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09/05/12 17:36:03 (13 years ago)

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-                      r518
+                      r519
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   year = {2012},
+  title = {Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model},
+  pages = {5896-5921},
+  journal = {Optics Express},
+  volume = {20},
+  author = {Stallinga, S. and Rieger, B.}
+}
+@article{Loeschberger2012,
+  number = {3},
+  year = {2012},
+  title = {Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution},
+  pages = {570-575},
+  journal = {Journal of Cell Sciences},
+  volume = {125},
+  author = {{L\"oschberger}, A. and Linde, S. van de and Dabauvalle, M.C. and Rieger, B. and Heilemann, M. and Krohne, G. and Sauer, M.}
+}
+@article{Broek2012,
+  year = {2012},
+  title = {Fully Automated Measurement of the Modulation Transfer Function of Charge-Coupled Devices above the Nyquist Frequency},
+  journal = {Microscopy and Microanalysis},
+  author = {Broek, W. van den and Aert, A. van and Dyck, D. van}
+}
+@article{Humphry2012,
+  year = {2012},
+  title = {Ptychographic electron microscopy using high-angle dark-field scattering for sub-nanometre resolution imaging},
+  pages = {730-736},
+  note = {DOI: 10.1038/ncomms1733},
+  journal = {Nature communications},
+  volume = {3},
+  author = {Humphry, M.J. and Kraus, B. and Hurst, A.C. and Maiden, A.M. and Rodenburg, J.M.}
+}
+@article{Zhang2012,
+  number = {1},
+  year = {2012},
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+  journal = {PLOS one},
+  volume = {7},
+  author = {Zhang, L. and ren, G.}
+}
+@mastersthesis{Nieuwenhuizen2011,
+  month = {March},
+  year = {2011},
+  title = {Resolution in localization microscopy},
+  address = {Delft, The Netherlands},
+  school = {Delft University of Technology},
+  author = {R.P.J. Nieuwenhuizen}
+}
+@book{Penczek2010,
+  year = {2010},
+  title = {Resolution Measures in Molecular Electron Microscopy},
+  note = {p 73-100},
+  volume = {482},
+  publisher = {Academic Press},
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+}
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+}
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+}
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+  number = {4},
+  year = {1986},
+  title = {The spatial frequency cut-off in three-dimensional imaging},
+  pages = {131--133},
+  journal = {Optik},
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+}
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+  number = {3},
+  year = {1986},
+  title = {The spatial frequency cut-off in three-dimensional imaging II},
+  pages = {128--129},
+  journal = {Optik},
+  volume = {74},
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+}
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+  year = {1978},
+  title = {Computer Techniques for Image Processing of Electron Microscopy},
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+}
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+  number = {3},
+  year = {1997},
+  title = {Structure of Keyhole Limpet Hemocyanin Type 1 (KLH1) at 15 A Resolution by Electron Cryomicroscopy and Angular Reconstitution},
+  pages = {417-437},
+  journal = {Journal of Molecular Biology},
+  volume = {271},
+  author = {Orlova, E.V. and Dube, P. and Harris, J.R. and Beckman, E. and Zemlin, F. and Markl, J. and  Heel, M. van}
+}
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+  year = {1996},
+  title = {On the Lambert-W function},
+  pages = {329-359},
+  journal = {Advances in Computational Mathematics},
+  volume = {5},
+  url = {http://dx.doi.org/10.1007/BF02124750},
+  author = {Corless, R. and Gonnet, G. and Hare, D. and Jeffrey, D. and Knuth, D.}
+}
+@article{Barry2000,
+  number = {1-2},
+  year = {2000},
+  title = {Analytical approximations for real values of the {Lambert W-function}},
+  pages = {95-103},
+  journal = {Mathematics and Computers in Simulation},
+  volume = {53},
+  url = {http://www.sciencedirect.com/science/article/pii/S0378475400001725},
+  author = {Barry,D.A  and  Parlange, J.-Y and  Li, L. and  Prommer, H. and Cunningham, C.J. and Stagnitti, F.}
+}
+@article{Ram2009,
+  number = {8},
+  year = {2009},
+  title = {Improved single particle localization accuracy with dual objective multifocal plane mircoscopy},
+  pages = {6881-6898},
+  journal = {Optics Express},
+  volume = {17},
+  author = {Ram, S. and Prabhat, P. and Ward, E.S. and Ober, R.J.}
+}
+@article{Wong2011,
+  number = {3},
+  year = {2011},
+  title = {Limit of the Accuracy of Parameter Estimation for Moving Single Molecules Imaged by Fluorescence Microscopy},
+  pages = {895-911},
+  journal = {IEEE Transactions on Signal Processing},
+  volume = {59},
+  author = {Wong, Y. and Lin, Z. and Ober, R.J.}
+}
+@article{Chao2012,
+  year = {2012},
+  title = {Fisher information matrix for branching processes
+with application to electron-multiplying charge-coupled devices},
+  pages = {349-379},
+  journal = {Multidimensional System and Signal Processing},
+  volume = {23},
+  author = {Chao, J. and Ward, E.S. and Ober, R.J.}
+}
+@article{Dempsey2011,
+  number = {12},
+  year = {2011},
+  title = {Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging},
+  pages = {1027-1031},
+  journal = {Nature Methods},
+  volume = {8},
+  author = {Dempsey, G.T. and Vaughan, J.C. and Chen, K.H. and Bates, M. and Zhuang, X.}
+}
+@article{Manely2008,
+  number = {2},
+  year = {2008},
+  title = {High-density mapping of single-molecule trajectories with photoactivated localization microscopy},
+  pages = {156-158},
+  journal = {Nature Methods},
+  volume = {5},
+  author = {Manely, S. and Gilette, J.M. and Patterson, G.H. and Shroff, H. and Hess, H.F. and Betzig, E. and Lippincott-Schwarz, J.}
+}
+@article{Wicker2010a,
+  year = {2010},
+  title = {Single-shot optical sectioning using polarization-coded structured illumination},
+  pages = {084010},
+  journal = {Journal of Optics},
+  author = {Wicker, K. and Heintzmann, R.}
+}
+@article{Schoen2011,
+  year = {2011},
+  title = {Binding-Activated Localization Microscopy of {DNA} Structures},
+  journal = {Nano Letters},
+  author = {Schoen, I. and Ries, J. and Klotzsch, E. and Ewers, H. and Vogel, V.}
+}
+@article{Vrabioiu2006,
+  number = {28},
+  year = {2006},
+  title = {Structural insights into yeast septin organization
+from polarized fluorescence microscopy},
+  pages = {446-449},
+  journal = {Nature},
+  volume = {443},
+  author = {Vrabioiu, A.M. and Mitschison, T.J.}
+}
+@article{Lukosz1962a,
+  number = {4},
+  year = {1962},
+  title = {{\"Ubertragung} nicht-negativer Signale durch lineare Filter},
+  pages = {335-364},
+  journal = {Journal of Modern Optics},
+  volume = {9},
+  author = {Lukosz, W.}
+}
+@article{Fitzhugh1983,
+  year = {1983},
+  title = {Statistical Properties of the Asymmetric Random Telegraph Signal, with Applications to Single-Channel Analysis},
+  pages = {75-89},
+  journal = {Mathematical Biosciences},
+  volume = {64},
+  author = {R. Fitzhugh}
+}
+@article{Bobroff1986,
+  number = {6},
+  year = {1986},
+  title = {Position measurement with a resolution and noiselimited instrument},
+  pages = {1152-1157},
+  journal = {Review of Scientifric Instruments},
+  volume = {57},
+  author = {N. Bobroff}
+}
+@article{Heintzmann2007,
+  year = {2007},
+  title = {Estimating missing information by maximum likelihood deconvolution},
+  pages = {136-144},
+  journal = {Micron},
+  volume = {38},
+  author = {Heintzmann, R.}
+}
+@article{Annibale2011,
+  number = {7},
+  year = {2011},
+  title = {Identification of clustering artifacts in
+photoactivated localization microscopy},
+  pages = {527-528},
+  journal = {Nature Methods},
+  volume = {8},
+  author = {Annibale, P. and Vanni, S. and Scarelli, M. and Rothlisberger, U. and Radenovic, A.}
+}
+@article{Ta2010,
+  number = {1},
+  year = {2010},
+  title = {An Extended Scheme for Counting Fluorescent Molecules by Photon- Antibunching},
+  pages = {119-124},
+  journal = {Laser Physics},
+  volume = {20},
+  author = {Ta, H. and Wolfrum, J. and Herten, D.-P.}
+}
+@article{Tian2012,
+  number = {8},
+  year = {2012},
+  title = {Experimental compressive phase space tomography},
+  pages = {8296-8308},
+  journal = {Optics Express},
+  volume = {20},
+  author = {Tian, L. and Lee, J. and Oh, S.B. and Barbastathis, G.}
+}
+@article{Waller2011,
+  number = {3},
+  year = {2011},
+  title = {Phase and amplitude imaging from noisy images by Kalman filtering},
+  pages = {2805-2815},
+  journal = {Optics Express},
+  volume = {19},
+  author = {Waller, L. and Tsang, M. and Ponda, S. and Young Yang, S. and Barbastathis, G.}
+}
+@inproceedings{Kurz2012,
+  series = {SPIE},
+  year = {2012},
+  title = {Quantification of fluorescent samples by photon-antibunching},
+  booktitle = {Single Molecule Spectroscopy and Superresolution Imaging V},
+  pages = {82280K-1},
+  editor = {Enderlein, J. and Karol, Z. and Erdmann, R. and Koberling, F. and Gregor, I.},
+  author = {Kurz, A. and Schwering, M. and Herten, D.-P.}
+}
+@article{Harms1999,
+  year = {1999},
+  title = {Single-Molecule Anisotropy Imaging},
+  pages = {2864-2870},
+  journal = {Bipphysical Journal},
+  volume = {77},
+  author = {Harms, G.S. and Sonnleitner, M. and {Sch\"utz}, G.J. and Gruber, H.J. and Schmidt, T.}
+}
+@article{Uji2006,
+  year = {2006},
+  title = {Visualizing spatial and temporal heterogeneity of single molecule rotational diffusion in a  glassy polymer by defocused wide-field imaging},
+  pages = {2511-2518},
+  journal = {Polymer},
+  volume = {47},
+  author = {Uij-i, H. and Melnikov, S.M. and Deres, A. Bergamini, G. and Schryver, F. de and Herrmann, A. and {M\"ullen}, K. and Enderlein, J. and Hofkens, J.}
+}
+@article{Ruiter1997,
+  year = {1997},
+  title = {Single Molecule Rotational and Translational Diffusion Observed by Near-Field Scanning Optical Microscopy},
+  pages = {7318-7323},
+  journal = {Journal of Physical Chemistry},
+  volume = {101},
+  author = {Ruiter, A.G.T. and Veerman, J.A. and Garcia-Parajo, M.F. and Hulst, N.F. van}
+}
+@article{Pieper2011,
+  year = {2011},
+  title = {Fluorescence correlation spectroscopy as a tool  for measuring the rotational diffusion of macromolecules},
+  pages = {1-11},
+  journal = {Chemical Physics Letters},
+  volume = {516},
+  author = {Pieper, C.M. and Enderlein, J.}
+}
+@article{Loman2011,
+  year = {2010},
+  title = {Measuring rotational diffusion of macromolecules by fluorescence correlation spectroscopy},
+  pages = {627-636},
+  journal = {Photochem. Photobiol. Sci.},
+  volume = {9},
+  author = {Loman, A. and Gergor, I. and Stutz, C. and Mund, M. and Enderlein, J.}
+}
+@article{Adhikarietal2011,
+  year = {2011},
+  title = {Temperature dependent single molecule rotational dynamics in {PMA}},
+  pages = {1849-1856},
+  journal = {Phys. Chem. Chem. Phys.},
+  volume = {13},
+  author = {Adhikari, S. and Selmke, M. and Cichos, F.}
+}
+@article{Malkusch2012,
+  year = {2012},
+  title = {Coordinate-based colocalization analysis of single-molecule localization microscopy data},
+  pages = {1-10},
+  journal = {Histochem Cell Biol},
+  volume = {137},
+  author = {Malkusch, S. and Endesfelder, U. and Mondry, J. and Helleri, M. and Verveer, P.J. and Heilemann, M.}
+}
+@article{Kazantsev2010,
+  year = {2010},
+  title = {Fully three-dimensional defocus-gradient corrected backprojection in cryoelectron microscopy},
+  pages = {1128-1142},
+  journal = {Ultramicroscopy},
+  volume = {110},
+  author = {Kazantsev, I. and Klukowska, J. and Herman, G.T. and Cernetic, L.}
+}
+@article{Mariani2011,
+  year = {2011},
+  title = {Simulation and correction of electron images of tilted planar weak-phase samples},
+  pages = {259-268},
+  journal = {Journal of Structural Biology},
+  volume = {174},
+  author = {Mariani, V. and Schenk, A.D. and Philippsen, A. and Engel, A.}
+}
+@inproceedings{Studer2012,
+  series = {Proceedings of the SPIE},
+  year = {2012},
+  title = {Hyperspectral fluorescence microscopy based on compressed sensing },
+  booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIX},
+  note = {doi: 10.1117/12.908532},
+  editor = {Conchello, J.-A. and Cogswell, C.J. and  Wilson, T. and  Brown, T.G.},
+  author = {Studer, V. and Bobin, J. and Chahid, M. and Moussavi, H. and Candes, E. and Dahan, M.}
+}
+@article{Gabor1946b,
+  year = {1946},
+  title = {Theory of Communication: Part II: The analysis of hearing},
+  pages = {442-445},
+  journal = {Journal of the Institution of Electrical Engineers},
+  volume = {93},
+  author = {Gabor, D.}
+}
+@article{Gabor1946c,
+  year = {1946},
+  title = {Theory of Communication: Part III: Frequency Compression and Expansion},
+  pages = {445-457},
+  journal = {Journal of the Institution of Electrical Engineers},
+  volume = {93},
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+}
+@article{Chruchmann2012,
+  year = {2012},
+  title = {Colocalization of fluorescent probes: accurate and precise registration with  nanometer resolution},
+  pages = {141-150},
+  note = {doi:10.1101/pdb.top067918},
+  journal = {Cold Spring Harbor Protocolls},
+  author = {Churchmann, L.S. and Spudich, J.A.}
+}
+@article{Dedecker2009,
+  year = {2012},
+  title = {Defocused Wide-field Imaging Unravels Structural and Temporal Heterogeneity in Complex Systems},
+  pages = {1079-1090},
+  journal = {Advanced Materials},
+  volume = {21},
+  author = {Dedecker, P. and Muls, B. and Deres, A. and Uji-i, H. and Hotta, J. and Sliwa, M. and Soumillion, J.-P. and {M\"ullen}, K. and Enderlein, J. and Hofkens, J.}
+}
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+  number = {10},
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+}
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+  number = {2},
+  year = {2002},
+  title = {Three-Dimensional Single Molecule Rotational Diffusion in Glassy State Polymer Films},
+  pages = {026101},
+  journal = {Physical Review Letters},
+  volume = {89},
+  author = {Bartko, A.P. and Xu, K. and Dickson, R.M.}
+}
+@article{Gould2008,
+  number = {12},
+  year = {2008},
+  title = {Nanoscale imaging of molecular positions and anisotropies},
+  pages = {1027-1031},
+  journal = {Nature Methods},
+  volume = {5},
+  author = {Gould, T.J. and Gunewardene, M.S. and Gudheti, M.V. and Verkhusha, V.V. and Yin, S.-R. and Gosse, J.A. and Hess, S.T.}
+}
+@article{Hernando2006,
+  year = {2006},
+  title = {Effect of Disorder on Ultrafast Exciton Dynamics Probed by Single Molecule Spectroscopy},
+  pages = {216403},
+  journal = {Physical Review Letters},
+  volume = {97},
+  author = {Hernando, J. and Dijk, E.M.H.P. van and Hoogenboom, J.P. and Garcia-Lopez, J.-J. and Reinhoudt, D.N. and Crego-Calama, M. and Garcia-Parajo, M.F. and Hulst, N.F. van}
+}
+@article{Simmonds2011,
+  number = {24},
+  year = {2011},
+  title = {Three dimensional laser microfabrication in diamond using a dual adaptive optics system},
+  pages = {24122-24128},
+  journal = {Optics Express},
+  volume = {19},
+  author = {Simmonds, R.D. and Salter, P.S. and Jesacher, A. and Booth, M.J.}
+}
+@article{Cumming2011,
+  number = {10},
+  year = {2011},
+  title = {Adaptive aberration compensation for three-dimensional micro-fabrication of photonic crystals in lithium niobate},
+  pages = {9419-9426},
+  journal = {Optics Express},
+  volume = {19},
+  author = {Cumming, B.P. and Jesacher, A. and Booth, M.J. and Wilson, T. and Gu, M.}
+}
+@article{Marshall2011,
+  number = {5},
+  year = {2011},
+  title = {Three-dimensional imaging of direct-written photonic structures},
+  pages = {695-697},
+  journal = {Optics Letters},
+  volume = {36},
+  author = {Marshall, G.D. and Jesacher, A. and Thayil, A. and Withford, M.J. and Booth, M.}
+}
+@article{Chizhik2011,
+  year = {2011},
+  title = {Probing the Radiative Transition of Single m olecules with a Tunable Microresonator},
+  pages = {1700-1703},
+  journal = {Nano Letters},
+  volume = {11},
+  author = {Chizihik, A.I. and Chizhik, A.M. and Khoptyar, D. and {B\"ar}, S. and Meixner, A.J. and Enderlein, J.}
+}
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+  year = {2007},
+  title = {Intracelluar objects tracking},
+  pages = {569-578},
+  journal = {European Journal of Cell Biology},
+  volume = {86},
+  author = {Kalaidzidis, Y.}
+}
+@article{Kalaidzidis2009,
+  year = {2009},
+  title = {Multiple objects tracking in fluorescence microscopy},
+  pages = {57-80},
+  journal = {Journal of Mathematical Biology},
+  volume = {58},
+  author = {Kalaidzidis, Y.}
+}
+@article{Rink2005,
+  year = {2005},
+  title = {Rab Conversion as a Mechanism of Progression
+from Early to Late Endosomes},
+  pages = {735-749},
+  journal = {Cell},
+  volume = {122},
+  author = {Rink, J. and Ghigo, E. and Kalaidzidis, Y. and Zerial, M.}
+}
+@inproceedings{Bryne2012,
+  month = {May 2-5},
+  year = {2012},
+  title = {MODELS FOR BIOMEDICAL IMAGE RECONSTRUCTION
+BASED ON INTEGRAL APPROXIMATION METHODS},
+  booktitle = {IEEE International Symposium on Biomedical Imaging},
+  pages = {70-73},
+  address = {Barcelona, Spain},
+  author = {Bryne, C. and Gordon, D. and Heilper, D.},
+  organization = {IEEE}
+}
+@inproceedings{Becker2012,
+  month = {May 2-5},
+  year = {2012},
+  title = {FROM TIMELAPSE-DATA TO GENEALOGIC TREES: USING DIFFERENT CONTRAST
+MECHANISMS TO IMPROVE CELL TRACKING},
+  booktitle = {IEEE International Symposium on Biomedical Imaging},
+  pages = {386-389},
+  address = {Barcelona, Spain},
+  author = {Becker, T. and Rapoport, D.H. and Mamlouk, A.M.},
+  organization = {IEEE}
+}
+@inproceedings{Wang2012,
+  month = {May 2-5},
+  year = {2012},
+  title = {A HYBRID TOTAL-VARIATION MINIMIZATION APPROACH TO COMPRESSED SENSING},
+  booktitle = {IEEE International Symposium on Biomedical Imaging},
+  pages = {74-77},
+  address = {Barcelona, Spain},
+  author = {Wang, Y. and Liang, D. and Chang, Y. and Ying, L.},
+  organization = {IEEE}
+}
+@inproceedings{Cohen2012,
+  month = {May 2-5},
+  year = {2012},
+  title = {IMAGE REGISTRATION ERROR ANALYSIS WITH APPLICATIONS IN SINGLE MOLECULE MICROSCOPY},
+  booktitle = {IEEE International Symposium on Biomedical Imaging},
+  pages = {966-969},
+  address = {Barcelona, Spain},
+  author = {Cohen, E.A.K. and Ober, R.J.},
+  organization = {IEEE}
+}
+@inproceedings{Hu2012,
+  month = {May 2-5},
+  year = {2012},
+  title = {MITOSIS DETECTION OF HEMATOPOIETIC STEM CELL POPULATIONS IN TIME-LAPSE PHASE-CONTRAST MICROSCOPY IMAGES},
+  booktitle = {IEEE International Symposium on Biomedical Imaging},
+  pages = {390-393},
+  address = {Barcelona, Spain},
+  publisher = {IEEE},
+  author = {Huh, S. and Eom, S. and Elmer Ker, D.F. and Weiss, L. and Kanade, T.}
+}
+@inproceedings{Stallinga2012a,
+  month = {May 2-5},
+  year = {2012},
+  title = {THE EFFECT OF BACKGROUND ON LOCALIZATION UNCERTAINTY IN SINGLE EMITTER IMAGING},
+  booktitle = {IEEE International Symposium on Biomedical Imaging},
+  pages = {988-991},
+  address = {Barcelona, Spain},
+  publisher = {IEEE},
+  author = {Stallinga, S. and Rieger, B.}
+}
+@inproceedings{Wong2012,
+  month = {May 2-5},
+  year = {2012},
+  title = {Effect of Time Discretization on the Limit of the
+Accuracy of Parameter Estimation for Moving
+Single Molecules Imaged by Fluorescence
+Microscopy},
+  booktitle = {IEEE International Symposium on Biomedical Imaging },
+  pages = {1228-1231},
+  address = {Barcelona, Spain},
+  author = {Wong, Y. and Lin, Z. and Ober, R.J.}
+}
+@inproceedings{Ducroz2012,
+  month = {May 2-5},
+  year = {2012},
+  title = {CHARACTERIZATION OF CELL SHAPE AND DEFORMATION IN 3D USING SPHERICAL HARMONICS},
+  booktitle = {IEEE International Symposium on Biomedical Imaging },
+  address = {Barcelona, Spain},
+  author = {Ducroz, C. and Olivio-Marin, J.-C. and Dufor, A.},
+  organization = {IEEE}
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