anchored probes before and after aggregation of cell surface IgE-receptors},
    17683   pages = {8310-8318},
    17684   journal = {J. Phys. Chem. A},
    17685   volume = {107},
    17686   author = {Pyenta, P. and Schwille, P. and Webb, W. and Holowka, D. and Baird, B.}
    17687 }
    17688 @misc{CUDA,
    17689   year = {2007},
    17690   title = {Compute Unified Device Architecture (CUDA)},
    17691   note = {{http://www.nvidia.com}},
    17692   author = {NVIDIA}
    17693 }
    17694 @article{Petersen1993,
    17695   year = {1993},
    17696   title = {Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application},
    17697   pages = {1135-1146},
    17698   journal = {Biophys. J.},
    17699   volume = {65},
    17700   author = {Petersen, N. and Hoddelius, P.L. and Wiseman, P. and Seger, O. and Magnusson, K.}
    17701 }
    17702 @article{Hess2006,
    17703   number = {11},
    17704   year = {2006},
    17705   title = {Ultra-high resolution imaging by fluorescence photoactivation localization microscopy},
    17706   pages = {4258-4272},
    17707   journal = {Biophysical Journal},
    17708   volume = {91},
    17709   author = {Hess, S. T. and Girirajan, T. P. K. and Mason, M. D.}
    17710 }
    17711 @article{Kotula2004,
    17712   year = {2004},
    17713   title = {Automated analysis of SEM X-Ray spectral images: a powerful new microanalysis tool},
    17714   pages = {1-17},
    17715   journal = {Microscopy and Microanalysis },
    17716   volume = {9},
    17717   author = {Kotula, P. G. and Keenan, M. R. and Michael, J. R. }
    17718 }
    17719 @article{Yarden2001,
    17720   number = {2},
    17721   year = {2001},
    17722   title = {Untangling the ErbB signalling network},
    17723   pages = {127-37},
    17724   journal = {Nat Rev Mol Cell Biol},
    17725   volume = {2},
    17726   author = {Yarden, Y. and Sliwkowski, M. X.}
    17727 }
    17728 @article{MinGW,
    17729   year = {2008},
    17730   title = {Minimalist GNU for Windows},
    17731   url = {http://www.mingw.org/},
    17732   author = {MinGW}
    17733 }
    17734 @article{Shroff2008,
    17735   number = {5},
    17736   year = {2008},
    17737   title = {Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics},
    17738   pages = {417-423},
    17739   journal = {Nature Methods},
    17740   volume = {5},
    17741   author = {Shroff, H. and Galbraith, C. G. and Galbraith, J. A. and Betzig, E.}
    17742 }
    17743 @book{Jain1988,
    17744   year = {1988},
    17745   title = {Algorithms for Clustering Data},
    17746   publisher = {Prentice Hall},
    17747   author = {Jain, A. and Dubes, R.}
    17748 }
    17749 @article{Grecco2004,
    17750   number = {4-5},
    17751   year = {2004},
    17752   title = {Ensemble and single particle photophysical proper-ties (Two-Photon excitation, anisotropy, FRET, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells},
    17753   pages = {169-179},
    17754   journal = {Microscopy Research and Technique},
    17755   volume = {65},
    17756   author = {Grecco, H. E. and Lidke, K. A. and Heintzmann, R. and Lidke, D. S. and Spagnuolo, C. and Martinez, O. E. and Jares-Erijman, E. A. and Jovin, T. M.}
    17757 }
    17758 @article{VanBenthem2002,
    17759   year = {2002},
    17760   title = {Application of equality constraints on variables during alternating least squares procedures},
    17761   pages = {613-622},
    17762   journal = {Journal of Chemometrics},
    17763   volume = {16},
    17764   author = {Van Benthem, M. H. and Keenan, M. R. and Haaland, D. M. }
    17765 }
    17766 @article{Manley2008,
    17767   number = {2},
    17768   year = {2008},
    17769   title = {High-density mapping of single-molecule trajectories with photoactivated localization microscopy},
    17770   pages = {155-157},
    17771   journal = {Nature Methods},
    17772   volume = {5},
    17773   author = {Manley, S. and Gillette, J. M. and Patterson, G. H. and Shroff, H. and Hess, H. F. and Betzig, E. and Lippincott-Schwartz, J.}
    17774 }
    17775 @article{Wilson2000,
    17776   number = {5},
    17777   year = {2000},
    17778   title = {Observing FcepsilonRI signaling from the inside of the mast cell membrane},
    17779   pages = {1131-1142},
    17780   journal = {Journal of Cell Biology},
    17781   volume = {149},
    17782   author = {Wilson, B. S. and Pfeiffer, J. R. and Oliver, J. M.}
    17783 }
    17784 @article{Wilson2004,
    17785   number = {6},
    17786   year = {2004},
    17787   title = {Markers for detergent-resistant lipid rafts occupy distinct and dynamic domains in native membranes},
    17788   pages = {2580-2592},
    17789   journal = {Molecular Biology of the Cell},
    17790   volume = {15},
    17791   author = {Wilson, B. S. and Steinberg, S. L. and Liederman, K. and Pfeiffer, J. R. and Surviladze, Z. and Zhang, J. and Samelson, L. E. and Yang, L. H. and Kotula, P. G. and Oliver, J. M.}
    17792 }
    17793 @article{Timlin2005,
    17794   number = {1},
    17795   year = {2005},
    17796   title = {Hyperspectral microarray scanning: impact on the accuracy and reliability of gene expression data},
    17797   pages = {72},
    17798   journal = {BMC Genomics},
    17799   volume = {6},
    17800   author = {Timlin, J. A. and Haaland, D. M. and Sinclair, M. B. and Aragon, A. D. and Martinez, M. J. and Werner-Washburne, M.}
    17801 }
    17802 @article{Forney1973,
    17803   number = {3},
    17804   year = {1973},
    17805   title = {Viterbi Algorithm},
    17806   pages = {268-278},
    17807   journal = {Proceedings of the Ieee},
    17808   volume = {61},
    17809   author = {Forney, G. D.}
    17810 }
    17811 @article{Szent-Gyorgyi2008,
    17812   number = {4},
    17813   year = {2008},
    17814   title = {Fluorogen-activating single-chain antibodies for imaging cell surface proteins (vol 26, pg 235, 2008)},
    17815   pages = {470-470},
    17816   journal = {Nature Biotechnology},
    17817   volume = {26},
    17818   author = {Szent-Gyorgyi, C. and Schmidt, B. F. and Creeger, Y. and Fisher, G. W. and Zakel, K. L. and Adler, S. and Fitzpatrick, J. A. J. and Woolford, C. A. and Yan, Q. and Vasilev, K. V. and Berget, P. B. and Bruchez, M. P. and Jarvik, J. W. and Waggoner, A.}
    17819 }
    17820 @article{Andrews2008,
    17821   number = {8},
    17822   year = {2008},
    17823   title = {Actin restricts {Fc}$\epsilon${RI} diffusion and facilitates antigen-induced receptor immobilization},
    17824   pages = {955-963},
    17825   journal = {Nature Cell Biology},
    17826   volume = {10},
    17827   author = {Andrews, N. L. and Lidke, K. A. and Pfeiffer, J. R. and Burns, A. R. and Wilson, B. S. and Oliver, J. M. and Lidke, D. S.}
    17828 }
    17829 @inproceedings{Lidke2007ieee,
    17830   year = {2007},
    17831   title = {Localization fluorescence microscopy using quantum dot blinking},
    17832   booktitle = {4th IEEE International Symposium on Biomedical Imaging},
    17833   pages = {936-939},
    17834   address = {Metro Washington DC, USA. },
    17835   author = {Lidke, K. A. and Heintzmann, R.}
    17836 }
    17837 @article{Jinschek2010,
    17838   year = {2010},
    17839   title = {Quantitative atomic 3-D imaging of single/double sheet graphene structure},
    17840   journal = {Carbon},
    17841   author = {Jinschek, J.R. and Yucelen, E. and Calderon, H.A. and Freitag, B.}
    17842 }
    17843 @article{Bates2007,
    17844   number = {5845},
    17845   year = {2007},
    17846   title = {Multicolor super-resolution imaging with photo-switchable fluorescent probes},
    17847   pages = {1749-53},
    17848   journal = {Science},
    17849   volume = {317},
    17850   author = {Bates, M. and Huang, B. and Dempsey, G. T. and Zhuang, X.}
    17851 }
    17852 @book{Bos2007,
    17853   year = {2007},
    17854   title = {Parameter Estimation for Scientists and Engineers},
    17855   address = {New Jersey},
    17856   publisher = {Wiley \& Sons},
    17857   author = {A. van den Bos}
    17858 }
    17859 @article{Wolter2009,
    17860   number = {1},
    17861   year = {2010},
    17862   title = {Real-time computation of subdiffraction-resolution fluorescence images},
    17863   pages = {12-22},
    17864   journal = {Journal of Microscopy},
    17865   volume = {237},
    17866   author = {Wolter, S. and Schuttpelz, M. and Tescherepanow, M. and Linde, van de S. and Heilemann, M. and Sauer, M.}
    17867 }
    17868 @article{Bock2007,
    17869   number = {2},
    17870   year = {2007},
    17871   title = {Two-color far-field fluorescence nanoscopy based on photoswitchable emitters},
    17872   pages = {161-165},
    17873   journal = {Applied Physics B-Lasers and Optics},
    17874   volume = {88},
    17875   author = {Bock, H. and Geisler, C. and Wurm, C. A. and Von Middendorff, C. and Jakobs, S. and Schonle, A. and Egner, A. and Hell, S. W. and Eggeling, C.}
    17876 }
    17877 @article{Rust2006,
    17878   number = {10},
    17879   year = {2006},
    17880   title = {Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy {(STORM)}},
    17881   pages = {793-795},
    17882   journal = {Nature Methods},
    17883   volume = {3},
    17884   author = {Rust, M.J. and Bates, M. and Zhuang, X.W.}
    17885 }
    17886 @article{Enderlein2006,
    17887   number = {18},
    17888   year = {2006},
    17889   title = {Polariztion effect on position accuracy of fluorophore localization},
    17890   pages = {8112-8120},
    17891   journal = {Optics Express},
    17892   volume = {14},
    17893   author = {Enderlein, J. and Toprak, E. and Selvin, P.R.}
    17894 }
    17895 @article{Enderlein2000,
    17896   number = {9},
    17897   year = {2000},
    17898   title = {Theoretical Study of detection of a dipole emitter through an objective with high numerical aperture},
    17899   pages = {634-636},
    17900   journal = {Optics Letters},
    17901   volume = {25},
    17902   author = {Enderlein, J.}
    17903 }
    17904 @article{Dahan2003,
    17905   number = {5644},
    17906   year = {2003},
    17907   title = {Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking},
    17908   pages = {442-445},
    17909   journal = {Science},
    17910   volume = {302},
    17911   author = {Dahan, M. and Levi, S. and Luccardini, C. and Rostaing, P. and Riveau, B. and Triller, A.}
    17912 }
    17913 @misc{OberEstimationtool,
    17914   year = {2009},
    17915   title = {Estimation tool},
    17916   note = {University of Texas, Southwestern {http://www4.utsouthwestern.edu/wardlab}},
    17917   author = {Ober, R.J. and Ward, E.S.}
    17918 }
    17919 @article{Jin2007,
    17920   number = {3},
    17921   year = {2007},
    17922   title = {Single-particle tracking of membrane protein diffusion in a potential: Simulation, detection, and application to confined diffusion of CFTR Cl- channels},
    17923   pages = {1079-1088},
    17924   journal = {Biophysical Journal},
    17925   volume = {93},
    17926   author = {Jin, S. and Haggie, P. M. and Verkman, A. S.}
    17927 }
    17928 @article{Jin2007b,
    17929   number = {14},
    17930   year = {2007},
    17931   title = {Single particle tracking of complex diffusion in membranes: Simulation and detection of barrier, raft, and interaction phenomena},
    17932   pages = {3625-3632},
    17933   journal = {Journal of Physical Chemistry B},
    17934   volume = {111},
    17935   author = {Jin, S. and Verkman, A. S.}
    17936 }
    17937 @article{Rasnik2006,
    17938   number = {11},
    17939   year = {2006},
    17940   title = {Nonblinking and longlasting single-molecule fluorescence imaging},
    17941   pages = {891-893},
    17942   journal = {Nature Methods},
    17943   volume = {3},
    17944   author = {Rasnik, I. and McKinney, S. A. and Ha, T.}
    17945 }
    17946 @article{Hell1992,
    17947   number = {5-6},
    17948   year = {1992},
    17949   title = {Fundamental Improvement of Resolution with a 4Pi-Confocal Fluorescence Microscope Using 2-Photon Excitation},
    17950   pages = {277-282},
    17951   journal = {Optics Communications},
    17952   volume = {93},
    17953   author = {Hell, S. and Stelzer, E. H. K.}
    17954 }
    17955 @article{LidkeDS2007,
    17956   year = {2007},
    17957   title = {Exploring membrane protein dynamics by multicolor single quantum dot imaging using wide field, TIRF, and hyperspectral microscopy},
    17958   pages = {6448Y1-8},
    17959   journal = {Proc. of SPIE},
    17960   volume = {6448},
    17961   author = {Lidke, D. S. and Andrews, N. L. and Pfeiffer, J. R. and Jones, H. D. T. and Sinclair, M. B. and Haaland, D. M and Burns, A. R. and Wilson, B. S. and M., Oliver. J. and Lidke, K. A.}
    17962 }
    17963 @article{Warren1997,
    17964   number = {4},
    17965   year = {1997},
    17966   title = {Compact prism spectrographs based on aplanatic principles},
    17967   pages = {1174-1182},
    17968   journal = {Optical Engineering},
    17969   volume = {36},
    17970   author = {Warren, D. W. and Hackwell, J. A. and Gutierrez, D. J.}
    17971 }
    17972 @article{Schlessinger2002,
    17973   number = {6},
    17974   year = {2002},
    17975   title = {Ligand-induced, receptor-mediated dimerization and activation of EGF receptor},
    17976   pages = {669-72},
    17977   journal = {Cell},
    17978   volume = {110},
    17979   author = {Schlessinger, J.}
    17980 }
    17981 @article{Arndt-Jovin2006,
    17982   year = {2006},
    17983   title = {In vivo cell imaging with semiconductor quantum dots and noble-metal nanodots},
    17984   journal = {Proc. of SPIE},
    17985   volume = {6096, 60960P},
    17986   author = {Arndt-Jovin, D. J. and Lopez-Quintela, M. A and Lidke, D. S. and Rodr\'{i}guez, M. J. and Santos, F. M. and Lidke, K. A. and Hagen, G. M. and Jovin, T. M.}
    17987 }
    17988 @article{Ehrensperger2007,
    17989   number = {10},
    17990   year = {2007},
    17991   title = {Multiple association states between glycine receptors and gephyrin identified by SPT analysis},
    17992   pages = {3706-3718},
    17993   journal = {Biophysical Journal},
    17994   volume = {92},
    17995   author = {Ehrensperger, M. V. and Hanus, C. and Vannier, C. and Triller, A. and Dahan, M.}
    17996 }
    17997 @article{Gilfillan2006,
    17998   number = {3},
    17999   year = {2006},
    18000   title = {Integrated signalling pathways for mast-cell activation},
    18001   pages = {218-30},
    18002   journal = {Nat Rev Immunol},
    18003   volume = {6},
    18004   author = {Gilfillan, A. M. and Tkaczyk, C.}
    18005 }
    18006 @article{Eggeling2009,
    18007   year = {2009},
    18008   title = {Direct observation of the nanoscale dynamics of membrane lipids in a living cell},
    18009   pages = {1159-1163},
    18010   journal = {Nature},
    18011   volume = {457},
    18012   author = {Eggeling, C. and Ringemann, C. and Medda, R. and
    18013 Schwarzmann, G. and Sandhoff, K. and Polyakova, S. and Belov, V.N. and Hein, B. and Middendorff, C. von and {Sch\"onle}, A. and  Hell, S. W.}
    18014 }
    18015 @article{Huang2008a,
    18016   number = {12},
    18017   year = {2008},
    18018   title = {Whole-cell {3D STORM} reveals interactions between cellular structures with nanometer-scale resolution},
    18019   pages = {1047-1053},
    18020   journal = {Nature Methods},
    18021   volume = {5},
    18022   author = {Huang, B. and Jones, S.A. and Brandenburg, B. and Zhuang, X.}
    18023 }
    18024 @article{Hess2007,
    18025   number = {44},
    18026   year = {2007},
    18027   title = {Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories},
    18028   pages = {17370-17375},
    18029   journal = {Proceedings of the National Academy of Sciences},
    18030   volume = {104},
    18031   author = {Hess, S.T. and Gould, T.J. and Gudhetl, M.V. and Maas, S.A. and Mills, K.D. and Zimmerberg, J.}
    18032 }
    18033 @article{Gustafsson2005,
    18034   number = {37},
    18035   year = {2005},
    18036   title = {Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution},
    18037   pages = {13081-13086},
    18038   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    18039   volume = {102},
    18040   author = {Gustafsson, M. G. L.}
    18041 }
    18042 @article{Egner2007,
    18043   number = {9},
    18044   year = {2007},
    18045   title = {Fluorescence nanoscopy in whole cells by asynchronous localization of photoswitching emitters},
    18046   pages = {3285-3290},
    18047   journal = {Biophysical Journal},
    18048   volume = {93},
    18049   author = {Egner, A. and Geisler, C. and Von Middendorff, C. and Bock, H. and Wenzel, D. and Medda, R. and Andresen, M. and Stiel, A. C. and Jakobs, S. and Eggeling, C. and {Sch\"onle}, A. and Hell, S. W.}
    18050 }
    18051 @article{Bates2005,
    18052   number = {10},
    18053   year = {2005},
    18054   title = {Short-range spectroscopic ruler based on a single-molecule optical switch},
    18055   pages = {-},
    18056   journal = {Physical Review Letters},
    18057   volume = {94},
    18058   author = {Bates, M. and Blosser, T. R. and Zhuang, X. W.}
    18059 }
    18060 @article{Sinclair2006,
    18061   number = {24},
    18062   year = {2006},
    18063   title = {Hyperspectral confocal microscope},
    18064   pages = {6283-91},
    18065   journal = {Appl Opt},
    18066   volume = {45},
    18067   author = {Sinclair, M. B. and Haaland, D. M. and Timlin, J. A. and Jones, H. D.}
    18068 }
    18069 @article{Sinclair2004,
    18070   number = {10},
    18071   year = {2004},
    18072   title = {Design, construction, characterization, and application of a hyperspectral microarray scanner},
    18073   pages = {2079-2088},
    18074   journal = {Applied Optics},
    18075   volume = {43},
    18076   author = {Sinclair, M. B. and Timlin, J. A. and Haaland, D. M. and Werner-Washburne, M.}
    18077 }
    18078 @article{Sark2002,
    18079   number = {10},
    18080   year = {2002},
    18081   title = {Blueing, bleaching, and blinking of single CdSe/ZnS quantum dots},
    18082   pages = {871-879},
    18083   journal = {Chemphyschem},
    18084   volume = {3},
    18085   author = {Sark, W. G. J. H. M. van and Frederix, P. L. T. M. and Bol, A. A. and Gerritsen, H. C. and Meijerink, A.}
    18086 }
    18087 @book{Haaland2003,
    18088   series = {In Spectral Imaging: Instrumentation, Applications, and Analysis},
    18089   year = {2003},
    18090   title = {Multivariate curve resolution for hyperspectral image analysis: applications to microarray technology},
    18091   volume = {4959},
    18092   address = {San Jose, CA.},
    18093   publisher = {International Society for Optical Engineering},
    18094   author = {Haaland, D. M. and Timlin, J. A. and Sinclair, M. B. and Van Benthem, M. H. and Martinez, M. J. and Aragon, A. D. and Werner-Washburne, M.}
    18095 }
    18096 @article{Geisler2007,
    18097   number = {2},
    18098   year = {2007},
    18099   title = {Resolution of lambda/10 in fluorescence microscopy using fast single molecule photo-switching},
    18100   pages = {223-226},
    18101   journal = {Applied Physics a-Materials Science and Processing},
    18102   volume = {88},
    18103   author = {Geisler, C. and Schonle, A. and von Middendorff, C. and Bock, H. and Eggeling, C. and Egner, A. and Hell, S. W.}
    18104 }
    18105 @article{Metzger1992,
    18106   year = {1992},
    18107   title = {Transmembrane signalling: the joy of aggregation},
    18108   pages = {1477-1487},
    18109   journal = {Journal of Immunology },
    18110   volume = {149},
    18111   author = {Metzger, H.}
    18112 }
    18113 @article{Hanser2004,
    18114   year = {2004},
    18115   title = {Phase-retrieved pupil functions in wide-field fluorescence microscopy},
    18116   pages = {32-48},
    18117   journal = {Journal of Microscopy-Oxford},
    18118   volume = {216},
    18119   author = {Hanser, B. M. and Gustafsson, M. G. L. and Agard, D. A. and Sedat, J. W.}
    18120 }
    18121 @book{Bharucha-Reid1960,
    18122   year = {1960},
    18123   title = {Elements of the Theory of Markov Processes and Their Applications},
    18124   publisher = {New York: McGraw-Hill},
    18125   author = {Bharucha-Reid, A. T}
    18126 }
    18127 @article{Herring2010,
    18128   year = {2010},
    18129   title = {Coherent electron interference from amorphous
    18130 TEM specimens},
    18131   journal = {Journal of Electron Microscopy},
    18132   author = {Herring, R.A. and Saitoh, K. and Tanaka, N. and Tanji, T.}
    18133 }
    18134 @article{Schmidt2008,
    18135   number = {6},
    18136   year = {2008},
    18137   title = {Spherical nanosized focal spots unravels the interior of cells},
    18138   pages = {539-544},
    18139   journal = {Nature Methods},
    18140   volume = {5},
    18141   author = {Schmidt, R. and Wurm, C.A. and Jakobs, S. and Engelhardt, J. and Egner, A. and Hell, S.W.}
    18142 }
    18143 @article{Kner2009,
    18144   number = {5},
    18145   year = {2009},
    18146   title = {Super-resolution video microscopy of live cells by structured illumination},
    18147   pages = {339-344},
    18148   journal = {Nature Methods},
    18149   volume = {6},
    18150   author = {Kner, P. and Chhun, B.B. and Griffs, E.R. and Winoto, L. and Gustafsson, M.G.L.}
    18151 }
    18152 @article{Heintzmann2009,
    18153   year = {2009},
    18154   title = {Subdiffraction resolution in continuous samples},
    18155   pages = {362-364},
    18156   journal = {Nature Photonics},
    18157   volume = {3},
    18158   author = {Heintzmann, R. and Gustafsson, M.G.L.}
    18159 }
    18160 @article{Boulanger2010,
    18161   number = {2},
    18162   year = {2010},
    18163   title = {Patch-Based Nonlocal Functional for Denoising
    18164 Fluorescence Microscopy Image Sequences},
    18165   pages = {442-454},
    18166   journal = {IEEE Transactions on Medical Image Processing},
    18167   volume = {29},
    18168   author = {Boulanger, J. and Kervrann, C. and Bouthemy, P. and Elbau, P. and Sibarita, J.-B. and Salamero, J.}
    18169 }
    18170 @article{Carlton2010,
    18171   year = {2010},
    18172   title = {Fast live simultaneous multiwavelength four-dimensional optical microscopy},
    18173   journal = {Proceedings of the National Academy of Sciences},
    18174   author = {Carlton, P.M. and Boulanger, J. and Kervrann, C. and Sibarita, J.-B. and Salamero, J. and Gordon-Messer, S. and Bressan, D. and Haber, J.E. and Haase, S. and Shao, L. and Winoto, L. and Matsuda, A. and Kner, P. and Uzawa, S. and Gustafsson, M.G.F. and Kam, Z. and Agard, D.A. and Sedat, J.W.}
    18175 }
    18176 @article{Grabenbauer2005,
    18177   year = {2005},
    18178   title = {Correlative microscopy and electron tomography of GFP through photooxidation},
    18179   pages = {857-862},
    18180   journal = {Nature Methods},
    18181   volume = {2},
    18182   author = {Grabenbauer, M. and Geerts, W.J. and Fernadez-Rodriguez, J. and Hoenger, A. and Koster, A.J. and Nilsson, T.}
    18183 }
    18184 @article{Folling2008,
    18185   year = {2008},
    18186   title = {Fluorescence nanoscopy by ground-state depletion and single-molecule return},
    18187   pages = {943-945},
    18188   journal = {Nature Methods},
    18189   volume = {5},
    18190   author = {{F\"olling}, J. and Bossi, M. and Bock, H. and Medda, R. and Wurm, C.A. and Hein, B. and Jacobs, S. and Eggeling, C. and Hell, S.W.}
    18191 }
    18192 @article{Agronskaia2008,
    18193   number = {2},
    18194   year = {2008},
    18195   title = {Integrated fluorescence and transmission electron microscopy},
    18196   pages = {183-189},
    18197   journal = {Journal of Structural Biology},
    18198   volume = {164},
    18199   author = {Agronskaia, A.V. and Valtentijn, J.A. and Driel, L.F. van and Schneidenberg, C. and Humbel, B.M. and Henegouwen, P. and Verkleij, A.J. and Koster, A.J. and Gerritsen, H.C.}
    18200 }
    18201 @article{Aguet2009,
    18202   number = {8},
    18203   year = {2009},
    18204   title = {Super-resolution orientation estimation and localization of fluorescent dipoles using 3-D steerable filters},
    18205   pages = {6829},
    18206   journal = {Optics Express},
    18207   volume = {17},
    18208   author = {Aguet, F. and Geissbuhler, S. and Marki, I. and Lasser, T. and Unser, M.}
    18209 }
    18210 @article{Giepmans2005,
    18211   year = {2005},
    18212   title = {Correlated light and electron microscopic imaging of multiple endogenous proteins using quantum dots},
    18213   pages = {743-749},
    18214   journal = {Nature Methods},
    18215   volume = {10},
    18216   author = {Giepmans, B.N.G. and Deerinck, T.J. and Smarr, B.L. and Jones, Y.Z. and Ellisman, M.H.}
    18217 }
    18218 @article{Stallinga2004,
    18219   number = {9},
    18220   year = {2004},
    18221   title = {Light distribution close to focus in biaxially       birefringent media
    18222 },
    18223   pages = {1785-1788},
    18224   journal = {Journal of the Optical Society of America A},
    18225   volume = {21},
    18226   author = {Stallinga, S.}
    18227 }
    18228 @article{Wang2010,
    18229   number = {4},
    18230   year = {2010},
    18231   title = {In vitro and in vivo imaging with quantum dots },
    18232   pages = {1397-1415},
    18233   journal = {Analytical and Bioanalytical Chemistry },
    18234   volume = {397},
    18235   author = {Wang, C. and Gao, X. and Su, X.}
    18236 }
    18237 @article{Jamieson2007,
    18238   number = {31},
    18239   year = {2007},
    18240   title = {Biological applications of quantum dots },
    18241   pages = {4717-4732},
    18242   journal = {Biomaterials},
    18243   volume = {28},
    18244   author = {Jamieson, T. and Bakhshi, R. and Petrova, D. and Pocock, R. and Imani, M. and Seifalian, A.M.}
    18245 }
    18246 @article{Abraham2009,
    18247   number = {26},
    18248   year = {2009},
    18249   title = {Quantitative study of single molecule location estimation techniques },
    18250   pages = {23352-23373},
    18251   journal = {Optics Express},
    18252   volume = {17},
    18253   author = {Abraham, A.V. and Ram, S. and Chao, J. and Ward, E.S. and Ober, R.J.}
    18254 }
    18255 @article{Chao2009,
    18256   number = {26},
    18257   year = {2009},
    18258   title = {A comparative study of high resolution microscopy imaging modalities using a three-dimensional resolution measure},
    18259   pages = {24377-24401},
    18260   journal = {Optics Express},
    18261   volume = {17},
    18262   author = {Chao, J. and Ram, S. and Ward, E.S. and Ober, R.J.}
    18263 }
    18264 @article{Ram2008,
    18265   number = {12},
    18266   year = {2008},
    18267   title = {High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells },
    18268   pages = {6025-6043},
    18269   journal = {Biophysical Journal},
    18270   volume = {95},
    18271   author = {Ram, S. and Prabhar, P. and Chao, J. and Ward, E.S. and Ober, R.J.}
    18272 }
    18273 @article{Wilson1997,
    18274   year = {1997},
    18275   title = {The imaging of dielectric point scatterers in conventional and confocal polarisation microscopes},
    18276   pages = {298-313},
    18277   journal = {Optics Communications},
    18278   volume = {141},
    18279   author = {Wilson, T. and Juskaitis, R. and Higdon, P.D.}
    18280 }
    18281 @article{Stallinga2010,
    18282   number = {24},
    18283   year = {2010},
    18284   title = {Accuracy of the {Gaussian} Point Spread Function model in {2D} localization microscopy
    18285 },
    18286   pages = {24461-24476},
    18287   journal = {Optics Express},
    18288   volume = {18},
    18289   author = {Stallinga, S. and Rieger, B.}
    18290 }
    18291 @article{Barrett1995,
    18292   number = {5},
    18293   year = {1995},
    18294   title = {Objective assessment of image quality. II. Fisher information, Fourier crosstalk, and
    18295 figures of merit for task performance},
    18296   pages = {834-853},
    18297   journal = {Journal of the Optical Society of America A},
    18298   volume = {12},
    18299   author = {Barrett, H. H. and Denny, J.L. and Wagner, R.F. and Myers, K.J.}
    18300 }
    18301 @article{Foreman2007,
    18302   number = {21},
    18303   year = {2007},
    18304   title = {Photon statistics in single molecule
    18305 orientational imaging},
    18306   pages = {13597-13606},
    18307   journal = {Optics Express},
    18308   volume = {15},
    18309   author = {Foreman, M.R. and Sherif, S.S. and {T\"or\"ok}, P.}
    18310 }
    18311 @article{Haeberle2003,
    18312   number = {22},
    18313   year = {2003},
    18314   title = {Point spread function of optical microscopes
    18315 imaging through stratified media},
    18316   pages = {2964-2969},
    18317   journal = {Optics Express},
    18318   volume = {11},
    18319   author = {{Haeberl\'e}, O. and Ammar, M. and Furukawa, H. and Tenjimbayashi, K. and {T\"or\"ok}, P.}
    18320 }
    18321 @article{McGuire1994,
    18322   number = {22},
    18323   year = {1994},
    18324   title = {Polarization aberrations.
    18325 1. Rotationally symmetric optical systems},
    18326   pages = {5080-5100},
    18327   journal = {Applied Optics},
    18328   volume = {33},
    18329   author = {McGuire, J.P. Jr. and Chipman, R.A.}
    18330 }
    18331 @article{McGuire1994a,
    18332   number = {22},
    18333   year = {1994},
    18334   title = {Polarization aberrations.
    18335 2. Tilted and decentered optical systems},
    18336   pages = {5101-5107},
    18337   journal = {Applied Optics},
    18338   volume = {33},
    18339   author = {McGuire, J.P. Jr. and Chipman, R.A.}
    18340 }
    18341 @article{Muller2005,
    18342   year = {2005},
    18343   title = {Measures of performance in nonlinear estimation
    18344 tasks: prediction of estimation performance at low signal-to-noise ratio},
    18345   pages = {3697-3715},
    18346   journal = {Physics in Medicine and Biology},
    18347   volume = {50},
    18348   author = {{M\"uller}, S.P. and Abbey, C.K. and Rybicki, F.J. and Moore, S.C. and Kijewski, M.F.}
    18349 }
    18350 @article{Ji2010,
    18351   number = {2},
    18352   year = {2010},
    18353   title = {Adaptive optics via pupil segmentation for
    18354 high-resolution imaging in biological tissues},
    18355   pages = {141-150},
    18356   journal = {Nature Methods},
    18357   volume = {7},
    18358   author = {Ji, N. and Milkie, D.E. and Betzig, E.}
    18359 }
    18360 @article{Wombacher2010,
    18361   number = {9},
    18362   year = {2010},
    18363   title = {Live-cell super-resolution imaging with trimethoprim conjugates},
    18364   pages = {717-722},
    18365   journal = {Nature Methods},
    18366   volume = {7},
    18367   author = {Wormbacher, R. and Heidbreder, M. and Linde, S. van de and Sheetz, M.P. and Heilemann, M. and Cornish, V.W. and Sauer, M.}
    18368 }
    18369 @article{Henriques2010,
    18370   number = {5},
    18371   year = {2010},
    18372   title = {Quick{PALM}: 3D real-time photoactivation nanoscopy image processing in {ImageJ}},
    18373   pages = {339-340},
    18374   journal = {Nature Methods},
    18375   volume = {7},
    18376   author = {Henriques, R. and Lelek, M. and Fornasiero, E.F. and Valtorta, F. and Zimmer, C. and Mhlanga, M.M.}
    18377 }
    18378 @article{Dertinger2009,
    18379   number = {52},
    18380   year = {2009},
    18381   title = {Fast, background-free, {3D} super-resolution optical fluctuation imaging {(SOFI)}},
    18382   pages = {22287-22292},
    18383   journal = {Proceedings of the National Academy of Sciences USA},
    18384   volume = {106},
    18385   author = {Dertinger, T. and Colyer, R. and Iyer, G. and Weiss, S. and Enderlein, J.}
    18386 }
    18387 @article{Dertinger2010,
    18388   number = {18},
    18389   year = {2010},
    18390   title = {Achieving increased resolution and more pixels
    18391 with Superresolution Optical Fluctuation
    18392 Imaging {(SOFI)}},
    18393   pages = {18875-11885},
    18394   journal = {Optics Express},
    18395   volume = {18},
    18396   author = {Dertinger, T. and Colyer, R. and Vogel, R. and  Enderlein, J. and Weiss, S.}
    18397 }
    18398 @article{Landau1967,
    18399   number = {1},
    18400   year = {1967},
    18401   title = {Necessary  density conditions for sampling and interpolation of certain entire function},
    18402   pages = {37-52},
    18403   journal = {Acta Mathematica},
    18404   volume = {117},
    18405   author = {Landau, H.}
    18406 }
    18407 @article{Heilemann2008,
    18408   number = {33},
    18409   year = {2008},
    18410   title = {Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes},
    18411   pages = {6172-6176},
    18412   journal = {Angewannte Chemie},
    18413   volume = {47},
    18414   author = {Heilemann, M. and Linde, S. van de and {Sch\"uttpelz}, M. and Kasper, R. and Seefeldt, B. and Mukherjee, A. and Tinnefeld, P. and Sauer, M.}
    18415 }
    18416 @article{Gustafsson2000,
    18417   number = {2},
    18418   year = {2000},
    18419   title = {Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy},
    18420   pages = {82-87},
    18421   journal = {Journal of Microscopy},
    18422   volume = {198},
    18423   author = {Gustafsson, M.G.L.}
    18424 }
    18425 @article{Dedecker2007,
    18426   year = {2007},
    18427   title = {Orientational effects in the excitation
    18428 and de-excitation of single molecules interacting with donut-mode laser beams},
    18429   pages = {3372-3383},
    18430   journal = {Optics Express},
    18431   volume = {15},
    18432   author = {Dedecker, P. and Muls, B. and Hofkens, J. and  Enderlein, J. and Hotta, J. }
    18433 }
    18434 @article{Smal2010,
    18435   year = {2010},
    18436   title = {Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy},
    18437   pages = {282-301},
    18438   journal = {IEEE Transactions on Medical Imaging},
    18439   volume = {29},
    18440   author = {Smal, I. and Loog, M. and Niessen, W.J.  and  Meijering, E.}
    18441 }
    18442 @article{Akhmanova2008,
    18443   year = {2008},
    18444   title = {Tracking the ends: a dynamic protein network controls the fate of microtubule tips},
    18445   pages = {309-322},
    18446   journal = {Nature Reviews Molecular Cell Biology},
    18447   volume = {9},
    18448   author = {Akhmanova, A. and  Steinmetz, M.O.}
    18449 }
    18450 @article{Heuvel2008,
    18451   year = {2008},
    18452   title = {Single-Molecule Observation of Anomalous Electrohydrodynamic Orientation of Microtubules
    18453 },
    18454   pages = {118301},
    18455   journal = {Physical Review Letters},
    18456   volume = {101},
    18457   author = {Heuvel, M.G.L. van den and Bondesan, R. and Cosentino Langomarsino, M. and Dekker, C.}
    18458 }
    18459 @article{Lupini2008,
    18460   number = {6},
    18461   year = {2008},
    18462   title = {Rapid autotuning for crystalline specimens from an inline hologram},
    18463   pages = {195-201},
    18464   journal = {Journal of Electron Microscopy},
    18465   volume = {57},
    18466   author = {Lupini, A.R. and Pennycook, S.J.}
    18467 }
    18468 @article{Hell2009a,
    18469   year = {2009},
    18470   title = {Diffraction-unlimited three-dimensional optical
    18471 nanoscopy with opposing lenses},
    18472   pages = {381-387},
    18473   journal = {Nature Photonics},
    18474   volume = {3},
    18475   author = {Hell, S.W. and Schmidt, R. and Egner, A.}
    18476 }
    18477 @article{Manghi2010,
    18478   year = {2010},
    18479   title = {Probing {DNA} conformational changes
    18480 with high temporal resolution by tethered
    18481 particle motion},
    18482   pages = {046003},
    18483   journal = {Physical Biology},
    18484   volume = {7},
    18485   author = {Manghi, M. and Tardin, C. and Baglio, J. and Rousseau, P. and Salome, L. and Destainville, N.}
    18486 }
    18487 @article{Destainville2009,
    18488   number = {11},
    18489   year = {2009},
    18490   title = {Microscopic Mechanism for Experimentally Observed Anomalous Elasticity of DNA in Two Dimensions},
    18491   pages = {4464-4469},
    18492   journal = {Biophysical Journal},
    18493   volume = {96},
    18494   author = {Destainville, Nicolas and Manghi, Manoel and Palmeri, John}
    18495 }
    18496 @article{Barthel2010,
    18497   year = {2010},
    18498   title = {Aberration measurement in {HRTEM}: {Implementation} and diagnostic use of numerical procedures for the highly precise recognition of diffractogram patterns},
    18499   pages = {27-46},
    18500   journal = {Ultramicroscopy},
    18501   volume = {111},
    18502   author = {Barthel, J. and Thust, A.}
    18503 }
    18504 @article{Perfetti2010,
    18505   year = {2010},
    18506   title = {X-ray micro tomography and image analysis as complementary methods for morphological characterization and coating thickness measurement
    18507 of coated particles},
    18508   pages = {663-675},
    18509   journal = {Advanced Powder Technology},
    18510   volume = {21},
    18511   author = {Perfetti, G. and Casteele, E. van de and Rieger, B. and Wildeboer, W.J. and Meesters, G.M.H.}
    18512 }
    18513 @article{Stallinga2005,
    18514   year = {2005},
    18515   title = {Compact description of substrate-related aberrations in high numerical aperture optical disk readout},
    18516   pages = {949-958},
    18517   journal = {Applied Optics},
    18518   volume = {44},
    18519   author = {Stallinga, S.}
    18520 }
    18521 @article{Muhlich2009,
    18522   number = {7},
    18523   year = {2009},
    18524   title = {Analysis of Multiple Orientations},
    18525   pages = {1424-1437},
    18526   journal = {IEEE Transactions on Image Processing},
    18527   volume = {18},
    18528   author = {M{\"u}hlich, M. and Aach, T.}
    18529 }
    18530 @inproceedings{Franken2007,
    18531   series = {4485},
    18532   year = {2007},
    18533   title = {Nonlinear diffusion on the 2D Euclidean Motion group},
    18534   booktitle = {LNCS},
    18535   pages = {461-472},
    18536   author = {Franken, E.M. and Duits, R. and Haar Romenij, B.M. ter}
    18537 }
    18538 @inproceedings{Franken2006,
    18539   series = {3954},
    18540   year = {2006},
    18541   title = {An Efficient Method for Tensor Voting using Steerable Filters},
    18542   booktitle = {LNCS},
    18543   pages = {228-240},
    18544   author = {Franken, E.M.  and  Almsick, M.A. van and  Rongen, P.M.J. and Florack, L.M.J. and  Haar Romenij, B.M. ter}
    18545 }
    18546 @inproceedings{Faas2007,
    18547   series = {4678},
    18548   year = {2007},
    18549   title = {A crossing detector based on the structure tensor},
    18550   booktitle = {LNCS},
    18551   pages = {212-220},
    18552   editor = {Blanc-Talon, J.},
    18553   author = {Faas, F.G.A. and Vliet, L.J. van}
    18554 }
    18555 @inproceedings{Herberthsson2006,
    18556   series = {SSBA},
    18557   month = {March},
    18558   year = {2006},
    18559   title = {Pairs of Orientation in the Plane},
    18560   booktitle = {Proceedings of the {SSBA} Symposium on Image Analysis},
    18561   author = {Herberthsson, M. and Brun, A. and Knutsson, H.}
    18562 }
    18563 @book{Stein1971,
    18564   year = {1971},
    18565   title = {Introduction to Fourier Analysis on Euclidean Spaces},
    18566   publisher = {Princeton University Press},
    18567   author = {Stein, E. and Stein, E.M. and Weiss, G.}
    18568 }
    18569 @article{Cordes2010a,
    18570   year = {2010},
    18571   title = {Resolving Single-Molecule Assembled Patterns with Superresolution Blink-Microscopy},
    18572   pages = {645-651},
    18573   journal = {NanoLetters},
    18574   volume = {10},
    18575   author = {Cordes, T. and Strackharn, M. and Stahl, S.W.  and Summerer, W. and Steinhauer, C. and  Forthmann, C. and Puchner, E.M. and Vogelsang, J. and Gaub H.E. and  Tinnefeld, P.}
    18576 }
    18577 @article{Luengo2010,
    18578   number = {6},
    18579   year = {2010},
    18580   title = {Constrained and Dimensionality-Independent Path Openings},
    18581   pages = {1587-1595},
    18582   journal = {IEEE Transactions on Image Processing},
    18583   volume = {19},
    18584   author = {Luengo Hendriks, C.L.}
    18585 }
    18586 @article{Luengo2007a,
    18587   year = {2007},
    18588   title = {Improving the accuracy of isotropic granulometries},
    18589   pages = {865-872},
    18590   journal = {Pattern Recognition Letters},
    18591   volume = {28},
    18592   author = {Luengo Hendriks, C.L. and Kempen, G.M.P. and Vliet, L.J. van}
    18593 }
    18594 @article{Luengo2007,
    18595   number = {19},
    18596   year = {2007},
    18597   title = {Automatic channel unmixing for high-throughput quantitative analysis of fluorescence images},
    18598   pages = {12306-123117},
    18599   journal = {Optics Express},
    18600   volume = {15},
    18601   author = {Luengo Hendriks, C.L. and {Ker\"a}nen, S.V.E. and Biggin, M.D. and Knowles, D.W.}
    18602 }
    18603 @article{Caarls2010,
    18604   year = {2010},
    18605   title = {Characterization of Coupled Ground State and Excited State Equilibria by Fluorescence Spectral Deconvolution},
    18606   pages = {181-190},
    18607   journal = {Journal of Fluorescence},
    18608   volume = {20},
    18609   author = {Caarls, W. and Celej, M.S. and Demchenko, A.P. and Jovin, T.M.}
    18610 }
    18611 @article{Celej2009,
    18612   year = {2009},
    18613   title = {A Triple-Emission Fluorescent Probe Reveals Distinctive Amyloid Fibrillar Polymorphism of Wild-Type R-Synuclein and Its Familial Parkinson's Disease Mutants},
    18614   pages = {7465-7472},
    18615   journal = {Biochemistry},
    18616   volume = {48},
    18617   author = {Celej, M.S. and Caarls, W. and Demchenko, A.P. and Jovin, T.M.}
    18618 }
    18619 @article{Nagy2010,
    18620   number = {38},
    18621   year = {2010},
    18622   title = {Distribution of resting and ligand-bound {ErbB1} and {ErbB2} receptor tyrosine kinases in living cells using number and brightness analysis},
    18623   pages = {16524-16529},
    18624   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    18625   volume = {107},
    18626   author = {Nagy, P. and Claus, J. and Jovin, T.M. and Arndt-Jovin, D.J.}
    18627 }
    18628 @article{Finzi2010,
    18629   number = {25},
    18630   year = {2010},
    18631   title = {Single-molecule Approaches to Probe the Structure, Kinetics, and Thermodynamics of Nucleoprotein Complexes That Regulate Transcription},
    18632   pages = {18973-18978},
    18633   journal = {JOURNAL OF BIOLOGICAL CHEMISTRY},
    18634   volume = {285},
    18635   author = {Finzi, L. and Dunlap, D.D.}
    18636 }
    18637 @article{Engelhardt2011,
    18638   year = {2010},
    18639   title = {Molecular Orientation Affects Localization Accuracy in Superresolution Far-Field Fluorescence Microscopy},
    18640   pages = {209-213},
    18641   journal = {NanoLetters},
    18642   volume = {11},
    18643   author = {Engelhardt, J. and Keller, J. and Hoyer, P. and Reuss, M. and Staudt, T. and Hell, S.W.}
    18644 }
    18645 @article{Lindner2011,
    18646   year = {2011},
    18647   title = {Force-free measurements of the conformations of {DNA} molecules tethered to a wall},
    18648   pages = {011916},
    18649   journal = {Physical Review E},
    18650   volume = {83},
    18651   author = {Lindner, M. and Nir, G. and Medalion, S. and Dietrich, H.R.C. and Rabin, Y. and Garini, Y.}
    18652 }
    18653 @article{Beleggia2004,
    18654   year = {2004},
    18655   title = {On the transport of intensity technique for phase retrieval},
    18656   pages = {37-49},
    18657   journal = {Ultramicroscopy},
    18658   volume = {102},
    18659   author = {Beleggia, M. and Schofield, M.A. and Volkov, V.V. and Zhu, Y.}
    18660 }
    18661 @article{Bronnikov2002,
    18662   year = {2002},
    18663   title = {Theory of quatitative phase-contrast computed tomography},
    18664   pages = {472-480},
    18665   journal = {Journal of the Optical Society of America A},
    18666   volume = {19},
    18667   author = {Bronnikov, A.V.}
    18668 }
    18669 @article{Donoho2006,
    18670   number = {4},
    18671   year = {2006},
    18672   title = {Compressed Sensing},
    18673   pages = {1289-1306},
    18674   journal = {IEEE Transactions of Information Theory},
    18675   volume = {52},
    18676   author = {Donoho, D.L.}
    18677 }
    18678 @article{Jesacher2005,
    18679   year = {2005},
    18680   title = {Shadow Effects in Spiral Phase Contrast Microscopy},
    18681   pages = {233902},
    18682   journal = {Physics Review Letters},
    18683   volume = {94},
    18684   author = {Jesacher, A. and {F\"urhapter}, S. and Bernet, S. and Ritsch-Marte, M.}
    18685 }
    18686 @article{Furhapter2005,
    18687   number = {15},
    18688   year = {2005},
    18689   title = {Spiral interferometry},
    18690   pages = {1953-1955},
    18691   journal = {Optics Letters},
    18692   volume = {30},
    18693   author = {{F\"urhapter}, S. and Jesacher, A. and Bernet, S. and Ritsch-Marte, M.}
    18694 }
    18695 @article{Aarts2011,
    18696   year = {2011},
    18697   title = {Three-dimensional atomic imaging of crystalline
    18698 nanoparticles},
    18699   journal = {Nature},
    18700   author = {Aaarts, S. van and Batenburg, K.J. and Rossell, M.D. and Erni, R. and Tendeloo, G. van}
    18701 }
    18702 @article{jensen_helium,
    18703   year = {2006},
    18704   title = {A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography},
    18705   pages = {231-240},
    18706   journal = {Journal of Structural Biology},
    18707   volume = {153},
    18708   author = {Iancu, C.V. and Wright, E.R. and Heymann, J.B. and Jensen, G.J.}
    18709 }
    18710 @inproceedings{Noorden2010,
    18711   series = {LNCS 6362},
    18712   month = {September 20-24},
    18713   year = {2010},
    18714   title = {A Comparison of the Cingulum in Amyotrophic Lateral Sclerosis using Kernel Matchin},
    18715   booktitle = {Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010},
    18716   pages = {249-256},
    18717   editor = {T. Jiang, T. and Navab, N. and Pluim, J.P.W. and  Viergever, M.A.},
    18718   address = {Beijing, China},
    18719   publisher = {Springer},
    18720   author = {Noorden, S. van and Caan, M.W.A. and Graaf, M. van der and Vliet, L.J. van and Vos, F.M.}
    18721 }
    18722 @article{McMorran2011,
    18723   year = {2011},
    18724   title = {Electron Vortex Beams with High Quanta of Orbital Angular Momentum},
    18725   pages = {192-195},
    18726   journal = {Science},
    18727   volume = {331},
    18728   author = {McMorran, B.J. and Agrawal, A. and Anderson, I.M. and Herzing, A.A. and Lezec, H.J. and McClelland, J.J. and unguris, J.}
    18729 }
    18730 @article{Voortman2011,
    18731   year = {2011},
    18732   title = {A fast algorithm for computing and correcting the
    18733 {CTF} for tilted, thick specimens in {TEM}},
    18734   pages = {1029-1036},
    18735   journal = {Ultramicroscopy},
    18736   volume = {111},
    18737   author = {Voortman, L.M. and Stallinga, S. and Schoenmakers, R.H.M. and Vliet, L.J. van and Rieger, B.}
    18738 }
    18739 @article{Karuppasamy2011,
    18740   year = {2011},
    18741   title = {Radiation damage in single-particle cryo-electron
    18742 microscopy: effects of dose and dose rate},
    18743   pages = {398-412},
    18744   journal = {Journal of Synchrotron Radiation},
    18745   volume = {18},
    18746   author = {Karuppasamy, M. and Karimi Nejadasl, F and Vulovic, M. and Koster, A.J. and Ravelli, R.B.G. }
    18747 }
    18748 @article{Krysting2011,
    18749   year = {2011},
    18750   title = {Heat Profiling of Three-Dimensionally Optically Trapped Gold Nanoparticles using Vesicle Cargo Release},
    18751   pages = {888-892},
    18752   journal = {Nano Letters},
    18753   volume = {11},
    18754   author = {Krysting, A. and Bendix, P.M. and Stamou, D.G. and Oddershede, L.B.}
    18755 }
    18756 @article{Schutz2001,
    18757   number = {2},
    18758   year = {2001},
    18759   title = {Imaging Single Molecules in Three Dimensions},
    18760   pages = {69-74},
    18761   journal = {Single Molecules},
    18762   volume = {2},
    18763   author = {{Sch\"utz}, G.J. and Axman M. and Schindler, H.}
    18764 }
    18765 @article{vanElburg2007,
    18766   number = {1},
    18767   year = {2007},
    18768   title = {Improved correction of axial geometrical distortion in index-mismatched fluorescent confocal            microscopic images using high-aperture objective lenses},
    18769   pages = {45-54},
    18770   journal = {Journal of Microscopy},
    18771   volume = {228},
    18772   author = {van Elburg, H.J. and Kuypers, L.C. and Decraemer, W.F. and Dirckx, J.J.J.}
    18773 }
    18774 @article{vandenBroek2006,
    18775   number = {1},
    18776   year = {2006},
    18777   title = {Real-time observation of {DNA} looping dynamics of Type {IIE} restriction enzymes {NaeI} and {NarI}},
    18778   pages = {167-174},
    18779   journal = {Nucleic Acids Research},
    18780   volume = {34},
    18781   author = {van den Broek, B. and Vanzi, F. and Normanno, D. and Pavone, F.S. and Wuite, G.J.L.}
    18782 }
    18783 @article{Finzi1995,
    18784   number = {5196},
    18785   year = {1995},
    18786   title = {Measurement of Lactose Repressor-Mediated Loop Formation and Breakdown in Single DNA Molecules},
    18787   pages = {378-380},
    18788   journal = {Science},
    18789   volume = {267},
    18790   author = {Finzi, L. and Gelles, J.}
    18791 }
    18792 @article{deGennes1976a,
    18793   number = {4},
    18794   year = {1976},
    18795   title = {Dynamics of Entangled Polymer Solutions. {I.} The Rouse Model},
    18796   pages = {587-593},
    18797   journal = {Macromolecules},
    18798   volume = {9},
    18799   author = {De Gennes, P.G.}
    18800 }
    18801 @article{deGennes1976b,
    18802   number = {4},
    18803   year = {1976},
    18804   title = {Dynamics of Entangled Polymer Solutions. {II.} Inclusion of Hydrodynamic Interactions},
    18805   pages = {594-598},
    18806   journal = {Macromolecules},
    18807   volume = {9},
    18808   author = {De Gennes, P.G.}
    18809 }
    18810 @article{Robertson2006,
    18811   number = {19},
    18812   year = {2006},
    18813   title = {Diffusion of isolated DNA molecules: {Dependence} on length and topology},
    18814   pages = {7310-7314},
    18815   journal = {Proceedings of the National Academy of Sciences of the USA},
    18816   volume = {103},
    18817   author = {Robertson, R.M.}
    18818 }
    18819 @article{Derjaguin1941,
    18820   year = {1941},
    18821   title = {Theory of the stability of strongly charged lyophobic sols and of the adhesion of strongly charged      particles in solutions of electrolytes.},
    18822   journal = {Acta Physico Chimica URSS},
    18823   volume = {14},
    18824   author = {Derjaguin, B. and Landau, L.}
    18825 }
    18826 @book{Verwey1948,
    18827   year = {1948},
    18828   title = {Theory of the stability of lyophobic colloids},
    18829   publisher = {Elsevier},
    18830   author = {Verwey, E.J.W. and Overbeek, J.Th.G.}
    18831 }
    18832 @article{Debye1923,
    18833   year = {1923},
    18834   title = {The theory of electrolytes. {I.} Lowering of freezing point and related phenomena},
    18835   pages = {185-206},
    18836   journal = {Physikalische Zeitschrift},
    18837   volume = {24},
    18838   author = {Debye, P. and {H\"uckel}, E.}
    18839 }
    18840 @book{Lyklema1991,
    18841   year = {1991},
    18842   title = {Fundamentals of Interface and Colloid Science},
    18843   volume = {Volume I: Fundamentals},
    18844   address = {London, UK},
    18845   publisher = {Academic Press Limited},
    18846   author = {Lyklema, J. and van Leeuwen, H.P. and van Vliet, T. and Cazabat, A.-M}
    18847 }
    18848 @book{Happel1973,
    18849   edition = {2nd edition},
    18850   year = {1973},
    18851   title = {Low Reynolds number hydrodynamics},
    18852   address = {Leyden, The Netherlands},
    18853   publisher = {Noordhoff},
    18854   author = {Happel, John}
    18855 }
    18856 @article{Bevan2000,
    18857   number = {3},
    18858   year = {2000},
    18859   title = {Hindered diffusion of colloidal particles very near to a wall: Revisited},
    18860   pages = {1128-1236},
    18861   journal = {Journal of Chemical Physics},
    18862   volume = {113},
    18863   author = {Bevan, Michael A. and Prieve, Dennis C.}
    18864 }
    18865 @article{Stallinga2005a,
    18866   year = {2005},
    18867   title = {Finite conjugate spherical aberration compensation in high numerical-aperture optical disc read-out},
    18868   pages = {7307-7312},
    18869   journal = {Applied Optics},
    18870   volume = {44},
    18871   author = {Stallinga, S.}
    18872 }
    18873 @article{Fan2009,
    18874   number = {5},
    18875   year = {2009},
    18876   title = {Studying {RecBCD} Helicase Translocation Along {chi-DNA} Using Tethered Particle Motion with a Stretching Force},
    18877   pages = {1875-1883},
    18878   journal = {Biophysical Journal},
    18879   volume = {96},
    18880   author = {Fan, Hsiu-Fang and Li, Hung-Wen}
    18881 }
    18882 @article{Geggier2010,
    18883   number = {35},
    18884   year = {2010},
    18885   title = {Sequence dependence of {DNA} bending rigidity},
    18886   pages = {15421-15426},
    18887   journal = {Proceedings of the National Academy of Sciences of the USA},
    18888   volume = {107},
    18889   author = {Geggier, Stephanie and Vologodskii, Alexander}
    18890 }
    18891 @article{Smith1996b,
    18892   number = {4},
    18893   year = {1996},
    18894   title = {Dynamical Scaling of {DNA} Diffusion Coefficients},
    18895   pages = {1372-1373},
    18896   journal = {Macromolecules},
    18897   volume = {29},
    18898   author = {Smith, Douglas E. and Perkins, Thomas T. and Chu, Steven}
    18899 }
    18900 @article{Hodgson1991,
    18901   number = {10},
    18902   year = {1991},
    18903   title = {Dilute solution behavior of cyclic and linear polyelectrolytes},
    18904   pages = {7653-7663},
    18905   journal = {Journal of Chemical Physics},
    18906   volume = {95},
    18907   author = {Hodgson, Donald F. and Amis, Eric J.}
    18908 }
    18909 @inproceedings{Rieger2011,
    18910   series = {LNCS 6688},
    18911   month = {May 23-27},
    18912   year = {2011},
    18913   title = {Continuous orientation representation for arbitrary dimensions - a generalized Knutsson mapping},
    18914   booktitle = {Proceedings of the 17th Scandinavian Conference on Image Analysis, SCIA 2011},
    18915   pages = {774-783},
    18916   editor = {Heyden, A. and Kahl, F.},
    18917   address = {Heidelberg},
    18918   publisher = {Springer},
    18919   author = {Rieger, B. and Vliet, L.J. van and Verbeek, P.W.}
    18920 }
    18921 @book{FundFluidMech,
    18922   edition = {3rd},
    18923   year = {1998},
    18924   title = {Fundamentals of Fluid Mechanics},
    18925   address = {New York},
    18926   publisher = {John Wiley \& Sons, Inc},
    18927   author = {Munson, Bruce R. and Young, Donald F. and Okiishi, Theodore H.}
    18928 }
    18929 @article{Rosenthal2003,
    18930   number = {4},
    18931   year = {2003},
    18932   title = {Optimal Determination of Particle Orientation,
    18933 Absolute Hand, and Contrast Loss in Single-particle Electron Cryomicroscopy},
    18934   pages = {721-745},
    18935   journal = {Journal of Molecular Biology},
    18936   volume = {333},
    18937   author = {Rosenthal, P.B. and Henderson, R.}
    18938 }
    18939 @article{Wicker2009,
    18940   number = {18},
    18941   year = {2009},
    18942   title = {Characterisation of a resolution enhancing image inversion interferometer},
    18943   pages = {15491-15501},
    18944   journal = {Optics Express},
    18945   volume = {17},
    18946   author = {Wicker, K. and Sindbert, S. and Heintzmann, R.}
    18947 }
    18948 @article{Wicker2007,
    18949   number = {19},
    18950   year = {2007},
    18951   title = {Interferometric resolution improvement for confocal microscopes},
    18952   pages = {12206-12216},
    18953   journal = {Optics Express},
    18954   volume = {15},
    18955   author = {Wicker, K. and Heintzmann, R.}
    18956 }
    18957 @article{Schermelleh2010,
    18958   number = {2},
    18959   year = {2010},
    18960   title = {A guide to super-resolution fluorescence microscopy},
    18961   pages = {165-175},
    18962   journal = {The journal of cell biology},
    18963   volume = {190},
    18964   author = {Schermelleh, L. and Heintzmann, R. and Leonhardt, H.}
    18965 }
    18966 @article{Ruckstuhl2004,
    18967   number = {18},
    18968   year = {2004},
    18969   title = {Supercritical angle fluorescence {(SAF)} microscopy},
    18970   pages = {4246-4254},
    18971   journal = {Optics Express},
    18972   volume = {12},
    18973   author = {Ruckstuhl, T. and Verdes, D.}
    18974 }
    18975 @article{Rohrbach2009,
    18976   number = {19},
    18977   year = {2009},
    18978   title = {Artifacts resulting from imaging in scattering media: a theoretical prediction},
    18979   pages = {3041-3043},
    18980   journal = {Optics Letters},
    18981   volume = {34},
    18982   author = {Rohrbach, A.}
    18983 }
    18984 @article{Murdy2010,
    18985   year = {2010},
    18986   title = {Isotropic Diffraction-Limited Focusing Using a Single Objective Lens},
    18987   pages = {203903},
    18988   journal = {Physical Review Letters},
    18989   volume = {105},
    18990   author = {Murdy, E. and Moral, E. le and Ferrand, P. and Chaumet, P.C. and Sentenac, A. }
    18991 }
    18992 @article{Min2009,
    18993   number = {22},
    18994   year = {2009},
    18995   title = {Imaging chromophores with undetectable fluorescence by stimulated emission microscopy},
    18996   pages = {1105-1109},
    18997   journal = {Nature},
    18998   volume = {461},
    18999   author = {Min, W. and Lu, S. and Chong, S. and Roy, R. and Holtom, G.R. and Xie, X.S.}
    19000 }
    19001 @inbook{Manley2010,
    19002   series = {Methods in Enzymology},
    19003   year = {2010},
    19004   title = {Single-Particle Tracking Photoactivated Localization
    19005 Microscopy for Mapping Single-Molecule Dynamics},
    19006   pages = {109-120},
    19007   volume = {475},
    19008   chapter = {5},
    19009   publisher = {Elsevier},
    19010   author = {Manely, S. and Gillette, J.M. and Lippincott-Schwartz, J.}
    19011 }
    19012 @article{Luisier2007,
    19013   number = {3},
    19014   year = {2007},
    19015   title = {A New {SURE} Approach to Image Denoising:
    19016 Interscale Orthonormal Wavelet Thresholding},
    19017   pages = {593-606},
    19018   journal = {IEEE Transactions on Image Processing},
    19019   volume = {16},
    19020   author = {Luisier, F. and Blu, T. and Unser, M.}
    19021 }
    19022 @article{Krizek2011,
    19023   number = {4},
    19024   year = {2011},
    19025   title = {Minimizing detection errors in single molecule localization microscopy},
    19026   pages = {3226-3235},
    19027   journal = {Optics Express},
    19028   volume = {19},
    19029   author = {Krizek, P. and Raska, I. and Hagen, G.M}
    19030 }
    19031 @article{Kaufmann2011a,
    19032   year = {2011},
    19033   title = {Imaging label-free intracellular structures by localisation microscopy},
    19034   pages = {348-352},
    19035   journal = {Micron},
    19036   volume = {42},
    19037   author = {Kaufmann, R. and {M\"uller}, P. and Hausmann, M. and Cremer, C.}
    19038 }
    19039 @article{Kaufmann2011,
    19040   number = {1},
    19041   year = {2011},
    19042   title = {Analysis of {Her2/neu} membrane protein clusters in different types of breast cancer cells using localization microscopy},
    19043   pages = {46-54},
    19044   journal = {Journal of Microscopy},
    19045   volume = {242},
    19046   author = {Kaufmann, R. and {M\"uller}, P. and Hildenbrand, G. and Hausmann, M. and Cremer, C.}
    19047 }
    19048 @article{Fujita2007,
    19049   year = {2007},
    19050   title = {High-Resolution Confocal Microscopy by Saturated Excitation of Fluorescence},
    19051   pages = {228105},
    19052   journal = {Physical Review Letters},
    19053   volume = {99},
    19054   author = {Fujita, K. and Kobayashi, M. and Kawano, S. and YTamanaka, M. and Kawata, S.}
    19055 }
    19056 @article{Fahrbach2010,
    19057   year = {2010},
    19058   title = {Microscopy with self-reconstructing beams},
    19059   note = {DOI: 10.1038/NPHOTON.2010.204},
    19060   journal = {Nature photonics},
    19061   author = {Fahrbach, F.O. and Simon, P. and Rohrbach, A.}
    19062 }
    19063 @article{Debarre2007,
    19064   number = {13},
    19065   year = {2007},
    19066   title = {Image based adaptive optics through optimisation of low spatial frequencies},
    19067   pages = {8176-8190},
    19068   journal = {Optics Express},
    19069   volume = {15},
    19070   author = {Debarre, D. and Booth, M.J. and Wilson, T.}
    19071 }
    19072 @article{Cox2004,
    19073   year = {2004},
    19074   title = {Practical Limits of Resolution in Confocal and Non-Linear Microscopy},
    19075   pages = {18-22},
    19076   journal = {MICROSCOPY RESEARCH AND TECHNIQUE},
    19077   volume = {63},
    19078   author = {Cox, G. and Sheppard, C.J.R.}
    19079 }
    19080 @article{Cox1982,
    19081   number = {5},
    19082   year = {1982},
    19083   title = {Improvement in resolution by nearly confocal microscopy},
    19084   pages = {778-781},
    19085   journal = {Applied Optics},
    19086   volume = {21},
    19087   author = {Cox, I.J. and Sheppard, C.J.R. and Wilson, T.}
    19088 }
    19089 @article{Dobrucki2007,
    19090   year = {2007},
    19091   title = {Scattering of Exciting Light by Live Cells in Fluorescence Confocal Imaging: Phototoxic Effects and Relevance for {FRAP} Studies},
    19092   pages = {1778-1786},
    19093   journal = {Biophysical Journal},
    19094   volume = {93},
    19095   author = {Dobrucki, J.W. and Feret, D. and Noatynska, A.}
    19096 }
    19097 @phdthesis{Wicker2010,
    19098   month = {October},
    19099   year = {2010},
    19100   title = {Increasing resolution and light efficiency
    19101 in fluorescence microscopy},
    19102   address = {United Kingdom},
    19103   school = {King's College London},
    19104   author = {Wicker, K.}
    19105 }
    19106 @article{PoissonNoise,
    19107   number = {1},
    19108   year = {1965},
    19109   title = {Noise in Photoemission Current},
    19110   pages = {79-80},
    19111   journal = {Applied Optics},
    19112   volume = {4},
    19113   author = {Fried, D.L.}
    19114 }
    19115 @article{Kiel2007,
    19116   year = {2007},
    19117   title = {Direct Monitoring of Formation and Dissociation of Individual Metal Complexes by Single-Molecule Fluorescence Spectroscopy},
    19118   pages = {3363-3366},
    19119   journal = {Angewandte Chemie Interational Edition},
    19120   volume = {46},
    19121   author = {Kiel, A. and Kovacs, J. and Mokhir, A. and {Kr\"amer}, R. and Herten, D.-P.}
    19122 }
    19123 @article{Schwering2011,
    19124   year = {2011},
    19125   title = {Far-Field Nanoscopy with Reversible Chemical Reactions},
    19126   pages = {2940-2945},
    19127   journal = {Angewandte Chemie International Edition},
    19128   volume = {50},
    19129   author = {Schwering, M. and Kiel, A. and Kurz, A. and Lymperopoulos,K. and {Spr\"odefeld}, A. and {Kr\"amer}, R. and Herten, D.-P. }
    19130 }
    19131 @article{Rossow2010,
    19132   number = {11},
    19133   year = {2010},
    19134   title = {Raster image correlation spectroscopy in live cells},
    19135   pages = {1761-1773},
    19136   journal = {Nature Protocols},
    19137   volume = {5},
    19138   author = {Rossow, M.J. and Sasaki, J.M. and Digmann, M.A. and Gratton, E.}
    19139 }
    19140 @inproceedings{Knutsson1987,
    19141   month = {September},
    19142   year = {1987},
    19143   title = {A tensor representation of 3-D structure},
    19144   booktitle = {5th IEEE-ASSP and EURASIP Workshop on Multidimensional Signal Processing},
    19145   address = {Noorwijkerhoudt, Netherlands},
    19146   author = {Knutsson, H.}
    19147 }
    19148 @inproceedings{Serino2011,
    19149   series = {Lecture Notes in Computer Science 6688},
    19150   year = {2011},
    19151   title = {Using the Skeleton for 3D Object Decomposition},
    19152   booktitle = {Image Analysis},
    19153   pages = {447-456},
    19154   editor = {Heyden, A. and Kahl, F.},
    19155   address = {Heidelberg},
    19156   publisher = {Springer},
    19157   author = {Serino, L. and Sanniti di Baja, G. and Arcelli, C.}
    19158 }
    19159 @inproceedings{Schlager2011,
    19160   series = {Lecture Notes in Computer Science 6688},
    19161   year = {2011},
    19162   title = {Coherence Probe Microscopy Imaging and
    19163 Analysis for Fiber-Reinforced Polymers},
    19164   booktitle = {Image Analysis},
    19165   pages = {424-434},
    19166   editor = {Heyden, A. and Kahl, F.},
    19167   address = {Heidelberg},
    19168   publisher = {Springer},
    19169   author = {Schlager1, V. and Schausberger, S.E. and Stifter, D. and Heise1, B.}
    19170 }
    19171 @inproceedings{Malmberg2011,
    19172   series = {Lecture Notes in Computer Science 6688},
    19173   year = {2011},
    19174   title = {Generalized Hard Constraints for Graph
    19175 Segmentation},
    19176   booktitle = {Image Analysis},
    19177   pages = {36-47},
    19178   editor = {Heyden, A. and Kahl, F.},
    19179   address = {Heidelberg},
    19180   publisher = {Springer},
    19181   author = {Malmberg, F. and Strand, R. and {Nystr\"om}, I.}
    19182 }
    19183 @inproceedings{Larsson2011,
    19184   series = {Lecture Notes in Computer Science 6688},
    19185   year = {2011},
    19186   title = {Using Fourier Descriptors and Spatial Models
    19187 for Traffic Sign Recognition},
    19188   booktitle = {Image Analysis},
    19189   pages = {238-249},
    19190   editor = {Heyden, A. and Kahl, F.},
    19191   address = {Heidelberg},
    19192   publisher = {Springer},
    19193   author = {Larsson, F. and Felsberg, M.}
    19194 }
    19195 @inproceedings{Landstrom2011,
    19196   series = {Lecture Notes in Computer Science 6688},
    19197   year = {2011},
    19198   title = {Image Reconstruction by Prioritized
    19199 Incremental Normalized Convolution},
    19200   booktitle = {Image Analysis},
    19201   pages = {176-185},
    19202   editor = {Heyden, A. and Kahl, F.},
    19203   address = {Heidelberg},
    19204   publisher = {Springer},
    19205   author = {{Landstr\"om}, A. and Nellros, F. and Jonsson, H. and Thurley, M.}
    19206 }
    19207 @inproceedings{Knutsson2011,
    19208   series = {Lecture Notes in Computer Science 6688},
    19209   year = {2011},
    19210   title = {Representing Local Structure Using Tensors {II}},
    19211   booktitle = {Image Analysis},
    19212   pages = {545-556},
    19213   editor = {Heyden, A. and Kahl, F.},
    19214   address = {Heidelberg},
    19215   publisher = {Springer},
    19216   author = {Knutsson, H. and Westin, C.-F. and Andersson, M.}
    19217 }
    19218 @inproceedings{Josth2011,
    19219   series = {Lecture Notes in Computer Science 6688},
    19220   year = {2011},
    19221   title = {Real-Time Line Detection Using Accelerated
    19222 High-Resolution Hough Transform},
    19223   booktitle = {Image Analysis},
    19224   pages = {784-793},
    19225   editor = {Heyden, A. and Kahl, F.},
    19226   address = {Heidelberg},
    19227   publisher = {Springer},
    19228   author = {Josth, R. and Dubska, M. and Herout, A. and Havel, J.}
    19229 }
    19230 @inproceedings{Eklund2011,
    19231   series = {Lecture Notes in Computer Science 6688},
    19232   year = {2011},
    19233   title = {Using the Local Phase of the Magnitude of the
    19234 Local Structure Tensor for Image Registration},
    19235   booktitle = {Image Analysis},
    19236   pages = {414-423},
    19237   editor = {Heyden, A. and Kahl, F.},
    19238   address = {Heidelberg},
    19239   publisher = {Springer},
    19240   author = {Eklund, A. and Forsberg, D. and Andersson, M. and Knutsson, H.}
    19241 }
    19242 @inproceedings{Astrom2011,
    19243   series = {Lecture Notes in Computer Science 6688},
    19244   year = {2011},
    19245   title = {Color Persistent Anisotropic Diffusion of Images},
    19246   booktitle = {Image Analysis},
    19247   pages = {262-272},
    19248   editor = {Heyden, A. and Kahl, F.},
    19249   address = {Heidelberg},
    19250   publisher = {Springer},
    19251   author = {{\AAstr\"om}, F. and Felsberg, M. and Lenz, R.}
    19252 }
    19253 @article{Unser2011,
    19254   number = {11},
    19255   year = {2011},
    19256   title = {Multiresolution Monogenic Signal Analysis Using
    19257 the {Riesz-Laplace} Wavelet Transform},
    19258   pages = {2402-2418},
    19259   journal = {IEEE TRANSACTIONS ON IMAGE PROCESSING},
    19260   volume = {18},
    19261   author = {Unser, M. and Sage, D. and Ville, D. van de}
    19262 }
    19263 @article{Frank1976,
    19264   year = {1975},
    19265   title = {Signal to noise ratio of electron micrographs obtained by cross correlation},
    19266   pages = {376-379},
    19267   journal = {Nature},
    19268   volume = {256},
    19269   author = {Frank, J. and Al-Ali, L.}
    19270 }
    19271 @article{Patra2005,
    19272   year = {2005},
    19273   title = {Defocused imaging of quantum-dot angular distribution of radiation},
    19274   pages = {101103},
    19275   journal = {Applied Physics Letters},
    19276   volume = {87},
    19277   author = {Patra, D. and Gergor, I. and Enderlein, J.}
    19278 }
    19279 @article{Toprak2006,
    19280   number = {17},
    19281   year = {2006},
    19282   title = {Defocused orientation and position imaging
    19283 {(DOPI)} of myosin {V}},
    19284   pages = {6495-6499},
    19285   journal = {Proceedings of the National Academy of Sciences USA},
    19286   volume = {103},
    19287   author = {Toprak, E. and Enderlein, J. and Syed, S. and McKinney, S.A. and Petschek, R.G. and Ha, T. and Goldman, Y.E. and Selvin, P.R.}
    19288 }
    19289 @article{Geissbuehler2011,
    19290   number = {3},
    19291   year = {2011},
    19292   title = {Comparison between {SOFI} and {STORM}},
    19293   pages = {408-420},
    19294   journal = {BIOMEDICAL OPTICS EXPRESS},
    19295   volume = {2},
    19296   author = {Geissbuehler, S. and Dellagiacoma, C. and Lasser, T.}
    19297 }
    19298 @article{Enderlein2005,
    19299   year = {2005},
    19300   title = {Performance of Fluorescence Correlation
    19301 Spectroscopy for Measuring Diffusion and
    19302 Concentration},
    19303   pages = {2324-2336},
    19304   journal = {ChemPhysChem},
    19305   volume = {6},
    19306   author = {Enderlein, J. and Gregor, I. and Patra, D. and Dertinger, T. and Kaupp, U.B.}
    19307 }
    19308 @article{Dertinger2007,
    19309   year = {2007},
    19310   title = {Two-Focus Fluorescence Correlation
    19311 Spectroscopy: A New Tool for Accurate and
    19312 Absolute Diffusion Measurements},
    19313   pages = {433-443},
    19314   journal = {ChemPhysChem},
    19315   volume = {8},
    19316   author = {Dertinger, T. and Pacheco, V. and Hocht, I. van der and Hartmann, R. and Gregor, I. and Enderlein, J.}
    19317 }
    19318 @article{Pusey2011,
    19319   year = {2011},
    19320   title = {Brownian Motion Goes Ballistic},
    19321   pages = {802-803},
    19322   journal = {Science},
    19323   volume = {332},
    19324   author = {Pusey, P.N.}
    19325 }
    19326 @article{Maye2010,
    19327   year = {2010},
    19328   title = {Switching binary states of nanoparticle
    19329 superlattices and dimer clusters by {DNA} strands},
    19330   pages = {116},
    19331   journal = {Nature Nanotechnology},
    19332   volume = {5},
    19333   author = {Maye, M.M. and Kumara, M.T. and Nykypanchuk, D. and Sherman, W.B. and Gang, O.}
    19334 }
    19335 @article{Leunissen2011,
    19336   year = {2011},
    19337   title = {Numerical study of {DNA}-functionalized microparticles and nanoparticles: Explicit pair potentials and their implications for phase behavior},
    19338   pages = {084702},
    19339   journal = {Journal of Chemical Physics},
    19340   volume = {134},
    19341   author = {Leunissen, M.E. and Frenkel, D.}
    19342 }
    19343 @article{Chan2001,
    19344   number = {2},
    19345   year = {2001},
    19346   title = {Active Contours Without Edges},
    19347   pages = {266-277},
    19348   journal = {IEEE TRANSACTIONS ON IMAGE PROCESSING},
    19349   volume = {10},
    19350   author = {Chan, T.T. and Vese, L.A.}
    19351 }
    19352 @article{Yen1995,
    19353   number = {3},
    19354   year = {1995},
    19355   title = {A new criterion for automatic multilevel thresholding},
    19356   pages = {370-378},
    19357   journal = {IEEE Transactions on Image Processing},
    19358   volume = {4},
    19359   author = {Yen, J.-C. and Chang, F.-J. and Chang, S.}
    19360 }
    19361 @article{Kapur1985,
    19362   number = {3},
    19363   year = {1985},
    19364   title = {A new method for gray-level picture thresholding using the entropy of the histogram},
    19365   pages = {273-285},
    19366   journal = {Computer Vision, Graphics, and Image Processing},
    19367   volume = {29},
    19368   author = {Kapur, J.N. and Sahdoo, P.K. and Wong, A.K.C.}
    19369 }
    19370 @article{Sezgin2004,
    19371   number = {1},
    19372   year = {2004},
    19373   title = {Survey over image thresholding techniques
    19374 and quantitative performance evaluation},
    19375   pages = {146-165},
    19376   journal = {Journal of Electronic Imaging},
    19377   volume = {13},
    19378   author = {Sezgin, M. and Sankur, B.}
    19379 }
    19380 @article{Kittler1986,
    19381   number = {1},
    19382   year = {1986},
    19383   title = {Minimum error thresholding},
    19384   pages = {41-47},
    19385   journal = {Pattern Recognition},
    19386   volume = {19},
    19387   author = {Kittler, J. and Illingworth, J.}
    19388 }
    19389 @article{Otsu1979,
    19390   year = {1979},
    19391   title = {A threshold selection method from gray-level histograms},
    19392   pages = {62-66},
    19393   journal = {IEEE Transactions on Systems, Man and Cybernetics },
    19394   volume = {9},
    19395   author = {Otsu, N.}
    19396 }
    19397 @article{Zeskind2007,
    19398   number = {7},
    19399   year = {2007},
    19400   title = {Nucleic acid and protein mass mapping by live-cell deep-ultraviolet microscopy},
    19401   pages = {567-569},
    19402   journal = {Nature Methos},
    19403   volume = {4},
    19404   author = {Zeskind, B.J. and Jordan, C.D. and Timp, W. and Trapani, L. and Waller, G. and Horodincu, V. and Ehrlich, D.J. and Matsudaira, P.}
    19405 }
    19406 @article{Dorenbos2008,
    19407   year = {2008},
    19408   title = {Low noise superconducting single photon detectors on silicon},
    19409   pages = {131101},
    19410   journal = {Applied Physics Letters},
    19411   volume = {93},
    19412   author = {Dorenbos, S.N. and Reiger, E.M. and Perinetti, U. and Zwiller, V. and Zijlstra, T. and Klapwijk, T.M.}
    19413 }
    19414 @article{Goltsman2001,
    19415   number = {6},
    19416   year = {2001},
    19417   title = {Picosecond superconduction single-photon optical detector},
    19418   pages = {705-707},
    19419   journal = {Applied Physics Letters},
    19420   volume = {79},
    19421   author = {Gol'tsman, G.N. and Okunev, O. and Chulkova, G. and Lipatov, A. and Semenov, A. and Smirnov, K. and Voronov, B. and Dzardanov, A. and Williams, C. and Sobolewski, R.}
    19422 }
    19423 @article{Shore2011,
    19424   number = {2},
    19425   year = {2011},
    19426   title = {Optimal acquisition scheme for subwavelength localization microscopy of bleachable fluorophores},
    19427   pages = {289-291},
    19428   journal = {Optics Letters},
    19429   volume = {36},
    19430   author = {Shore, E. and Small, A.}
    19431 }
    19432 @article{Stallinga2011,
    19433   year = {2011},
    19434   title = {Optical trapping at low numerical aperture},
    19435   pages = {11027},
    19436   journal = {Journal of the European Optical Society},
    19437   volume = {6},
    19438   author = {Stallinga, S.}
    19439 }
    19440 @article{Ulbrich2007,
    19441   number = {4},
    19442   year = {2007},
    19443   title = {Subunit counting in membrane-bound proteins},
    19444   pages = {319-321},
    19445   journal = {Nature Methods},
    19446   volume = {4},
    19447   author = {Ulbrich, M.H. and Isacoff, E.Y.}
    19448 }
    19449 @article{Ulbrich2007-S3,
    19450   number = {4},
    19451   year = {2007},
    19452   title = {Subunit counting in membrane-bound proteins},
    19453   pages = {319-321},
    19454   note = {Supplementary Methods},
    19455   journal = {Nature Methods},
    19456   volume = {4},
    19457   author = {Ulbrich, M.H. and Isacoff, E.Y.}
    19458 }
    19459 @article{Grunwald2011,
    19460   year = {2011},
    19461   title = {Nuclear export dynamics of {RNA}-protein complexes},
    19462   pages = {333-341},
    19463   journal = {Nature},
    19464   volume = {475},
    19465   author = {{Gr\"unwald}, D. and Singer, R.H. and Rout, M.}
    19466 }
    19467 @inbook{Luengo2011,
    19468   series = {Biological and Medical Physics, Biomedical Engineering Series},
    19469   year = {2011},
    19470   title = {Medical Image Processing: Techniques and Applications},
    19471   note = {ISBN 978-1-4419-9769-2},
    19472   editor = {Dougherty, G.},
    19473   chapter = {Rapid prototyping of image analysis applications},
    19474   publisher = {Springer},
    19475   author = {Luengo Hendriks, C. L. and Malm, P. and  Bengtsson, E.}
    19476 }
    19477 @article{Knowles2011,
    19478   number = {36},
    19479   year = {2011},
    19480   title = {Observation of spatial propagation of amyloid
    19481 assembly from single nuclei},
    19482   pages = {14746-14751},
    19483   journal = {Proceedings of the National Academy of Science USA},
    19484   volume = {108},
    19485   author = {Knowles, T.P.J. and White, D.A. and Abate, A.A. and Agresti, J.J. and Cohen, S.I.A. and Sperling, R.A. and Genst, E.J. de and Dobson, C.M. and Weitz, D.A.}
    19486 }
    19487 @article{Kampmannetal2011,
    19488   number = {6},
    19489   year = {2011},
    19490   title = {Mapping the orientation of nuclear pore proteins in living cells with polarized fluorescence microscopy},
    19491   pages = {643-650},
    19492   journal = {Nature structural & molecular biology},
    19493   volume = {18},
    19494   author = {Kampmann, M. and Atkinson, C.E. and Mattheyses, A.L. and Simon, S.M.}
    19495 }
    19496 @article{Nature08-2011,
    19497   year = {2011},
    19498   title = {Suppression of the coffee-ring effect by
    19499 shape-dependent capillary interactions},
    19500   pages = {308-311},
    19501   journal = {Nature},
    19502   volume = {476},
    19503   author = {Yunker, P.J. and Still, T. and Lohr, M.A. Yodh, A.G.}
    19504 }
    19505 @article{Park2004,
    19506   number = {3},
    19507   year = {2004},
    19508   title = {Nanometre localization of single {ReAsH} molecules},
    19509   pages = {199-205},
    19510   journal = {Journal of Microscopy},
    19511   volume = {216},
    19512   author = {Park, H. and Hanson, T. and Duff, S.R. and Selvin, P.R.}
    19513 }
    19514 @article{Martin2005,
    19515   number = {10},
    19516   year = {2005},
    19517   title = {Mammalian cell-based optimization of the biarsenical binding tetracysteine motif for improved fluorescence and affinity},
    19518   pages = {1308-1314},
    19519   journal = {Nature biotechnology},
    19520   volume = {23},
    19521   author = {Martin, B.R. and Giepmanns, B.N.G. and Adams, S.R. and Tsien, R.Y.}
    19522 }
    19523 @article{Kampmann2009,
    19524   number = {7},
    19525   year = {2009},
    19526   title = {Three-dimensional structure and flexibility of a membrane-coating module of the nuclear pore complex},
    19527   pages = {782-789},
    19528   journal = {Nature structural & molecular biology},
    19529   volume = {16},
    19530   author = {Kampmann, M. and Blobel, G.}
    19531 }
    19532 @phdthesis{Hein2009,
    19533   year = {2009},
    19534   title = {Live Cell {STED} Microscopy
    19535 Using Genetically Encoded Markers},
    19536   address = {{G\"ottingen}, Germany},
    19537   school = {Georg-August-{Universit\"at} {G\"ottingen} },
    19538   author = {Hein, B.}
    19539 }
    19540 @article{Grunwald2010,
    19541   year = {2010},
    19542   title = {In vivo imaging of labelled endogenous b-actin
    19543 {mRNA} during nucleocytoplasmic transport},
    19544   pages = {604-609},
    19545   journal = {Nature},
    19546   volume = {467},
    19547   author = {{Gr\"unwald}, D. and Singer, R.H.}
    19548 }
    19549 @article{Delber2008,
    19550   year = {2008},
    19551   title = {A Fence-like Coat for the Nuclear Pore Membrane},
    19552   pages = {815-826},
    19553   journal = {Molecular Cell},
    19554   volume = {32},
    19555   author = {Delber, E.W. and Ma, Y. and Seo, H.-S. and Hsia, K.-C. and Noriega, T.R. and Blobel, G. and Hoelz, A.}
    19556 }
    19557 @article{Churchman2005,
    19558   number = {5},
    19559   year = {2005},
    19560   title = {Single molecule high-resolution colocalization of {Cy3}
    19561 and {Cy5} attached to macromolecules measures
    19562 intramolecular distances through time},
    19563   pages = {1419-1423},
    19564   journal = {Proceedings of the National Academy of Science},
    19565   volume = {102},
    19566   author = {Churchman, L.S. and {\"Oktem}, Z. and Rock, R.S. and Dawson, J.F. and Spudich, J.A.}
    19567 }
    19568 @article{Brohawn2009,
    19569   year = {2008},
    19570   title = {Structural Evidence for Common Ancestry of the Nuclear Pore Complex and Vesicle Coats},
    19571   pages = {1369-1373},
    19572   journal = {Science},
    19573   volume = {322},
    19574   author = {Brohawn, S.G. and Leksa, N.C. and Spear, E.D. and Rajashankar, K.R. and Schwartz, T.U.}
    19575 }
    19576 @article{Beck2007,
    19577   year = {2007},
    19578   title = {Snapshots of nuclear pore complexes in action
    19579 captured by cryo-electron tomography},
    19580   pages = {611-615},
    19581   journal = {Nature},
    19582   volume = {449},
    19583   author = {Beck, M. and Lucic, V. and {F\"orster}, F. and Baumeister, W. and Medalia, O.}
    19584 }
    19585 @article{Alber2007,
    19586   year = {2007},
    19587   title = {The molecular architecture of the nuclear
    19588 pore complex},
    19589   pages = {695-701},
    19590   journal = {Nature},
    19591   volume = {450},
    19592   author = {Alber, F. and Dokudovskaya, S. and Veenhoff, L.M. and Zhang, W. and Kipper, J. nad Devos, D. and Suprapto, A. and Karni-Schmidt, O. and Williams, R. and Chait, B.T. and Sali, A. and Rout, M.P.}
    19593 }
    19594 @article{Varbioiu2006,
    19595   number = {466-469},
    19596   year = {2006},
    19597   title = {Structural insight into yeast septin organizaiton from polarized fluorescent micrsocopy},
    19598   journal = {Nature},
    19599   volume = {443},
    19600   author = {Varabioiu, A.M. and Mitchison, T.J.}
    19601 }
    19602 @article{Mattheyses2010,
    19603   year = {2010},
    19604   title = {Fluorescence anisotropy reveals order and disorder of protein domains in the nuclear pore complex},
    19605   pages = {1706-1717},
    19606   journal = {Biophysical Journal},
    19607   volume = {99},
    19608   author = {Mattheyes, A.L. and Kampmann, M. and Aktinson, C.E. and Simon, S.M.}
    19609 }
    19610 @article{Voortman2012,
    19611   year = {2012},
    19612   title = {Fast, spatially varying {CTF} correction in {TEM}},
    19613   pages = {26-34},
    19614   journal = {Ultramicroscopy},
    19615   volume = {118},
    19616   author = {Voortman, L.M. and Franken, E.M. and Vliet, L.J. van and Rieger, B.}
    19617 }
    19618 @article{Hell2003a,
    19619   year = {2003},
    19620   title = {Imaging and writing at the nanoscale with focused visible light through saturable optical transitions},
    19621   pages = {859-860},
    19622   journal = {Applied Physics A},
    19623   volume = {77},
    19624   author = {Hell, S.W. and Jakobs, S. and Kastrup, L.}
    19625 }
    19626 @article{Huang2011,
    19627   number = {5},
    19628   year = {2011},
    19629   title = {Simultaneous multiple-emitter fitting for single molecule super-resolution imaging},
    19630   pages = {1377-1393},
    19631   journal = {Biomedical Optics Express },
    19632   volume = {2},
    19633   author = {Huang, F. and  Schwartz, S.L. and  Byars, J.M. and Lidke, K.A. }
    19634 }
    19635 @article{Bader2011,
    19636   year = {2011},
    19637   title = {Homo-FRET Imaging as a Tool to Quantify Protein and
    19638 Lipid Clustering},
    19639   pages = {475-483},
    19640   journal = {ChemPhysChem},
    19641   volume = {12},
    19642   author = {Bader,A.N. and  Hoetzl, S. and Hofman, E.G. and   Voortman, J. and Bergen en Henegouwen, 
    19643 P.M.P. van and  Meer, G. van and Gerritsen, H.C.}
    19644 }
    19645 @article{Bader2009,
    19646   year = {2009},
    19647   title = {Homo-FRET Imaging Enables Quantification of Protein Cluster Sizes
    19648 with Subcellular Resolution},
    19649   pages = {2613-2622},
    19650   journal = {Biophysical Journal},
    19651   volume = {97},
    19652   author = {Bader,A.N. and Hofmann, E.G. and Voortman, J. and Bergen en Henegouwen, P.M.P. van and Gerritsen, H.C.}
    19653 }
    19654 @article{Bader2007,
    19655   number = {11},
    19656   year = {2007},
    19657   title = {Imaging of protein cluster sizes by means of
    19658 confocal time-gated fluorescence anisotropy
    19659 microscopy},
    19660   pages = {6934-6945},
    19661   journal = {Optics Express},
    19662   volume = {15},
    19663   author = {Bader, A.N. and  Hofman,  E.G. and  Bergen en Henegouwen, P.M.P. van and
    19664  Gerritsen,H.C.}
    19665 }
    19666 @article{Dange208,
    19667   number = {1},
    19668   year = {2008},
    19669   title = {Autonomy and robustness of thranslocation through the nuclear pore complex: a single molecule study},
    19670   pages = {77-86},
    19671   journal = {Journal of Cell Biology},
    19672   volume = {183},
    19673   author = {Dange, T. and {Gr\"unwald}, D. and {Gr\"unwald}, A. and Peters, R. and Kubitscheck, U.}
    19674 }
    19675 @article{Kubitscheck2005,
    19676   number = {2},
    19677   year = {2005},
    19678   title = {Nuclear transport of single molecules: dwell times at the nuclear pore complex},
    19679   pages = {233-243},
    19680   journal = {Journal of Cell Biology},
    19681   volume = {168},
    19682   author = {Kubitscheck, U. and {Gr\"unwald}, D. and Hoekstra, A. and Rohleder, D. and Kues, T. and Siebrasse, J.P. and Peters, R.}
    19683 }
    19684 @article{Arhel2006,
    19685   number = {10},
    19686   year = {2006},
    19687   title = {Quantitative four-dimensional tracking of cytoplasmic and nuclear {HIV-1} complexes},
    19688   pages = {817-824},
    19689   journal = {Nature methods},
    19690   volume = {3},
    19691   author = {Arhel, N. and Genovesio, A. and Kim, K.A. and Miko, S. and Perret, E. and Olvio-Marin, J.C. and Shorte, S. and Charneau, P.}
    19692 }
    19693 @article{Rout2000,
    19694   year = {2000},
    19695   title = {The yeast nuclear pore complex: Composition, architecture, and transport mechanism},
    19696   pages = {635-651},
    19697   journal = {Journal of Cell Biology},
    19698   volume = {148},
    19699   author = {Rout,M.P. and Aitchison, J.D. and Suprapto, A. and Hjertaas, K. and Zhao, Y.M. and  Chait, B.T.}
    19700 }
    19701 @article{Alber2007b,
    19702   year = {2007},
    19703   title = {Determining the architectures of
    19704 macromolecular assemblies},
    19705   pages = {683-694},
    19706   journal = {Nature},
    19707   volume = {450},
    19708   author = {Alber, F. and Dokudovskaya2, S. and Veenhoff, L.M. and  Zhang, W. and  Kipper, J. and
    19709 Devos, D. and Suprapto, A. and Karni-Schmidt, O. and  Williams, R. and  Chait, B.T. and
    19710 Rout, M.P. and Sali,A.}
    19711 }
    19712 @article{Brohawn2009b,
    19713   number = {11},
    19714   year = {2009},
    19715   title = {Molecular architecture of the {Nup84-Nup145C-Sec13} edge element in the nuclear pore complex lattice},
    19716   pages = {1173-1178},
    19717   journal = {Nature structural & molecular biology},
    19718   volume = {16},
    19719   author = {Brohawn, S.G. and  Schwartz, T.U.}
    19720 }
    19721 @article{Lewis2007,
    19722   year = {2007},
    19723   title = {A nuclear envelope protein linking nuclear pore basket assembly, {SUMO} protease regulation, and {mRNA} surveillance},
    19724   pages = {813-827},
    19725   journal = {Journal of Cell Biology},
    19726   volume = {178},
    19727   author = {Lewis, A. and Felberbaum, R. and Hochstrasser, M.}
    19728 }
    19729 @article{Jovanovic2008,
    19730   year = {2008},
    19731   title = {Artificial nanopores that mimic the transport selectivity of the nuclear pore complex },
    19732   pages = {1023-1027},
    19733   journal = {Nature},
    19734   volume = {457},
    19735   author = {Jovanovic-Talisman, T. and Tetenbaum-Novatt, J. and McKenney, A.S. and Zilman, A. and Peters, R. and Rout, M.P. and Chait, B.T.}
    19736 }
    19737 @article{Kim2008,
    19738   year = {2008},
    19739   title = {A structure-permeability relationship of ultrathin nanoporous silicon membrane: a comparison with the nuclear envelope},
    19740   pages = {4230-4231},
    19741   journal = {Journal of the American Chemical Society},
    19742   volume = {130},
    19743   author = {Kim, E. and Xiong, H. and Striemer, C.C. and Fang, D.Z. and Fauchet, P.M. and McGrath, J.L. and Amemiya, S.}
    19744 }
    19745 @article{Debler2008,
    19746   year = {2008},
    19747   title = {A fence-like coat for the nuclear pore membrane},
    19748   pages = {815-826},
    19749   journal = {Molecular Cell},
    19750   volume = {32},
    19751   author = {Debler, E.W. and Ma, Y. and Seo, H.S. and Hsia, K.C. and Noriega, T.R. and Blobel, G. and Hoelz, A.}
    19752 }
    19753 @article{Rout2007,
    19754   year = {2007},
    19755   title = {Virtual gating and nuclear transport: the hole picture},
    19756   pages = {622-628},
    19757   journal = {Trends in Cell Biology},
    19758   volume = {13},
    19759   author = {Rout, M.P. and Aitchison, J.D. and Magnasco, M.O. and Chait, B.T.}
    19760 }
    19761 @article{Qu2004,
    19762   number = {31},
    19763   year = {2004},
    19764   title = {Nanometer-localized multiple single-molecule fluorescence microscopy},
    19765   pages = {11298-11303},
    19766   journal = {Proceedings of the National Academy of Science USA},
    19767   volume = {101},
    19768   author = {Qu, X. and Wu, D. and Mets, L. and Scherer, N.F.}
    19769 }
    19770 @article{Hsia2007,
    19771   year = {2007},
    19772   title = {Architecture of a coat for the nuclear pore membrane},
    19773   pages = {1313-1326},
    19774   journal = {Cell},
    19775   volume = {131},
    19776   author = {Hsia, K. C. and Savropoulos, P. and Blobel, G. and Hoelz, A.}
    19777 }
    19778 @article{Daigle2001,
    19779   year = {2001},
    19780   title = {Nuclear pore complexes from immobile networks and have a very low turnover in mammalian cells},
    19781   pages = {71-84},
    19782   journal = {Journal of Cell Biology},
    19783   volume = {154},
    19784   author = {Daigle, N. and Beaudouin, J. and Hartnell, L. and Imreh, G. and Hallberg, E. and Lippincott-Schwartz, J. and Ellenberg, J.}
    19785 }
    19786 @article{Roberti2011,
    19787   year = {2011},
    19788   title = {Confocal fluorescence anisotropy and FRAP imaging of alpha-synuclein amyloid aggregates in living cells},
    19789   pages = {e23338},
    19790   journal = {PLoS ONE},
    19791   volume = {6},
    19792   author = {Roberti, M.J. and  Jovin, T.M. and Jares-Erijman, E.}
    19793 }
    19794 @article{Roberti2007,
    19795   year = {2007},
    19796   title = {Fluorescence imaging of amyloid formation in living cells by a functional, tetracysteine-tagged alpha-synuclein},
    19797   pages = {345-351},
    19798   journal = {Nature Methods},
    19799   volume = {4},
    19800   author = {Roberti, M.J. and Bertoncini, C.W. and  Klement, R. and Jares-Erijman, E.A. and Jovin, T.M.}
    19801 }
    19802 @article{Dudkina2011,
    19803   number = {37},
    19804   year = {2011},
    19805   title = {Interaction of complexes {I, III}, and {IV} within
    19806 the bovine respirasome by single particle
    19807 cryoelectron tomography},
    19808   pages = {15196-15200},
    19809   journal = {Proceedings of the National Academy of Science USA},
    19810   volume = {108},
    19811   author = {Dudkina, N. and Kudryashev, M. and Stahlberg, H. and Boekema, E.J.}
    19812 }
    19813 @article{Rudnaya2011,
    19814   year = {2011},
    19815   title = {Defocus and twofold astigmatism correction in {HAADF-STEM}},
    19816   pages = {1043-1054},
    19817   journal = {Ultramicroscopy},
    19818   volume = {111},
    19819   author = {Rudnaya, M.E. and Broek, W. van den and Doornbos, R.M.P. and Mattheij, R.M.M. and Maubach, J.M.L.}
    19820 }
    19821 @article{Verdoold2011,
    19822   year = {2011},
    19823   title = {Femtomolar {DNA} detection by parallel colorimetric darkfield microscopy of functionalized gold nanoparticles},
    19824   pages = {77-81},
    19825   journal = {Biosensors and Bioelectronics},
    19826   volume = {27},
    19827   author = {Verdoold, R. and Gill, R. and Ungureanu, F. and Molenaar, R. and Kooyman, R.P.H.}
    19828 }
    19829 @article{Putten2011,
    19830   year = {2011},
    19831   title = {Scattering Lens Resolves Sub-100 nm Structures with Visible Light},
    19832   pages = {193905},
    19833   journal = {Physical Review Letters},
    19834   volume = {106},
    19835   author = {Putten, E.G. van and Akbulut, D. and Bertolotti, J. and Vos, W.L. and Lagendijk, A. and Mosk, A.P.}
    19836 }
    19837 @article{Foreman2011,
    19838   year = {2011},
    19839   title = {Fundamental limits in single-molecule orientation measurements},
    19840   pages = {093013},
    19841   journal = {New Journal of Physics},
    19842   volume = {13},
    19843   author = {Foreman, M.R. and {T\"or\"ok}, P.}
    19844 }
    19845 @article{Kendrick1994,
    19846   number = {27},
    19847   year = {1994},
    19848   title = {Phase-diversity wave-front sensor for imaging systems},
    19849   pages = {6533-6546},
    19850   journal = {Applied Optics},
    19851   volume = {33},
    19852   author = {Kendrick, R.L. and Acton, D.S. and Duncan, A.L.}
    19853 }
    19854 @article{Olivier2009,
    19855   number = {20},
    19856   year = {1009},
    19857   title = {Dynamic aberration correction for multiharmonic microscopy},
    19858   pages = {3145-3147},
    19859   journal = {Optics Letters},
    19860   volume = {34},
    19861   author = {Olivier, N. and Debarre, D. and Beaurepaire, E.}
    19862 }
    19863 @article{Coene1991,
    19864   year = {1991},
    19865   title = {Improved methods for the determination of the spherical aberration coefficient in high-resolution electron microscopy from micrographs of an amorphous object},
    19866   pages = {225-233},
    19867   journal = {Ultramicroscopy},
    19868   volume = {38},
    19869   author = {Coene, W.M.J. and Denteneer, T.J.J.}
    19870 }
    19871 @article{Saxton2000,
    19872   year = {2000},
    19873   title = {A new way of measuring microscope aberrations},
    19874   pages = {41-45},
    19875   journal = {Ultramicroscopy},
    19876   volume = {81},
    19877   author = {Saxton, W.O.}
    19878 }
    19879 @article{Steinecker2000,
    19880   year = {2000},
    19881   title = {Measurement of lens aberrations by means of image
    19882 displacements in beam-tilt series},
    19883   pages = {149-161},
    19884   journal = {Ultramicroscopy},
    19885   volume = {81},
    19886   author = {Steinecker, A. and Mader, W.}
    19887 }
    19888 @phdthesis{Brinkers2011,
    19889   month = {October},
    19890   year = {2011},
    19891   title = {All that glitters is gold: },
    19892   address = {Delft, The Netherlands},
    19893   school = {Delft University of Technology},
    19894   author = {Brinkers, S.}
    19895 }
    19896 @article{Thust1992,
    19897   year = {1992},
    19898   title = {Quantitative high-speed matching of high-resolution electron microscopy images},
    19899   pages = {23-45},
    19900   journal = {Ultramicroscopy},
    19901   volume = {45},
    19902   author = {Thust, A. and Urban, K.}
    19903 }
    19904 @article{Holden2011,
    19905   number = {4},
    19906   year = {2011},
    19907   title = {DAOSTORM: an algorithm for high-density
    19908 super-resolution microscopy},
    19909   pages = {279-280},
    19910   journal = {Nature Methods},
    19911   volume = {8},
    19912   author = {Holden, S.J. and Uphoff, S. and Kapanidis, A.N.}
    19913 }
    19914 @article{Tejada2011,
    19915   year = {2011},
    19916   title = {The role of {Poisson's} binomial distribution in the analysis of {TEM} images},
    19917   pages = {1553-1556},
    19918   journal = {Ultramicroscopy},
    19919   volume = {111},
    19920   author = {Tejada, A. and Dekker, A.J. den}
    19921 }
    19922 @article{Nejadasl2011,
    19923   year = {2011},
    19924   title = {Defocus estimationfromstroboscopiccryo-electronmicroscopydata},
    19925   pages = {1592-1598},
    19926   journal = {Ultramicroscopy},
    19927   volume = {111},
    19928   author = {Nejadasl, F. Karimi and Karuppasamy, M. and Koster, A.J. and Ravelli, R.B.G.}
    19929 }
    19930 @article{Barton2011,
    19931   year = {2011},
    19932   title = {In-focus electron microscopy of frozen-hydrated biological samples with a
    19933 Boersch phase plate},
    19934   pages = {1696-1705},
    19935   journal = {Ultramicroscopy},
    19936   volume = {111},
    19937   author = {Barton, B. and Rhinow, D. and Walter, A. and {Schr\"oder}, R. and Benner, G. and Majorovits, E. and Matijevic, M.}
    19938 }
    19939 @article{Adelson1992,
    19940   number = {2},
    19941   year = {1992},
    19942   title = {Single lens stereo with a plenoptic camera},
    19943   pages = {99-106},
    19944   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    19945   volume = {14},
    19946   author = {Adelson, E.H. and Wang, J.Y.A.}
    19947 }
    19948 @article{Deschout2012,
    19949   number = {1},
    19950   year = {2012},
    19951   title = {The influence of movement on the localization precision of sub-resolution particles in fluorescence microscopy},
    19952   pages = {97-109},
    19953   journal = {Journal of Biophotonics},
    19954   volume = {5},
    19955   author = {Deschout, H. and Neyts, K. and Breaeckmans, K.}
    19956 }
    19957 @article{Zhou2011,
    19958   number = {12},
    19959   year = {2011},
    19960   title = {Computational Cameras: Convergence of Optics and Processing},
    19961   pages = {3322-3340},
    19962   journal = {IEEE Transactions on Image Processing},
    19963   volume = {20},
    19964   author = {Zhou, C. and Nayar, S.K.}
    19965 }
    19966 @misc{patentappPAM,
    19967   month = {29 Septemeber},
    19968   year = {2011},
    19969   title = {Optical Modulator device and spatio-temporally light modulated imaging system},
    19970   howpublished = {WO 2011/116904},
    19971   author = {Jovin, T.M. and Caarls, W. and Vries, A. de}
    19972 }
    19973 @article{Piestun2010,
    19974   number = {19},
    19975   month = {October},
    19976   year = {2010},
    19977   title = {Performance limits on three-dimensional particle
    19978 localization in photon-limited microscopy},
    19979   pages = {3306-3308},
    19980   journal = {{Optics letters}},
    19981   volume = {35},
    19982   author = {Grover, G. and Pavani, S.R.P. and Piestun, R.}
    19983 }
    19984 @article{Schonle2008,
    19985   number = {25},
    19986   month = {December},
    19987   year = {2008},
    19988   title = {Isotropic 3D Nanoscopy based on single
    19989 emitter switching},
    19990   pages = {20774-20788},
    19991   journal = {{Optics express}},
    19992   volume = {16},
    19993   author = {Middendorff, C.v. and Egner, C.G. and Hell, S.W. and {Sch\"onle}, A.}
    19994 }
    19995 @article{Moerner2010,
    19996   number = {16},
    19997   month = {October},
    19998   year = {2010},
    19999   title = {Three-dimensional localization precision of the double-helix point spread function versus astigmatism and biplane},
    20000   journal = {Applied Physics Letters},
    20001   volume = {97},
    20002   author = {Badieirostami, M. and Lew, M.D. and Thompson, M.A. and Moerner, W.E.}
    20003 }
    20004 @inproceedings{DeBeule2011,
    20005   year = {2011},
    20006   title = {Generation-3 programmable array microscope {(PAM)} with digital micro-mirror device {(DMD)}},
    20007   booktitle = {SPIE Proceeding Conference 7932 Session 4},
    20008   pages = {7932-15},
    20009   author = {Beule, P.A.A. de and Vried, A.H.B. de and Arndt-Jovin, D.J. and Jovin, T.M.}
    20010 }
    20011 @article{Greenaway2011,
    20012   year = {2011},
    20013   title = {Nanometric depth resolution from multi-focal images in microscopy},
    20014   pages = {942-951},
    20015   journal = {Journal of the royal society},
    20016   volume = {8},
    20017   author = {Dalgarno, H.I.C. and Dalgarno, P.A. and Dada, A.C. and Towers, C.E. and Gibson, G.J. and Parton, R.M. and Davis, I. and Warburton R.J. and Greenaway, A.H.}
    20018 }
    20019 @article{Cherny2010,
    20020   year = {2010},
    20021   title = {Stoichiometry of a regulatory splicing complex
    20022 revealed by single-molecule analyses},
    20023   journal = {The EMBO Journal},
    20024   author = {Cherny, D.I. and Gooding, C. and Eperon, G.E. and Coelho, M.B. and Bagshaw, C.R. and Smith, C.W.J. and Eperon, I.C. }
    20025 }
    20026 @article{Xu2012,
    20027   number = {2},
    20028   year = {2012},
    20029   title = {Dual-objective {STORM} reveals three-dimensional filament organization in the actin cytoskeleton},
    20030   pages = {185-190},
    20031   journal = {Nature Methods},
    20032   volume = {9},
    20033   author = {Xu, K. and Babcock, H.P. and Zhuang, X.}
    20034 }
    20035 @article{Cox2012,
    20036   number = {2},
    20037   year = {2012},
    20038   title = {Bayesian localization microscopy reveals nanoscale
    20039 podosome dynamics},
    20040   pages = {195-200},
    20041   journal = {Nature Methods},
    20042   volume = {9},
    20043   author = {Cox, S. and Rosten, E. and Monypenny, J. and Jovanoivc-Talisman, T. and Burnette, D.T. and Lippincott-Schwartz, J. and Jones, G.E. and Heintzmann, R.}
    20044 }
    20045 @article{Stallinga2012,
    20046   number = {6},
    20047   year = {2012},
    20048   title = {Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model},
    20049   pages = {5896-5921},
    20050   journal = {Optics Express},
    20051   volume = {20},
    20052   author = {Stallinga, S. and Rieger, B.}
    20053 }
    20054 @article{Loeschberger2012,
    20055   number = {3},
    20056   year = {2012},
    20057   title = {Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution},
    20058   pages = {570-575},
    20059   journal = {Journal of Cell Sciences},
    20060   volume = {125},
    20061   author = {{L\"oschberger}, A. and Linde, S. van de and Dabauvalle, M.C. and Rieger, B. and Heilemann, M. and Krohne, G. and Sauer, M.}
    20062 }
    20063 @article{Broek2012,
    20064   year = {2012},
    20065   title = {Fully Automated Measurement of the Modulation Transfer Function of Charge-Coupled Devices above the Nyquist Frequency},
    20066   journal = {Microscopy and Microanalysis},
    20067   author = {Broek, W. van den and Aert, A. van and Dyck, D. van}
    20068 }
    20069 @article{Humphry2012,
    20070   year = {2012},
    20071   title = {Ptychographic electron microscopy using high-angle dark-field scattering for sub-nanometre resolution imaging},
    20072   pages = {730-736},
    20073   note = {DOI: 10.1038/ncomms1733},
    20074   journal = {Nature communications},
    20075   volume = {3},
    20076   author = {Humphry, M.J. and Kraus, B. and Hurst, A.C. and Maiden, A.M. and Rodenburg, J.M.}
    20077 }
    20078 @article{Zhang2012,
    20079   number = {1},
    20080   year = {2012},
    20081   title = {{IPET} and {FETR}: Experimental Approach for Studying Molecular Structure Dynamics by Cryo-Electron Tomography of a Single-Molecule Structure},
    20082   pages = {e30249},
    20083   journal = {PLOS one},
    20084   volume = {7},
    20085   author = {Zhang, L. and ren, G.}
    20086 }
    20087 @mastersthesis{Nieuwenhuizen2011,
    20088   month = {March},
    20089   year = {2011},
    20090   title = {Resolution in localization microscopy},
    20091   address = {Delft, The Netherlands},
    20092   school = {Delft University of Technology},
    20093   author = {R.P.J. Nieuwenhuizen}
    20094 }
    20095 @book{Penczek2010,
    20096   year = {2010},
    20097   title = {Resolution Measures in Molecular Electron Microscopy},
    20098   note = {p 73-100},
    20099   volume = {482},
    20100   publisher = {Academic Press},
    20101   author = {Penczek, P.A.}
    20102 }
    20103 @article{Beckmann1997,
    20104   number = {5346},
    20105   year = {1997},
    20106   title = {Alignment of conduits for the nascent polypeptide chain in the ribosome-sec61 complex},
    20107   pages = {213-2126},
    20108   journal = {Science},
    20109   volume = {278},
    20110   author = {Beckmann, R. and Bubeck, D. and Grassucci, R. and Penczek, P.A. and Verschoor, A. and Blobel, G. and Frank, J.}
    20111 }
    20112 @article{Bottcher1997,
    20113   number = {6620},
    20114   year = {1997},
    20115   title = {Determination of the fold of the core protein of
    20116 hepatitis b virus by electron cryomicroscopy},
    20117   pages = {88-91},
    20118   journal = {Nature},
    20119   volume = {386},
    20120   author = {{B\"ottcher}, B. and Wynne, S.A. and Crowther, R.A.}
    20121 }
    20122 @article{SheppardOptikVol72No4_1986,
    20123   number = {4},
    20124   year = {1986},
    20125   title = {The spatial frequency cut-off in three-dimensional imaging},
    20126   pages = {131--133},
    20127   journal = {Optik},
    20128   volume = {72},
    20129   author = {Sheppard, C.J.R.}
    20130 }
    20131 @article{SheppardOptikVol74No3_1986,
    20132   number = {3},
    20133   year = {1986},
    20134   title = {The spatial frequency cut-off in three-dimensional imaging II},
    20135   pages = {128--129},
    20136   journal = {Optik},
    20137   volume = {74},
    20138   author = {Sheppard, C.J.R.}
    20139 }
    20140 @book{Saxton1978,
    20141   year = {1978},
    20142   title = {Computer Techniques for Image Processing of Electron Microscopy},
    20143   address = {New York},
    20144   publisher = {Academic Press},
    20145   author = {Saxton, W.O.}
    20146 }
    20147 @article{Orlova1997,
    20148   number = {3},
    20149   year = {1997},
    20150   title = {Structure of Keyhole Limpet Hemocyanin Type 1 (KLH1) at 15 A Resolution by Electron Cryomicroscopy and Angular Reconstitution},
    20151   pages = {417-437},
    20152   journal = {Journal of Molecular Biology},
    20153   volume = {271},
    20154   author = {Orlova, E.V. and Dube, P. and Harris, J.R. and Beckman, E. and Zemlin, F. and Markl, J. and  Heel, M. van}
    20155 }
    20156 @article{Corless1996,
    20157   number = {1},
    20158   year = {1996},
    20159   title = {On the Lambert-W function},
    20160   pages = {329-359},
    20161   journal = {Advances in Computational Mathematics},
    20162   volume = {5},
    20163   url = {http://dx.doi.org/10.1007/BF02124750},
    20164   author = {Corless, R. and Gonnet, G. and Hare, D. and Jeffrey, D. and Knuth, D.}
    20165 }
    20166 @article{Barry2000,
    20167   number = {1-2},
    20168   year = {2000},
    20169   title = {Analytical approximations for real values of the {Lambert W-function}},
    20170   pages = {95-103},
    20171   journal = {Mathematics and Computers in Simulation},
    20172   volume = {53},
    20173   url = {http://www.sciencedirect.com/science/article/pii/S0378475400001725},
    20174   author = {Barry,D.A  and  Parlange, J.-Y and  Li, L. and  Prommer, H. and Cunningham, C.J. and Stagnitti, F.}
    20175 }
    20176 @article{Ram2009,
    20177   number = {8},
    20178   year = {2009},
    20179   title = {Improved single particle localization accuracy with dual objective multifocal plane mircoscopy},
    20180   pages = {6881-6898},
    20181   journal = {Optics Express},
    20182   volume = {17},
    20183   author = {Ram, S. and Prabhat, P. and Ward, E.S. and Ober, R.J.}
    20184 }
    20185 @article{Wong2011,
    20186   number = {3},
    20187   year = {2011},
    20188   title = {Limit of the Accuracy of Parameter Estimation for Moving Single Molecules Imaged by Fluorescence Microscopy},
    20189   pages = {895-911},
    20190   journal = {IEEE Transactions on Signal Processing},
    20191   volume = {59},
    20192   author = {Wong, Y. and Lin, Z. and Ober, R.J.}
    20193 }
    20194 @article{Chao2012,
    20195   year = {2012},
    20196   title = {Fisher information matrix for branching processes
    20197 with application to electron-multiplying charge-coupled devices},
    20198   pages = {349-379},
    20199   journal = {Multidimensional System and Signal Processing},
    20200   volume = {23},
    20201   author = {Chao, J. and Ward, E.S. and Ober, R.J.}
    20202 }
    20203 @article{Dempsey2011,
    20204   number = {12},
    20205   year = {2011},
    20206   title = {Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging},
    20207   pages = {1027-1031},
    20208   journal = {Nature Methods},
    20209   volume = {8},
    20210   author = {Dempsey, G.T. and Vaughan, J.C. and Chen, K.H. and Bates, M. and Zhuang, X.}
    20211 }
    20212 @article{Manely2008,
    20213   number = {2},
    20214   year = {2008},
    20215   title = {High-density mapping of single-molecule trajectories with photoactivated localization microscopy},
    20216   pages = {156-158},
    20217   journal = {Nature Methods},
    20218   volume = {5},
    20219   author = {Manely, S. and Gilette, J.M. and Patterson, G.H. and Shroff, H. and Hess, H.F. and Betzig, E. and Lippincott-Schwarz, J.}
    20220 }
    20221 @article{Wicker2010a,
    20222   year = {2010},
    20223   title = {Single-shot optical sectioning using polarization-coded structured illumination},
    20224   pages = {084010},
    20225   journal = {Journal of Optics},
    20226   author = {Wicker, K. and Heintzmann, R.}
    20227 }
    20228 @article{Schoen2011,
    20229   year = {2011},
    20230   title = {Binding-Activated Localization Microscopy of {DNA} Structures},
    20231   journal = {Nano Letters},
    20232   author = {Schoen, I. and Ries, J. and Klotzsch, E. and Ewers, H. and Vogel, V.}
    20233 }
    20234 @article{Vrabioiu2006,
    20235   number = {28},
    20236   year = {2006},
    20237   title = {Structural insights into yeast septin organization
    20238 from polarized fluorescence microscopy},
    20239   pages = {446-449},
    20240   journal = {Nature},
    20241   volume = {443},
    20242   author = {Vrabioiu, A.M. and Mitschison, T.J.}
    20243 }
    20244 @article{Lukosz1962a,
    20245   number = {4},
    20246   year = {1962},
    20247   title = {{\"Ubertragung} nicht-negativer Signale durch lineare Filter},
    20248   pages = {335-364},
    20249   journal = {Journal of Modern Optics},
    20250   volume = {9},
    20251   author = {Lukosz, W.}
    20252 }
    20253 @article{Fitzhugh1983,
    20254   year = {1983},
    20255   title = {Statistical Properties of the Asymmetric Random Telegraph Signal, with Applications to Single-Channel Analysis},
    20256   pages = {75-89},
    20257   journal = {Mathematical Biosciences},
    20258   volume = {64},
    20259   author = {R. Fitzhugh}
    20260 }
    20261 @article{Bobroff1986,
    20262   number = {6},
    20263   year = {1986},
    20264   title = {Position measurement with a resolution and noiselimited instrument},
    20265   pages = {1152-1157},
    20266   journal = {Review of Scientifric Instruments},
    20267   volume = {57},
    20268   author = {N. Bobroff}
    20269 }
    20270 @article{Heintzmann2007,
    20271   year = {2007},
    20272   title = {Estimating missing information by maximum likelihood deconvolution},
    20273   pages = {136-144},
    20274   journal = {Micron},
    20275   volume = {38},
    20276   author = {Heintzmann, R.}
    20277 }
    20278 @article{Annibale2011,
    20279   number = {7},
    20280   year = {2011},
    20281   title = {Identification of clustering artifacts in
    20282 photoactivated localization microscopy},
    20283   pages = {527-528},
    20284   journal = {Nature Methods},
    20285   volume = {8},
    20286   author = {Annibale, P. and Vanni, S. and Scarelli, M. and Rothlisberger, U. and Radenovic, A.}
    20287 }
    20288 @article{Ta2010,
    20289   number = {1},
    20290   year = {2010},
    20291   title = {An Extended Scheme for Counting Fluorescent Molecules by Photon- Antibunching},
    20292   pages = {119-124},
    20293   journal = {Laser Physics},
    20294   volume = {20},
    20295   author = {Ta, H. and Wolfrum, J. and Herten, D.-P.}
    20296 }
    20297 @article{Tian2012,
    20298   number = {8},
    20299   year = {2012},
    20300   title = {Experimental compressive phase space tomography},
    20301   pages = {8296-8308},
    20302   journal = {Optics Express},
    20303   volume = {20},
    20304   author = {Tian, L. and Lee, J. and Oh, S.B. and Barbastathis, G.}
    20305 }
    20306 @article{Waller2011,
    20307   number = {3},
    20308   year = {2011},
    20309   title = {Phase and amplitude imaging from noisy images by Kalman filtering},
    20310   pages = {2805-2815},
    20311   journal = {Optics Express},
    20312   volume = {19},
    20313   author = {Waller, L. and Tsang, M. and Ponda, S. and Young Yang, S. and Barbastathis, G.}
    20314 }
    20315 @inproceedings{Kurz2012,
    20316   series = {SPIE},
    20317   year = {2012},
    20318   title = {Quantification of fluorescent samples by photon-antibunching},
    20319   booktitle = {Single Molecule Spectroscopy and Superresolution Imaging V},
    20320   pages = {82280K-1},
    20321   editor = {Enderlein, J. and Karol, Z. and Erdmann, R. and Koberling, F. and Gregor, I.},
    20322   author = {Kurz, A. and Schwering, M. and Herten, D.-P.}
    20323 }
    20324 @article{Harms1999,
    20325   year = {1999},
    20326   title = {Single-Molecule Anisotropy Imaging},
    20327   pages = {2864-2870},
    20328   journal = {Bipphysical Journal},
    20329   volume = {77},
    20330   author = {Harms, G.S. and Sonnleitner, M. and {Sch\"utz}, G.J. and Gruber, H.J. and Schmidt, T.}
    20331 }
    20332 @article{Uji2006,
    20333   year = {2006},
    20334   title = {Visualizing spatial and temporal heterogeneity of single molecule rotational diffusion in a  glassy polymer by defocused wide-field imaging},
    20335   pages = {2511-2518},
    20336   journal = {Polymer},
    20337   volume = {47},
    20338   author = {Uij-i, H. and Melnikov, S.M. and Deres, A. Bergamini, G. and Schryver, F. de and Herrmann, A. and {M\"ullen}, K. and Enderlein, J. and Hofkens, J.}
    20339 }
    20340 @article{Ruiter1997,
    20341   year = {1997},
    20342   title = {Single Molecule Rotational and Translational Diffusion Observed by Near-Field Scanning Optical Microscopy},
    20343   pages = {7318-7323},
    20344   journal = {Journal of Physical Chemistry},
    20345   volume = {101},
    20346   author = {Ruiter, A.G.T. and Veerman, J.A. and Garcia-Parajo, M.F. and Hulst, N.F. van}
    20347 }
    20348 @article{Pieper2011,
    20349   year = {2011},
    20350   title = {Fluorescence correlation spectroscopy as a tool  for measuring the rotational diffusion of macromolecules},
    20351   pages = {1-11},
    20352   journal = {Chemical Physics Letters},
    20353   volume = {516},
    20354   author = {Pieper, C.M. and Enderlein, J.}
    20355 }
    20356 @article{Loman2011,
    20357   year = {2010},
    20358   title = {Measuring rotational diffusion of macromolecules by fluorescence correlation spectroscopy},
    20359   pages = {627-636},
    20360   journal = {Photochem. Photobiol. Sci.},
    20361   volume = {9},
    20362   author = {Loman, A. and Gergor, I. and Stutz, C. and Mund, M. and Enderlein, J.}
    20363 }
    20364 @article{Adhikarietal2011,
    20365   year = {2011},
    20366   title = {Temperature dependent single molecule rotational dynamics in {PMA}},
    20367   pages = {1849-1856},
    20368   journal = {Phys. Chem. Chem. Phys.},
    20369   volume = {13},
    20370   author = {Adhikari, S. and Selmke, M. and Cichos, F.}
    20371 }
    20372 @article{Malkusch2012,
    20373   year = {2012},
    20374   title = {Coordinate-based colocalization analysis of single-molecule localization microscopy data},
    20375   pages = {1-10},
    20376   journal = {Histochem Cell Biol},
    20377   volume = {137},
    20378   author = {Malkusch, S. and Endesfelder, U. and Mondry, J. and Helleri, M. and Verveer, P.J. and Heilemann, M.}
    20379 }
    20380 @article{Kazantsev2010,
    20381   year = {2010},
    20382   title = {Fully three-dimensional defocus-gradient corrected backprojection in cryoelectron microscopy},
    20383   pages = {1128-1142},
    20384   journal = {Ultramicroscopy},
    20385   volume = {110},
    20386   author = {Kazantsev, I. and Klukowska, J. and Herman, G.T. and Cernetic, L.}
    20387 }
    20388 @article{Mariani2011,
    20389   year = {2011},
    20390   title = {Simulation and correction of electron images of tilted planar weak-phase samples},
    20391   pages = {259-268},
    20392   journal = {Journal of Structural Biology},
    20393   volume = {174},
    20394   author = {Mariani, V. and Schenk, A.D. and Philippsen, A. and Engel, A.}
    20395 }
    20396 @inproceedings{Studer2012,
    20397   series = {Proceedings of the SPIE},
    20398   year = {2012},
    20399   title = {Hyperspectral fluorescence microscopy based on compressed sensing },
    20400   booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIX},
    20401   note = {doi: 10.1117/12.908532},
    20402   editor = {Conchello, J.-A. and Cogswell, C.J. and  Wilson, T. and  Brown, T.G.},
    20403   author = {Studer, V. and Bobin, J. and Chahid, M. and Moussavi, H. and Candes, E. and Dahan, M.}
    20404 }
    20405 @article{Gabor1946b,
    20406   year = {1946},
    20407   title = {Theory of Communication: Part II: The analysis of hearing},
    20408   pages = {442-445},
    20409   journal = {Journal of the Institution of Electrical Engineers},
    20410   volume = {93},
    20411   author = {Gabor, D.}
    20412 }
    20413 @article{Gabor1946c,
    20414   year = {1946},
    20415   title = {Theory of Communication: Part III: Frequency Compression and Expansion},
    20416   pages = {445-457},
    20417   journal = {Journal of the Institution of Electrical Engineers},
    20418   volume = {93},
    20419   author = {Gabor, D.}
    20420 }
    20421 @article{Chruchmann2012,
    20422   year = {2012},
    20423   title = {Colocalization of fluorescent probes: accurate and precise registration with  nanometer resolution},
    20424   pages = {141-150},
    20425   note = {doi:10.1101/pdb.top067918},
    20426   journal = {Cold Spring Harbor Protocolls},
    20427   author = {Churchmann, L.S. and Spudich, J.A.}
    20428 }
    20429 @article{Dedecker2009,
    20430   year = {2012},
    20431   title = {Defocused Wide-field Imaging Unravels Structural and Temporal Heterogeneity in Complex Systems},
    20432   pages = {1079-1090},
    20433   journal = {Advanced Materials},
    20434   volume = {21},
    20435   author = {Dedecker, P. and Muls, B. and Deres, A. and Uji-i, H. and Hotta, J. and Sliwa, M. and Soumillion, J.-P. and {M\"ullen}, K. and Enderlein, J. and Hofkens, J.}
    20436 }
    20437 @article{Ha1998,
    20438   number = {10},
    20439   year = {1998},
    20440   title = {Hindered Rotational Diffusion and Rotational Jumps of Single Molecules},
    20441   pages = {2093-2096},
    20442   journal = {Physical Review Letters},
    20443   volume = {80},
    20444   author = {Ha, T. and Glass, J. and Enderle, T. and Chemla, D.S. and Weiss, S.}
    20445 }
    20446 @article{Bartko2002,
    20447   number = {2},
    20448   year = {2002},
    20449   title = {Three-Dimensional Single Molecule Rotational Diffusion in Glassy State Polymer Films},
    20450   pages = {026101},
    20451   journal = {Physical Review Letters},
    20452   volume = {89},
    20453   author = {Bartko, A.P. and Xu, K. and Dickson, R.M.}
    20454 }
    20455 @article{Gould2008,
    20456   number = {12},
    20457   year = {2008},
    20458   title = {Nanoscale imaging of molecular positions and anisotropies},
    20459   pages = {1027-1031},
    20460   journal = {Nature Methods},
    20461   volume = {5},
    20462   author = {Gould, T.J. and Gunewardene, M.S. and Gudheti, M.V. and Verkhusha, V.V. and Yin, S.-R. and Gosse, J.A. and Hess, S.T.}
    20463 }
    20464 @article{Hernando2006,
    20465   year = {2006},
    20466   title = {Effect of Disorder on Ultrafast Exciton Dynamics Probed by Single Molecule Spectroscopy},
    20467   pages = {216403},
    20468   journal = {Physical Review Letters},
    20469   volume = {97},
    20470   author = {Hernando, J. and Dijk, E.M.H.P. van and Hoogenboom, J.P. and Garcia-Lopez, J.-J. and Reinhoudt, D.N. and Crego-Calama, M. and Garcia-Parajo, M.F. and Hulst, N.F. van}
    20471 }
    20472 @article{Simmonds2011,
    20473   number = {24},
    20474   year = {2011},
    20475   title = {Three dimensional laser microfabrication in diamond using a dual adaptive optics system},
    20476   pages = {24122-24128},
    20477   journal = {Optics Express},
    20478   volume = {19},
    20479   author = {Simmonds, R.D. and Salter, P.S. and Jesacher, A. and Booth, M.J.}
    20480 }
    20481 @article{Cumming2011,
    20482   number = {10},
    20483   year = {2011},
    20484   title = {Adaptive aberration compensation for three-dimensional micro-fabrication of photonic crystals in lithium niobate},
    20485   pages = {9419-9426},
    20486   journal = {Optics Express},
    20487   volume = {19},
    20488   author = {Cumming, B.P. and Jesacher, A. and Booth, M.J. and Wilson, T. and Gu, M.}
    20489 }
    20490 @article{Marshall2011,
    20491   number = {5},
    20492   year = {2011},
    20493   title = {Three-dimensional imaging of direct-written photonic structures},
    20494   pages = {695-697},
    20495   journal = {Optics Letters},
    20496   volume = {36},
    20497   author = {Marshall, G.D. and Jesacher, A. and Thayil, A. and Withford, M.J. and Booth, M.}
    20498 }
    20499 @article{Chizhik2011,
    20500   year = {2011},
    20501   title = {Probing the Radiative Transition of Single m olecules with a Tunable Microresonator},
    20502   pages = {1700-1703},
    20503   journal = {Nano Letters},
    20504   volume = {11},
    20505   author = {Chizihik, A.I. and Chizhik, A.M. and Khoptyar, D. and {B\"ar}, S. and Meixner, A.J. and Enderlein, J.}
    20506 }
    20507 @article{Kalaidzidis2007,
    20508   year = {2007},
    20509   title = {Intracelluar objects tracking},
    20510   pages = {569-578},
    20511   journal = {European Journal of Cell Biology},
    20512   volume = {86},
    20513   author = {Kalaidzidis, Y.}
    20514 }
    20515 @article{Kalaidzidis2009,
    20516   year = {2009},
    20517   title = {Multiple objects tracking in fluorescence microscopy},
    20518   pages = {57-80},
    20519   journal = {Journal of Mathematical Biology},
    20520   volume = {58},
    20521   author = {Kalaidzidis, Y.}
    20522 }
    20523 @article{Rink2005,
    20524   year = {2005},
    20525   title = {Rab Conversion as a Mechanism of Progression
    20526 from Early to Late Endosomes},
    20527   pages = {735-749},
    20528   journal = {Cell},
    20529   volume = {122},
    20530   author = {Rink, J. and Ghigo, E. and Kalaidzidis, Y. and Zerial, M.}
    20531 }
    20532 @inproceedings{Bryne2012,
    20533   month = {May 2-5},
    20534   year = {2012},
    20535   title = {MODELS FOR BIOMEDICAL IMAGE RECONSTRUCTION
    20536 BASED ON INTEGRAL APPROXIMATION METHODS},
    20537   booktitle = {IEEE International Symposium on Biomedical Imaging},
    20538   pages = {70-73},
    20539   address = {Barcelona, Spain},
    20540   author = {Bryne, C. and Gordon, D. and Heilper, D.},
    20541   organization = {IEEE}
    20542 }
    20543 @inproceedings{Becker2012,
    20544   month = {May 2-5},
    20545   year = {2012},
    20546   title = {FROM TIMELAPSE-DATA TO GENEALOGIC TREES: USING DIFFERENT CONTRAST
    20547 MECHANISMS TO IMPROVE CELL TRACKING},
    20548   booktitle = {IEEE International Symposium on Biomedical Imaging},
    20549   pages = {386-389},
    20550   address = {Barcelona, Spain},
    20551   author = {Becker, T. and Rapoport, D.H. and Mamlouk, A.M.},
    20552   organization = {IEEE}
    20553 }
    20554 @inproceedings{Wang2012,
    20555   month = {May 2-5},
    20556   year = {2012},
    20557   title = {A HYBRID TOTAL-VARIATION MINIMIZATION APPROACH TO COMPRESSED SENSING},
    20558   booktitle = {IEEE International Symposium on Biomedical Imaging},
    20559   pages = {74-77},
    20560   address = {Barcelona, Spain},
    20561   author = {Wang, Y. and Liang, D. and Chang, Y. and Ying, L.},
    20562   organization = {IEEE}
    20563 }
    20564 @inproceedings{Cohen2012,
    20565   month = {May 2-5},
    20566   year = {2012},
    20567   title = {IMAGE REGISTRATION ERROR ANALYSIS WITH APPLICATIONS IN SINGLE MOLECULE MICROSCOPY},
    20568   booktitle = {IEEE International Symposium on Biomedical Imaging},
    20569   pages = {966-969},
    20570   address = {Barcelona, Spain},
    20571   author = {Cohen, E.A.K. and Ober, R.J.},
    20572   organization = {IEEE}
    20573 }
    20574 @inproceedings{Hu2012,
    20575   month = {May 2-5},
    20576   year = {2012},
    20577   title = {MITOSIS DETECTION OF HEMATOPOIETIC STEM CELL POPULATIONS IN TIME-LAPSE PHASE-CONTRAST MICROSCOPY IMAGES},
    20578   booktitle = {IEEE International Symposium on Biomedical Imaging},
    20579   pages = {390-393},
    20580   address = {Barcelona, Spain},
    20581   publisher = {IEEE},
    20582   author = {Huh, S. and Eom, S. and Elmer Ker, D.F. and Weiss, L. and Kanade, T.}
    20583 }
    20584 @inproceedings{Stallinga2012a,
    20585   month = {May 2-5},
    20586   year = {2012},
    20587   title = {THE EFFECT OF BACKGROUND ON LOCALIZATION UNCERTAINTY IN SINGLE EMITTER IMAGING},
    20588   booktitle = {IEEE International Symposium on Biomedical Imaging},
    20589   pages = {988-991},
    20590   address = {Barcelona, Spain},
    20591   publisher = {IEEE},
    20592   author = {Stallinga, S. and Rieger, B.}
    20593 }
    20594 @inproceedings{Wong2012,
    20595   month = {May 2-5},
    20596   year = {2012},
    20597   title = {Effect of Time Discretization on the Limit of the
    20598 Accuracy of Parameter Estimation for Moving
    20599 Single Molecules Imaged by Fluorescence
    20600 Microscopy},
    20601   booktitle = {IEEE International Symposium on Biomedical Imaging },
    20602   pages = {1228-1231},
    20603   address = {Barcelona, Spain},
    20604   author = {Wong, Y. and Lin, Z. and Ober, R.J.}
    20605 }
    20606 @inproceedings{Ducroz2012,
    20607   month = {May 2-5},
    20608   year = {2012},
    20609   title = {CHARACTERIZATION OF CELL SHAPE AND DEFORMATION IN 3D USING SPHERICAL HARMONICS},
    20610   booktitle = {IEEE International Symposium on Biomedical Imaging },
    20611   address = {Barcelona, Spain},
    20612   author = {Ducroz, C. and Olivio-Marin, J.-C. and Dufor, A.},
    20613   organization = {IEEE}
    20614 }
    20615 @techreport{hassanich2012,
    20616   month = {Jan},
    20617   year = {2012},
    20618   title = {Nearly Optimal Sparse Fourier Transform},
    20619   address = {arXiv:1201.2501v1 [cs.DS] },
    20620   institution = {Massachusetts Institute of Technology, USA},
    20621   author = {Hassanieh, H. and Indyk, P. and Katabi, D. and Price, E.}
    20622 }
    20623 @inproceedings{Levet2012,
    20624   month = {May 2-5},
    20625   year = {2012},
    20626   title = {AUTOMATIC NON-PARAMETRIC CAPSID SEGMENTATION USING WAVELETS TRANSFORM AND GRAPH},
    20627   booktitle = {IEEE International Symposium on Biomedical Imaging},
    20628   address = {Barcelona, Spain},
    20629   author = {Levert, F. and Cassany, A. and Kann, M. and Sibarita, J.-B.},
    20630   organization = {IEEE}
    20631 }
    20632 @inproceedings{Jezierska2012,
    20633   month = {May 2-5},
    20634   year = {2012},
    20635   title = {POISSON-GAUSSIAN NOISE PARAMETER ESTIMATION IN FLUORESCENCE MICROSCOPY IMAGING},
    20636   booktitle = {IEEE International Symposium on Biomedical Imaging},
    20637   pages = {1663-1666},
    20638   address = {Barcelona, Spain},
    20639   author = {Jezierska, A. and Talbot, H. and Chaux, C. and Pesquet, J.-C. and Engler, G.},
    20640   organization = {IEEE}
    20641 }
    20642 @article{Vulovic2012,
    20643   year = {2012},
    20644   title = {Precise and unbiased estimation of astigmatism and defocus in transmission electron microscopy},
    20645   pages = {115-134},
    20646   journal = {Ultramicroscopy},
    20647   volume = {116},
    20648   author = {Vulovic, M. and Franken, E. and Ravelli, R.B.G. and Vliet, L.J. van and Rieger, B.}
    20649 }
    20650 @article{Mukamel2012,
    20651   year = {2012},
    20652   title = {Statistical Deconvolution for Superresolution Fluorescence Microscopy},
    20653   pages = {2391-2400},
    20654   journal = {Biophysical Journal},
    20655   volume = {102},
    20656   author = {Mukamel, E.A. and Babcock, H. and Zhuang, X.}
    20657 }
    20658 @article{Fernandez2012,
    20659   number = {10},
    20660   year = {2012},
    20661   title = {Computational Methods for Electron Tomography},
    20662   pages = {1010-1030},
    20663   journal = {Micron},
    20664   volume = {43},
    20665   author = {Fernandez, J.-J.}
    20666 }
    20667 @article{Kopek2012,
    20668   number = {16},
    20669   year = {2012},
    20670   title = {Correlative 3D superresolution fluorescence and
    20671 electron microscopy reveal the relationship of
    20672 mitochondrial nucleoids to membranes},
    20673   pages = {6136-6141},
    20674   journal = {Proceedings of the National Academy of Science USA},
    20675   volume = {109},
    20676   author = {Kopek, B.G. and Shtengel, G. and Shan Xu, C. and Clayton, D.A. and Hess, H.F.}
    20677 }
    20678 @article{Shtengel2009,
    20679   number = {9},
    20680   year = {2009},
    20681   title = {Interferometric fluorescent super-resolution
    20682 microscopy resolves 3D cellular ultrastructure},
    20683   pages = {3125-3130},
    20684   journal = {Proceeding of the National Academy of Science USA},
    20685   volume = {106},
    20686   author = {Shtengel, G.and Galbraith, J.A. and Galbraith, C.G. and Lippincott-Schwartz, J. and Gillette, J.M. and Manely, S. and Sougrat, R. and Waterman, C.M. and Knachanawong, P. and Davidson, M.W. and Fetter, R.D. and Hess, H.F.}
    20687 }
    20688 @misc{materialsmethods,
    20689   title = {Materials and methods are available as supplementary material on {Science Online}.}
    20690 }
    20691 @article{Pavani2008,
    20692   number = {26},
    20693   year = {2008},
    20694   title = {Three dimensional tracking of fluorescent microparticles using a photon-limited double-helix response system},
    20695   pages = {22048-22057},
    20696   journal = {Optics Express},
    20697   volume = {16},
    20698   author = {Pavani, S.R.P. and Piestun, R.}
    20699 }
    20700 @article{Mlodzianoski2011,
    20701   number = {16},
    20702   year = {2011},
    20703   title = {Sample drift correction in 3D fluorescence photoactivation localization microscopy},
    20704   pages = {15009-15019},
    20705   journal = {Optics Express},
    20706   volume = {19},
    20707   author = {Mlodzianoski, M.J. and Schreiner, J.M. and Callahan, S.P. and Smolkova, K. and Dlaskova, A. and Santorova, J. and Jezek, P. and Bewersdorf, J.}
    20708 }
    20709 @article{Heilemann2005,
    20710   number = {11},
    20711   year = {2005},
    20712   title = {Carbocyanine dyes as efficient reversible single-molecule optical switch},
    20713   pages = {3801-3806},
    20714   journal = {Journal of the American Chemical Society},
    20715   volume = {127},
    20716   author = {Heilemann, M. and Margeat, E. and Kasper, R. and Sauer, M. and Tinnefeld, P. }
    20717 }
    20718 @inbook{Frank1980,
    20719   year = {1980},
    20720   title = {Computer Processing of Electron Microscope Images},
    20721   pages = {197-233},
    20722   editor = {Hawkes, P.W.},
    20723   chapter = {The Role of Correlation Techniques in Computer Image Processing},
    20724   publisher = {Springer Verlag},
    20725   author = {Frank, J.}
    20726 }
    20727 @article{Bolte2006,
    20728   number = {3},
    20729   year = {2006},
    20730   title = {A guided tour into subcellular colocalization analysis in light microscopy},
    20731   pages = {213-232},
    20732   journal = {Journal of Microscopy},
    20733   volume = {224},
    20734   author = {Bolte, S. and Cordelieres, F.P.}
    20735 }
    20736 @article{Adler2008,
    20737   number = {1},
    20738   year = {2008},
    20739   title = {Replicate-based noise corrected correlation for accurate measurements of colocalization},
    20740   pages = {121-133},
    20741   journal = {Journal of Microscopy},
    20742   volume = {230},
    20743   author = {Adler, J. and Pagakis, S.N. and Parmryd, I.}
    20744 }
    20745 @article{Ries2012,
    20746   number = {6},
    20747   year = {2012},
    20748   title = {A simple, versatile method for {GFP-based} super-resolution microscopy via nanobodies},
    20749   pages = {582-587},
    20750   journal = {Nature Methods},
    20751   volume = {9},
    20752   author = {Ries, J. and Kaplan, C. and Platonova, E. and Eghlidi, H. and Ewers, H.}
    20753 }
    20754 @article{Neumuller2010,
    20755   number = {11},
    20756   year = {2010},
    20757   title = {Photounbinding of Calmodulin from a Family of {CaM} Binding Peptides},
    20758   pages = {14050},
    20759   journal = {PlOS one},
    20760   volume = {5},
    20761   author = {{Neum\"uller}, K.G. and Elsayad, K. and Reisecker, J.M. and Waxham, M.N. and Heinze, K.G.}
    20762 }
    20763 @article{Mourik2012,
    20764   year = {2012},
    20765   title = {Signatures of Majorana Fermions in
    20766 Hybrid Superconductor-Semiconductor
    20767 Nanowire Devices},
    20768   pages = {1003-1008},
    20769   journal = {Science},
    20770   volume = {336},
    20771   author = {Mourik, V. and Zuo, K. and Frolov, S.M. and Plissard, S.R. and Bakkers, E.P.A.M. and Kouwenhouven, L.P.}
    20772 }
    20773 @article{Loenhout2012,
    20774   number = {10},
    20775   year = {2012},
    20776   title = {Non-Bias-Limited Tracking of Spherical Particles, Enabling Nanometer Resolution at Low Magnification},
    20777   pages = {2362-2371},
    20778   journal = {Biophysical Journal},
    20779   volume = {102},
    20780   author = {Loenhout, M.T.J. van and Kerssemakers, J.W.J. and Vlaminck, I. De and Dekker, C.}
    20781 }
    20782 @article{Hofmann2005,
    20783   number = {49},
    20784   year = {2005},
    20785   title = {Breaking the diffraction barrier in fluorescence microscopy at low light intensities by using reversibly photoswitchable proteins},
    20786   pages = {17565-17569},
    20787   journal = {Proceedings of the National Academy of Sciences USA},
    20788   volume = {102},
    20789   author = {Hofmann, M. and Eggeling, C. and Jakobs, S. and Hell, S.W.}
    20790 }
    20791 @article{Clifford2007,
    20792   number = {6987-69991},
    20793   year = {2007},
    20794   title = {Fluorescence of Single Molecules in Polymer Films: Sensitivity of Blinking to Local Environment},
    20795   journal = {The Journal of Physical Chemistry B Letters},
    20796   volume = {111},
    20797   author = {Clifford, J.N. and Bell, T.D.M. and Tinnefeld, P. and Heilemann, M. and Melnikov, S.M. and Hotta, J.-I. and Sliwa, M. and Dedecker, P. and Sauer, M. and Hofkens, J. and Yeow, E.K.L.}
    20798 }
    20799 @article{Isack2012,
    20800   year = {2012},
    20801   title = {Energy-Based Geometric Multi-model Fitting},
    20802   pages = {123-147},
    20803   journal = {International Journal of Computer Vision},
    20804   volume = {97},
    20805   author = {Isack, H. and Boybov, Y.}
    20806 }
    20807 @article{Rullgrad2011,
    20808   number = {3},
    20809   year = {2011},
    20810   title = {Simulation of transmission electron microscope images of biological specimens},
    20811   pages = {234-256},
    20812   journal = {Journal of Microscopy},
    20813   volume = {243},
    20814   author = {{Rullgr\aad}, H. and {\"Ofverstedt}, L.-G. and Masich, S. and Daneholt, B. and {\"Oktem}, O.}
    20815 }
    20816 @article{York2012,
    20817   number = {7},
    20818   year = {2012},
    20819   title = {Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy},
    20820   pages = {749-754},
    20821   journal = {Nature Methods},
    20822   volume = {9},
    20823   author = {York, A.G. and Parekh, S.H. and Nogare, D.D. and Fischer, R.S. and Temprine, K. and Mione, M. and Chitnis, A.B. and Combs, C.A. and Shroff, H.}
    20824 }
    20825 @article{Cleveland1979,
    20826   number = {368},
    20827   month = {Dec.},
    20828   year = {1979},
    20829   title = {Robust Locally Weighted Regression and Smoothing Scatterplots},
    20830   pages = {829-836},
    20831   journal = {Journal of the American Statistical Association},
    20832   volume = {74},
    20833   author = {Cleveland, W.S.}
    20834 }
    20835 @book{Erni2010a,
    20836   year = {2010},
    20837   title = {Aberration-Corrected Imaging in Transmission Electron Microscopy},
    20838   address = {London, UK},
    20839   publisher = {Imperial College Press},
    20840   author = {Erni, R.}
    20841 }
    20842 @article{Saghi2012,
    20843   year = {2012},
    20844   title = {Electron Tomography in the {(S)TEM}: From Nanoscale
    20845 Morphological Analysis to {3D} Atomic Imaging},
    20846   pages = {59-79},
    20847   journal = {Annu. Rev. Mater. Res.},
    20848   volume = {42},
    20849   author = {Saghi,  A. and Midgley, P.A.}
    20850 }
    20851 @article{Midgley2009,
    20852   year = {2009},
    20853   title = {Electron tomography and holography in materials science},
    20854   pages = {271-280},
    20855   journal = {Nature Materials},
    20856   volume = {8},
    20857   author = {Midgley, P.A. and Dunin-Borkowski, R.E.}
    20858 }
    20859 @article{Midgley2003,
    20860   year = {2003},
    20861   title = {{3D} electron microscopy in the physical sciences: the development of {Z-contrast} and {EFTEM} tomography},
    20862   pages = {413-431},
    20863   journal = {Ultramicroscopy},
    20864   volume = {96},
    20865   author = {Midgley, P.A. and Weyland, M.}
    20866 }
    20867 @article{Spontak1988,
    20868   year = {1988},
    20869   title = {Three-dimensional study of cylindrical morphology in a styrene-butadiene-styrene block copolymer},
    20870   pages = {387-395},
    20871   journal = {Polymer},
    20872   volume = {29},
    20873   author = {Spontak, R.J. and Williams, M.C. and Agard, D.A.}
    20874 }
    20875 @article{Friedrich2005,
    20876   year = {2005},
    20877   title = {Comparison of intensity distributions in tomograms from {BF TEM, ADF TEM, HAADF STEM}, and calculated tilt series},
    20878   pages = {18-27},
    20879   journal = {Ultramicroscopy},
    20880   volume = {106},
    20881   author = {Friedrich, H. and McCartney, M.R. and Buseck, P.R.}
    20882 }
    20883 @article{Kubel2005,
    20884   number = {5},
    20885   year = {2005},
    20886   title = {Recent Advances in Electron Tomography: {TEM} and {HAADF-STEM} Tomography for Materials Science and Semiconductor Applications},
    20887   pages = {378-400},
    20888   journal = {Microscopy and Microanalysis},
    20889   volume = {11},
    20890   author = {{K\"ubel}, C. and Voigt, A. and Schoenmakers, R. and Otten, M. and Su, D. and Lee, T.-C. and Carlsson, A. and Bradley, J.}
    20891 }
    20892 @article{Rose1975,
    20893   year = {1975},
    20894   title = {Zur Theorie der Bildentstehung im Elektronenmikroskop},
    20895   pages = {217-244},
    20896   journal = {Optik},
    20897   volume = {42},
    20898   author = {Rose, H.}
    20899 }
    20900 @article{Freitag1981,
    20901   year = {1981},
    20902   title = {Resolution and contrast of crystalline objects in high-resolution scanning electron microscopy},
    20903   pages = {407-429},
    20904   journal = {Optik},
    20905   volume = {59},
    20906   author = {Freitag, J. and Rose, H.}
    20907 }
    20908 @incollection{Nellist2000a,
    20909   series = {113},
    20910   year = {2000},
    20911   title = {The principle and interpretation of annular dark-field Z-contrast imaging},
    20912   booktitle = {Advances in Imaging and Electron Physics},
    20913   pages = {147-203},
    20914   author = {Nellist, P.D. and Pennycook, S.J.}
    20915 }
    20916 @article{Zhu2012,
    20917   number = {7},
    20918   year = {2012},
    20919   title = {Faster {STORM} using compressed sensing},
    20920   pages = {721-726},
    20921   journal = {Nature Methods},
    20922   volume = {9},
    20923   author = {Zhu, L. and Zhang, W. and Elnatan, D. and Huang, B.}
    20924 }
    20925 @article{Zecevic2012,
    20926   number = {17},
    20927   year = {2012},
    20928   title = {Mesoporosity of Zeolite {Y}: Quantitative Three-Dimensional Study by Image Analysis of Electron Tomograms},
    20929   pages = {4213-4217},
    20930   journal = {Angewandte Chemie Int. Ed.},
    20931   volume = {51},
    20932   author = {Zecevic, J. and Gommes, C.J. and Friedrich, H. and
    20933 Jongh, P.E. de and Jong, K.P. de}
    20934 }
    20935 @article{Brilot2012,
    20936   year = {2012},
    20937   title = {Beam-induced motion of vitrified specimen on holey carbon film},
    20938   pages = {630-637},
    20939   journal = {Journal of Structural Biology},
    20940   volume = {177},
    20941   author = {Brilot, A.F. and Chen, J.Z. and Cheng, A. and Pan, J. and Harrison, S.C .and Potter, C.S. and Carragher, B. and Henderson, R. and Grigorieff, N.}
    20942 }
    20943 @article{Brettschneider2007,
    20944   year = {2007},
    20945   title = {Breaking the Diffraction Barrier in Fluorescence Microscopy by Optical Shelving},
    20946   pages = {218103},
    20947   journal = {Physical Review Letters},
    20948   author = {Bretschneider, S. and Eggeling, C. and Hell, S.W.}
    20949 }
    20950 @article{Testa2008,
    20951   number = {25},
    20952   year = {2008},
    20953   title = {Nanoscale separation of molecular species based
    20954 on their rotational mobility},
    20955   pages = {21094-21105},
    20956   journal = {Optics Express},
    20957   volume = {16},
    20958   author = {Testa, I. and {Sch\"onle}, A. and Middendoff, C. von and Geisler, C. and Medda, R. and Wurm, C.A. and Stiel, A.C. and Jakobs, S. and Bossi, M. and Eggeling, C. and Hell, S.W. and Egner, A.}
    20959 }
    20960 @article{Baddeley2011,
    20961   number = {5},
    20962   year = {2011},
    20963   title = {{4D} Super-Resolution Microscopy with Conventional
    20964 Fluorophores and Single Wavelength Excitation in
    20965 Optically Thick Cells and Tissues},
    20966   pages = {e20645},
    20967   journal = {PLOS one},
    20968   volume = {6},
    20969   author = {Baddeley, D. and Crossman, D. and Rossberger, S. and Cheyne, J.E. and Montgomery, J.M. and Jayasinghe, I.D. and Cremer, C. and Cannell, M.B. and {S\"oller}, C.}
    20970 }
    20971 @article{Testa2011,
    20972   year = {2010},
    20973   title = {Multicolor Fluorescence Nanoscopy in Fixed and  Living Cells by Exciting Conventional Fluorophores with a Single Wavelength},
    20974   pages = {2686-2694},
    20975   journal = {Biophysical Journal},
    20976   volume = {99},
    20977   author = {Testa, I. and Wurm, C.A. and Medda, R. and Rothermel, E. and Middendorf, C. von and {F\"olling}, J. and Jakobs, S. and {Sch\"onle}, A. and }
    20978 }
    20979 @article{Gunawerdene2011,
    20980   year = {2011},
    20981   title = {Superresolution Imaging of Multiple Fluorescent Proteins with Highly Overlapping Emission Spectra in Living Cells},
    20982   pages = {1522-1528},
    20983   journal = {Biophysical Journal},
    20984   volume = {101},
    20985   author = {Gunewardene, M.S. and Subach, F.V. and Gould, T.J. and Penoncello, G.P. and Gudheti, M.V. and Verkhusha, V.V. and Hess, S.T.}
    20986 }
    20987 @article{Bohmer2003,
    20988   number = {3},
    20989   year = {2003},
    20990   title = {Orientation imaging of single molecules by wide-field epifluorescence microscopy},
    20991   pages = {554-559},
    20992   journal = {Journal of the Optical Society of America B},
    20993   volume = {20},
    20994   author = {{B\"ohmer}, M. and Enderlein, J.}
    20995 }
    20996 @article{Fitzgerald2012,
    20997   year = {2012},
    20998   title = {Estimation Theoretic Measure of Resolution for Stochastic Localization Microscopy},
    20999   pages = {048102},
    21000   journal = {Physical Review Letters},
    21001   volume = {109},
    21002   author = {Fitzgerald, J.E. and Lu, J. and Schnitzer, M.J.}
    21003 }
    21004 @article{Test2012,
    21005   year = {2012},
    21006   title = {Test},
    21007   journal = {Nope},
    21008   author = {Ronald}
    21009 }
     1849  title = {A New Technique for Twiddle-Factor Elimination in Multidimensional {FFT}'
  • qipapers.html

    r516 r517  
    1414     (see http://www.lri.fr/~filliatr/bibtex2html/),
    1515     with the following command:
    16      /usr/bin/bibtex2html -o - -t qipapers.html -s plain /tmp/tmp0lKOdm.bib  -->
     16     /usr/bin/bibtex2html -o - -t qipapers.html -s plain /tmp/tmpRD3N9c.bib  -->
    1717
    1818<h1>qipapers.html</h1>
Note: See TracChangeset for help on using the changeset viewer.