Changeset 537


Ignore:
Timestamp:
09/06/12 12:01:09 (13 years ago)
Author:
qipapers
Message:

commit via qipapers

Files:
2 edited

Legend:

Unmodified
Added
Removed
  • qipapers.bib

    r536 r537  
    97679767}
    97689768@inproceedings{Kalitzin1997,
     9769  series = {Lecture Notes in Computer Science},
     9770  month = {July},
     9771  year = {1997},
     9772  title = {Invertible Orientation Bundles on 2D Scalar Images},
     9773  booktitle = {Proceedings of the First International Conference on Scale-Space Theory in Computer Vision},
     9774  pages = {77--88},
     9775  publisher = {Springer-Verlag},
     9776  author = {Kalitzin, S.N. and ter Haar Romeny, B.M. and Viergever, M.A.}
     9777}
     9778@article{Koenderink1992,
     9779  number = {6},
     9780  month = {June},
     9781  year = {1992},
     9782  title = {Generic Neighborhood Operators},
     9783  pages = {597--605},
     9784  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     9785  volume = {14},
     9786  author = {Koenderink, J.J. and Doorn, A.J. van}
     9787}
     9788@article{Koenderink1990,
     9789  year = {1990},
     9790  title = {Receptive Field Families},
     9791  pages = {291--297},
     9792  journal = {Biological Cybernetics},
     9793  volume = {63},
     9794  author = {Koenderink, J.J. and Doorn, A.J. van}
     9795}
     9796@inproceedings{Haussecker1996,
     9797  series = {Proceedings in Artificial Intelligence 3},
     9798  month = {November 18--19},
     9799  year = {1996},
     9800  title = {A Tensor Approach for Local Structure Analysis in Multi-Dimensional Images},
     9801  booktitle = {Proceedings 3D Image Analysis and Synthesis},
     9802  pages = {171--178},
     9803  editor = {Girod, B. and Niemann, H. and Seidel, H.-P.},
     9804  author = {{Hau\ss ecker}, H. and {J\"ahne}, B.},
     9805  organization = {{Universit\"at} Erlangen-{N\"urnberg}}
     9806}
     9807@article{Kalitzin1999,
     9808  number = {2/3},
     9809  year = {1999},
     9810  title = {Invertible Apertured Orientation filters in Image Analysis},
     9811  pages = {145--158},
     9812  journal = {International Journal of Computer Vision},
     9813  volume = {31},
     9814  author = {Kalitzin, S.N. and Haar Romeny, B. ter and Viergever, M.A.}
     9815}
     9816@inproceedings{Haussecker1997,
     9817  series = {Informatik Aktuell},
     9818  month = {September 15-17},
     9819  year = {1997},
     9820  title = {A tensor approach for precise computation of dense displacement vector fields},
     9821  booktitle = {Proc. Mustererkennung 1997 (Braunschweig, Germany)},
     9822  pages = {199--208},
     9823  editor = {Paulus, E. and Wahl, F.M.},
     9824  publisher = {Springer},
     9825  author = {{Hau\ss ecker}, H. and {J\"ahne}, B.}
     9826}
     9827@inproceedings{Vliet1993a,
     9828  year = {1993},
     9829  title = {Curvature and Bending Energy in Digitized 2D and 3D Images},
     9830  booktitle = {8th Scandinavian Conference on Image Analysis, {Troms\o } Norway},
     9831  pages = {1403--1410},
     9832  author = {Vliet, L.J. van and Verbeek, P.W.}
     9833}
     9834@article{Cam1994,
     9835  number = {3},
     9836  year = {1994},
     9837  title = {Conformational Analysis of a 139 Base-pair {DNA} Fragment Containing a Single-stranded Break and Its Interaction with {Human Poly(ADP-ribose)} Polymerase},
     9838  pages = {1062-1071},
     9839  journal = {Journal of Molecular Biology},
     9840  volume = {235},
     9841  author = {Cam, E. le and Fack, F. and Menissier-de Murcia, J. and Cognet, J.A.H. and Barbin, A. and Sarantoglou, V. and Revet, B. and Delain, E. and Murcia, G. de}
     9842}
     9843@article{Digman2005,
     9844  year = {2005},
     9845  title = {Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure},
     9846  journal = {Biophysical Journal - Biophysical Letters},
     9847  author = {Digman, M.A. and Sengupta, P. and Wiseman, P.W. and Brown, C.M. and Howritz, A.R. and Grattown, E.}
     9848}
     9849@article{Bangham1996a,
     9850  number = {5},
     9851  year = {1996},
     9852  title = {Scale-Space From Nonlinear Filters},
     9853  pages = {520--528},
     9854  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     9855  volume = {18},
     9856  author = {Bangham, J.A. and Ling, P.D. and Harvey, R.}
     9857}
     9858@article{Talbot2000,
     9859  month = {December},
     9860  year = {2000},
     9861  title = {Image Analysis of Insulation Mineral Fibres},
     9862  pages = {251--268},
     9863  journal = {Journal of Microscopy},
     9864  volume = {200, Pt 3},
     9865  author = {Talbot, H. and Lee, T. and Jeulin, D. and Hanton, D. and Hobbs, L.W.}
     9866}
     9867@article{Dietrich2004,
     9868  number = {14},
     9869  year = {2004},
     9870  title = {Nanoarrays: A Method for Performing Enzymatic Assays},
     9871  pages = {4112-4117},
     9872  journal = {Analytical Chemistry},
     9873  volume = {76},
     9874  author = {Dietrich, H.R.C. and Knoll, J. and Doel, L.R. van den and Dedem, G.W.K. van and Daran-Lapujade, P.A.S. and Vliet, L.J. van and Moerman, R. and Pronk, J.R. and Young, I.T.}
     9875}
     9876@inproceedings{Laptev2003,
     9877  series = {Lecture Notes on Computer Science },
     9878  year = {2003},
     9879  title = {Interest point detection and scale-selection in space-time},
     9880  booktitle = {Proceedings of the fourth Int. Conf. on Scale Space},
     9881  pages = {372-387},
     9882  editor = {Griffin, L.D. and Lillholm, M.},
     9883  volume = {2695},
     9884  address = {Isle of Skye, United Kingdom},
     9885  author = {Laptev, I. and Lindeberg, T.}
     9886}
     9887@article{Thomson1982,
     9888  number = {9},
     9889  month = {September},
     9890  year = {1982},
     9891  title = {Spectrum Estimation and Harmonic Analysis},
     9892  pages = {1055--1096},
     9893  journal = {Proceedings of the IEEE},
     9894  volume = {70},
     9895  author = {Thomson, D.J.}
     9896}
     9897@misc{Dorst1999a,
     9898  year = {1999},
     9899  title = {{Clifford} Algebra: a Practical Tool for Efficient Geometrical Representation},
     9900  note = {Tutorial presentation},
     9901  author = {Dorst, L.}
     9902}
     9903@phdthesis{Hansen1995,
     9904  year = {1995},
     9905  title = {Spatial Statistics for Network Structures in Processed Milk},
     9906  address = {Copenhagen, Denmark},
     9907  school = {The Royal Veterinary and Agricultural University Copenhagen},
     9908  author = {Hansen, M.B.}
     9909}
     9910@article{Hansen1999,
     9911  number = {1},
     9912  year = {1999},
     9913  title = {First Contact Distributions for Spatial Patterns: Regularity and Estimation},
     9914  pages = {15--33},
     9915  journal = {Advances in Applied Probability},
     9916  volume = {31},
     9917  author = {Hansen, M.B. and Baddeley, A.J. and Gill, R.D.}
     9918}
     9919@article{Stockman1977,
     9920  number = {11},
     9921  year = {1977},
     9922  title = {Equivalence of {Hough} Curve Detection to Template Matching},
     9923  pages = {820--822},
     9924  journal = {Communications of the {ACM}},
     9925  volume = {20},
     9926  annote = {key_radon},
     9927  author = {Stockman, G.C. and Agrawala, A.K.}
     9928}
     9929@article{Li1994a,
     9930  number = {12},
     9931  year = {1994},
     9932  title = {Approximation of an Arbitrary Filter and its Recursive Implementation},
     9933  pages = {1767--1774},
     9934  journal = {Pattern Recognition},
     9935  volume = {27},
     9936  author = {Li, B.C. and Ma, S.D.}
     9937}
     9938@article{Endres1997,
     9939  number = {1},
     9940  month = {January/February},
     9941  year = {1997},
     9942  title = {Incorporating Pore Geometry and Fluid Pressure Communication into Modeling the Elastic Behavior of Porous Rocks},
     9943  pages = {106--117},
     9944  journal = {Geophysics},
     9945  volume = {62},
     9946  author = {Endres, A.L. and Knight, R.J.}
     9947}
     9948@article{Hansen1997,
     9949  number = {3},
     9950  year = {1997},
     9951  title = {Understanding the {Hough} Transform: {Hough} Cell Support and its Utilization},
     9952  pages = {205--218},
     9953  journal = {Image and Vision Computing},
     9954  volume = {15},
     9955  author = {Hansen, K. and Andersen, J.D.}
     9956}
     9957@article{Maxwell1870,
     9958  number = {269},
     9959  year = {1870},
     9960  title = {On Hills and Dales},
     9961  pages = {421--427},
     9962  journal = {The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science},
     9963  volume = {40},
     9964  author = {Maxwell, J.C.}
     9965}
     9966@article{Qian2000,
     9967  year = {2000},
     9968  title = {Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials},
     9969  pages = {137-143},
     9970  journal = {Biophysical Journal},
     9971  volume = {79},
     9972  author = {Qian, H. and Elson, E.L.}
     9973}
     9974@article{Jain2000,
     9975  number = {1},
     9976  year = {2000},
     9977  title = {Statistical Pattern Recognition: A Review},
     9978  pages = {4--37},
     9979  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     9980  volume = {22},
     9981  author = {Jain, A.K. and Duin, R.P.W. and Mao, J.}
     9982}
     9983@article{Watson1953,
     9984  number = {4356},
     9985  month = {April},
     9986  year = {1953},
     9987  title = {Molecular Structure of Nucleic Acids},
     9988  pages = {737--738},
     9989  journal = {Nature},
     9990  volume = {171},
     9991  author = {Watson, J.D. and Crick, F.H.C.}
     9992}
     9993@inproceedings{Knutsson1989kort,
     9994  year = {1989},
     9995  title = {Representing Local Structure Using Tensors },
     9996  booktitle = {SCIA'89},
     9997  pages = {244--251},
     9998  author = {Knutsson, H.}
     9999}
     10000@article{Chadoeuf2000,
     10001  month = {October},
     10002  year = {2000},
     10003  title = {Testing Local Dependence of Spatial Structures on Images},
     10004  pages = {32--41},
     10005  journal = {Journal of Microscopy},
     10006  volume = {200, Pt 1},
     10007  author = {Chadoeuf, J. and Brix, A. and Pierret, A. and Allard, D.}
     10008}
     10009@article{Brock2003,
     10010  year = {2003},
     10011  title = {Quantitative image analysis of cellular protein translocation induced by magnetic microspheres: Application to the EGF receptor},
     10012  pages = {1-11},
     10013  journal = {Cytometry Part A},
     10014  volume = {52A},
     10015  author = {Brock, R. and Jovin, T.M. }
     10016}
     10017@article{Costes2004,
     10018  year = {2004},
     10019  title = {Automatic and Quantitative Measurement of Protein-Protein Colocalization in Live Cells},
     10020  pages = {3993-4003},
     10021  journal = {Biophysical Journal},
     10022  volume = {86},
     10023  author = {Costes, S.V. and Daelemans, D. and Cho, E.H. and Dobbin, Z. and Pavlakis, G. and Lockett, S.}
     10024}
     10025@article{Zhou2003,
     10026  year = {2003},
     10027  title = {Cytoplasmic Ployhedrosis Virus Structure at 8 by Electron Cryomicroscopy: Structural Basis of Capsid Stability and {mRNA} Processing Regulation},
     10028  pages = {651-663},
     10029  journal = {Structure},
     10030  volume = {1},
     10031  author = {Zhou, Z.H. and Zhang, H. and Jakana, J. and Lu, X.-Y. and Zhang, J.-Q.}
     10032}
     10033@article{Zhou2000,
     10034  year = {2000},
     10035  title = {Seeing the Herpesvirus Capsid at 8.5},
     10036  pages = {877-880},
     10037  journal = {Science},
     10038  volume = {288},
     10039  author = {Zhou, Z.H. and Dougherty, M. Jakana, J. and He, J. and Rixon, F.J. and Chiu, W.}
     10040}
     10041@article{Zhou2001,
     10042  number = {26},
     10043  year = {2001},
     10044  title = {The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes},
     10045  pages = {14802-14807},
     10046  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     10047  volume = {98},
     10048  author = {Zhou, Z.H. and McCarthy, D.B. and O'Conor, C.M. and Reed, L.J. and Stoops, J.K.}
     10049}
     10050@article{Medintz2004,
     10051  year = {2004},
     10052  title = {Reversible Modulation of Quantum Dot Photoluminescence Using a Protein- Bound Photochromic Fluorescence Resonance Energy Transfer Acceptor},
     10053  pages = {30-31},
     10054  journal = {Journal of the American Chemical Society},
     10055  volume = {126},
     10056  author = {Medintz, I.L. and Trammell, S.A. and Mattoussi, H. and Mauro, J.M.}
     10057}
     10058@article{Cherny2005,
     10059  number = {3},
     10060  year = {2005},
     10061  title = {Sequestering of p53 into {DNA}-protein filaments revealed by electron microscopy},
     10062  pages = {261-271},
     10063  journal = {Biophysical Chemistry},
     10064  volume = {114},
     10065  author = {Cherny, D.I. and Brzdov4, M. and Pale\v{c}ek, J. and Pale\v{c}ek, E. and Jovin, T.M.}
     10066}
     10067@article{Cherny2004,
     10068  number = {4},
     10069  year = {2004},
     10070  title = {Double-stranded {DNA} stimulates the fibrillation of $\alpha$-synuclein in vitro and is associated with the mature fibrils: An electron microscopy study},
     10071  pages = {929-938},
     10072  journal = {Journal of Molecular Biology},
     10073  volume = {344},
     10074  author = {Cherny, D.I. and Hoyer, W. and Subramaniam, V. and Jovin, T.M.}
     10075}
     10076@article{Cherny2001,
     10077  number = {2},
     10078  year = {2001},
     10079  title = {Electron and scanning force microscopy studies of alterations in supercoiled {DNA} tertiary structure},
     10080  pages = {295-307},
     10081  journal = {Journal of Molecular Biology},
     10082  volume = {313},
     10083  author = {Cherny, D.I. and Jovin, T.M.}
     10084}
     10085@article{Comer1999,
     10086  number = {3},
     10087  year = {1999},
     10088  title = {Morphological Operations for Color Image Processing},
     10089  pages = {279-189},
     10090  journal = {Journal of Electronic Imaging},
     10091  volume = {8},
     10092  author = {Comer, M. L. and Delp, E. J.}
     10093}
     10094@inproceedings{Farnebaeck2000,
     10095  month = {September},
     10096  year = {2000},
     10097  title = {Fast and {A}ccurate {M}otion {E}stimation using {O}rientation {T}ensors and {P}arametric {M}otion {M}odels},
     10098  booktitle = {Proceedings of 15th International Conference on Pattern Recognition},
     10099  pages = {135--139},
     10100  volume = {1},
     10101  address = {Barcelona, Spain},
     10102  annote = {Also as Technical Report LiTH-ISY-R-2254},
     10103  author = {G. {Farneb\"ack}},
     10104  organization = {IAPR}
     10105}
     10106@inproceedings{Farnebaeck2003,
     10107  series = {LNCS 2749},
     10108  month = {June 29 -July 2},
     10109  year = {2003},
     10110  title = {Two-Frame Motion Estimation Based on Polynomial Expansion},
     10111  booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
     10112  pages = {363-370},
     10113  editor = {{Big\"un}, J. and Gustavsson, T.},
     10114  address = {Berlin},
     10115  publisher = {Springer-Verlag},
     10116  author = {{Farneb\"ack}, G.}
     10117}
     10118@article{Freitag2005,
     10119  year = {2005},
     10120  title = {Breaking the spherical and chromatic aberration barrier in transmission electron microscopy},
     10121  pages = {209-214},
     10122  journal = {Ultramicroscopy},
     10123  volume = {102},
     10124  author = {Freitag, B. and Kujawa, S. and Mul, P.M. and Ringnalda, J. and Tiemeijer, P.C.}
     10125}
     10126@article{Lidke2005,
     10127  number = {9},
     10128  year = {2005},
     10129  title = {The role of photon statistics in fluorescence anisotropy imaging},
     10130  pages = {1237-1245},
     10131  journal = {IEEE Transactions on Image Processing},
     10132  volume = {14},
     10133  author = {Lidke, K.A. and Rieger, B. and Lidke, D.S. and Jovin, T.M.}
     10134}
     10135@article{Lidke2003,
     10136  number = {5},
     10137  year = {2003},
     10138  title = {Imaging molecular interactions in cells by dynamic and static fluorescence anisotropy ({rFLIM} and {emFRET})},
     10139  pages = {1020-1027},
     10140  journal = {Biochemical Society Transactions},
     10141  volume = {31},
     10142  author = {Lidke, D.S. and Nagy, P. and Barisas, B.G. and Heintzmann, R. and Post, J.N. and Lidke, K.A. and Clayton, A.H.A. and Arndt-Jovin, D.J. and Jovin, T.M.}
     10143}
     10144@article{Lidke2004,
     10145  number = {2},
     10146  year = {2004},
     10147  title = {Quantum dot ligands provide new insights into {erbB/HER} receptor-mediated signal transduction},
     10148  pages = {198-203},
     10149  journal = {Nature Biotechnology},
     10150  volume = {22},
     10151  author = {Lidke, D.S. and Nagy, P. and Heintzmann, R. and Arndt-Jovin, D.J. and Post, J.N. and Grecco, H. and Jares-Erijman, E.A. and Jovin, T.M.}
     10152}
     10153@article{Dubuc2001a,
     10154  number = {1--2},
     10155  year = {2001},
     10156  title = {Complexity, Confusion, and Perceptual Grouping. Part {II}: Mapping Complexity},
     10157  pages = {83--116},
     10158  journal = {Journal of Mathematical Imaging and Vision},
     10159  volume = {15},
     10160  author = {Dubuc, B. and Zucker, S.W.}
     10161}
     10162@article{Larkin2001a,
     10163  number = {8},
     10164  month = {August},
     10165  year = {2001},
     10166  title = {Natural Demodulation of Two-Dimensional Fringe Patterns. {II}. Stationary Phase Analysis of the Spiral Phase Quadrature Transform},
     10167  pages = {1871--1881},
     10168  journal = {Journal of the Optical Society of America A},
     10169  volume = {18},
     10170  author = {Larkin, K.G.}
     10171}
     10172@article{Salden1998,
     10173  year = {1998},
     10174  title = {Differential Integral Geometry of Linear Scale-Space},
     10175  pages = {5--27},
     10176  journal = {Journal of Mathematical Imaging and Vision},
     10177  volume = {9},
     10178  author = {Salden, A.H. and ter Haar Romeny, B.M. and Viergever, M.A. }
     10179}
     10180@misc{Lehar1994,
     10181  year = {1994},
     10182  title = {Harmonic Resonance in Visual Perception Suggests a Novel Form of Neural Communication},
     10183  note = {Rejected. Department of Cognitive and Neural Systems, Center for Adaptive Systems, Boston, U.S.A.},
     10184  author = {Lehar, S.}
     10185}
     10186@techreport{Luengo2003d,
     10187  month = {May},
     10188  year = {2003},
     10189  title = {Underestimation of the Radius in the Radon Transform for Circles and Spheres},
     10190  note = {Technical Report PH-2003-02},
     10191  institution = {Pattern Recognition Group, Delft University of Technology},
     10192  author = {Luengo Hendriks, C.L. and Ginkel, M. van and Vliet, L.J. van}
     10193}
     10194@inproceedings{Luengo2003c,
     10195  series = {Lecture Notes on Computer Science},
     10196  year = {2003},
     10197  title = {Discrete Morphology with Line Structuring Elements},
     10198  booktitle = {Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, {\footnotesize CAIP} 2003},
     10199  pages = {722-729},
     10200  editor = {Petkov, N. and Westenberg, M.A.},
     10201  volume = {2756},
     10202  address = {Berlin},
     10203  publisher = {Springer-Verlag},
     10204  author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
     10205}
     10206@article{Stark1996,
     10207  year = {1996},
     10208  title = {Electron radiation damage to protein crystals of bacteriorhodopsin at different temperatures},
     10209  pages = {75-70},
     10210  journal = {Ultramicroscopy},
     10211  volume = {63},
     10212  author = {Stark, H. and Zemlin, F. and Boettcher, C.}
     10213}
     10214@inproceedings{Luengo2003b,
     10215  series = {Lecture Notes on Computer Science},
     10216  year = {2003},
     10217  title = {The Generalized Radon Transform: Sampling and Memory Considerations},
     10218  booktitle = {Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, {\footnotesize CAIP} 2003},
     10219  pages = {681-688},
     10220  editor = {Petkov, N. and Westenberg, M.A.},
     10221  volume = {2756},
     10222  address = {Berlin},
     10223  publisher = {Springer-Verlag},
     10224  author = {Luengo Hendriks, C.L. and Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van}
     10225}
     10226@article{Cariolaro1998,
     10227  number = {12},
     10228  month = {December},
     10229  year = {1998},
     10230  title = {A Unified Framework for the Fractional {Fourier} Transform},
     10231  pages = {3206--3219},
     10232  journal = {IEEE Transactions on Signal Processing},
     10233  volume = {46},
     10234  author = {Cariolaro, G. and Erseghe, T. and Kraniauskas, P. and Laurenti, N.}
     10235}
     10236@article{Chen1977,
     10237  number = {9},
     10238  month = {September},
     10239  year = {1977},
     10240  title = {A Fast Computational Algorithm for the Discrete Cosine Transform},
     10241  pages = {1004--1009},
     10242  journal = {IEEE Transactions on Communications},
     10243  volume = {25},
     10244  annote = {key_fft},
     10245  author = {Chen, W.-H. and Harrison Smith, C. and Fralick, S.C.}
     10246}
     10247@article{Beckers1990,
     10248  year = {1990},
     10249  title = {The Probability of a Random Straight Line in Two and Three Dimensions},
     10250  pages = {233--240},
     10251  journal = {Pattern Recognition Letters},
     10252  volume = {11},
     10253  author = {Beckers, A.L.D. and Smeulders, A.W.M.}
     10254}
     10255@article{Aert2002a,
     10256  year = {2002},
     10257  title = {Optimal experimental design of {STEM} measurement of atom column positions},
     10258  pages = {273-289},
     10259  journal = {Ultramicroscopy},
     10260  volume = {90},
     10261  author = {Aert, S. van and Dekker, A.J. den and Dyck, D. van and Bos, A. van den}
     10262}
     10263@article{Mallat1989,
     10264  number = {7},
     10265  month = {July},
     10266  year = {1989},
     10267  title = {A Theory for Multiresolution Signal Decomposition: The Wavelet Representation},
     10268  pages = {674--693},
     10269  journal = {IEEE Transaction on Pattern Analysis and Machine Intelligence},
     10270  volume = {11},
     10271  author = {Mallat, S.G.}
     10272}
     10273@book{Ripley1988,
     10274  year = {1988},
     10275  title = {Statistical Inference for Spatial Processes},
     10276  publisher = {Cambridge University Press},
     10277  author = {Ripley, B.D.}
     10278}
     10279@book{Landau1959,
     10280  edition = {first},
     10281  year = {1959},
     10282  title = {Theory of Elasticity},
     10283  publisher = {Pergamon Press},
     10284  author = {Landau, L.D. and Lifshitz, E.M.}
     10285}
     10286@article{Oudejans2000,
     10287  year = {2000},
     10288  title = {Errors in judging 'offside' in football},
     10289  pages = {33},
     10290  journal = {Nature},
     10291  volume = {404},
     10292  author = {Oudejans, R.R.D. and Verheijen, R. and Bakker, F.C. and Gerrits, J.C. and Steinbrcker, M. and Beek, P.J.}
     10293}
     10294@article{Kubinova2001,
     10295  number = {6},
     10296  year = {2001},
     10297  title = {Confocal Microscopy and Stereology: Estimating Volume, Number, Surface Area and Length by Virtual Test Probes Applied to Three-Dimensional Images},
     10298  pages = {425--435},
     10299  journal = {Microscopy Research and Technique},
     10300  volume = {53},
     10301  author = {Kubinova, L. and Janacek, J.}
     10302}
     10303@article{Duynhoven2003,
     10304  number = {4},
     10305  year = {2003},
     10306  title = {Quantitative Assessment of Gas Cell Development during the Proofing of Dough by Magnetic Resonance Imaging and Image Analysis},
     10307  pages = {360-369},
     10308  journal = {Cereal Chemistry},
     10309  volume = {80},
     10310  author = {Duynhoven, P.M. van and Kempen, G.M.P. van and Sluis, R. van and Rieger, B. and Weegels, P. and Vliet, L.J. van and Nicolay, K.}
     10311}
     10312@misc{DMD,
     10313  title = {www.dlp.com},
     10314  author = {Texas Instruments Technology}
     10315}
     10316@article{Merlin1975,
     10317  month = {January},
     10318  year = {1975},
     10319  title = {A Parallel Mechanism for Detecting Curves in Pictures},
     10320  pages = {96--98},
     10321  journal = {IEEE Transactions on Computers},
     10322  volume = {24},
     10323  author = {Merlin, P.M. and Farber, D.J.}
     10324}
     10325@inproceedings{Meyer1999,
     10326  series = {Lecture Notes on Computer Science},
     10327  month = {September},
     10328  year = {1999},
     10329  title = {Multiscale Morphological Segmentations Based on Watershed, Flooding, and Eikonal PDE},
     10330  booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)},
     10331  pages = {351--362},
     10332  editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
     10333  volume = {1682},
     10334  address = {Berlin Heidelberg},
     10335  publisher = {Springer-Verlag},
     10336  author = {Meyer, Fernand and Maragos, Petros}
     10337}
     10338@article{Borgefors2003,
     10339  number = {1},
     10340  year = {2003},
     10341  title = {Weighted Digital Distance Transforms in Four Dimensions},
     10342  pages = {161--176},
     10343  journal = {Discrete Applied Mathematics},
     10344  volume = {125},
     10345  author = {Borgefors, G.}
     10346}
     10347@incollection{Proesmans1994,
     10348  year = {1994},
     10349  title = {Coupled geometry-driven diffusion equations for low-level vision},
     10350  booktitle = {Geometry-driven diffusion in computer vision},
     10351  pages = {191--228},
     10352  editor = {Ter Haar Romeny B.M.},
     10353  chapter = {9},
     10354  publisher = {Kluwer Academic Publishers},
     10355  author = {Proesmans, M. and Pauwels, P. and van Gool, L.}
     10356}
     10357@article{Smith1997,
     10358  number = {1},
     10359  year = {1997},
     10360  title = {SUSAN - A New Approach to Low Level Image Processing},
     10361  pages = {45--78},
     10362  journal = {International Journal of Computer Vision},
     10363  volume = {23},
     10364  author = {Smith, S.M., Brady J.M.}
     10365}
     10366@article{Catte1992,
     10367  number = {1},
     10368  month = {February},
     10369  year = {1992},
     10370  title = {Image selective smoothing and edge detection by nonlinear diffusion},
     10371  pages = {182--193},
     10372  journal = {SIAM J. Numer. Anal.},
     10373  volume = {29},
     10374  author = {{Catt\'e}, F. and Lions, P. and Morel, J. and Coll, T.}
     10375}
     10376@article{Radon1917,
     10377  year = {1917},
     10378  title = {{\"Uber} die {B}estimmung von {F}unktionen durch ihre {I}ntegralwerte {l\"angs} gewisser {M}annigfaltigkeiten},
     10379  pages = {262--277},
     10380  journal = {Berichte {S\"achsische} Akademie der Wissenschaften, Leipzig, Mathematisch-Physikalische Klasse},
     10381  volume = {69},
     10382  author = {Radon, J.}
     10383}
     10384@techreport{MuntheKaas1995,
     10385  year = {1995},
     10386  title = {Coordinate Free Numerics. Part 1: How to Avoid Index Wrestling in Tensor Computations},
     10387  institution = {Department of Informatics, University of Bergen, Norway},
     10388  author = {Munthe-Kaas, H. and Haveraaen, M.}
     10389}
     10390@inproceedings{Ginkel1999kort,
     10391  year = {1999},
     10392  title = {Curvature Estimation from Orientation Fields },
     10393  booktitle = {SCIA'99 },
     10394  pages = {545--551 },
     10395  editor = {Ersboll, B.K. and Johansen, P. },
     10396  publisher = {Pattern Recognition Society of Denmark},
     10397  author = {Ginkel, M. van and Weijer, J. van de and Verbeek, P.W. and Vliet, L.J. van }
     10398}
     10399@article{Squire1999,
     10400  year = {1999},
     10401  title = {Three Dimensional Image Restoration in Fluorescence Lifetime Imaging Microscopy},
     10402  pages = {36--49},
     10403  journal = {Journal of Microscopy},
     10404  volume = {193},
     10405  author = {Squire, A. and Bastiaens, P.I.H.}
     10406}
     10407@article{Larkin2005,
     10408  number = {20},
     10409  year = {2005},
     10410  title = {Uniform estimation of orientation using local and nonlocal {2-D} energy operators},
     10411  pages = {8097-8121},
     10412  journal = {Optics Express},
     10413  volume = {13},
     10414  author = {Larkin, K.G.}
     10415}
     10416@article{Babaud1986,
     10417  number = {1},
     10418  month = {January},
     10419  year = {1986},
     10420  title = {Uniqueness of the {G}aussian Kernel for Scale-Space Filtering},
     10421  pages = {26--33},
     10422  journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
     10423  volume = {8},
     10424  author = {Babaud, J. and Witkin, A.P. and Baudin, M. and Duda, R.O.}
     10425}
     10426@article{Grossman1984,
     10427  number = {4},
     10428  month = {July},
     10429  year = {1984},
     10430  title = {Decomposition of {Hardy} Functions into Square Integrable Wavelets of Constant Shape},
     10431  pages = {723--736},
     10432  journal = {{SIAM} Journal on Mathematical Analysis},
     10433  volume = {15},
     10434  author = {Grossman, A. and Morlet, J.}
     10435}
     10436@article{OlivoMarin2002,
     10437  number = {9},
     10438  month = {September},
     10439  year = {2002},
     10440  title = {Extraction of Spots in Biological Images using Multiscale Products},
     10441  pages = {1989--1996},
     10442  journal = {Pattern Recognition},
     10443  volume = {35},
     10444  author = {Olivo-Marin, J.-C.}
     10445}
     10446@article{Larkin2001,
     10447  number = {8},
     10448  month = {August},
     10449  year = {2001},
     10450  title = {Natural Demodulation of Two-Dimensional Fringe Patterns. {I}. General Background of the Spiral Phase Quadrature Transform},
     10451  pages = {1862--1870},
     10452  journal = {Journal of the Optical Society of America A},
     10453  volume = {18},
     10454  author = {Larkin, K.G. and Bone, D.J. and Oldfield, M.A.}
     10455}
     10456@article{Nakajima2003,
     10457  year = {2003},
     10458  title = {Physics-based flow estimation of fluids},
     10459  pages = {1203-1212},
     10460  journal = {Pattern Recognition},
     10461  volume = {36},
     10462  author = {Nakajima, Y. and Inomata, H. and Nogawa, H. and Sato, Y. and Tamura, S. and Okazaki, K. and Torii, S.}
     10463}
     10464@article{Garini2005,
     10465  number = {1},
     10466  year = {2005},
     10467  title = {From micro to nano: recent advances in high-resolution microscopy},
     10468  pages = {3-12},
     10469  journal = {Current Opinion in Biotechnology},
     10470  volume = {16},
     10471  author = {Garini, Y. and Vermolen, B.J. and Young, I.T.}
     10472}
     10473@article{Duhamel1990,
     10474  year = {1990},
     10475  title = {Fast {F}ourier transforms: a tutorial review and a state of the art},
     10476  pages = {259--299},
     10477  journal = {Signal Processing},
     10478  volume = {19},
     10479  annote = {key_fft},
     10480  author = {Duhamel. P. and Vetterli, M.}
     10481}
     10482@article{Martinez2004,
     10483  year = {2004},
     10484  title = {Design of {Wien} filters with high resolution},
     10485  pages = {105-114},
     10486  journal = {Ultramicroscopy},
     10487  volume = {100},
     10488  author = {Martinez, G. and Tsuno, K.}
     10489}
     10490@inproceedings{Tanaka1986,
     10491  year = {1986},
     10492  title = {A Rotation Method for Raster Image Using Skew Transformation},
     10493  booktitle = {CVPR'86, IEEE Conference on Computer Vision and Pattern Recognition},
     10494  pages = {272--277},
     10495  author = {Tanaka, A. and Kameyama, M. and Kazama, S. and Watanabe, O.}
     10496}
     10497@article{Nyquist1928,
     10498  year = {1928},
     10499  title = {Certain Topics in Telegraph Transmission Theory},
     10500  pages = {617--644},
     10501  note = {[reprinted in: Proceedings of the IEEE, vol. 90, no. 2, pp. 280-305, February 2002]},
     10502  journal = {Transactions of the AIEE},
     10503  author = {Nyquist, H.}
     10504}
     10505@article{Thurnhofer1996,
     10506  number = {6},
     10507  month = {June},
     10508  year = {1996},
     10509  title = {A General Framework for Quadratic {V}olterra Filter for Edge Enhancement},
     10510  pages = {950--963},
     10511  journal = {IEEE Transactions on Image Processing},
     10512  volume = {5},
     10513  author = {Thurnhofer, S. and Mitra, S.K.}
     10514}
     10515@article{Kybic2002,
     10516  number = {8},
     10517  year = {2002},
     10518  title = {Generalized sampling: A variational approach - Part I: Theory},
     10519  pages = {1965--1976},
     10520  journal = {IEEE Transactions on Signal Processing},
     10521  volume = {50},
     10522  author = {Kybic, J. and Blu, T. and Unser, M.}
     10523}
     10524@article{Maybank1986,
     10525  year = {1986},
     10526  title = {Optical Flow and the Taylor Expansion},
     10527  pages = {243-246},
     10528  journal = {Pattern Recognition Letters},
     10529  volume = {4},
     10530  author = {Maybank, S.J.}
     10531}
     10532@inproceedings{Breen1996,
     10533  year = {1996},
     10534  title = {An Attribute-Based Approach to Mathematical Morphology},
     10535  booktitle = {Mathematical Morphology and its Applications to Image and Signal Processing},
     10536  pages = {41-48},
     10537  editor = {Maragos, P. and Schafer, R. W. and Akmal Butt, M.},
     10538  address = {Boston},
     10539  publisher = {Kluwer Academic Publishers},
     10540  author = {Breen, E. J. and Jones, R.}
     10541}
     10542@inproceedings{Ronse1986,
     10543  year = {1986},
     10544  title = {Erosion of Narrow Image Features by Combination of Local Low Rank and Max Filters},
     10545  booktitle = {Proceedings of the Second IEE International Conference on Image Processing and its Applications},
     10546  pages = {77-81},
     10547  address = {London},
     10548  author = {Ronse, C.}
     10549}
     10550@article{Khaneja1998,
     10551  number = {11},
     10552  year = {1998},
     10553  title = {Dynamic Programming Generation of Curves on Brain Surfaces},
     10554  pages = {1260--1265},
     10555  journal = {IEEE Transaction on Pattern Analysis and Machine Intelligence},
     10556  volume = {20},
     10557  author = {Khaneja, N. and Miller, M. I. and Grenander, U.}
     10558}
     10559@article{Nogales2001,
     10560  year = {2--1},
     10561  title = {Molecular Machines: Putting the Pieces Together},
     10562  pages = {F1-F10},
     10563  journal = {Journal of Cell Biology},
     10564  volume = {152},
     10565  author = {Nogales, E. and Grigorieff, N.}
     10566}
     10567@article{Campbell2001,
     10568  number = {6},
     10569  year = {2001},
     10570  title = {Spontaneous Assembly of Magnetic {LEGO} Bricks},
     10571  pages = {321--323},
     10572  journal = {The Chemical Educator},
     10573  volume = {6},
     10574  author = {Campbell, D.J. and Freidinger, E.R. and Querns, M.K.}
     10575}
     10576@article{Pike1995,
     10577  number = {3},
     10578  year = {1995},
     10579  title = {Plan 9 from {Bell} Labs},
     10580  pages = {221--254},
     10581  journal = {Computing Systems},
     10582  volume = {8},
     10583  author = {Pike, R. and Presotto, D. and Dorward, S. and Flandrena, B. and Thompson, K. and Trickey, H. and Winterbottom, P.}
     10584}
     10585@article{Jiang2003,
     10586  year = {2003},
     10587  title = {Applications of a bilateral denoising filter in biological electron microscopy},
     10588  pages = {114-122},
     10589  journal = {Journal of Structural Biology},
     10590  volume = {144},
     10591  author = {Jiang, W. and Baker, M.L. and Wu, Q. and Bajaj, C. and Chiu, W.}
     10592}
     10593@misc{Koenderink1988,
     10594  year = {1988},
     10595  title = {Image Structure},
     10596  howpublished = {NATO ASI Series, vol. F39, Mathematics and Computer Science in Medical Imaging, Springer-Verlag},
     10597  author = {Koenderink, J.J.}
     10598}
     10599@article{Back1997,
     10600  number = {4},
     10601  month = {Aug},
     10602  year = {1997},
     10603  title = {A first application of independent component analysis to extracting structure from stock returns},
     10604  pages = {473-484},
     10605  journal = {International Journal of Neural Systems},
     10606  volume = {8},
     10607  author = {Back, A. D. and Weigend, A. S.}
     10608}
     10609@article{Koenderink1984,
     10610  year = {1984},
     10611  title = {The Structure of Images},
     10612  pages = {363--370},
     10613  journal = {Biological Cybernetics},
     10614  volume = {50},
     10615  author = {Koenderink, J.J.}
     10616}
     10617@article{Koenderink1987,
     10618  year = {1987},
     10619  title = {Representation of Local Geometry in the Visual System},
     10620  pages = {367--375},
     10621  journal = {Biological Cybernetics},
     10622  volume = {55},
     10623  author = {Koenderink, J.J. and Doorn, A.J. van}
     10624}
     10625@article{Jarvis1976,
     10626  month = {August},
     10627  year = {1976},
     10628  title = {A New Technique for Displaying Continuous Tone Images on a Bilevel Display},
     10629  pages = {891--898},
     10630  journal = {IEEE Transactions on Communications},
     10631  author = {Jarvis, J.F. and Roberts, C.S.}
     10632}
     10633@article{Saito1994,
     10634  number = {11},
     10635  year = {1994},
     10636  title = {New algorithms for euclidean distance transformation of an n-dimensional digitized picture with applications},
     10637  pages = {1551-1565},
     10638  journal = {Pattern Recognition},
     10639  volume = {27},
     10640  author = {Saito,T. and Toriwaki, J.}
     10641}
     10642@article{Bonneau2005,
     10643  number = {9},
     10644  year = {2005},
     10645  title = {Single Quantum Dot Tracking Based on Perceptual Grouping Using Minimal Paths in a Spatiotemporal Volume},
     10646  pages = {1384-1395},
     10647  journal = {IEEE Transactions on Image Processing},
     10648  volume = {14},
     10649  author = {Bonneau, S. and Dahan, M. and Cohnen, L.D.}
     10650}
     10651@inproceedings{Boomgaard2002a,
     10652  month = {1 June},
     10653  year = {2002},
     10654  title = {Robust Estimation of Orientation for Texture Analysis},
     10655  booktitle = {Texture 2002, The 2nd international workshop on texture analysis and synthesis},
     10656  pages = {135-138},
     10657  address = {Copenhagen, Denmark},
     10658  author = {Boomgaard, R. van den and Weijer, J. van de}
     10659}
     10660@article{Koenderink1988a,
     10661  number = {7},
     10662  month = {July},
     10663  year = {1988},
     10664  title = {Two-dimensional Curvature Operators},
     10665  pages = {1136--1141},
     10666  journal = {Journal of the Optical Society of America A},
     10667  volume = {5},
     10668  author = {Koenderink, J.J. and Richards, W.}
     10669}
     10670@article{Neher2004,
     10671  year = {2004},
     10672  title = {Applying Spectral Fingerprinting to the Analysis of {FRET} Images},
     10673  pages = {185-195},
     10674  journal = {Microscopy Research and Technique},
     10675  volume = {64},
     10676  author = {Neher, R.A. and Neher, E.}
     10677}
     10678@article{Wouters2001,
     10679  year = {2001},
     10680  title = {Imaging biochemistry inside cells},
     10681  pages = {203-211},
     10682  journal = {Trends in Cell Biology},
     10683  volume = {11},
     10684  author = {Wouters, F.S. and Verveer, P.J. and Bastiaens, P.I.H.}
     10685}
     10686@article{Einstein1905,
     10687  year = {1905},
     10688  title = {{\"Uber} die von der molekularkinetischen {T}heorie der {W\"a}rme geforderte {B}ewegung von in ruhenden {Fl\"u}ssigkeiten suspendierten {T}eilchen},
     10689  pages = {549--560},
     10690  journal = {Annalen der Physik},
     10691  volume = {17},
     10692  author = {Einstein, A.}
     10693}
     10694@article{Wimberly2000,
     10695  year = {2005},
     10696  title = {Structure of the {30S} ribosomal subunit},
     10697  pages = {327-339},
     10698  journal = {Nature},
     10699  volume = {407},
     10700  author = {Wimberly, B.T. and Brodersen, D.E. and Clemons, W.M. Jr. and Morgan-Warren, R.J. and Carter, A.P. and Vonrhein, C. and Hartsch, T. and Ramakrishnan, V.}
     10701}
     10702@article{Weickert1998,
     10703  number = {3},
     10704  year = {1998},
     10705  title = {Efficient and reliable schemes for nonlinear diffusion filtering},
     10706  pages = {398--410},
     10707  journal = {IEEE Transactions on Image Processing},
     10708  volume = {7},
     10709  author = {Weickert, J. and ter Haar Romeny, B.M. and Viergever, M.A. }
     10710}
     10711@article{Lindeberg1990,
     10712  number = {3},
     10713  year = {1990},
     10714  title = {Scale-Space for Discrete Signals},
     10715  pages = {234--254},
     10716  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     10717  volume = {12},
     10718  author = {Lindeberg, T.}
     10719}
     10720@article{Nason2000,
     10721  year = {2000},
     10722  title = {Wavelet Processes and Adaptive Estimation of the Evolutionary Wavelet Spectrum},
     10723  pages = {271--292},
     10724  journal = {Journal of the Royal Statistical Society B},
     10725  volume = {62},
     10726  author = {Nason, G.P. and Sachs, R. von and Kroisandt, G.}
     10727}
     10728@article{Gibbons1975,
     10729  number = {11},
     10730  year = {1975},
     10731  title = {Inelastic electron scattering spectrometer},
     10732  pages = {1546-1554},
     10733  journal = {Review of Scientific Intstruments},
     10734  volume = {46},
     10735  author = {Gibbons, P.C. and Ritsko, J.J. and Schnatterly, S.E.}
     10736}
     10737@article{Bouma2005,
     10738  number = {9},
     10739  year = {2005},
     10740  title = {Correction for the Dislocation of Curved Surfaces Caused by the {PSF} in {2D} and {3D} {CT} Images},
     10741  pages = {1501-1507},
     10742  journal = {Ultramicroscopy},
     10743  volume = {27},
     10744  author = {Bouma, H. and Vilanova, A. and Vliet, L.J. van and Gerritsen, F.A.}
     10745}
     10746@book{Lindeberg1994,
     10747  year = {1994},
     10748  title = {Scale-Space Theory in Computer Vision},
     10749  publisher = {Kluwer},
     10750  author = {Lindeberg, T.}
     10751}
     10752@article{Ober2003,
     10753  number = {10},
     10754  year = {2003},
     10755  title = {Calculations of the Fisher information matrix for multidimensional data sets},
     10756  pages = {2679-2691},
     10757  journal = {IEEE Transactions on Signal Processing},
     10758  volume = {51},
     10759  author = {Ober, R.J. and Lin, Z. and Zou, Q.}
     10760}
     10761@article{Mattfeldt2000,
     10762  month = {May},
     10763  year = {2000},
     10764  title = {Classification of Spatial Textures in Benign and Cancerous Glandular Tissues by Stereology and Stochastic Geometry using Artificial Neural Networks},
     10765  pages = {143--158},
     10766  journal = {Journal of Microscopy},
     10767  volume = {198, Pt 2},
     10768  author = {Mattfeldt, T. and Gottfried, H.-W. and Schmidt, V. and Kestler, H.A.}
     10769}
     10770@article{Ober2004,
     10771  number = {2},
     10772  year = {2004},
     10773  title = {Localization Accuracy in Single-Molecule Microscopy},
     10774  pages = {1185-1200},
     10775  journal = {Biophysical Journal},
     10776  volume = {86},
     10777  author = {Ober, R.J. and Ram, S. and Ward, S.E.}
     10778}
     10779@article{Hummel1987,
     10780  year = {1987},
     10781  title = {Deblurring Gaussian Blur},
     10782  pages = {66--80},
     10783  journal = {Computer Vision, Graphics, and Image Processing},
     10784  volume = {38},
     10785  author = {Hummel, R.A. and Kimia, B. and Zucker, S.W.}
     10786}
     10787@article{Hummel1989,
     10788  number = {12},
     10789  month = {December},
     10790  year = {1989},
     10791  title = {Reconstructions from Zero Crossings in Scale Space},
     10792  pages = {2111--2130},
     10793  journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
     10794  volume = {37},
     10795  author = {Hummel, R. and Moniot, R.}
     10796}
     10797@article{Pons1999,
     10798  year = {1999},
     10799  title = {Particle morphology: from cisulatisation to measurement},
     10800  pages = {44--57},
     10801  journal = {Powder Technology},
     10802  volume = {103},
     10803  author = {Pons, M.N. and Vivier, H. and Belaroui, K. and Bernard-Michel, B. and Cordier, F. and Oulahana, D. and Dodds, J.A. }
     10804}
     10805@inproceedings{Holmes1999,
     10806  year = {1999},
     10807  title = {Developing a Measure of Similarity between Pixel Signatures},
     10808  booktitle = {10th British Machine Vision Conference},
     10809  pages = {614--623},
     10810  editor = {Pridmore, T. and Elliman, D.},
     10811  volume = {2},
     10812  author = {Holmes, A. and Taylor, C.}
     10813}
     10814@article{Keys1981,
     10815  number = {6},
     10816  year = {1981},
     10817  title = {Cubic Convolution Interpolation for Digital Image Processing},
     10818  pages = {1153-1160},
     10819  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
     10820  volume = {29},
     10821  author = {Keys, R. G.}
     10822}
     10823@inproceedings{Hummel1986,
     10824  year = {1986},
     10825  title = {Representation Based on Zero-crossings in Scale-Space},
     10826  booktitle = {IEEE Proceedings of the International Conference on Computer Vision and Pattern Recognition},
     10827  pages = {204--209},
     10828  author = {Hummel, R.A.}
     10829}
     10830@article{Nielsen1997,
     10831  number = {4},
     10832  year = {1997},
     10833  title = {Regularization, scale-space and edge-detection filters},
     10834  pages = {291--307},
     10835  journal = {Journal of Mathematical Imaging and Vision},
     10836  volume = {7},
     10837  author = {Nielsen, N. and Florack, L. and Deriche, R.}
     10838}
     10839@inbook{Adam1968,
     10840  year = {1968},
     10841  title = {Structural Chemistry and Molecular Biology},
     10842  pages = {198-215},
     10843  editor = {Rich, A. and Davidson, N. },
     10844  address = {San Francisco, USA},
     10845  chapter = {Reduction of Dimensionality in Biological Diffusion Processes},
     10846  publisher = {Freeman},
     10847  author = {Adam, G. and {Delbr\"uck}, M.}
     10848}
     10849@article{Frontali1979,
     10850  number = {6},
     10851  year = {1979},
     10852  title = {An absolute method for the determination of the persistence length of native {DNA} from electron micrographs},
     10853  pages = {1353-1373},
     10854  journal = {Biopolymers},
     10855  volume = {18},
     10856  author = {Frontali, C. and Dore, E. and Ferrauto, A. and Gratton, E. and Bettini, A. and Pozzan, M.R. and Valdevit, E.}
     10857}
     10858@inbook{Thomas1963,
     10859  year = {1963},
     10860  title = {Applications of Digital Computers},
     10861  chapter = {Using Computers to Solve Problems in Physics},
     10862  publisher = {Ginn and Co., Boston},
     10863  author = {Thomas, L.H.}
     10864}
     10865@article{Yang2005,
     10866  year = {2005},
     10867  title = {Unified {3-D} structure and projection orientation refinement using {quasi-Newton} algorithm},
     10868  pages = {53-64},
     10869  journal = {Journal of Structural Biology},
     10870  volume = {149},
     10871  author = {Yang, C. and Ng, E.G. and Penczek, P.A.}
     10872}
     10873@article{Almeida1997,
     10874  year = {1997},
     10875  title = {Anisotropic Textures with Arbitrary Orientation},
     10876  pages = {241--251},
     10877  journal = {Journal of Mathematical Imaging and Vision},
     10878  volume = {7},
     10879  author = {Almeida, M.P.}
     10880}
     10881@mastersthesis{Okker2003,
     10882  month = {January},
     10883  year = {2003},
     10884  title = {Contour continuation using space variant mathematical morphology},
     10885  school = {Delft University of Technology},
     10886  author = {Okker, B.H.}
     10887}
     10888@article{Kempen2000a,
     10889  number = {4},
     10890  year = {2000},
     10891  title = {Mean and Variance of Ratio Estimators Used in Fluorescence Ratio Imaging},
     10892  pages = {300-305},
     10893  journal = {Cytometry},
     10894  volume = {39},
     10895  author = {Kempen, G.M.P. van and Vliet, L.J. van}
     10896}
     10897@article{Almeida1994,
     10898  number = {11},
     10899  month = {November},
     10900  year = {1994},
     10901  title = {The Fractional {F}ourier Transform and Time-Frequency Representations},
     10902  pages = {3084--3091},
     10903  journal = {IEEE Transactions on Signal Processing},
     10904  volume = {42},
     10905  author = {Almeida, L.B.}
     10906}
     10907@article{Malandain1998,
     10908  number = {5},
     10909  year = {1998},
     10910  title = {Euclidean Skeletons},
     10911  pages = {317--327},
     10912  journal = {Image and Vision Computing},
     10913  volume = {16},
     10914  author = {Malandain, G. and {Fern\'andez-Vidal}, S.}
     10915}
     10916@article{Hekrdla1986,
     10917  number = {4},
     10918  month = {August},
     10919  year = {1986},
     10920  title = {Index Transforms of Multidimensional Cyclic Convolutions and Discrete {Fourier} Transforms},
     10921  pages = {996--996},
     10922  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
     10923  volume = {34},
     10924  annote = {key_fft},
     10925  author = {Hekrdla, J.}
     10926}
     10927@article{Kues2001,
     10928  number = {6},
     10929  year = {2001},
     10930  title = {Visualization and Tracking of Single Protein Molecules in the Cell Nucleus},
     10931  pages = {2954-2967},
     10932  journal = {Biophysical Journal},
     10933  volume = {80},
     10934  author = {Kues, T. and Peters, R. and Kubitscheck, U.}
     10935}
     10936@article{Heilemann2002,
     10937  number = {14},
     10938  year = {2002},
     10939  title = {High-resolution colocalization of single dye molecules by fluorescence lifetime imaging microscopy},
     10940  pages = {3511-3517},
     10941  journal = {Analytical Chemistry},
     10942  volume = {74},
     10943  author = {Heilemann, M. and Herten, D.P. and Heintzmann, R. and Cremer, C. and {M\"uller}, C. and Tinnefeld, P. and Weston, K.D. and Wolfrum, J. and Sauer, M.}
     10944}
     10945@article{Kehtarnavaz1988,
     10946  number = {5},
     10947  month = {September},
     10948  year = {1988},
     10949  title = {A 3-D contour segmentation scheme based on curvature and torsion},
     10950  pages = {707--713},
     10951  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     10952  volume = {10},
     10953  author = {Kehtarnavaz, N. and Figueiredo, R.J.P. de}
     10954}
     10955@article{Gil1993,
     10956  number = {5},
     10957  month = {May},
     10958  year = {1993},
     10959  title = {Computing {2-D} Min, Median, and Max Filters},
     10960  pages = {504--507},
     10961  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     10962  volume = {15},
     10963  author = {Gil, J. and Werman, M.}
     10964}
     10965@article{Engel1981,
     10966  number = {1},
     10967  year = {1981},
     10968  title = {Shapes, domain organizations and flexibility of laminin and fibronectin, two multifunctional proteins of the extracellular matrix},
     10969  pages = {97-120},
     10970  journal = {Journal of Molecular Biology},
     10971  volume = {150},
     10972  author = {Engel, J. and Odermatt, E. and Engel, A. and Madri, J.A. and Furthmayr, H. and Timpl, H.R.}
     10973}
     10974@article{Ruiz2001,
     10975  year = {2001},
     10976  title = {The first three-dimensional structure of phosphofructokinase from Saccharomyces cerevisiae determined by electron microscopy of single particles},
     10977  pages = {167-180},
     10978  journal = {Journal of Structural Biology},
     10979  volume = {136},
     10980  author = {Ruiz, T. and {Koppenschl\"ager}, G. and Radermacher, M.}
     10981}
     10982@techreport{Nordberg1992a,
     10983  year = {1992},
     10984  title = {Signal Representation and Signal Processing using Operators},
     10985  note = {LiTH-ISY-I-1387},
     10986  address = {{Link\"oping}, Sweden},
     10987  institution = {{Link\"oping} University},
     10988  author = {Nordberg, K.}
     10989}
     10990@article{Faydi2001,
     10991  year = {2001},
     10992  title = {Experimental Study and Modeling of the Ice Crystal Morphology of Model Standard Ice Cream. Part {I}: Direct Characterization Method and Experimental Data},
     10993  pages = {283--291},
     10994  journal = {Journal of Food Engineering},
     10995  volume = {48},
     10996  author = {Faydi, E. and Andrieu, J. and Laurent, P.}
     10997}
     10998@article{Griffin1997,
     10999  number = {5},
     11000  year = {1997},
     11001  title = {Scale-Imprecision Space},
     11002  pages = {369--398},
     11003  journal = {Image and Vision Computing},
     11004  volume = {15},
     11005  author = {Griffin, L.D.}
     11006}
     11007@phdthesis{Cavallo2002,
     11008  month = {June},
     11009  year = {2002},
     11010  title = {Four Dimensional Particle Tracking in Biological Dynamic Processes},
     11011  address = {Heidelberg, Germany},
     11012  school = {Ruprechts-Karls-{Universit\"at}},
     11013  author = {Cavallo, A.}
     11014}
     11015@phdthesis{Leeuw1997,
     11016  year = {1997},
     11017  title = {Presentation and Exploration of Flow Data},
     11018  address = {The Netherlands},
     11019  school = {Delft University of Technology},
     11020  author = {Leeuw, W. de}
     11021}
     11022@article{Unser1993a,
     11023  number = {2},
     11024  month = {February},
     11025  year = {1993},
     11026  title = {{B}-Spline Signal Processing: Part {II} - Efficient Design and Applications},
     11027  pages = {834--848},
     11028  journal = {IEEE Transactions on Signal Processing},
     11029  volume = {41},
     11030  author = {Unser, Michael and Aldroubi, Akram and Eden, Murray}
     11031}
     11032@article{Deschamps2001,
     11033  number = {4},
     11034  year = {2001},
     11035  title = {Fast extraction of minimal paths in 3D images and applications to virtual endoscopy},
     11036  pages = {281-299},
     11037  journal = {Medical Image Analysis},
     11038  volume = {5},
     11039  author = {Deschamps, T. and Cohen, L.D.}
     11040}
     11041@article{Torok1998,
     11042  number = {4-6},
     11043  year = {1998},
     11044  title = {On the general properties of polarised light conventional and confocal microscopes},
     11045  pages = {300-315},
     11046  journal = {Optics Communications},
     11047  volume = {148},
     11048  author = {{T\"or\"ok}, P. and Higdon, P.D. and Wilson, T.}
     11049}
     11050@article{Rose2004,
     11051  year = {2004},
     11052  title = {Outline of an ultracorrector compensating for all primary chromatic and geometrical aberrations of charged-particle lenses},
     11053  pages = {12-27},
     11054  journal = {Nuclear Instruments and Methods in Physics Research A},
     11055  volume = {519},
     11056  author = {Rose, H.}
     11057}
     11058@article{Jain1979,
     11059  number = {4},
     11060  month = {October},
     11061  year = {1979},
     11062  title = {A Sinusoidal Family of Unitary Transforms},
     11063  pages = {356--365},
     11064  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11065  volume = {1},
     11066  annote = {key_fft},
     11067  author = {Jain, A.K.}
     11068}
     11069@article{Weickert1999a,
     11070  number = {3},
     11071  year = {1999},
     11072  title = {Linear scale-space has first been proposed in {Japan}},
     11073  pages = {237--252},
     11074  journal = {Journal of Mathematical Imaging and Vision},
     11075  volume = {10},
     11076  author = {Weickert, J. and Ishikawa, S. and Imiya, A.}
     11077}
     11078@article{Doel1998,
     11079  number = {3},
     11080  year = {1998},
     11081  title = {Quantitative evaluation of light microscopes based on image processing techniques},
     11082  pages = {138-149},
     11083  journal = {Bioimaging},
     11084  volume = {6},
     11085  author = {Doel, L.R. van den and Vliet, L.J. van}
     11086}
     11087@article{Mallat1992,
     11088  number = {7},
     11089  month = {June},
     11090  year = {1992},
     11091  title = {Characterization of Signals from Multiscale Edges},
     11092  pages = {710--732},
     11093  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11094  volume = {14},
     11095  author = {Mallat, S.G. and Zhong, S.}
     11096}
     11097@inproceedings{Bulow1997,
     11098  month = {June 9-11},
     11099  year = {1997},
     11100  title = {Algebraically Extended Representations of Multi-Dimensional Signals},
     11101  booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)},
     11102  pages = {559--566},
     11103  volume = {I},
     11104  author = {{B\"ulow}, T. and Sommer, G.}
     11105}
     11106@article{Bailey1990,
     11107  year = {1990},
     11108  title = {{FFT}s in External or Hierarchical Memory},
     11109  pages = {23--35},
     11110  journal = {The Journal of Supercomputing},
     11111  volume = {4},
     11112  annote = {key_fft},
     11113  author = {Bailey, D.H.}
     11114}
     11115@article{Boddeke1997,
     11116  number = {3},
     11117  year = {1997},
     11118  title = {Calibration of the automated z-axis of a microscope using focus functions},
     11119  pages = {270-274},
     11120  journal = {Journal of Microscopy},
     11121  volume = {186},
     11122  author = {Boddeke, F.R. and Vliet, L.J. van and Young, I.T.}
     11123}
     11124@inproceedings{Bulow1998,
     11125  month = {August 17--20},
     11126  title = {Quaternionic {G}abor Filters for Local Structure Classification},
     11127  booktitle = {14th International Conference on Pattern Recognition (Brisbane, Australia)},
     11128  pages = {808--810},
     11129  author = {{B\"ulow}, T. and Sommer, G.}
     11130}
     11131@article{Boddeke1994,
     11132  number = {4},
     11133  year = {1994},
     11134  title = {Autofocusing in microscopy based on the {OTF} and sampling},
     11135  pages = {193-203},
     11136  journal = {Bioimaging},
     11137  volume = {2},
     11138  author = {Boddeke, F.R. and Vliet, L.J. van and Netten, H. and Young, I.T.}
     11139}
     11140@inproceedings{Breton1996,
     11141  year = {1996},
     11142  title = {Shadows and Shading Flow Fields},
     11143  booktitle = {Proc. IEEE Conference on Computer Vision and Pattern Recognition - CVPR'96},
     11144  pages = {782--789},
     11145  address = {San Francisco, USA},
     11146  author = {Breton, P. and Zucker, S.W.}
     11147}
     11148@article{Nikolaidis1998,
     11149  number = {12},
     11150  month = {December},
     11151  year = {1998},
     11152  title = {Nonlinear Processing and Analysis of Angular Signals},
     11153  pages = {3181--3194},
     11154  journal = {IEEE Transactions on Signal Processing},
     11155  volume = {46},
     11156  author = {Nikolaidis, N. and Pitas, I.}
     11157}
     11158@article{Monga1992,
     11159  number = {6},
     11160  year = {1992},
     11161  title = {From voxel to intrinsic surface features},
     11162  pages = {403--417},
     11163  journal = {Image and Vision Computing},
     11164  volume = {10},
     11165  author = {Monga, O. and Ayache,N. and Sander,P.T.}
     11166}
     11167@article{Monga1995,
     11168  number = {2},
     11169  year = {1995},
     11170  title = {Using Partial Derivatives of 3D Images to Extract Typical Surface Features},
     11171  pages = {171--189},
     11172  journal = {Computer Vision and Image Understanding},
     11173  volume = {61},
     11174  author = {Monga, O. and Benayoun, S.}
     11175}
     11176@article{Efros1997,
     11177  number = {6},
     11178  year = {1997},
     11179  title = {Random Telegraph Signal in the Photoluminescence Intensity of a Single Quantum Dot},
     11180  pages = {1110-1113},
     11181  journal = {Physical Review Letters},
     11182  volume = {78},
     11183  author = {Efros, A.L. and Rosen, M.}
     11184}
     11185@article{Illingworth1988,
     11186  number = {1},
     11187  year = {1988},
     11188  title = {A Survey of the {H}ough Transform},
     11189  pages = {87--116},
     11190  journal = {Computer Vision, Graphics and Image Processing},
     11191  volume = {44},
     11192  annote = {key_radon},
     11193  author = {Illingworth, J. and Kittler, J.}
     11194}
     11195@inproceedings{Dorst1993,
     11196  year = {1993},
     11197  title = {An Analytical Theory of Mathematical Morphology},
     11198  booktitle = {Mathematical Morphology and its Applications to Signal Processing},
     11199  pages = {245--250},
     11200  editor = {Serra, J. and Salembier, P.},
     11201  author = {Dorst, L. and Boomgaard, R. van den},
     11202  organization = {Universitat Politecnica de Catalunya (Barcelona, Spain)}
     11203}
     11204@article{Zwier2004,
     11205  number = {1},
     11206  year = {2004},
     11207  title = {Image calibration in fluorescence microscopy},
     11208  pages = {15-24},
     11209  journal = {Journal of Microscopy},
     11210  volume = {216},
     11211  author = {Zwier, J.M. and Rooij, G.J. van and Hofstraat, J.W. and Brakenhoff, G.J.}
     11212}
     11213@article{Heun2001,
     11214  number = {5549},
     11215  month = {December},
     11216  year = {2001},
     11217  title = {Chromoson Dynamics in the Yeast Interphase Nucleus},
     11218  pages = {2181-2187},
     11219  journal = {Science},
     11220  volume = {294},
     11221  author = {Heun, P. and Laroche, T. and Shimada, K. and Furrer, P. and Gasser, S.M.}
     11222}
     11223@inbook{Dorst1995,
     11224  year = {1995},
     11225  title = {World Scientific},
     11226  pages = {13--22},
     11227  editor = {Dori, D. and Bruckstein, A.},
     11228  chapter = {Orientation-based Representations for Mathematical Morphology},
     11229  author = {Dorst, L. and Boomgaard, R. van den}
     11230}
     11231@misc{Dorst1999,
     11232  month = {December},
     11233  year = {1999},
     11234  title = {{GABLE}: A Matlab Tutorial for Geometric Algebra},
     11235  author = {Dorst, L. and Mann, S. and Bouma, T.}
     11236}
     11237@article{Dorst1994,
     11238  year = {1994},
     11239  title = {Morphological Signal Processing and the Slope Transform},
     11240  pages = {79--98},
     11241  journal = {Signal Processing},
     11242  volume = {38},
     11243  author = {Dorst, L. and Boomgaard, R. van den}
     11244}
     11245@article{Lichte1996a,
     11246  year = {1996},
     11247  title = {Artefacts in electron holography},
     11248  pages = {67-77},
     11249  journal = {Ultramicroscopy},
     11250  volume = {64},
     11251  author = {Lichte, H. and Geiger, D. and Harscher, A. and Heindl, E. and Lehman, M. and Malamidis, D. and Orchowski, A. and Rau, W.-D.}
     11252}
     11253@article{Thust1996,
     11254  year = {1996},
     11255  title = {Numerical correction of lens aberrations in phase-retrieval {HRTEM}},
     11256  pages = {249-264},
     11257  journal = {Ultramicroscopy},
     11258  volume = {64},
     11259  author = {Thust, A. and Overwijk, M.H.F. and Coene, W.M.J. and Lentzen, M.}
     11260}
     11261@article{Katsevich1997,
     11262  number = {4},
     11263  month = {August},
     11264  year = {1997},
     11265  title = {Local Tomography for the Generalized Radon Transform},
     11266  pages = {1128--1162},
     11267  journal = {SIAM J. Appl. Math.},
     11268  volume = {57},
     11269  annote = {key_radon},
     11270  author = {Katsevich, A.I.}
     11271}
     11272@article{Lopez1999,
     11273  number = {4},
     11274  month = {April},
     11275  year = {1999},
     11276  title = {Evaluation of Methods for Ridge and Valley Detection},
     11277  pages = {327--335},
     11278  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11279  volume = {21},
     11280  author = {{L\'opez}, A.M. and Lumbreras, F. and Serrat, J. and Villanueva, J.J.}
     11281}
     11282@article{Beil1994,
     11283  year = {1994},
     11284  title = {Steerable Filters and Invariance Theory},
     11285  pages = {453--460},
     11286  journal = {Pattern Recognition Letters},
     11287  volume = {15},
     11288  author = {Beil, W.}
     11289}
     11290@book{Stauffer1985,
     11291  edition = {second},
     11292  year = {1985, 1994},
     11293  title = {Introduction to Percolation Theory},
     11294  publisher = {Taylor \& Francis},
     11295  author = {Stauffer, D. and Aharony, A.}
     11296}
     11297@inproceedings{Simoncelli1996a,
     11298  year = {1996},
     11299  title = {Noise Removal via Bayesian Wavelet Coring},
     11300  booktitle = {3rd IEEE International Conference on Image Processing (Lausanne, Switzerland)},
     11301  pages = {379--382},
     11302  author = {Simoncelli, E.P. and Adelson, E.H.}
     11303}
     11304@article{Shafarenko1997,
     11305  number = {11},
     11306  month = {November},
     11307  year = {1997},
     11308  title = {Automatic Watershed Segmentation of Randomly Textured Color Images},
     11309  pages = {1530--1544},
     11310  journal = {IEEE Transactions on Image Processing},
     11311  volume = {6},
     11312  author = {Shafarenko, Leila and Petrou, Maria and Kittler, Josef}
     11313}
     11314@article{Duhamel1988,
     11315  number = {2},
     11316  month = {February},
     11317  year = {1988},
     11318  title = {On Computing the Inverse DFT},
     11319  pages = {285--286},
     11320  journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
     11321  volume = {36},
     11322  annote = {key_fft},
     11323  author = {Duhamel, P. and Piron, B. and Etcheto, J.M.}
     11324}
     11325@article{Moser2006,
     11326  year = {2006},
     11327  title = {Filter cubes with built-in ultrabright light-emitting diodes as exchangeable excitation light sources in fluorescence microscopy},
     11328  pages = {135-140},
     11329  journal = {Journal of Microscopy},
     11330  volume = {222},
     11331  author = {Moser, C. and Mayr, T. and Klimant, I.}
     11332}
     11333@article{Morrone1988,
     11334  year = {1988},
     11335  title = {Feature Detection in Human Vision: a Phase-Dependent Energy Model},
     11336  pages = {221--245},
     11337  journal = {Proc. Roc. Soc. Lond. B},
     11338  volume = {235},
     11339  author = {Morrone, M.C. and Burr, D.C.}
     11340}
     11341@article{Giordano2002,
     11342  year = {2002},
     11343  title = {Diheteroarylethenes as Thermally Stable Photoswitchable Acceptors in Photochromic Fluorescence Resonance Energy Transfer ({pcFRET})},
     11344  pages = {7481-7489},
     11345  journal = {Journal of the American Chemical Society},
     11346  volume = {124},
     11347  author = {Giordano, L. and Jovin, T.M. and Irie, M. and Jare-Erijman, E.A.}
     11348}
     11349@article{Iddir2005,
     11350  year = {2005},
     11351  title = {Atomic scale characterization of the Pt/TiO$_2$ interface},
     11352  pages = {233-241},
     11353  journal = {Micron},
     11354  volume = {36},
     11355  author = {Iddir, H. and Disko, M.M. and Ogut, S. and Browning, N.D.}
     11356}
     11357@article{Bleau1992a,
     11358  number = {2},
     11359  month = {September},
     11360  year = {1992},
     11361  title = {A New Set of Fast Algorithms for Mathematical Morphology, {II}. Identification of Topographic Features on Grayscale Images},
     11362  pages = {210--229},
     11363  journal = {CVGIP: Image Understanding},
     11364  volume = {56},
     11365  author = {Bleau, A. and Guise, J. de and LeBlanc, A.-R.}
     11366}
     11367@article{Starink1996,
     11368  year = {1996},
     11369  title = {Background correction in scanning probe microscope recordings of macromolecules},
     11370  pages = {291-305},
     11371  journal = {Surface Science},
     11372  volume = {359},
     11373  author = {Starink, J.P.P. and Jovin, T.M.}
     11374}
     11375@inproceedings{Barth2000,
     11376  year = {2000},
     11377  title = {The minors of the structure tensor},
     11378  booktitle = {Mustererkennung 2000},
     11379  pages = {221--228},
     11380  editor = {Sommer, G. and Krger, N. and Perwass, C.},
     11381  address = {Berlin},
     11382  publisher = {Springer},
     11383  author = {Barth, E.}
     11384}
     11385@article{Sander2003,
     11386  year = {2003},
     11387  title = {Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra},
     11388  pages = {392-401},
     11389  journal = {Journal of Structural Biology},
     11390  volume = {142},
     11391  author = {Sander, B. and Golas, M.M. and Stark, H.}
     11392}
     11393@misc{Waagepetersen1997,
     11394  year = {1997},
     11395  title = {Contributions to the Statistical Modeling of Image Data and Spatial Point Processes},
     11396  note = {University of Aarhus},
     11397  howpublished = {www},
     11398  author = {Waagepetersen, R.}
     11399}
     11400@article{Hentschell1983,
     11401  number = {3},
     11402  year = {1983},
     11403  title = {The Infinite Number of Generalized Dimensions of Fractals and Strange Attractors},
     11404  pages = {435--444},
     11405  journal = {Physica D},
     11406  volume = {8},
     11407  author = {Hentschell, H.G.E. and Procaccia, I.}
     11408}
     11409@inproceedings{Croisier1976,
     11410  month = {August},
     11411  year = {1976},
     11412  title = {Perfect Channel Splitting by Use of Interpolation/Decimation/Tree Decomposition Techniques},
     11413  booktitle = {International Conference on Information Sciences and Systems},
     11414  pages = {443--446},
     11415  address = {Patras, Greece},
     11416  author = {Croisier, A. and Esteban, D. and Galand, C.}
     11417}
     11418@article{Barnard1980,
     11419  number = {4},
     11420  month = {July},
     11421  year = {1980},
     11422  title = {Disparity Analysis of Images},
     11423  pages = {527--534},
     11424  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11425  volume = {2},
     11426  author = {Barnard, S.T. and Thompson, W.B.}
     11427}
     11428@article{Desolneux2001,
     11429  year = {2001},
     11430  title = {Edge Detection by {Helmholtz} Principle},
     11431  pages = {271--284},
     11432  journal = {Journal of Mathematical Imaging and Vision},
     11433  volume = {14},
     11434  author = {Desolneux, A. and Moisan, L. and Morel, J.-M.}
     11435}
     11436@phdthesis{Picka1996,
     11437  month = {December},
     11438  year = {1996},
     11439  title = {Variance-Reducing Modifications for Estimators of Dependence in Random Sets},
     11440  address = {Chicago, USA},
     11441  school = {University of Chicago},
     11442  author = {Picka, J.D.}
     11443}
     11444@inproceedings{Dijk2003,
     11445  series = {Lecture Notes in Computer Science},
     11446  month = {Aug 25-27},
     11447  year = {2003},
     11448  title = {A new sharpness measure based on Gaussian lines and edges},
     11449  booktitle = {CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands)},
     11450  pages = {149-156},
     11451  editor = {Petkov, N. and Westenberg, M.A.},
     11452  volume = {2756},
     11453  address = {Berlin},
     11454  publisher = {Springer},
     11455  author = {Dijk, J. and Ginkel, M. van and Asselt, R.J. van and Vliet, L.J. van and Verbeek, P.W.}
     11456}
     11457@inproceedings{Dijk2002,
     11458  month = {June 19-21},
     11459  year = {2002},
     11460  title = {A new sharpness measure based on Gaussian lines and edges},
     11461  booktitle = {Proc. ASCI 2002, 8th Annual Conf. of the Advanced School for Computing and Imaging},
     11462  pages = {39--44},
     11463  editor = {Deprettere, E.F. and Belloum, A. and Heijnsdijk, J.W.J. and Stappen, F. van der},
     11464  address = {Delft},
     11465  publisher = {ASCI},
     11466  author = {Dijk, J. and Ginkel, M. van and Asselt, R.J. van and Vliet, L.J. van and Verbeek, P.W.}
     11467}
     11468@article{Bruijne2003,
     11469  year = {2003},
     11470  title = {Localization and segmentation of aortic endografts using marker detection},
     11471  pages = {473-482},
     11472  journal = {IEEE Transactions on Medical Imaging},
     11473  volume = {22},
     11474  author = {Bruijne, M. de and Niessen, W.J. and Maintz, J.B.A. and Viergever, M.A.}
     11475}
     11476@article{Rader1968,
     11477  number = {6},
     11478  month = {June},
     11479  year = {1968},
     11480  title = {Discrete {Fourier} Transforms When the Number of Data Samples is Prime},
     11481  pages = {1107--1108},
     11482  journal = {Proceedings of the IEEE},
     11483  volume = {56},
     11484  annote = {key_fft},
     11485  author = {Rader, C.M.}
     11486}
     11487@phdthesis{Robbins1996,
     11488  month = {August},
     11489  year = {1996},
     11490  title = {The Detection of {2D} Image Features using Local Energy},
     11491  address = {Australia},
     11492  school = {University of Western Australia},
     11493  author = {Robbins, B.J.}
     11494}
     11495@article{Ando2004,
     11496  year = {2004},
     11497  title = {Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting},
     11498  pages = {1370-1373},
     11499  journal = {Science},
     11500  volume = {306},
     11501  author = {Ando, R. and Muzuno, H. and Miyawaki, A.}
     11502}
     11503@article{Robbins1997,
     11504  number = {5},
     11505  year = {1997},
     11506  title = {{2D} Feature Detection via Local Energy},
     11507  pages = {353--368},
     11508  journal = {Image and Vision Computing},
     11509  volume = {15},
     11510  author = {Robbins, B. and Owens, R.}
     11511}
     11512@article{Stokke1990,
     11513  number = {13},
     11514  year = {1990},
     11515  title = {The reliability of wormlike polysaccharides chain dimensions estimated from electron micrographs},
     11516  pages = {1161-1181},
     11517  journal = {Biopolymers},
     11518  volume = {30},
     11519  author = {Stokke, B.T. and Brant, D.A.}
     11520}
     11521@article{Ando2000,
     11522  number = {3},
     11523  month = {March},
     11524  year = {2000},
     11525  title = {Consistent Gradient Operators},
     11526  pages = {252--265},
     11527  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11528  volume = {22},
     11529  author = {Ando, S.}
     11530}
     11531@techreport{Cullip1990,
     11532  year = {1990},
     11533  title = {Algorithms for 2D and 3D Image Description Based on the IAS},
     11534  note = {TR90-034},
     11535  institution = {University of North Carolina, U.S.A.},
     11536  author = {Cullip, T.J. and Fredericksen, R.E. and Gauch, J.M. and Pizer, S.M.}
     11537}
     11538@article{Dempster1977,
     11539  year = {1977},
     11540  title = {Maximum Likelihood from Incomplete Data via the {EM} algorithm},
     11541  pages = {1--37},
     11542  journal = {Journal of the Royal Statistical Society B},
     11543  volume = {39},
     11544  author = {Demster, A.P. and Laird, N.M. and Rubin, D.B.}
     11545}
     11546@article{Marshall1997,
     11547  number = {12},
     11548  year = {1998},
     11549  title = {Interphase chromosomes undergo constrained diffusional motion in living cells},
     11550  pages = {930-939},
     11551  journal = {Current Biology},
     11552  volume = {7},
     11553  author = {Marshall, W.F. and Straight, A. and Marko, J.F. and Swedlow, J. and Dernburg, A. and Murray, A.W. and Agard, D.A. and Sedat, J.W.}
     11554}
     11555@inproceedings{Borga1997,
     11556  month = {June 9-11},
     11557  year = {1997},
     11558  title = {Learning Canonical Correlations},
     11559  booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)},
     11560  pages = {1--8},
     11561  volume = {I},
     11562  author = {Borga, M. and Knutsson, H. and Landelius, T.}
     11563}
     11564@article{Perona1998,
     11565  number = {3},
     11566  month = {March},
     11567  year = {1998},
     11568  title = {Orientation Diffusions},
     11569  pages = {457--467},
     11570  journal = {IEEE Transactions on Image Processing},
     11571  volume = {7},
     11572  author = {Perona, P.}
     11573}
     11574@phdthesis{Borga1998,
     11575  year = {1998},
     11576  title = {Learning Multidimensional Signal Processing},
     11577  address = {{Link\"oping, Sweden}},
     11578  school = {{Link\"oping University}},
     11579  author = {Borga, M.}
     11580}
     11581@article{Perona1990,
     11582  number = {7},
     11583  month = {July},
     11584  year = {1990},
     11585  title = {Scale-Space and Edge Detection Using Anisotropic Diffusion},
     11586  pages = {629--639},
     11587  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11588  volume = {12},
     11589  author = {Perona, P. and Malik, J.}
     11590}
     11591@inproceedings{Wink2001,
     11592  year = {2001},
     11593  title = {Vessel Axis Determination Using Wave Front Propagation Analysis},
     11594  booktitle = {MICCAI'01},
     11595  pages = {845-853},
     11596  editor = {Niessen, W. and Viergever, M.A.},
     11597  author = {Wink, O. and Niessen, W.J. and Verdonck, B. and Viergever, M.A.}
     11598}
     11599@article{Perona1995,
     11600  number = {5},
     11601  month = {May},
     11602  year = {1995},
     11603  title = {Deformable Models for Early Vision},
     11604  pages = {488--499},
     11605  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11606  volume = {17},
     11607  author = {Perona, P.}
     11608}
     11609@book{Gauss1801,
     11610  year = {1801},
     11611  title = {Disquisitiones Arithmeticae},
     11612  address = {{G\"ottingen} },
     11613  publisher = {{K\"oniglichen Gesellschaft der Wissenschaft}},
     11614  author = {Gauss, C.F.}
     11615}
     11616@article{Dirks2003,
     11617  number = {1},
     11618  year = {2003},
     11619  title = {Visualizing {RNA} molecules inside the nucleus of living cells},
     11620  pages = {51-57},
     11621  journal = {Methods},
     11622  volume = {29},
     11623  author = {Dirks, R.W. and Molenaar, C. and Tanke, H.J.}
     11624}
     11625@article{Dirks2001,
     11626  number = {1},
     11627  year = {2001},
     11628  title = {Methods for visualizing RNA processing and transport pathways in living cells},
     11629  pages = {3-11},
     11630  journal = {Histochemistry and Cell Biology},
     11631  volume = {115},
     11632  author = {Dirks, R.W. and Molenaar, R.W. and Tanke, H.J.}
     11633}
     11634@article{Bangham1994,
     11635  number = {3},
     11636  year = {1994},
     11637  title = {Multiscale Median and Morphological Filters for 2D Pattern Recognition},
     11638  pages = {387--415},
     11639  journal = {Signal Processing},
     11640  volume = {38},
     11641  author = {Bangham, J.A. and Campbell, T.G. and Aldridge, R.V.}
     11642}
     11643@book{HandbookCP1992,
     11644  edition = {82th},
     11645  year = {1992},
     11646  title = {Handbook of Chemistry and Physics },
     11647  editor = {Lide, D.R. },
     11648  publisher = {CRC Press }
     11649}
     11650@article{Bangham1996,
     11651  number = {5},
     11652  month = {May},
     11653  year = {1996},
     11654  title = {Multiscale Nonlinear Decomposition: The Sieve Decomposition Theorem},
     11655  pages = {529--539},
     11656  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11657  volume = {18},
     11658  author = {Bangham, J.A. and Chardaire, P. and Pye, C.J. and Ling, P.D.}
     11659}
     11660@article{Clerc2002,
     11661  number = {4},
     11662  month = {April},
     11663  year = {2002},
     11664  title = {The Texture Gradient Equation for Recovering Shape from Texture},
     11665  pages = {536--549},
     11666  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11667  volume = {24},
     11668  author = {Clerc, M. and Mallat, S.}
     11669}
     11670@article{Dijkstra1959,
     11671  year = {1959},
     11672  title = {A note on two problems in connexion with graphs.},
     11673  pages = {269--271},
     11674  journal = {Numerische Mathematik },
     11675  volume = {1},
     11676  author = {Dijkstra, E.W.}
     11677}
     11678@article{Andrey1998,
     11679  number = {3},
     11680  month = {March},
     11681  year = {1998},
     11682  title = {Unsupervised Segmentation of {M}arkov Random Field Modeled Textured Images Using Selectionist Relaxation},
     11683  pages = {252--262},
     11684  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11685  volume = {20},
     11686  author = {Andrey, P. and Tarroux, P.}
     11687}
     11688@article{Hestenes1994,
     11689  number = {1},
     11690  year = {1994},
     11691  title = {Invariant Body Kinematics: {I}. Saccadic and Compensatory Eye Movements},
     11692  pages = {65--77},
     11693  journal = {Neural Networks},
     11694  volume = {7},
     11695  author = {Hestenes, D.}
     11696}
     11697@article{Osher1988,
     11698  year = {1988},
     11699  title = {Fronts Propagating with Curvature-Dependent Speed: Algorithms Based on {H}amilton-{J}acobi Formulations},
     11700  pages = {12--49},
     11701  journal = {Journal of Computational Physics},
     11702  volume = {79},
     11703  author = {Osher, S. and Sethian, J.A.}
     11704}
     11705@article{Ram2006,
     11706  number = {12},
     11707  year = {2006},
     11708  title = {Beyond {Rayleighs} criterion: {A} resolution measure with application to single-molecule microscopy},
     11709  pages = {4457-4462},
     11710  journal = {Proceedings of the National Academy of Sciences USA},
     11711  volume = {103},
     11712  author = {Ram, S. and Ward, E.S. and Ober, R.J.}
     11713}
     11714@article{Schwertner2004a,
     11715  number = {1},
     11716  year = {2004},
     11717  title = {Measurement of specimen induced aberrations of biological samples using phase stepping interferometry},
     11718  pages = {11-19},
     11719  journal = {Journal of Microscopy},
     11720  volume = {213},
     11721  author = {Schwertner, M. and Booth, M.J. and Neil, M.A.A. and Wilson, T.}
     11722}
     11723@article{Schwertner2004b,
     11724  number = {3},
     11725  year = {2004},
     11726  title = {Simulation of specimen-induced aberrations for objects with spherical and cylindrical symmetry},
     11727  pages = {271-280},
     11728  journal = {Journal of Microscopy},
     11729  volume = {215},
     11730  author = {Schwertner, M. and Booth, M.J. and Wilson, T.}
     11731}
     11732@article{Simoncelli1992,
     11733  number = {2},
     11734  month = {March},
     11735  year = {1992},
     11736  title = {Shiftable Multi-scale Transforms},
     11737  pages = {587--607},
     11738  journal = {IEEE Transactions on Information Theory},
     11739  volume = {38},
     11740  author = {Simoncelli, E.P. and Freeman, W.T. and Adelson, E.H. and Heeger, D.J.}
     11741}
     11742@article{Simoncelli1996,
     11743  number = {9},
     11744  year = {1996},
     11745  title = {Steerable wedge filters for local orientation analysis},
     11746  pages = {1377--1382},
     11747  journal = {IEEE Transactions on Image Processing},
     11748  volume = {5},
     11749  author = {Simoncelli, E.P. and Farid, H.}
     11750}
     11751@article{Viero1995,
     11752  number = {4},
     11753  month = {December},
     11754  year = {1995},
     11755  title = {Morphological Extraction of Line Networks from Noisy Low-Contrast Images},
     11756  pages = {335--347},
     11757  journal = {Journal of Visual Communication and Image Representation},
     11758  volume = {6},
     11759  author = {Viero, T. and Jeulin, D.}
     11760}
     11761@article{Simoncelli1990,
     11762  number = {4},
     11763  month = {April},
     11764  year = {1990},
     11765  title = {Non-Separable Extensions of Quadrature Mirror Filters to Multiple Dimensions},
     11766  pages = {652--664},
     11767  journal = {Proceedings of the IEEE},
     11768  volume = {78},
     11769  author = {Simoncelli, E.P. and Adelson, E.H.}
     11770}
     11771@inproceedings{Luengo2001b,
     11772  series = {Lecture Notes on Computer Science},
     11773  year = {2001},
     11774  title = {A Rotation-Invariant Morphology for Shape Analysis of Anisotropic Objects and Structures},
     11775  booktitle = {Proc. 4th International Workshop on Visual Form},
     11776  pages = {378--387},
     11777  editor = {Arcelli, C. and Cordella, L.P. and Sanniti, G. di Baja},
     11778  volume = {2059},
     11779  address = {Capri, Italy},
     11780  publisher = {Springer-Verlag},
     11781  author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
     11782}
     11783@inproceedings{Luengo2001a,
     11784  year = {2001},
     11785  title = {Segmentation-Free Estimation of Length Distributions Using Sieves and RIA Morphology},
     11786  booktitle = {Proc. 7th Annual Conference of the Advanced School for Computing and Imaging},
     11787  pages = {129--136},
     11788  address = {Heijen, the Netherlands},
     11789  publisher = {ASCI, Delft},
     11790  author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
     11791}
     11792@article{Khotanzad1990,
     11793  number = {5},
     11794  month = {May},
     11795  year = {1990},
     11796  title = {Invariant Image Recognition by {Z}ernike Moments},
     11797  pages = {489--497},
     11798  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11799  volume = {12},
     11800  author = {Khotanzad, A. and Hong, Y.H.}
     11801}
     11802@article{Lindenbaum1993,
     11803  number = {1},
     11804  year = {1993},
     11805  title = {On {G}abor's contribution to image enhancement},
     11806  pages = {1--8},
     11807  journal = {Pattern Recognition},
     11808  volume = {27},
     11809  author = {Lindenbaum, M. and Fischer, M. and Bruckstein, A.}
     11810}
     11811@article{Rose2002,
     11812  year = {2002},
     11813  title = {Theory of electron-optical achromats and apochromats},
     11814  pages = {293-303},
     11815  journal = {Ultramicroscopy},
     11816  volume = {93},
     11817  author = {Rose, H.}
     11818}
     11819@inproceedings{Hertzmann2001,
     11820  year = {2001},
     11821  title = {Image Analogies},
     11822  booktitle = {{SIGGRAPH}, Computer Graphics Proceedings},
     11823  pages = {327--340},
     11824  publisher = {ACM Press},
     11825  author = {Hertzmann, A. and Jacobs, C.E. and Oliver, N. and Curless, B. and Salesin, D.H.}
     11826}
     11827@article{Rose2005,
     11828  year = {2005},
     11829  title = {Prospects for aberration-free electron microscopy},
     11830  pages = {1-6},
     11831  journal = {Ultramicroscopy},
     11832  volume = {103},
     11833  author = {Rose, H.}
     11834}
     11835@article{Rioul1991,
     11836  month = {October},
     11837  year = {1991},
     11838  title = {Wavelets and Signal Processing},
     11839  pages = {14--38},
     11840  journal = {IEEE Signal Processing Magazine},
     11841  author = {Rioul, O. and Vetterli, M.}
     11842}
     11843@article{Torok1995,
     11844  number = {2},
     11845  year = {1995},
     11846  title = {Electromagnetic diffraction of light focused through a planar interface between materials of mismatched refractive indices: an integral representation},
     11847  pages = {325-332},
     11848  journal = {Journal of the Optical Society of America A},
     11849  volume = {12},
     11850  author = {{T\"or\"ok}, P. and Varga, P. and Laczik, Z. and Booker, G.R. }
     11851}
     11852@article{Acton2001,
     11853  year = {2001},
     11854  title = {Fast Algorithms for Area Morphology},
     11855  pages = {187--203},
     11856  journal = {Digital Signal Processing},
     11857  volume = {11},
     11858  author = {Acton, S.T.}
     11859}
     11860@article{Acton2000,
     11861  number = {4},
     11862  month = {April},
     11863  year = {2000},
     11864  title = {Scale Space Classification Using Area Morphology},
     11865  pages = {623--635},
     11866  journal = {IEEE Transactions on Image Processing},
     11867  volume = {9},
     11868  author = {Acton, Scott T. and Mukherjee, Dipti Prasad}
     11869}
     11870@article{Vonck2000,
     11871  year = {2000},
     11872  title = {Parameters a?ecting specimen flatness of two-dimensional crystals for electron crystallography},
     11873  pages = {123-129},
     11874  journal = {Ultramicroscopy},
     11875  volume = {85},
     11876  author = {Vonck, J.}
     11877}
     11878@book{Bishop1998,
     11879  year = {1998},
     11880  title = {Neural Networks for Pattern Recognition},
     11881  address = {New York},
     11882  publisher = {Oxford University Press},
     11883  author = {Bishop, C.M.}
     11884}
     11885@book{Bishop1995,
     11886  year = {1995},
     11887  title = {Neural Networks for Pattern Recognition},
     11888  publisher = {Oxford University Press},
     11889  author = {Bishop, C.M.}
     11890}
     11891@misc{Hough1962,
     11892  year = {1962},
     11893  title = {Method and Means for Recognizing Complex Patterns},
     11894  howpublished = {US misc nr. 3069654},
     11895  author = {Hough, P.V.C.}
     11896}
     11897@article{Clayton2004,
     11898  year = {2004},
     11899  title = {Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data},
     11900  pages = {1-5},
     11901  journal = {Journal of Microscopy},
     11902  volume = {213},
     11903  author = {Clayton, A.H.A. and Hanley, Q.S. and Verveer, P.J.}
     11904}
     11905@article{Maintz1996kort,
     11906  number = {4},
     11907  year = {1996},
     11908  title = {Evaluation of ridge seeking operators for multimodality medical image matching },
     11909  pages = {353--365},
     11910  journal = {PAMI},
     11911  volume = {18},
     11912  author = {Maintz, J.B.A. and Elsen, P.A. van den and Viergever, M.A. }
     11913}
     11914@phdthesis{SMALLSMALLGinkel2002,
     11915  year = {2002},
     11916  title = {Image Analysis using Orientation Space based on Steerable Filters},
     11917  address = {Delft, The Netherlands},
     11918  school = {Delft University of Technology},
     11919  author = {Ginkel, M. van}
     11920}
     11921@misc{Stereology2000,
     11922  month = {20-25 May},
     11923  year = {2000},
     11924  title = {Summer School on Stereology and Geometric Tomography},
     11925  note = {Sandberg Manor, Denmark },
     11926  howpublished = {www}
     11927}
     11928@article{Clayton2002,
     11929  number = {3},
     11930  year = {2002},
     11931  title = {Dynamic Fluorescence Anisotropy Imaging Microscopy in the Frequency Domain {(rFLIM)}},
     11932  pages = {1631-1649},
     11933  journal = {Biophysical Journal},
     11934  volume = {83},
     11935  author = {Clayton, A.H.A. and Hanley, Q.S. and Arndt-Jovin, D.J. and Subramaniam, V. and Jovin, T.M.}
     11936}
     11937@article{Desolneux2002,
     11938  number = {10},
     11939  year = {2002},
     11940  title = {Dequantizing image orientation},
     11941  pages = {1129--1140},
     11942  journal = {IEEE Transactions on Image Processing},
     11943  volume = {11},
     11944  author = {Desolneux, A. and Ladjal, S. and Moisan, L. and Morel, J.-M.}
     11945}
     11946@inproceedings{Bigun1987,
     11947  month = {June 8-11},
     11948  year = {1987},
     11949  title = {Optimal orientation detection of linear symmetry},
     11950  booktitle = {Proceedings of the first IEEE International Conference on Computer Vision},
     11951  pages = {433-438},
     11952  address = {London},
     11953  publisher = {IEEE Computer Society Press},
     11954  author = {{Big\"un}, J. and Granlund, G.H.}
     11955}
     11956@techreport{Bigun1986,
     11957  number = {LIU-TEK-LIC-1986:25},
     11958  title = {Circular Symmetry Models in Image Processing.},
     11959  note = {Thesis No. 85},
     11960  type = {Lic. Thesis},
     11961  address = {{Link\"oping University}, Sweden},
     11962  institution = {Computer Vision Laboratory},
     11963  author = {{Big\"un}, J.}
     11964}
     11965@article{Bowie1977a,
     11966  number = {6},
     11967  year = {1977},
     11968  title = {An Analysis Technique for Biological Shape -- {III}},
     11969  pages = {739--746},
     11970  journal = {Acta Cytologica},
     11971  volume = {21},
     11972  author = {Bowie, J.E. and Young, I.T.}
     11973}
     11974@article{Glossop1999,
     11975  number = {1},
     11976  month = {April},
     11977  year = {1999},
     11978  title = {An implementation of the Hough Transformation for the Identification and Labeling of Fixed Period Sinusoidal Curves},
     11979  pages = {96--100},
     11980  journal = {Computer Vision and Image Understanding},
     11981  volume = {74},
     11982  annote = {key_radon},
     11983  author = {Glossop, K. and Lisboa, P.J.G. and Russell, P.C. and Siddans, A. and Jones, G.R.}
     11984}
     11985@article{Crowley1984,
     11986  number = {2},
     11987  month = {March},
     11988  year = {1984},
     11989  title = {A Representation for Shape Based on Peaks and Ridges in the Difference of Low-Pass Transform},
     11990  pages = {156--170},
     11991  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11992  volume = {6},
     11993  author = {Crowley, J.L. and Parker, A.C.}
     11994}
     11995@inproceedings{Kraaijveld2000,
     11996  month = {June 4-7},
     11997  year = {2000},
     11998  title = {Harnessing Advanced Image Analysis Technology for Quantitative Core and Borehole Image Interpretation},
     11999  booktitle = {proceedings of the 41st SPWLA annual symposium, Dallas},
     12000  pages = {paper VV},
     12001  author = {Kraaijveld, M.A. and Epping, W.J.M.}
     12002}
     12003@article{Joanicot1987,
     12004  number = {2},
     12005  year = {1987},
     12006  title = {{DNA} conformational studies from electron microscopy. {I. Excluded} volume effect and structure dimensionality},
     12007  pages = {315-326},
     12008  journal = {Biopolymers},
     12009  volume = {26},
     12010  author = {Joanicot, M. and Revet, B.}
     12011}
     12012@article{Brown2003,
     12013  number = {8},
     12014  month = {August},
     12015  year = {2003},
     12016  title = {Advances in Computational Stereo},
     12017  pages = {993--1007},
     12018  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12019  volume = {25},
     12020  author = {Brown, M.Z. and Burschka, D. and Hager, G.D.}
     12021}
     12022@article{Typke2004,
     12023  year = {2004},
     12024  title = {Electron Microscopy of Biological Macromolecules: Bridging the GAp between What Physics Allows and What We Currently Can Get},
     12025  pages = {21-27},
     12026  journal = {Microscopy and Microanalysis},
     12027  volume = {10},
     12028  author = {Typke, D. and Duwning, K.H. and Glaeser, R.M.}
     12029}
     12030@book{Simmonds1982,
     12031  year = {1982},
     12032  title = {A Brief on Tensor Analysis},
     12033  publisher = {Springer-Verlag},
     12034  author = {Simmonds, J.G.}
     12035}
     12036@article{Li2004,
     12037  number = {8},
     12038  year = {2004},
     12039  title = {A maximum likelihood approach for image registration using control point and intensity},
     12040  pages = {1115-1127},
     12041  journal = {IEEE Transactions on Image Processing},
     12042  volume = {13},
     12043  author = {Li, W. and Leung, W.}
     12044}
     12045@book{Cressie1993,
     12046  edition = {Revised},
     12047  year = {1993},
     12048  title = {Statistics for Spatial Data},
     12049  publisher = {John Wiley \& Sons, inc},
     12050  author = {Cressie, N.A.C.}
     12051}
     12052@article{McLaughlin1998,
     12053  number = {4},
     12054  month = {April},
     12055  year = {1998},
     12056  title = {The Hough Transform Versus the Upwrite},
     12057  pages = {396--400},
     12058  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12059  volume = {20},
     12060  annote = {key_radon},
     12061  author = {McLaughlin, R.A. and Alder, M.D.}
     12062}
     12063@inproceedings{Rieger2003b,
     12064  series = {LNCS 2756},
     12065  month = {August 25-27 },
     12066  year = {2003},
     12067  title = {Representing Orientation in n-Dimensional Spaces},
     12068  booktitle = {CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands) },
     12069  pages = {17-24},
     12070  editor = {Petkov, N. and Westenberg, M.A.},
     12071  address = {Berlin},
     12072  publisher = {Springer Verlag},
     12073  author = {Rieger, B. and Vliet, L.J. van}
     12074}
     12075@article{Rieger2003c,
     12076  number = {3},
     12077  year = {2003},
     12078  title = {Ring Formation in Nanoliter Cups: Quantitative Measurements of Flow in Micromachined Wells},
     12079  pages = {036312},
     12080  journal = {Physical Review E},
     12081  volume = {68},
     12082  author = {Rieger, B. and Doel, L.R. van den and Vliet, L.J. van }
     12083}
     12084@inproceedings{Rieger2003a,
     12085  month = {June 4-6},
     12086  year = {2003},
     12087  title = {Affine correction without correspondence applied to 4D cellular motion in confocal microscopy},
     12088  booktitle = {ASCI'03, Proceedings of the 9th Annual Conference of the Advanced School for Computing and Imaging (Lommel, Belgium) },
     12089  editor = {Vassiliadis, S. and Florak, L.M.J. and Heijnsdijk, J.W.J and Steen, A. van den},
     12090  author = {Rieger, B. and Molenaar, C. and Dirks, R.W. and Vliet, L.J. van}
     12091}
     12092@article{Grayson1987,
     12093  year = {1987},
     12094  title = {The heat equation shrinks embedded plane curves to round points},
     12095  pages = {285--314},
     12096  journal = {Journal of Differential Geometry},
     12097  volume = {26},
     12098  author = {Grayson, M.}
     12099}
     12100@article{Danielsson1990,
     12101  number = {2},
     12102  year = {1990},
     12103  title = {Rotation Invariance in Gradient and Higher Order Derivative Detectors},
     12104  pages = {198--221},
     12105  journal = {Computer Vision, Graphics, and Image Processing},
     12106  volume = {49},
     12107  author = {Danielsson, P.-E. and Seger, O.}
     12108}
     12109@article{Hanley2001,
     12110  year = {2001},
     12111  title = {Fluorescence Lifetime Imaging: Multi-point Calibration, Minimum Resolvable Differences, and Artifact Suppression},
     12112  pages = {248-260},
     12113  journal = {Cytometry},
     12114  volume = {43},
     12115  author = {Hanley, Q.S. and Subramaniam, V. and Arndt-Jovin, D.J. and Jovin, T.M.}
     12116}
     12117@article{Hanley2002,
     12118  number = {56},
     12119  year = {2002},
     12120  title = {Spectrally resolved fluorescence lifetime imaging microscopy},
     12121  pages = {155-166},
     12122  journal = {Applied Spectroscopy},
     12123  author = {Hanley, Q.S. and Ardent-Jovin, D.J. and Jovin, T.M.}
     12124}
     12125@article{Saffman1975,
     12126  number = {8},
     12127  year = {1975},
     12128  title = {Brownian motion in biolocial membranes},
     12129  pages = {3111-3113},
     12130  journal = {Proc. Nat. Acad. Sci. USA},
     12131  volume = {72},
     12132  author = {Saffman, P.G. and {Delbr\"uck}, M.}
     12133}
     12134@article{Casadio1999,
     12135  month = {February},
     12136  year = {1999},
     12137  title = {Characterization of the Range of the {Radon} Transform on Homogeneous Trees},
     12138  pages = {11--17},
     12139  journal = {Electronic Research Announcements of the American Mathematical Society},
     12140  volume = {5},
     12141  author = {Casadio Tarabusi, E. and Cohen, J.M. and Colonna, F.}
     12142}
     12143@article{Goldberg1991a,
     12144  number = {1},
     12145  year = {1991},
     12146  title = {What Every Computer Scientist Should Know about Floating-Point Arithmetic},
     12147  pages = {5--48},
     12148  note = {A reprint. Extended?},
     12149  journal = {ACM Computing Surveys},
     12150  volume = {23},
     12151  author = {Goldberg, D.}
     12152}
     12153@article{Willert1991,
     12154  year = {1991},
     12155  title = {Digital particle image velocimetry},
     12156  pages = {181-193},
     12157  journal = {Experiments in Fluids},
     12158  volume = {10},
     12159  author = {Willert, C.E. and Gharib, M.}
     12160}
     12161@article{Soille2001,
     12162  number = {11},
     12163  month = {November},
     12164  year = {2001},
     12165  title = {Directional Morphological Filtering},
     12166  pages = {1313--1329},
     12167  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12168  volume = {23},
     12169  author = {Soille, Pierre and Talbot, Hugues}
     12170}
     12171@article{Soille2002,
     12172  year = {2002},
     12173  title = {Short Survey on Morphological Operators Based on Rank Filters},
     12174  pages = {527-535},
     12175  journal = {Pattern Recognition},
     12176  volume = {35},
     12177  author = {Soille, P.}
     12178}
     12179@book{Landau1999,
     12180  edition = {third},
     12181  year = {1999},
     12182  title = {Statistical Physics, Part 1},
     12183  publisher = {Butterworth-Heinemann},
     12184  author = {Landau, L.D. and Lifshitz, E.M.}
     12185}
     12186@article{Rintoul1997,
     12187  year = {1997},
     12188  title = {Precise determination of the critical threshold and exponents in a three-dimensional continuum percolation model},
     12189  pages = {585--592},
     12190  journal = {J. Phys. A: Math Gen},
     12191  volume = {30},
     12192  author = {Rintoul, M.D. and Torquato, S.}
     12193}
     12194@article{Belongie2002,
     12195  number = {4},
     12196  month = {April},
     12197  year = {2002},
     12198  title = {Shape Matching and Object Recognition Using Shape Contexts},
     12199  pages = {509--522},
     12200  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12201  volume = {24},
     12202  author = {Belongie, S. and Malik, J. and Puzicha, J.}
     12203}
     12204@phdthesis{Reinders2001,
     12205  year = {2001},
     12206  title = {Feature-Based Visualization of Time-Dependent Data},
     12207  address = {The Netherlands},
     12208  school = {Delft University of Technology},
     12209  author = {Reinders, F.}
     12210}
     12211@article{Deans1981,
     12212  number = {2},
     12213  month = {March},
     12214  year = {1981},
     12215  title = {{H}ough Transform from the {R}adon Transform},
     12216  pages = {185--188},
     12217  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12218  volume = {3},
     12219  annote = {key_radon},
     12220  author = {Deans, S.R.}
     12221}
     12222@article{Meijering2003,
     12223  number = {4},
     12224  month = {April},
     12225  year = {2003},
     12226  title = {A Note on Cubic Convolution Interpolation},
     12227  pages = {477--479},
     12228  journal = {IEEE Transactions on Image Processing},
     12229  volume = {12},
     12230  author = {Meijering, E. and Unser, M.}
     12231}
     12232@article{Meijering2002,
     12233  number = {3},
     12234  month = {March},
     12235  year = {2002},
     12236  title = {A Chronology of Interpolation: From Ancient Astronomy to Modern Signal and Image Processing},
     12237  pages = {319--342},
     12238  journal = {Proceedings of the IEEE},
     12239  volume = {90},
     12240  author = {Meijering, E.}
     12241}
     12242@incollection{Jovin1989,
     12243  year = {1989},
     12244  title = {{FRET} Microscopy: Digital Imaging of Fluorescence Resonance Energy Transfer. Application in Cell Biology},
     12245  booktitle = {Cell Structure and Function by Microspectrofluorometry},
     12246  pages = {99-117},
     12247  editor = {Kohen, E.},
     12248  address = {New York},
     12249  publisher = {Academic Press},
     12250  author = {Jovin, T.M. and Arndt-Jovin, D.J.}
     12251}
     12252@article{Egner2004,
     12253  number = {1},
     12254  year = {2004},
     12255  title = {{4Pi}-microscopy of the {Golgi} apparatus in live mammalian cells},
     12256  pages = {70-76},
     12257  journal = {Journal of Structural Biology},
     12258  volume = {147},
     12259  author = {Egner, A. and Verrier, S. and Goroshkov, A. and Shing, H-D. and Hell, S.W.}
     12260}
     12261@article{Dorst1987,
     12262  year = {1987},
     12263  title = {Length Estimators for Digitized Contours},
     12264  pages = {311--333},
     12265  journal = {Computer Vision, Graphics and Image Processing},
     12266  volume = {40},
     12267  author = {Dorst, L. and Smeulders, A.W.M.}
     12268}
     12269@article{Dorst1986,
     12270  number = {2},
     12271  month = {March},
     12272  year = {1986},
     12273  title = {Best Linear Unbiased Estimators for Properties of Digitized Straight Lines},
     12274  pages = {276--282},
     12275  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12276  volume = {8},
     12277  author = {Dorst, L. and Smeulders, A.W.M.}
     12278}
     12279@incollection{Olver1994,
     12280  year = {1994},
     12281  title = {Differential invariant signatures and flows in computer vision: a symmetry group approach},
     12282  booktitle = {Geometry-driven diffusion in computer vision},
     12283  pages = {255--306},
     12284  editor = {Ter Haar Romeny B.M.},
     12285  chapter = {11},
     12286  publisher = {Kluwer Academic Publishers},
     12287  author = {Olver, P. and Sapiro, G. and Tannenbaum, A.}
     12288}
     12289@techreport{Dorst1980,
     12290  year = {1980},
     12291  title = {A Coordinate System for the Crystal Ball},
     12292  institution = {CERN},
     12293  author = {Dorst, L.}
     12294}
     12295@article{Hoyer2002,
     12296  number = {2},
     12297  year = {2002},
     12298  title = {Dependence of $\alpha$-synuclein aggregate morphology on solution conditions},
     12299  pages = {383-393},
     12300  journal = {Journal of Molecular Biology},
     12301  volume = {322},
     12302  author = {Hoyer, W. and Antony, T. and Cherny, D.I. and Heim, G. and Jovin, T.M. and Subramaniam, V.}
     12303}
     12304@inproceedings{Ginneken1999,
     12305  series = {Lecture Notes on Computer Science},
     12306  title = {Applications of Locally Orderless Images},
     12307  booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)},
     12308  pages = {10--21},
     12309  editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
     12310  volume = {1682},
     12311  publisher = {Springer-Verlag},
     12312  author = {Ginneken, B. van and Haar Romeny, B. M. ter}
     12313}
     12314@article{Mitiche1988,
     12315  number = {6},
     12316  year = {1988},
     12317  title = {On smoothness of a vector field-application to optical flow},
     12318  pages = {943--949},
     12319  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12320  volume = {10},
     12321  author = {Mitiche, A. and Grisell, R. and Aggarwal, J.K.}
     12322}
     12323@article{Cognet1999,
     12324  number = {3},
     12325  year = {1999},
     12326  title = {Static curvature and flexibility measurements of {DNA} with microscopy. {A} simple renormalization method, its assessment by experiment and simulation},
     12327  pages = {997-1009},
     12328  journal = {Journal of Molecular Biology},
     12329  volume = {285},
     12330  author = {Cognet, J.A.H. and Pakleza, C. and Cherny, D.I. and Delain, E. and Cam, E. le}
     12331}
     12332@article{Segall2006,
     12333  year = {2006},
     12334  title = {Volume-Exclusion Effects in Tethered-Particle Experiments: Bead Size Matters},
     12335  pages = {088306},
     12336  journal = {Physical Review Letters},
     12337  volume = {96},
     12338  author = {Segall, D.E. and Nelson, P.C. and Phillips, R.}
     12339}
     12340@article{Krieger1996,
     12341  number = {6},
     12342  month = {June},
     12343  year = {1996},
     12344  title = {Nonlinear Image Operators for the Evaluation of Local Intrinsic Dimensionality},
     12345  pages = {1026--1042},
     12346  journal = {IEEE Transactions on Image Processing},
     12347  volume = {5},
     12348  author = {Krieger, G. and Zetzsche, C.}
     12349}
     12350@book{Rudin1991,
     12351  edition = {second},
     12352  year = {1991, 1973},
     12353  title = {Functional Analysis},
     12354  publisher = {McGraw-Hill},
     12355  author = {Rudin, W.}
     12356}
     12357@article{Mattfeldt2000a,
     12358  month = {November},
     12359  year = {2000},
     12360  title = {Improved Estimation of the Pair Correlation Function of Random Sets},
     12361  pages = {158--173},
     12362  journal = {Journal of Microscopy},
     12363  volume = {200, Pt 2},
     12364  author = {Mattfeldt, T. and Stoyan, D.}
     12365}
     12366@article{Toprak2007,
     12367  number = {7},
     12368  year = {2007},
     12369  title = {Three-Dimensional Particle Tracking via Bifocal Imaging},
     12370  pages = {2043-2045},
     12371  journal = {Nano Letter},
     12372  volume = {7},
     12373  author = {Toprak, E. and Balci, H. and Blehm, B.H. and  Selvin, P.R.}
     12374}
     12375@article{Xu2010,
     12376  year = {2010},
     12377  title = {From thickness dependent exit waves to projected potential: Thickness derivative approach},
     12378  pages = {535-542},
     12379  journal = {Ultramicroscopy},
     12380  volume = {110},
     12381  author = {Xu, Q. and Dyck, D. van and Zandbergen, H.W.}
     12382}
     12383@article{Zewail2010,
     12384  year = {2010},
     12385  title = {Four-Dimensional Electron Microscopy},
     12386  pages = {187-193},
     12387  journal = {Science},
     12388  volume = {328},
     12389  author = {Zewail, A. H. and }
     12390}
     12391@article{Pertsinidis2010,
     12392  year = {2010},
     12393  title = {Subnanometre single-molecule localization, registration and distance measurements},
     12394  journal = {Nature},
     12395  author = {Pertsinidis, A. and Zhang, Y. and Chu, S.}
     12396}
     12397@article{Okamoto2010,
     12398  year = {2010},
     12399  title = {Subnanometre single-molecule localization,
     12400registration and distance measurements},
     12401  pages = {043807},
     12402  journal = {Physical Review A},
     12403  volume = {38},
     12404  author = {Okamoto, H.}
     12405}
     12406@article{Muller2010,
     12407  year = {2010},
     12408  title = {Image Scanning Microscopy},
     12409  pages = {198101},
     12410  journal = {Physical Review Letters},
     12411  volume = {104},
     12412  author = {{M\"uller}, C.B. and Enderlein, J.}
     12413}
     12414@article{Jonge2010,
     12415  year = {2010},
     12416  title = {Nanometer-resolution electron microscopy through micrometers-thick water layers},
     12417  pages = {1114-1119},
     12418  journal = {Ultramicroscopy},
     12419  volume = {110},
     12420  author = {Jonge, N. de and Poirier-Demes, N. and Dermes, H. and Peckys, D.B. and Drouin, D.}
     12421}
     12422@article{Kouskousis2010,
     12423  number = {7},
     12424  year = {2010},
     12425  title = {Super-resolution imaging and statistical analysis
     12426of {CdSe/CdS} Core/Shell semiconductor nanocrystals},
     12427  pages = {437-445},
     12428  journal = {Journal of Biophotonics},
     12429  volume = {3},
     12430  author = {Kouskousis, B.P. and Embden J. van and Morrish, D. and Russell, S.M. and Gu, M.}
     12431}
     12432@article{Stark2001,
     12433  year = {2001},
     12434  title = {Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle},
     12435  pages = {539-541},
     12436  journal = {Nature},
     12437  volume = {409},
     12438  author = {Stark, H. and Dube, P. and {L\"uhrmann}, R. and Kastner, B.}
     12439}
     12440@article{Milazzo2010,
     12441  year = {2010},
     12442  title = {Characterization of a direct detection device imaging camera for transmission electron microscopy},
     12443  pages = {744-747},
     12444  journal = {Ultramicroscopy},
     12445  volume = {110},
     12446  author = {Milazzo, A-C. and Moldovan, G. and Lanman, J. and Jin, L. and Bouwer, J.C. and Klienfelder, S. and Peltier, S.T. and Ellisman, M.H. and Kirkland, A.I. and Xoung, N.-H.}
     12447}
     12448@article{Lupini2010,
     12449  year = {2010},
     12450  title = {Aberration measurement using the Ronchigram contrast transfer function},
     12451  pages = {891-898},
     12452  journal = {Ultramicroscopy},
     12453  volume = {110},
     12454  author = {Lupini, A.R. and Wang, P. and Nellist, P.D. and Kirkland, A.I. and Pennycook, S.J.}
     12455}
     12456@article{Saxton1982,
     12457  number = {2},
     12458  year = {1982},
     12459  title = {The correlation averaging of a regularly arranged bacterial cell envelope protein},
     12460  pages = {127-138},
     12461  journal = {Journal of Microscopy},
     12462  volume = {127},
     12463  author = {Saxton, W.O and Baumeister, W.}
     12464}
     12465@article{Rudnaya2010,
     12466  year = {2010},
     12467  title = {Evaluating sharpness functions for automated scanning
     12468electron microscopy},
     12469  journal = {Journal of Microscopy},
     12470  author = {Rudnaya, M.E. and Mattheij, R.M.M. and Maubach, J.M.L.}
     12471}
     12472@inproceedings{Brinkers2010,
     12473  month = {April 14-17},
     12474  year = {2010},
     12475  title = {Single Molecule Detection Of Tuberculosis Nucleic Acid Using Dark Field Tethered Particle Motion},
     12476  booktitle = {IEEE International Symposium on Biomedical Imaging},
     12477  pages = {1269},
     12478  address = {Rotterdam, The Netherlands},
     12479  author = {Brinkers, Sanneke and Dietrich, Heidelinde R. C. and Stallinga, Sjoerd and Mes, Jurriaan J. and Young, Ian T. and Rieger, Bernd}
     12480}
     12481@article{Cordes2010,
     12482  year = {2010},
     12483  title = {Single-Molecule Redox Blinking of Perylene Diimide
     12484Derivatives in Water},
     12485  journal = {Journal of the American Chemical Society},
     12486  author = {Cordes, T. and Vogelsang, J. and Anaya, M. and Spaguolo, C. and Gietl, A. and Summerer, W. and Herrmann, A. and {M\"ullen}, K. and Tinnefeld, P.}
     12487}
     12488@article{Jiang2010,
     12489  year = {2010},
     12490  title = {A novel approximation method of CTF amplitude correction of 3D single particle reconstruction},
     12491  journal = {Ultramicroscopy},
     12492  author = {Jiang, L. and Liu, Z. and Georgieva, D. and Kuil, M.E. and Abrahams, J.P.}
     12493}
     12494@article{Dwyer2010,
     12495  year = {2010},
     12496  title = {Simulation of scanning transmission electron microscope images on desktop computers},
     12497  pages = {195-198},
     12498  journal = {Ultramicroscopy},
     12499  volume = {110},
     12500  author = {Dwyer, C.}
     12501}
     12502@article{Tamura2010,
     12503  year = {2010},
     12504  title = {Third-order spherical aberration correction using multistage self-aligned quadrupole correction-lens systems},
     12505  journal = {Journal of Electron Microscopy},
     12506  author = {Tamrua, K. and Okayama, S. and Shimizu, R.}
     12507}
     12508@article{Paik2009,
     12509  number = {8},
     12510  year = {2009},
     12511  title = {Integrating a High-Force Optical Trap with Gold Nanoposts and a Robust Gold-DNA Bond},
     12512  pages = {2978-2983},
     12513  journal = {Nano Letters},
     12514  volume = {9},
     12515  author = {Paik, D.H. and Seol, Y. and Halsey, W.A. and Perkins, T.T.}
     12516}
     12517@article{Oijen1998,
     12518  year = {1998},
     12519  title = {3-Dimensional super-resolution by spectrally selective imaging},
     12520  pages = {183-187},
     12521  journal = {Chemical Physics Letters},
     12522  volume = {292},
     12523  author = {Oijen, A.M. van and {K\"ohler}, J. and Schmidt, J. and {M\"uller}, M. and Brakenhoff, G.J.}
     12524}
     12525@article{Marzetta1993,
     12526  number = {6},
     12527  year = {1993},
     12528  title = {A Simple derivation of the constrained multiple parameter Cramer-Rao Bound},
     12529  pages = {2247-2249},
     12530  journal = {IEEE Transactions on Signal Processing},
     12531  volume = {41},
     12532  author = {Marzetta, T.L.}
     12533}
     12534@article{Mortensen2010,
     12535  number = {5},
     12536  year = {2010},
     12537  title = {Optimized localization analysis for single-molecule tracking and super-resolution microscopy},
     12538  pages = {377-384},
     12539  journal = {Nature Methods},
     12540  volume = {7},
     12541  author = {Mortensen, K.I. and Churchman, L.S. and Spudich, J.A. and Flyvbjerg}
     12542}
     12543@article{Chang2010,
     12544  year = {2010},
     12545  title = {Zernike Phase Plate Cryoelectron Microscopy
     12546Facilitates Single Particle Analysis of Unstained
     12547Asymmetric Protein Complexes},
     12548  pages = {17-27},
     12549  journal = {Structure},
     12550  volume = {18},
     12551  author = {Chang, W-H. and Chiu, M.T.K. and CHen, C.-Y. and Yen, C.F. and Lin,Y.-C. and Weng, Y.-P. and Chang, J.-C. and Wu, Y.-M. and Cheng, H. and Fu, J. and Tu, I-P.}
     12552}
     12553@article{Smith2010,
     12554  number = {5},
     12555  year = {2010},
     12556  title = {Fast, single-molecule localization that achieves theoretically minimum uncertainty},
     12557  pages = {373-375},
     12558  journal = {Nature Methods},
     12559  volume = {7},
     12560  author = {Smith, C.S. and Joseph, N. and Rieger, B. and Lidke, K.A.}
     12561}
     12562@article{Serge2008,
     12563  number = {8},
     12564  year = {2008},
     12565  title = {Dynamic multiple-target tracing to probe
     12566spatiotemporal cartography of cell membranes},
     12567  pages = {687-694},
     12568  journal = {Nature Methods},
     12569  volume = {5},
     12570  author = {Serge, A. and Bertaux, N. and Rigneault, H. and Marguet, D.}
     12571}
     12572@article{Aguet2005,
     12573  number = {26},
     12574  year = {2005},
     12575  title = {Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes},
     12576  pages = {10503-10522},
     12577  journal = {Optics Express},
     12578  volume = {13},
     12579  author = {Aguet, F. and Ville, D. van de and Unser, M.}
     12580}
     12581@article{Harauz1997,
     12582  number = {4},
     12583  year = {1997},
     12584  title = {Exact filters for general geometry three dimensional reconstruction},
     12585  pages = {146-156},
     12586  journal = {Optik},
     12587  volume = {78},
     12588  author = {Harauz, G. and Heel, M. van}
     12589}
     12590@article{Lingwood2009,
     12591  year = {2009},
     12592  title = {Lipid rafts as a membrane organizing principle},
     12593  pages = {46-53},
     12594  journal = {Science},
     12595  volume = {327},
     12596  author = {Lingwood, D. and Simons, K.}
     12597}
     12598@article{Baddeley2010,
     12599  year = {2010},
     12600  title = {Visualization of localization microscopy data},
     12601  pages = {64-72},
     12602  journal = {Microscopy and Microanalysis},
     12603  volume = {16},
     12604  author = {Baddeley, D. and Cannell, M.B. and Soeller, C.}
     12605}
     12606@inbook{Krivanek2010,
     12607  year = {2010},
     12608  title = {Advances in Imaging and Electron Physics},
     12609  pages = {121-160},
     12610  volume = {153},
     12611  chapter = {Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy},
     12612  publisher = {Elsevier},
     12613  author = {Krivanek, O.L. and Delby, N. and Keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.}
     12614}
     12615@article{Jaqaman2008,
     12616  number = {8},
     12617  year = {2008},
     12618  title = {Robust single-particle tracking in live-cell time-lapse sequences},
     12619  pages = {695-702},
     12620  journal = {Nature Methods},
     12621  volume = {5},
     12622  author = {Jaqaman, K. and Loerke, D. and Mettlen, M. and Kuwara, H. and Grinstein, S. and Schmid, S.L. and Danuser, G.}
     12623}
     12624@article{Li2010,
     12625  year = {2010},
     12626  title = {Measurement of the Instantaneous Velocity of a Brownian Particle},
     12627  pages = {1673-1676},
     12628  journal = {Science},
     12629  volume = {328},
     12630  author = {Li, T. and Kheifets, S. and Medellin, D. and Raizen, M.G.}
     12631}
     12632@article{Kwon2010,
     12633  number = {328},
     12634  year = {2010},
     12635  title = {4D Electron Tomography},
     12636  pages = {1668-1673},
     12637  journal = {Science},
     12638  author = {Kwon, O.-H. and Zewail, A.H.}
     12639}
     12640@article{Brinkers2009,
     12641  number = {21},
     12642  year = {2009},
     12643  title = {The Persistence Length of Double Stranded {DNA} Determined Using Dark Field Tethered Particle Motion},
     12644  pages = {215105},
     12645  journal = {Journal of Chemical Physics},
     12646  volume = {130},
     12647  author = {Brinkers, S. and Dietrich, H.R.C. and Groote, F.H. de and Young, I.T. and Rieger, B.}
     12648}
     12649@article{Snijdervanderas2009,
     12650  number = {1},
     12651  year = {2009},
     12652  title = {A hybrid total internal reflection fluorescence and optical tweezers microscope to study cell adhesion and membrane protein dynamics of single living cells },
     12653  pages = {84-92},
     12654  journal = {Journal of Microscopy},
     12655  volume = {223},
     12656  author = {Snijder-van As, M.I. and Rieger, B. and Joosten, B. and Figdor, C. and Subramaniam, V. and Kanger, J.S.}
     12657}
     12658@article{Faas2009,
     12659  number = {4},
     12660  year = {2009},
     12661  title = {{DNA} deformations near charged surfaces: electron and atomic force microscopy views},
     12662  pages = {1148-1157},
     12663  journal = {Biophysical Journal},
     12664  volume = {97},
     12665  author = {Faas, F.G.A. and Rieger, B. and Vliet, L.J. van and Cherny, D.I.}
     12666}
     12667@article{Castaldo2008,
     12668  number = {6},
     12669  year = {2008},
     12670  title = {Sputtering limits versus signal-to-noise limits in the observation of {Sn} balls in a {Ga+} microscope},
     12671  pages = {2107-2115},
     12672  journal = {Journal of Vacuum Science and Technology B},
     12673  volume = {26},
     12674  author = {Castaldo, V. and  Hagen, C.W. Rieger, B. and Kruit, P.}
     12675}
     12676@article{Lidke2010,
     12677  year = {2010},
     12678  title = {{ERK} nuclear translocation is dimerization-independent but controlled by the rate of phosphorylation},
     12679  pages = {3092-3102},
     12680  journal = {Journal of Biological Chemistry},
     12681  volume = {285},
     12682  author = {Lidke, D.S. and Huang, F. and Post, J.N. and Rieger, B. and Thomas, J.L.and Pouyssegur, J. and Jovin, T.M. and Lenormand, P. }
     12683}
     12684@inbook{Hagen2008,
     12685  year = {2008},
     12686  title = {Single Molecule Dynamics in Life Sciences},
     12687  pages = {117-130},
     12688  editor = {Yanagida, T. and Ishii, Y.},
     12689  chapter = {Dynamics of membrane receptors: single molecule tracking of quantm dot liganded epidermal growth factor},
     12690  publisher = {Wiley},
     12691  author = {Hagen, G.M. and Lidke, K.A. and Rieger, B. and Lidke,  D.S. and Caarls, W. and  Arndt-Jovin, D.J. and Jovin, T.M.}
     12692}
     12693@article{Haider2010,
     12694  year = {2010},
     12695  title = {Information Transfer in a TEM Corrected for Spherical
     12696and Chromatic Aberration},
     12697  pages = {393-408},
     12698  journal = {Microscopy and Microanalysis},
     12699  volume = {16},
     12700  author = {Haider, M .and Hartel, P. and {M\"uller}, H. and Uhlemann, S. and Zach, J.}
     12701}
     12702@article{Borgnia2004,
     12703  year = {2004},
     12704  title = {Visualization of $\alpha$-helical features in a density map constructed using 9 molecular images of the {1.8MDa} icosahedral core of pyruvate dehydrogenase},
     12705  pages = {136-145},
     12706  journal = {Journal of Structural Biology},
     12707  volume = {147},
     12708  author = {Borgnia, M.J. and Shi, D. and Zhang, P. and Milne, J.L.S.}
     12709}
     12710@article{Dubochet1988,
     12711  year = {1988},
     12712  title = {Cryo-electron microscopy of vitrified specimens},
     12713  pages = {129-228},
     12714  journal = {Quarterly Review of Biophysics},
     12715  volume = {21},
     12716  author = {Dubochet, J. and Adrian, M. and Chang, J.-J. and Homo, J.-C. and Lepault, J. and McDowall, A.W.and Schultz, P.}
     12717}
     12718@article{Khursheed2007,
     12719  year = {2007},
     12720  title = {Redesign of the scanning electron microscope for parallel energy spectral acquisition},
     12721  pages = {151-157},
     12722  journal = {Ultramicroscopy},
     12723  volume = {108},
     12724  author = {Khursheed, A. and Hoang, H.Q.}
     12725}
     12726@article{Arslan2006,
     12727  year = {2006},
     12728  title = {Reducing the missing wedge: High-resolution dual axis tomography of inorganic materials},
     12729  pages = {944-1000},
     12730  journal = {Ultramicroscopy},
     12731  volume = {106},
     12732  author = {Arslan, I. and Tong, J.R. and Midgley, P.A.}
     12733}
     12734@article{Dierksen1992,
     12735  year = {1992},
     12736  title = {Towards automatic electron tomography},
     12737  pages = {71-87},
     12738  journal = {Ultramicroscopy},
     12739  volume = {40},
     12740  author = {Dierksen, K. and Typke, D. and Hegerl, R. and Koster, A.J. and Baumeister, W.}
     12741}
     12742@book{Born1999,
     12743  edition = {7th},
     12744  year = {1999},
     12745  title = {Principles of Optics},
     12746  publisher = {Cambridge University Press},
     12747  author = {Born, M. and Wolf, E.}
     12748}
     12749@article{Dyck1996,
     12750  year = {1996},
     12751  title = {Sub-{\aa}ngstr{\"o}m structure characterisation: the {Brite-Euram} route towarde one {\AA}ngstr{\"o}m},
     12752  pages = {1-15},
     12753  journal = {Ultramicroscopy},
     12754  volume = {64},
     12755  author = {Dyck, D. van and Lichte, H. and Mast, K.D. van der}
     12756}
     12757@article{Billinge2007,
     12758  year = {2007},
     12759  title = {The Problem with Determining Atomic Structure at the Nanoscale},
     12760  pages = {561-565},
     12761  journal = {Science},
     12762  volume = {316},
     12763  author = {Billinge, S.J.L. and Levin, I.}
     12764}
     12765@article{Stoeger2008,
     12766  year = {2008},
     12767  title = {Optical properties and bandgaps from low loss EELS: Pitfalls and solutions},
     12768  pages = {1092-1110},
     12769  journal = {Micron},
     12770  volume = {39},
     12771  author = {Stoeger-Pollach, M.}
     12772}
     12773@article{Kim1997a,
     12774  year = {1997},
     12775  title = {Performance of Zr/O/W Schottky emitters at reduced temperatures},
     12776  pages = {2284-2288},
     12777  journal = {Journal of Vaccum Science and Technology B},
     12778  volume = {15},
     12779  author = {Kim, H.S. and Yu, M.L. and Thomson, M.G.R. and Kratchmer, E. and Chang, T.H.P.}
     12780}
     12781@inproceedings{Mitterbauer2003a,
     12782  year = {2003},
     12783  title = {High energy resolution {EELS} using a monochromoized {200kV TEM}: Comparative investigation of titanum oxides},
     12784  booktitle = {Microscoc. Microanal.},
     12785  pages = {1-2},
     12786  volume = {9S3},
     12787  author = {Mitterbauer, C. and Kothleitner, G. and Hofer, F. and Tiemeijer, P.C. and Freitag, B.H. and Zandbergen, H.W.}
     12788}
     12789@article{Gyobu2004,
     12790  year = {2004},
     12791  title = {Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique},
     12792  pages = {325-333},
     12793  journal = {Journal of Structural Biology},
     12794  volume = {146},
     12795  author = {Gyobu, N. and Tani, K. and Hiroaki, Y. and Kamegawa, A. and Mitsuoka, K. and Fujiyoshi, Y.}
     12796}
     12797@article{Hebert2003,
     12798  year = {2003},
     12799  title = {A proposal for dichroic experiments in the electron microscope},
     12800  pages = {463-468},
     12801  journal = {Ultramicroscopy},
     12802  volume = {96},
     12803  author = {Hebert, C. and Schattschneider, P.}
     12804}
     12805@article{Oshima2010,
     12806  year = {2010},
     12807  title = {Direct imaging of lithium atoms in {$LiV_2O_4$} by spherical aberration-corrected electron microscopy},
     12808  pages = {1-5},
     12809  journal = {Journal of Electron Microscopy},
     12810  author = {Oshima, Y. and et al.}
     12811}
     12812@article{Ishitani2002,
     12813  number = {6},
     12814  year = {2002},
     12815  title = {Contrast-to-gradient method for the evaluation of image resolution in scanning electron microscopy},
     12816  pages = {369-382},
     12817  journal = {Journal of Electron Mircoscopy},
     12818  volume = {51},
     12819  author = {Ishitani, T. and Sato, M.}
     12820}
     12821@article{Ishitani2005,
     12822  number = {2},
     12823  year = {2005},
     12824  title = {Influence of random noise on the contrast-to-gradient image resolution in scanning electron microscopy},
     12825  pages = {85-97},
     12826  journal = {Journal of Electron Mircoscopy},
     12827  volume = {54},
     12828  author = {Ishitani, T. and Kamiya, C. and Sato, M.}
     12829}
     12830@article{Ishitani2004,
     12831  number = {3},
     12832  year = {2004},
     12833  title = {Contrast-to-gradient method for the evaluation of image resolution taking account of random noise in scanning electron microscopy},
     12834  pages = {245-255},
     12835  journal = {Journal of Electron Mircoscopy},
     12836  volume = {53},
     12837  author = {Ishitani, T. and Sato, M.}
     12838}
     12839@article{Loane1991,
     12840  year = {1991},
     12841  title = {Thermal vibrations in convergent-beam electron diffraction},
     12842  pages = {267-278},
     12843  journal = {Acta Crystallography},
     12844  volume = {A47},
     12845  author = {Loane, R.F. and Xu, P. and Slicox, J.}
     12846}
     12847@article{Zaneti2009,
     12848  year = {2009},
     12849  title = {Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging},
     12850  pages = {305-312},
     12851  journal = {Journal of Structural Biology},
     12852  volume = {168},
     12853  author = {Zaneti, G. and Riches, J.D. and Fuller, S.D. and Briggs, J.A.G.}
     12854}
     12855@article{Diez2006,
     12856  number = {2},
     12857  year = {2006},
     12858  title = {Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis},
     12859  pages = {195-205},
     12860  journal = {Journal of Strcutural Biology},
     12861  volume = {154},
     12862  author = {Diez, D.C. and Seybert, A. and Frangakis, A.S.}
     12863}
     12864@article{Diez2007,
     12865  year = {2007},
     12866  title = {Implementation and performance evaluation of reconstruction algorithms on graphics processors},
     12867  pages = {288-295},
     12868  journal = {Journal of Strcutural Biology},
     12869  volume = {157},
     12870  author = {Diez, C.D. and Mueller, H. and Frangakis, A.S.}
     12871}
     12872@article{Barth1996,
     12873  year = {1996},
     12874  title = {Addition of different contributions to the charged particle probe size},
     12875  pages = {101-109},
     12876  journal = {Optik},
     12877  volume = {101},
     12878  author = {Barth, J.E. and Kruit, P.}
     12879}
     12880@article{Uchida2010,
     12881  year = {2010},
     12882  title = {Generation of electron beams carrying orbital angular momentum},
     12883  journal = {Nature},
     12884  volume = {464},
     12885  author = {Uchida, M. and Tonomura, A.}
     12886}
     12887@article{Jacobsen2001,
     12888  number = {2},
     12889  year = {2001},
     12890  title = {Soft X-ray spectroscopy from image sequences with sub-100nm spatial resolution},
     12891  pages = {173-184},
     12892  journal = {Journal of Microscopy},
     12893  volume = {197},
     12894  author = {Jacobsen, C. and Wirick, S. and Flynn, G. and Zimba, C.}
     12895}
     12896@article{Hammel1995,
     12897  year = {1995},
     12898  title = {Optimum rotationally symmetric detector configurations for phase-contrast imaging in scanning transmission electron microscopy},
     12899  pages = {403-415},
     12900  journal = {Ultramicroscopy},
     12901  volume = {58},
     12902  author = {Hammel, M. and Rose, H.}
     12903}
     12904@article{Braat2005,
     12905  number = {12},
     12906  year = {2005},
     12907  title = {Extended {Nijboer-Zernike} approach to aberration and birefringence retrieval in a high-numerical-aperture optical system},
     12908  pages = {2635-26550},
     12909  journal = {Journal of the Optical Society of America A},
     12910  volume = {22},
     12911  author = {Braat, J.J.M. and Dirksen, P. and Janssen, A.J.E.M. and Haver, S. van and Nes, S. van de}
     12912}
     12913@article{Swanson2009,
     12914  year = {2009},
     12915  title = {A review of the cold-field electron cathode},
     12916  pages = {63-100},
     12917  journal = {Advances in Imaging and Electron Physics},
     12918  volume = {159},
     12919  author = {Swanson, L.W. and Schwind, G.A.}
     12920}
     12921@article{Nakanishi2005,
     12922  year = {2005},
     12923  title = {An expanded approach to noise reduction from high-resolution STEM images based on the maximum entropy method},
     12924  note = {accepted},
     12925  journal = {Ultramicroscopy},
     12926  author = {Nakanishi, N. and Kotaka, Y. and Yamazaki, T.}
     12927}
     12928@article{Carragher2000,
     12929  year = {2000},
     12930  title = {Leginon: an automated system for acquisition of images from vitrecus ice specimens},
     12931  pages = {33-45},
     12932  journal = {Journal of Structural Biology},
     12933  volume = {132},
     12934  author = {Carragher, B. and Kisseberth, N. and Kriegman, D. and Milligan, R.A. and Potter, C.S. and Pulokas, J. and Reilein, A.}
     12935}
     12936@article{Finn2000,
     12937  number = {24},
     12938  year = {2000},
     12939  title = {Escherichia coli {RNA} polymerase core and holoenzyme structures},
     12940  pages = {6833-6844},
     12941  journal = {EMBO Journal},
     12942  volume = {19},
     12943  author = {Finn, R.D. and Orlova, E.V. and Gowen, B. and Buck, M. and Heel, M. van}
     12944}
     12945@article{Rubenstein2007,
     12946  year = {2007},
     12947  title = {Structural analysis of membrane protein complexes by single particle electron microscopy},
     12948  pages = {409-416},
     12949  journal = {Methods},
     12950  volume = {41},
     12951  author = {Rubenstein, J.L.}
     12952}
     12953@article{Wang2007,
     12954  year = {2007},
     12955  title = {Probing the electronic structure of ZnO nanowires by valence electron energy loss spectroscopy},
     12956  pages = {346-353},
     12957  journal = {Micron},
     12958  volume = {38},
     12959  author = {Wang, J. and Li, Q. and Egerton, R.F.}
     12960}
     12961@article{Wang2004,
     12962  year = {2004},
     12963  title = {Off-axis electron holography with a dual-lens imaging system andits usefulness in 2-D potential mapping of semiconductor devices},
     12964  pages = {63-72},
     12965  journal = {Ultramicroscopy},
     12966  volume = {101},
     12967  author = {Wang, Y.Y. and Kawasaki, M. and Bruley, J. and Gribelyuk, M. and Domenicucci, A. and Gaudiello, J.}
     12968}
     12969@article{Wang2008,
     12970  year = {2008},
     12971  title = {Nanomaterial electronic structure investigation by valence electron energy loss spectroscopy - An example of doped ZnO nanowires},
     12972  pages = {703-708},
     12973  journal = {Micron},
     12974  volume = {39},
     12975  author = {Wang, J. and Li, Q. and Ronning, C. and Stichtenoth, D. and Muller, S. and Tang, D.}
     12976}
     12977@article{Okayama2005,
     12978  number = {4},
     12979  year = {2005},
     12980  title = {Reference sample for the evaluation of {SEM} image resolution at a high magnification - nanometer-scale {Au} particles on an {HOPG} substrate},
     12981  pages = {345-350},
     12982  journal = {Journal of Electron Mircoscopy},
     12983  volume = {54},
     12984  author = {Okayama, S. and Haraichi, S. and Matsuhata, H.}
     12985}
     12986@book{Slayter1992,
     12987  year = {1992},
     12988  title = {Ligth and Electron Microscopy},
     12989  address = {Cambridge, United Kingdom},
     12990  publisher = {Cambridge University Press},
     12991  author = {Slayter,E.M. and Slayter, H.S.}
     12992}
     12993@article{Ortalan2009,
     12994  year = {2009},
     12995  title = {Application of image processing to STEM tomography of low-contrast materials},
     12996  pages = {67-81},
     12997  journal = {Ultramicroscopy},
     12998  volume = {110},
     12999  author = {Ortalan, V. and Herra, M. and Morgan, D.G. and Browning, N.D.}
     13000}
     13001@article{Lazar2010,
     13002  year = {2010},
     13003  title = {Imaging, Core-Loss, and Low-Loss Electron-Energy-Loss Spectroscopy Mapping in Aberration-Corrected STEM},
     13004  pages = {1-9},
     13005  journal = {Microscopy and Microanalysis},
     13006  volume = {16},
     13007  author = {Lazar, S. and Shao, Y. and Gunawan, L. and Nechache, R. and Pignolet, A. and Botton, G.A.}
     13008}
     13009@article{Takaoka2006,
     13010  year = {2006},
     13011  title = {Observations of unstained biological specimens using a low-energy, high-resolution STEM},
     13012  pages = {157-163},
     13013  journal = {Journal of Electron Microscopy},
     13014  volume = {55},
     13015  author = {Takaoka, A. and Hasegawa, T.}
     13016}
     13017@article{Batson2002,
     13018  year = {2002},
     13019  title = {Sub-{\AA}ngstrom resolution using aberration corrected electron optics},
     13020  pages = {617-622},
     13021  journal = {Nature},
     13022  volume = {418},
     13023  author = {Batson, P.E. and Dellby, N. and Krivanek, O.L.}
     13024}
     13025@article{Batson2006,
     13026  year = {2006},
     13027  title = {Characterizing probe performance in the aberration corrected {STEM}},
     13028  pages = {1104-1114},
     13029  journal = {Ultramicroscopy},
     13030  volume = {106},
     13031  author = {Batson, P.E.}
     13032}
     13033@article{Wang2007a,
     13034  year = {2007},
     13035  title = {Local electronic structure and luminescence properties of Er doped ZnO nanowires},
     13036  pages = {221917},
     13037  journal = {Applied Physics Letters},
     13038  volume = {89},
     13039  author = {Wang, J. and Zhou, M.J. and Hark, S.K. and Li, Q.}
     13040}
     13041@article{Eisebit2004,
     13042  year = {2004},
     13043  title = {Lensless imaging of magnetic nanostructures by {X-ray} spectro-holography},
     13044  pages = {885-888},
     13045  journal = {Nature},
     13046  volume = {432},
     13047  author = {Eisebit, S. and {J\"uning}, J. and Schlotter, W.F. and {L\"orgen}, M. and Hellwig, O. and Eberhardt, W. and {St\"ohr}, J.}
     13048}
     13049@phdthesis{Tuggle1984,
     13050  year = {1984},
     13051  title = {Emission Characteristics and Electron optical properties of the ZrO/W point cathode},
     13052  address = {Oregon State University},
     13053  school = {Oregon, USA},
     13054  author = {Tuggle, D.W.}
     13055}
     13056@article{Cowley1959a,
     13057  year = {1959},
     13058  title = {The Scattering of Electrons by Atoms and Crystals. {III.} {The} Single-Crytal Diffraction Patterns},
     13059  pages = {360-368},
     13060  journal = {Acta Crystallography},
     13061  volume = {12},
     13062  author = {Cowley, J.M. and Moodie, A.F.}
     13063}
     13064@article{Harrach2009,
     13065  year = {2009},
     13066  title = {Development of the 300-kV Vacuum Generator STEM (1985-1996)},
     13067  pages = {287-322},
     13068  journal = {Advances in Imaging and Electron Physics},
     13069  volume = {159},
     13070  author = {Harrach, H.S. von}
     13071}
     13072@article{Plaisier2007,
     13073  year = {2007},
     13074  title = {Cyclops: New modular software suite for cryo-EM},
     13075  pages = {19-27},
     13076  journal = {Journal of Strcutural Biology},
     13077  volume = {157},
     13078  author = {Plaisier, J.R. and Jiang, L. and Abrahams, J.P.}
     13079}
     13080@article{Benthem2006,
     13081  year = {2006},
     13082  title = {Three-dimensional {ADF} imaging of individual atoms by through-focal series scanning transmission electron microscopy},
     13083  pages = {1062-1068},
     13084  journal = {Ultramicroscopy},
     13085  volume = {106},
     13086  author = {Benthem, K. van and Lupini, A.R. and Oxley, M.P. and Findlay, S.D. and Alleen, L.J. and Pennycook, S.J.}
     13087}
     13088@misc{Rieger2009,
     13089  year = {2009},
     13090  title = {Method for determining the aberration coefficients of the aberration function of a particle-opticle lens},
     13091  howpublished = {EP1804272},
     13092  author = {Zande, M. van der and Kok, C. and Rieger, B.},
     13093  organization = {FEI Company}
     13094}
     13095@article{Fujita2005,
     13096  number = {5},
     13097  year = {2005},
     13098  title = {A new evaluation method of electron optical performance of high beam current probe forming systems},
     13099  pages = {413-427},
     13100  journal = {Journal of Electron Mircoscopy},
     13101  volume = {54},
     13102  author = {Fujita, S. and Shimoyama, H.}
     13103}
     13104@article{Heel1997,
     13105  year = {1997},
     13106  title = {Angular reconstitution in three-dimensional electron microscopy: historical and theoretical aspects},
     13107  pages = {195-210},
     13108  journal = {Scanning Microscopy},
     13109  volume = {11},
     13110  author = {Heel, M. van and Orlova, E.V. and Harauz, G. and Stark, H. and Dube, P. and Zemlin, F. and Schatz, M.}
     13111}
     13112@article{Sawada2010,
     13113  year = {2010},
     13114  title = {Higher-order aberration corrector for an image-forming system in a transmission electron microscope},
     13115  pages = {1-4},
     13116  journal = {Ultramicroscopy},
     13117  author = {Sawada, H. and Sasaki, T. and Hosokawa, F. and Yuasa, S. and Terao, M. and Kawazoe, M. and Nakamichi, T. and Kaneyama, T. and Kondo. Y. and Kimoto, K. and Suenaga, K.}
     13118}
     13119@article{Rau1999,
     13120  number = {12},
     13121  year = {1999},
     13122  title = {Two-Dimensional Mapping of the Electrostatic Potential in Transistors by Electron Holography},
     13123  pages = {2614-2617},
     13124  journal = {Physical Review Letters},
     13125  volume = {82},
     13126  author = {Rau, W.D. and Schwander, P. and Baumann, F.H. and Hoeppner, W. and Ourmazd, A.}
     13127}
     13128@article{Kishita2009,
     13129  year = {2009},
     13130  title = {Development of an analytical environmental TEM system and its application},
     13131  pages = {331-339},
     13132  journal = {Journal of Electron Microscopy},
     13133  volume = {58},
     13134  author = {Kishita, K. and Sakai, H. and Tanaka, H. and Saka, H. and Kuroda, K. and Sakamoto, M. and Watabe, A. and Kamnio, T.}
     13135}
     13136@article{Bartle2008,
     13137  year = {2008},
     13138  title = {Energy width reduction using an electrostatic Omega-monochromator},
     13139  pages = {479},
     13140  journal = {Physics Procedia},
     13141  volume = {1},
     13142  author = {Bartle, J. and Plies, E.}
     13143}
     13144@article{Armstrong2007,
     13145  year = {2007},
     13146  title = {Practical considerations for high spatial and temporal resolution dynamic transmission electron microscopy},
     13147  pages = {356-367},
     13148  journal = {Ultramicroscopy},
     13149  volume = {107},
     13150  author = {Armstrong, M. R. and Boyden, K. and Browning, N.D. and Campbell, G.H. and Colvin, J.D. and DeHope, W.J. and Frank, A.M. and hartemann, F. and Kim, J.S. and King, W.E. and LaGrange, T.B. and Pyke, B.J. and Reed, B.W. and Shuttleswoth, M. and Stuart, B.C. and Torralava, B.R.}
     13151}
     13152@article{Lichte1993,
     13153  year = {1993},
     13154  title = {Parameters for gih-resolution electron holography},
     13155  pages = {15-20},
     13156  journal = {Ultramicroscopy},
     13157  volume = {51},
     13158  author = {Lichte, H.}
     13159}
     13160@article{Blom2006,
     13161  year = {2006},
     13162  title = {Early Results from an Aberration-Corrected {JEOL 2200FS} {STEM/TEM} at {Oak} {Ridge} {National} {Laboratory}},
     13163  pages = {483-491},
     13164  journal = {Microscopy and Microanalysis},
     13165  volume = {12},
     13166  author = {Blom, D.A. and Allard, L.F. and Mishina, S. and O'Keefe, M.A.}
     13167}
     13168@article{Zach2009,
     13169  year = {2009},
     13170  title = {Chromatic correction: a revolution in electron microscopy?},
     13171  pages = {3699-3707},
     13172  journal = {Philosophical Transactions of the Royal Society},
     13173  volume = {367},
     13174  author = {Zach2009}
     13175}
     13176@article{Arslan2005,
     13177  year = {2005},
     13178  title = {Embedded nanostructures revealed in three dimensions},
     13179  pages = {2195-2198},
     13180  journal = {Sciences},
     13181  volume = {309},
     13182  author = {Arslan, I. and Yates, T.J.V. and Browning, N.D. and Midgley, P.A.}
     13183}
     13184@article{Urban2008,
     13185  year = {2008},
     13186  title = {Studying Atomic Structures by Aberration-Corrected Transmission Electron Microscopy},
     13187  pages = {506-510},
     13188  journal = {Science},
     13189  volume = {321},
     13190  author = {Urban, K.}
     13191}
     13192@article{Christenson1988,
     13193  year = {1988},
     13194  title = {Skew thoughts on parallelism},
     13195  pages = {113-132},
     13196  journal = {Ultramicroscopy},
     13197  volume = {26},
     13198  author = {Christenson, K.K. and Eades, J.A.}
     13199}
     13200@article{Lupini2003,
     13201  year = {2003},
     13202  title = {Localization in Elastic and Inelastic Scattering},
     13203  pages = {313-322},
     13204  journal = {Ultramicroscopy},
     13205  volume = {96},
     13206  author = {Lupini, A.R. and Pennycook, S.J.}
     13207}
     13208@article{Loane1992,
     13209  year = {1992},
     13210  title = {Incoherent imaging of zone axis crystals with {ADF STEM}},
     13211  pages = {121-138},
     13212  journal = {Ultramicroscopy},
     13213  volume = {40},
     13214  author = {Loane, R.F. and Xu, P. and Slicox, J.}
     13215}
     13216@phdthesis{Lupini2001,
     13217  year = {2001},
     13218  title = {Aberration correction in {STEM}},
     13219  note = {Copy Bernd Rieger},
     13220  address = {Cambridge, United Kingdom},
     13221  school = {University of Cambridge},
     13222  author = {Lupini, A.R.}
     13223}
     13224@article{Deptuch2007,
     13225  year = {2007},
     13226  title = {Direct electron imaging in electron microscopy with monolithic active pixel sensors},
     13227  pages = {674-684},
     13228  journal = {Ultramicroscopy},
     13229  volume = {107},
     13230  author = {Deptuch, G. and Besson, A. and Rehak, P. and Szelezniak, M. and Wall, J. and Winter, M. and Zhu, Y.}
     13231}
     13232@article{Yamasaki2005,
     13233  number = {2},
     13234  year = {2005},
     13235  title = {First experiments of selected area nano-diffraction from semiconductor interfaces using a spherical aberration corrected {TEM}},
     13236  pages = {123-126},
     13237  journal = {Journal of Electron Microscopy},
     13238  volume = {54},
     13239  author = {Yamasaki, J. and Sawada, H. and Tanaka, N.}
     13240}
     13241@article{Rodenburg2006,
     13242  year = {2006},
     13243  title = {Transmission microscopy without lenses for objects of unlimited size},
     13244  pages = {227-231},
     13245  journal = {Ultramicroscopy},
     13246  volume = {107},
     13247  author = {Rodenburg, J.M. and Hurst, A.C. and Cullis, A.G.}
     13248}
     13249@article{Stewart2004,
     13250  year = {2004},
     13251  title = {Noise bias in the refinement of structures deried from single particles},
     13252  pages = {67-84},
     13253  journal = {Ultramicroscopy},
     13254  volume = {102},
     13255  author = {Stewart, A. and Grigorieff, N.}
     13256}
     13257@inproceedings{CheynetXXXX,
     13258  title = {{VEELS} experiments using a monochromated {FEG-TEM}},
     13259  pages = {1-2},
     13260  author = {Cheynet, M.C. and Tichelaar, F.R. and Lazar, S. and Jullian, S. and Pantel, R.}
     13261}
     13262@article{Fan1996,
     13263  number = {3},
     13264  year = {1996},
     13265  title = {A new electron-optical mode for high contrast imaging and online stereo observation in {TEM}},
     13266  pages = {137-146},
     13267  journal = {Journal of Microscopy},
     13268  volume = {2},
     13269  author = {Fan, G.Y. and Young, S.J. and Deerinck, T. and Ellisman, M.H.}
     13270}
     13271@inproceedings{SaorzanoXXXX,
     13272  title = {Transfer function restoration in {3D} electron microscopy via iterative data refinement},
     13273  pages = {1-4},
     13274  author = {Sorzano, C.O.S. and {Fern\'andez}, J.J. and Marabini, R. and Herman, G.T. and Censor, Y. and Carazo, J.M.}
     13275}
     13276@article{Miao2002,
     13277  year = {2002},
     13278  title = {Atomic Resolution Three-Dimensional Electron Diffraction Microscopy},
     13279  journal = {Physical Review Letters},
     13280  volume = {89},
     13281  author = {Miao, J. and Ohsuna, T. and Terasaki, O. and Hodgson, K.O. and O'Keefe, M.A.}
     13282}
     13283@article{Lentzen2004,
     13284  year = {2004},
     13285  title = {The tuning of a {Zernike} phase plate with defocus and variable spherical aberration and its use in {HRTEM} imaging},
     13286  pages = {211-220},
     13287  journal = {Ultramicroscopy},
     13288  volume = {99},
     13289  author = {Lentzen, M.}
     13290}
     13291@article{Lentzen2002,
     13292  year = {2002},
     13293  title = {High-resolution imaging with an aberration-corrected transmission electron microscope},
     13294  pages = {233-242},
     13295  journal = {Ultramicroscopy},
     13296  volume = {92},
     13297  author = {Lentzen, M. and Jahnen, B. and Jia, C.L. and Thust, A. and Tillmann, K. and Urban, K.}
     13298}
     13299@article{Cowley1957,
     13300  year = {1957},
     13301  title = {The Scattering of Electrons by Atoms and Crystals. {I.} {A} New Theorectial Approach},
     13302  pages = {609-620},
     13303  journal = {Acta Crystallography},
     13304  volume = {10},
     13305  author = {Cowley, J.M. and Moodie, A.F.}
     13306}
     13307@article{Sander2005,
     13308  year = {2005},
     13309  title = {Advantages of CCD detectors for de novo three-dimensional structure determination in single-particle electron microscopy},
     13310  pages = {92-105},
     13311  journal = {Journal of Structural Biology},
     13312  volume = {151},
     13313  author = {Sander, B. and Golas, M.M. and Stark, H.}
     13314}
     13315@article{Alloyeau2009,
     13316  year = {2009},
     13317  title = {Atomic-resolution three-dimensional imaging of germanium self-interstitials near a surface: Aberration-corrected transmission electron microscopy},
     13318  pages = {014114},
     13319  journal = {Physical Review B},
     13320  volume = {80},
     13321  author = {Alloyeau, D. and Freitag, B. and Dag, S. and Wang, L.W. and Kisielowski, C.}
     13322}
     13323@article{Fujiyoshi1998,
     13324  year = {1998},
     13325  title = {The structural study of membranse proteins by electron crystallography},
     13326  pages = {25-80},
     13327  journal = {Adv. Biophysics},
     13328  volume = {35},
     13329  author = {Fujiyoshi, Y.}
     13330}
     13331@article{Cowley1959,
     13332  year = {1959},
     13333  title = {The Scattering of Electrons by Atoms and Crystals. {II.} {The} Effect of Finite Source Size},
     13334  pages = {353-360},
     13335  journal = {Acta Crystallography},
     13336  volume = {12},
     13337  author = {Cowley, J.M. and Moodie, A.F.}
     13338}
     13339@article{Baba2001,
     13340  year = {2001},
     13341  title = {An auto-tunning method for focusing and astigmatism correction in HAADF-STEM, based on the image contrast transfer function},
     13342  pages = {163-176},
     13343  journal = {Journal of Electron Micrsocopy},
     13344  volume = {50},
     13345  author = {Baba, N. Teryama, K. and Yoshimizu, T. and Ichise, N. and Tanaka, N.}
     13346}
     13347@article{Miyashita2004,
     13348  number = {6},
     13349  year = {2004},
     13350  title = {Direct observation of electrostatic microfields by four-electron-wave interference using two electron biprisms},
     13351  pages = {577-582},
     13352  journal = {Journal of Electron Microscopy},
     13353  volume = {53},
     13354  author = {Miyashita, K. and Yamamoto, K. and Hirayama, T. and Tanji, T.}
     13355}
     13356@article{Barthel2008,
     13357  year = {2008},
     13358  title = {Quantification of the Information Limit of Transmission Electron Microscopes},
     13359  pages = {200801},
     13360  journal = {Physical Review Letters},
     13361  volume = {101},
     13362  author = {Barthel, J. and Thust, A.}
     13363}
     13364@inproceedings{Barthel2005,
     13365  year = {2005},
     13366  title = {Ultra-Precise Measurement of Optical Aberrations for Sub-\AA ngstrom {HRTEM}},
     13367  booktitle = {{Dreil\"andertagung}, 28 August - 2 September, Davos, Zwitserland},
     13368  author = {Barthel, J. and Thust, A.}
     13369}
     13370@article{Winkler2007,
     13371  year = {2007},
     13372  title = {3D reconstruction and processing of volumetric data in cryo-electron tomography},
     13373  pages = {126-137},
     13374  journal = {Journal of Strcutural Biology},
     13375  volume = {157},
     13376  author = {Winkler, H.}
     13377}
     13378@article{Kohl1985,
     13379  year = {1985},
     13380  title = {Theory of image formation by inelastically scattered electrons in the electron microscope},
     13381  pages = {173-224},
     13382  journal = {Advances in Electronics and Electron Physics},
     13383  volume = {65},
     13384  author = {Kohl, H. and Rose, H.}
     13385}
     13386@article{Henderson1992,
     13387  year = {1992},
     13388  title = {Image contrast in high-resolution electron microscopy of biological macromlecules: {TMV} in ice},
     13389  pages = {1-18},
     13390  journal = {Ultramicroscopy},
     13391  volume = {46},
     13392  author = {Henderson, R.}
     13393}
     13394@article{Einspahr2006,
     13395  year = {2006},
     13396  title = {Prospects for {3D}, nanometer-resolution imaging by confocal {STEM}},
     13397  pages = {1041-1052},
     13398  journal = {Ultramicroscopy},
     13399  volume = {106},
     13400  author = {Einspahr, J.J. and Voyles, P.M.}
     13401}
     13402@article{Bohm2000,
     13403  year = {2000},
     13404  title = {Toward detecting and identifying macromolecules in a cellular context: Template matching applied to electron tomograms},
     13405  pages = {14245-14250},
     13406  journal = {Biophysical Journal},
     13407  volume = {97},
     13408  author = {{B\"ohm}, J. and Frangakis, A.S. and Hegerl, R. and Nickell, S. and Typke, D. and Baumeister, W.}
     13409}
     13410@article{Zhou1996,
     13411  number = {1},
     13412  year = {1996},
     13413  title = {{CTF} Determination of Images of Ice-Embedded Single Particles Using from Cryoelectron Micrographs to Subnanometer Resolution},
     13414  pages = {216-22},
     13415  journal = {Journal of Strcutural Biology},
     13416  volume = {116},
     13417  author = {Zhou, Z.H. and Hardt, S. and Wang, B. and Sherman, M.B. and Jakana, J. and Chiu, W.}
     13418}
     13419@article{Mitome2009,
     13420  year = {2009},
     13421  title = {Quantitativeness of phase measurement by transport of intensity equation},
     13422  pages = {1-9},
     13423  journal = {Journal of electron microscopy},
     13424  author = {Mitome, M. and Ishizuka, K. and Bando, Y.}
     13425}
     13426@article{Schiske1956,
     13427  year = {1956},
     13428  title = {Die untere Grenze des Farbfehlers magnetischer Linsen bei vorgeschriebener Maximalfeldstaerke},
     13429  pages = {502-503},
     13430  journal = {Optik},
     13431  volume = {13},
     13432  author = {Schiske, P.}
     13433}
     13434@article{Edgcombe1999,
     13435  year = {1999},
     13436  title = {Robust optimization for magnetic lens design},
     13437  pages = {306-309},
     13438  journal = {Nuclear Instruments and Methods in Physics Research A},
     13439  volume = {427},
     13440  author = {Edgcombe, C.J. and Lupini, A.R. and Taylor, J.H.}
     13441}
     13442@article{Abajo2010,
     13443  year = {2010},
     13444  title = {Optical excitations in electron microscopy},
     13445  pages = {209-275},
     13446  journal = {REVIEWS OF MODERN PHYSICS},
     13447  volume = {82},
     13448  author = {Abajo, F.J. Garcia de}
     13449}
     13450@article{Chang2006,
     13451  year = {2006},
     13452  title = {On the importance of fifth-order spherical aberration for a fully corrected electron microscope},
     13453  pages = {in press},
     13454  journal = {Ultramicroscopy},
     13455  author = {Chang, L.Y. and Kirkland, A.I. and Tichmarsh, J.M.}
     13456}
     13457@article{Treacy2007,
     13458  year = {2007},
     13459  title = {When structural noise is the signal: Speckle statistics in fluctuation electron microscopy},
     13460  pages = {166-171},
     13461  journal = {Ultramicroscopy},
     13462  volume = {107},
     13463  author = {Treacy, M.M.J.}
     13464}
     13465@article{Yi2010,
     13466  year = {2010},
     13467  title = {Flexible formation of coherent probes on an aberrationcorrected STEM with three condensers},
     13468  pages = {1-7},
     13469  journal = {Journal of Electron Microscopy},
     13470  author = {Yi, F. and Tiemeijer, P. and Voyles, P.M.}
     13471}
     13472@article{Erni2005,
     13473  year = {2005},
     13474  title = {Analysis of extraterrestrial particles using monochromated electron energy-loss spectroscopy},
     13475  pages = {369-379},
     13476  journal = {Micron},
     13477  volume = {36},
     13478  author = {Erni, R. and Browning, N.D. and Dia, Z.R. and Bradley, J.P.}
     13479}
     13480@article{Erni2006,
     13481  year = {2006},
     13482  title = {Atomic Scale Analysis of Planar Defects in Polycrystalline Diamond},
     13483  pages = {492-497},
     13484  journal = {Microscopy and Microanalysis},
     13485  volume = {12},
     13486  author = {Erni, R. and Freitag, B. and Hartel, P. and {M\"uller}, H. and Tiemeijer, P. and Stam, M. van der and Stekelenburg, M. and Hubert, D. and Specht, P. and Garibay-Febles, V.}
     13487}
     13488@article{Erni2007,
     13489  year = {2007},
     13490  title = {Quantification of the size-dependent energy gap of individual {CdSe} quantum dots by valence electron energy-loss spectroscopy},
     13491  pages = {267-273},
     13492  journal = {Ultramicroscopy},
     13493  volume = {107},
     13494  author = {Erni, R. and Browning, N.D.}
     13495}
     13496@article{Peng2004,
     13497  year = {2004},
     13498  title = {{HAADF-STEM} Imaging With Sub-{\AA}ngstrom Probes, a full Bloch wave analysis},
     13499  pages = {257},
     13500  journal = {Journal of Electron Microscopy},
     13501  volume = {53},
     13502  author = {Peng, Y. and Nellist, P.D. and Pennycook, S.J.}
     13503}
     13504@article{Erni2008,
     13505  year = {2008},
     13506  title = {Prospects for analyzing the electronic properties in nanoscale systems by {VEELS}},
     13507  pages = {270-276},
     13508  journal = {Ultramicroscopy},
     13509  volume = {108},
     13510  author = {Erni, R. and Lazar, S. and Browning, N.D.}
     13511}
     13512@article{Erni2009,
     13513  year = {2009},
     13514  title = {Atomic-resolution Imaging with sub-50-pm Electron Probe},
     13515  pages = {096101},
     13516  journal = {Physical Review Letters},
     13517  volume = {102},
     13518  author = {Erni, R. and Rossell, M.D. and Kisielowski, C. and Dahmen, U.}
     13519}
     13520@article{Malac2007,
     13521  year = {2007},
     13522  title = {Imaging of radiation-sensitive samples in transmission electron microscopes equipped with Zernike phase plates},
     13523  pages = {126-140},
     13524  journal = {Ultramicroscopy},
     13525  volume = {108},
     13526  author = {Malac, M. and Beleggia, M. and Egerton, R. and Zhu, Y.}
     13527}
     13528@article{Bron1999,
     13529  year = {1999},
     13530  title = {The 9 {\AA} projection structure of cytochrome $b_6f$ complex determined by electron crystallography},
     13531  pages = {117-126},
     13532  journal = {Journal of Molecular Biology},
     13533  volume = {287},
     13534  author = {Bron, P. and {Lacap\'ere}, J.-J. and Breyton, C. and Mosser, G.}
     13535}
     13536@inproceedings{Kothleitner2003a,
     13537  year = {2003},
     13538  title = {First Applications of Electron Energy-Loss Spectroscopy with High Energy Resolution},
     13539  booktitle = {Mat. Res. Soc. Symp. Proc.},
     13540  pages = {27-32},
     13541  volume = {738},
     13542  author = {Kothleitner, G. and Mitterbauer, C. and Grogger, W. and Zandbergen, H. and Tiemeijer, P.C. and Freitag, B. and Barfels, M. and Hofer, F.}
     13543}
     13544@article{Saxton1998,
     13545  year = {1998},
     13546  title = {Quantitative comparision of images and transforms},
     13547  pages = {52-60},
     13548  journal = {Journal of Microscopy},
     13549  volume = {1-2},
     13550  author = {Saxton, W.O.}
     13551}
     13552@article{Kothleitner1998,
     13553  number = {5},
     13554  year = {1998},
     13555  title = {Optimization of the Signal to Noise Ratio in {EFTEM} Elemental Maps with Regard to Different Eonization Edge Types},
     13556  pages = {349-357},
     13557  journal = {Micron},
     13558  volume = {29},
     13559  author = {Kothleitner, G. and Hofer, F.}
     13560}
     13561@article{Dwyer2007,
     13562  year = {2007},
     13563  title = {Electron nanodiffraction using sharply focused parallel probes},
     13564  pages = {151104},
     13565  journal = {Applied Physics Letters},
     13566  volume = {90},
     13567  author = {Dwyer, C. and Kirkland, A.I. and Hartel, P. and {M\"uller}, H. and Haider, M.}
     13568}
     13569@article{Dwyer2008,
     13570  year = {2008},
     13571  title = {Method to measure spatial coherence of subangstrom electron beams},
     13572  pages = {021115},
     13573  journal = {Applied Physics Letters},
     13574  volume = {93},
     13575  author = {Dwyer, C. and Erni, R. and Etheridge, J.}
     13576}
     13577@book{Reisner,
     13578  edition = {73},
     13579  year = {1989},
     13580  title = {An early history of the electron microsope in the united states},
     13581  note = {sold out, reprint 2006},
     13582  publisher = {Adavances in electronics and electron physics},
     13583  author = {Reisner, J.H.}
     13584}
     13585@article{Bottcher1995,
     13586  year = {1995},
     13587  title = {Electron cryo-micrsocopy of graphite in amorphous ice},
     13588  pages = {417-424},
     13589  journal = {Ultramicroscopy},
     13590  volume = {58},
     13591  author = {{B\"ottcher}, B.}
     13592}
     13593@article{Coene1992,
     13594  number = {26},
     13595  year = {1992},
     13596  title = {Phase retrieval through focus variation for ultra-resolution in field-emission transmission electron microscopy},
     13597  pages = {3743-3749},
     13598  journal = {Physical Review Letters},
     13599  volume = {69},
     13600  author = {Coene, W.M.J. and Jansen, G. and Beeck, M. op de and Dyck, D. van}
     13601}
     13602@article{Atsuzawa2009,
     13603  year = {2009},
     13604  title = {High-contrast imaging of plastic-embedded tissues by phase contrast electron microscopy},
     13605  pages = {35-45},
     13606  journal = {Journal of Electron Microscopy},
     13607  volume = {58},
     13608  author = {Atusuzawa, K. and et al.}
     13609}
     13610@article{Bailey2004,
     13611  year = {2004},
     13612  title = {Performance Evaluation of a Transmission Scintillator-Based Lens-Coupled 4K CCD Camera for Use in Low-Dose Electron Cryo-Microscopy},
     13613  pages = {S2},
     13614  journal = {Mircoscopy Mircoanal},
     13615  volume = {10},
     13616  author = {Bailey, B. and Agard, D.A. and Sedat, J.W. and Barfels, M. and Chao, H. and Mooney, P.E.}
     13617}
     13618@article{Muto2006,
     13619  number = {4},
     13620  year = {2006},
     13621  title = {Spectral restoration and energy resolution improvement of electron energy-loss spectra by Pixon reconstruction: {I. Principle} and test examples},
     13622  pages = {215-223},
     13623  journal = {Journal of Electron Microscopy},
     13624  volume = {55},
     13625  author = {Muto, S. and Pueter, R.C. and Tatsumi, K.}
     13626}
     13627@article{Alem2009,
     13628  year = {2009},
     13629  title = {Atomically thin hexagonal boron nitride probed by ultrahigh-resolution transmission electron microscopy},
     13630  pages = {155425},
     13631  journal = {Physics Review B},
     13632  volume = {80},
     13633  author = {Alem, N. and Erni, R. and Kisielowski, C. and Rosell, M.D. and Gannett, W. and Zettl, A.}
     13634}
     13635@article{Meyer2008a,
     13636  year = {2008},
     13637  title = {Direct Imaging of Lattice Atoms and Topological Defects in Graphene Membranes},
     13638  pages = {3582-3586},
     13639  journal = {Nano Letters},
     13640  volume = {8},
     13641  author = {Meyer, J.C. and Kisielowski, C. and Erni, R. and Rossell, M.D. and Crommie, M.F. and Zettl, A.}
     13642}
     13643@article{Ishizuka1980,
     13644  year = {1980},
     13645  title = {Contrast transfer of crystal images in {TEM}},
     13646  pages = {55-65},
     13647  journal = {Ultramicroscopy},
     13648  volume = {5},
     13649  author = {Ishizuka, K.}
     13650}
     13651@article{Jia2008,
     13652  year = {2008},
     13653  title = {Atomic-scale study of electric dipoles near charged and uncharged domain walls in ferroelectric films},
     13654  pages = {57-61},
     13655  journal = {Nature},
     13656  volume = {7},
     13657  author = {Jia, C.-L. and Mi, S.-B. and Urban, K. and Verjoiu, I. and Alexe, M. and Hesse, D.}
     13658}
     13659@article{Gonen2004,
     13660  year = {2004},
     13661  title = {Aquaporin-O membrane junctions reveal the structure of a closed water pore},
     13662  pages = {193-196},
     13663  journal = {Nature},
     13664  volume = {429},
     13665  author = {Gonen, T. and Sliz, P. and Kistler, J. and Cheng, Y. and Walz, T.}
     13666}
     13667@article{Jia2004,
     13668  year = {2004},
     13669  title = {High-Resolution Transmission Electron Microscopy Using Negative Spherical Aberration},
     13670  pages = {174-184},
     13671  journal = {Microscopy and Mircoanalysis},
     13672  volume = {10},
     13673  author = {Jia, C.-L. and Lentzen, M. and Urban, K.}
     13674}
     13675@article{Ishitani2002a,
     13676  number = {4},
     13677  year = {2003},
     13678  title = {A Method for Personal Expertise-Independent Evaluation of Image Resolution in Scanning Electron Microscopy},
     13679  pages = {191-203},
     13680  journal = {Scanning},
     13681  volume = {24},
     13682  author = {Ishitani, T. and Sato, M.}
     13683}
     13684@article{Oho2001,
     13685  number = {5},
     13686  year = {2001},
     13687  title = {Strategies for Optimum Use of Superposition Diffractogram in Scanning Electron Microscopy},
     13688  pages = {351-356},
     13689  journal = {Scanning},
     13690  volume = {23},
     13691  author = {Oho, E. and Toyomura, K.}
     13692}
     13693@article{Kazemian2006,
     13694  year = {2006},
     13695  title = {Quantitative secondary electron energy filtering in a scanning electron microscope and its applications},
     13696  pages = {140-150},
     13697  journal = {Ultramicroscopy},
     13698  volume = {107},
     13699  author = {Kazemian, P. and Mentink, S.A.M. and Rodenburg, C. and Humphreys, C.J.}
     13700}
     13701@article{Rau1996,
     13702  year = {1996},
     13703  title = {An Annular Toroidal Backscattered Electron Energy Analyser for Use in Scanning Electron Microscopy},
     13704  pages = {556-561},
     13705  journal = {Scanning},
     13706  volume = {18},
     13707  author = {Rau, E.I. and Robinson, V.N.E.}
     13708}
     13709@article{Bronsgeest2007,
     13710  number = {6},
     13711  year = {2007},
     13712  title = {Extracting the Boersch effect contribution from experimental energy spread measurements for Schottky electron emitters},
     13713  pages = {2049-254},
     13714  journal = {Journal of Vaccuum Science Technology B},
     13715  volume = {25},
     13716  author = {Bronsgeest, M.S. and Barth, J.E. and Schwind, G.A. and Swanson, L.W. and Kruit, P.}
     13717}
     13718@article{Nellist1999,
     13719  year = {1999},
     13720  title = {Incoherent imaging using dynamically scattered coherent electrons},
     13721  pages = {111-124},
     13722  journal = {Ultramicroscopy},
     13723  volume = {78},
     13724  author = {Nellist, P.D. and Pennycook, S.J.}
     13725}
     13726@article{Nellist1998,
     13727  number = {19},
     13728  year = {1998},
     13729  title = {Subangstrom Resolution by Underfocused Incoherent Transmission Electron Microscopy},
     13730  pages = {4156-4159},
     13731  journal = {Physical Review Letters},
     13732  volume = {81},
     13733  author = {Nellist, P.D. and Pennycook, S.J.}
     13734}
     13735@article{Yonekura2006,
     13736  year = {2006},
     13737  title = {Electron energy filtering significantly improves amplitude contrast of frozen-hydrated protein at 300 kV},
     13738  pages = {524-536},
     13739  journal = {Journal of Structural Biology},
     13740  volume = {156},
     13741  author = {Yonekura, K. and Braunfeld, M.B. and Mari-Yonekura, S. and Agard, D.A.}
     13742}
     13743@article{Park2009,
     13744  year = {2009},
     13745  title = {4D ultra fast electron microscopy: Imaging of atomic motions, acoustic resonances, and moire fringe dynamics},
     13746  pages = {7-19},
     13747  journal = {Ultramicroscopy},
     13748  volume = {110},
     13749  author = {Park, H.S. and Baskin, J.S. and Barwick, B. and Kwon, O.H. and Zewail, A.H.}
     13750}
     13751@article{Bahn2008,
     13752  number = {6},
     13753  year = {2008},
     13754  title = {Range of validity of field emission equations},
     13755  pages = {2080-2084},
     13756  journal = {Journal of Vaccuum Science Technology B},
     13757  volume = {26},
     13758  author = {Bahn, A.S. and J.E. and Schwind, G.A. and Swanson}
     13759}
     13760@article{Beck2004,
     13761  year = {2004},
     13762  title = {Nuclear Pore Complex Structure and Dynamics Revealed by Cryoelectron Tomography},
     13763  pages = {1387-1390},
     13764  journal = {Science},
     13765  volume = {306},
     13766  author = {Beck, M. and {F\"orster}, F. and Ecke, M. and Plitzko, J.M. and Melchior, F. and Gerisch, G. and Baumeister, W. and Medalia, O.}
     13767}
     13768@article{Ban2000,
     13769  year = {2000},
     13770  title = {The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 {\AA} Resolution},
     13771  pages = {905-920},
     13772  journal = {Science},
     13773  volume = {289},
     13774  author = {Ban, N. and Nissen, P. and Hansen, J. and Moore, P.B. and Steitz, T.A.}
     13775}
     13776@article{Havelka1993,
     13777  year = {1993},
     13778  title = {Projection structure of Halorhodopsin from Halobacterium halobium at 6 {\AA} resolution obtrained by electron cryo-microscopy},
     13779  pages = {837-846},
     13780  journal = {Journal of Molecular Biology},
     13781  volume = {234},
     13782  author = {Havelka, W. A. and Henderson, R. and Heymann, J.A.W. and Oesterhelt, D.}
     13783}
     13784@article{Havelka1995,
     13785  year = {1995},
     13786  title = {Three-dimensional structure of halorhodopsin at 7 {\AA} resolution},
     13787  pages = {726-738},
     13788  journal = {Journal of Molecular Biology},
     13789  volume = {247},
     13790  author = {Havelka, W.A. and Henderson, R. and Oesterhelt, D.}
     13791}
     13792@article{Ruprecht2001,
     13793  year = {2001},
     13794  title = {Determining the structure of biological macromolecules by transmission electron microscopy, single particle analysis and 3D reconstruction},
     13795  pages = {121-164},
     13796  journal = {Biophysics and Molecular Biology},
     13797  volume = {75},
     13798  author = {Ruprecht, J. and Nield, J.}
     13799}
     13800@article{Pennycook2000,
     13801  year = {2000},
     13802  title = {Z-Contrast Imaging in an Aberration-Corrected Scanning Transmission Electron Microscope},
     13803  pages = {343},
     13804  journal = {Microscopy and Microanalysis},
     13805  volume = {6},
     13806  author = {Pennycook, S.J. and Rafferty, B. and Nellist, P.D.}
     13807}
     13808@inproceedings{Pennycook2003,
     13809  year = {2003},
     13810  title = {Quantum Mechanical Resolution Limits to Imaging and Spectroscopy in the Transmission Electron Microscope},
     13811  booktitle = {From the Atomic to the Nano Scale},
     13812  pages = {126},
     13813  editor = {McGuire, J.},
     13814  publisher = {Old Dominion Universtity},
     13815  author = {Pennycook, S.J. and Lupini, A.R. and Varela, M. and Borisevich, A. and Peng, Y. and Nellist, P.D.}
     13816}
     13817@article{Pennycook2009,
     13818  year = {2009},
     13819  title = {Aberration corrected scanning transmission electron microscopy: from atomic imaging and analysis to solving energy problems},
     13820  pages = {3709-3733},
     13821  journal = {Philosophical Transactions of the Royal Society},
     13822  volume = {367},
     13823  author = {Zach2009}
     13824}
     13825@article{Pennycook1990,
     13826  year = {1990},
     13827  title = {High-Resolution Incoherent Imaging of Crystals},
     13828  pages = {938},
     13829  journal = {Physical Review Letters},
     13830  volume = {64},
     13831  author = {Pennycook, S.J. and Jesson, D.E.}
     13832}
     13833@article{Muto2006a,
     13834  number = {4},
     13835  year = {2006},
     13836  title = {Spectral restoration and energy resolution improvement of electron energy-loss spectra by Pixon reconstruction: {II. Application} to practical {ELNES} analysis of low {SNR}},
     13837  pages = {225-230},
     13838  journal = {Journal of Electron Microscopy},
     13839  volume = {55},
     13840  author = {Muto, S. and Tatsumi, K. and Puetter, R.C. and Yosida, T. and Yamamoto, Y. and Sasano, Y.}
     13841}
     13842@article{Kujawa1990,
     13843  year = {1990},
     13844  title = {Second-rank aberrations of a magnetic imaging energy filter: measurement and correction},
     13845  pages = {39-46},
     13846  journal = {Optik},
     13847  volume = {86},
     13848  author = {Kujawa, S. and Krahl, D. and Niedrig, H. and Zeitler, E.}
     13849}
     13850@article{Kujawa1992,
     13851  year = {1992},
     13852  title = {Performance of a low-noise CCD camera adapted to a transmission electron microscope},
     13853  pages = {395-403},
     13854  journal = {Ultramicrosopy},
     13855  volume = {46},
     13856  author = {Kujawa, S. and Krahl, D.}
     13857}
     13858@article{Lugg2010,
     13859  year = {2010},
     13860  title = {Energy-filtered transmission electron microscopy based on inner-shell ionization},
     13861  journal = {Ultramicroscopy},
     13862  author = {Lugg, N.R. and Freitag, B. and Findlay, S.D. and Allen, L.J..}
     13863}
     13864@article{Avoort2005,
     13865  number = {12},
     13866  year = {2005},
     13867  title = {Aberration retrieval from the intensity point-spread function in the focal region using the extended {Nijboer-Zernike} approach},
     13868  pages = {1695-1728},
     13869  journal = {Journal of Modern Optics},
     13870  volume = {52},
     13871  author = {Avoort, C. van der and Braat, J.J.M. and Dirksen, P. and Janssen, A.J.E.M.}
     13872}
     13873@article{Eastham2009,
     13874  year = {2009},
     13875  title = {A design for a subminiature, low energy scanning electron microscope with atomic resolution},
     13876  pages = {014702},
     13877  journal = {Journal of Appplied Physics},
     13878  volume = {105},
     13879  author = {Eastham, D.A. and Edmondson, P. and Greene, S. and Donnelly, S. and Olsson, E. and Svensson, K. and Bleloch, A.}
     13880}
     13881@article{Schonhense2002,
     13882  number = {6},
     13883  year = {2002},
     13884  title = {Correction of chromatic and spherical aberration in electron microscopy utilizing the time structure of pulsed excitation sources},
     13885  pages = {2526-2534},
     13886  journal = {Journal of Vacuum Science Technology B},
     13887  volume = {20},
     13888  author = {{Sch\"onhense}, G. and Spiecker, H.}
     13889}
     13890@article{Sawada2005,
     13891  number = {2},
     13892  year = {2005},
     13893  title = {Experimental evaluation of a spherical aberration-corrected {TEM} and {STEM}},
     13894  pages = {119-121},
     13895  journal = {Journal of Electron Microscopy},
     13896  volume = {54},
     13897  author = {Sawada, H. and Tomita, T. and Naruse, M. and Honda, T. and Hambridge, P. and Hartel, P. and Haider, M. and Hetherington, C. and Doole, R. and Kirkland, A. and Hutchison, J. and Titchmarsh, J. and Cockayne, D.}
     13898}
     13899@article{Hartel1996,
     13900  year = {1996},
     13901  title = {Conditions and reasons for incoherent imaging in {STEM}},
     13902  pages = {93-114},
     13903  journal = {Ultramicroscopy},
     13904  volume = {63},
     13905  author = {Hartel, P. and Rose, H. and Dinges, C.}
     13906}
     13907@article{Egelman2007,
     13908  year = {2007},
     13909  title = {The iterative helical real space reconstruction method: Surmounting the problems posed by real polymers},
     13910  pages = {83-94},
     13911  journal = {Journal of Strcutural Biology},
     13912  volume = {157},
     13913  author = {Egelman, E.H.}
     13914}
     13915@article{Sawada2009,
     13916  year = {2009},
     13917  title = {Correction of higher order geometrical aberration by triple 3-fold astigmatism field},
     13918  pages = {1-7},
     13919  journal = {Journal of electron microscopy},
     13920  author = {Sawada, H. and Sasaki, T. and Hosokawa, F. and Yuasa, S. and Terao, M. and Kawazoe, M .and Nakamichi, T. and Kaneyama, T. and Kondo, Y. and Kimoto, K. and Suenada, K.}
     13921}
     13922@article{Sawada2008,
     13923  year = {2008},
     13924  title = {Measurement method of aberration from Ronchigram by autocorrelation function},
     13925  pages = {1467-1475},
     13926  journal = {Ultramicroscopy},
     13927  volume = {108},
     13928  author = {Sawada, H. and Sannomiya, T. and Hosokawa, F. and Nakamichi, T. and Kaneyama, T. and Tomita, T. and Kondo, Y. and Tanaka, T. and Oshima, Y. and Tanishiro, Y. and Takayanagi, K.}
     13929}
     13930@article{Erni2005a,
     13931  year = {2005},
     13932  title = {Valence electron energy-loss spectroscopy in monochromated scanning transmission electron microscopy},
     13933  pages = {176-192},
     13934  journal = {Ultramicroscopy},
     13935  volume = {104},
     13936  author = {Erni, R. and Browning, N.D.}
     13937}
     13938@article{Gilbert1972,
     13939  number = {1},
     13940  year = {1972},
     13941  title = {Iterative Methods for the three-dimensional reconstruction of a object from projections},
     13942  pages = {105-117},
     13943  journal = {Journal of Theoretical Biology},
     13944  volume = {36},
     13945  author = {Gilbert, P.}
     13946}
     13947@article{Shiue2009,
     13948  year = {2009},
     13949  title = {Phase TEM for biological imaging utilizing a Boersch electrostatic phase plate: theory and practice},
     13950  pages = {135-145},
     13951  journal = {Journal of Electron Microscopy},
     13952  volume = {58},
     13953  author = {Shiue, J. and et al.}
     13954}
     13955@techreport{Zande2005,
     13956  number = {PR-TN-2005/00002},
     13957  year = {2005},
     13958  title = {Local magnification in Ronchigrams (Aberration retrieval in {STEM})},
     13959  type = {Technical Note},
     13960  address = { Eindhoven, The Netherlands},
     13961  institution = {Philips Research},
     13962  author = {Zande, M.J. van der and Kok, C.}
     13963}
     13964@article{Rafferty1998,
     13965  number = {16},
     13966  year = {1998},
     13967  title = {Direct and indirect transitions in the region of the band gap using electron-energy-loss spectroscopy},
     13968  pages = {10326-10337},
     13969  journal = {Physical Review B},
     13970  volume = {58},
     13971  author = {Rafferty, B. and Brown, L.M.}
     13972}
     13973@article{Lichte1986,
     13974  year = {1986},
     13975  title = {Electron Holography approaching atomic resolution},
     13976  pages = {293-304},
     13977  journal = {Ultramicroscopy},
     13978  volume = {20},
     13979  author = {Lichte, H.}
     13980}
     13981@article{Bosman2009,
     13982  year = {2009},
     13983  title = {Nanoscale band gap spectroscopy on ZnO and GaN-based compounds with a monochromated electron microscope},
     13984  pages = {101110},
     13985  journal = {Applied Physics Letters},
     13986  volume = {95},
     13987  author = {Bosman, M. and Tang, L.J. and Ye, J.D. and Zhang, Y. and Keast, V.J.}
     13988}
     13989@article{Conway1999,
     13990  year = {1999},
     13991  title = {Methods for Reconstructing Density Maps of Single Particles from Cryoelectron Micrographs to Subnanometer Resolution},
     13992  pages = {106-118},
     13993  journal = {Journal of Strcutural Biology},
     13994  volume = {128},
     13995  author = {Conway, J.F. and Steven, A.C.}
     13996}
     13997@article{Muller2008a,
     13998  year = {2008},
     13999  title = {Aberration-corrected optics: from an idea to a device},
     14000  pages = {167-178},
     14001  journal = {Physcis Procedia},
     14002  volume = {1},
     14003  author = {Muller, H. and Uhlemann, S. and Hartel, P. and Haider, M.}
     14004}
     14005@article{Chiu1977,
     14006  year = {1977},
     14007  title = {Factors affecting high resolution fixed-beam transmission electron microscopy},
     14008  pages = {207-217},
     14009  journal = {Ultramicroscopy},
     14010  volume = {2},
     14011  author = {Chiu, W. and Glaeser, R.M.}
     14012}
     14013@article{HitatchiSEM2007,
     14014  number = {3},
     14015  year = {2007},
     14016  title = {{STEM} Imaging of Lattic Fringes and beyond in a {UHR} In-Lens Field-Emission {SEM}},
     14017  pages = {12-16},
     14018  journal = {Microscopy Today},
     14019  author = {Ngo, V. van and Hernandez, M. and Roth, B. and Joy, D.C.}
     14020}
     14021@article{Schatz1997,
     14022  year = {1997},
     14023  title = {Angular reconstitution in three-dimensional electron microscopy: practical and technical aspects},
     14024  pages = {179-193},
     14025  journal = {Scanning Microscopy},
     14026  volume = {11},
     14027  author = {Schatz, M. and Orlova, E.V. and Harauz, G. and Stark, H. and Dube, P. and Zemlin, F. and Heel, M. van}
     14028}
     14029@article{Isabell2009,
     14030  year = {2009},
     14031  title = {Development of a 200kV Atomic resolution Analytical Electron Microscope},
     14032  pages = {8-10},
     14033  journal = {Microscopy Today},
     14034  author = {Isabell, T. and Brink, J. and Kawasaki, M. and Armbruster, B. and Ishikawa, I. and Okunishi, E. and Sawada, H. and Okura, Y. and Yamazaki, K. and Ishikawa, T. and Kawazu, M. and Hori, M. and Terao, M. and Kanno, M. and Tanba, S. and Kondo, Y.}
     14035}
     14036@article{Penczek2002a,
     14037  year = {2002},
     14038  title = {Resolution Measures in Single Particle Analysis},
     14039  author = {Penczek, P.A.}
     14040}
     14041@article{Majorovits2007,
     14042  year = {2007},
     14043  title = {Optimizing phase contrast in transmission electron microscopy with an electrostatic (Boersch) phase plate},
     14044  pages = {213-226},
     14045  journal = {Ultramicroscopy},
     14046  volume = {107},
     14047  author = {Majorovits, E. and Barton, B. and {Schulthei\ss}, K. and Perez-Willard, F. and Gerthsen, D. and {Schr\"oder}, R.R.}
     14048}
     14049@article{Baumeister2004,
     14050  year = {2004},
     14051  title = {Mapping molecular landscapes inside cells},
     14052  pages = {865-872},
     14053  journal = {Biological Chemistry},
     14054  volume = {385},
     14055  author = {Baumeister, W.}
     14056}
     14057@article{Harrach1995,
     14058  year = {1995},
     14059  title = {Instrumental factors in high-resolution {FEG STEM}},
     14060  pages = {1-5},
     14061  journal = {Ultramicroscopy},
     14062  volume = {58},
     14063  author = {Harrach, H.S. von}
     14064}
     14065@article{Baxter2007,
     14066  year = {2007},
     14067  title = {SPIRE: The SPIDER Reconstruction Engine},
     14068  pages = {56-63},
     14069  journal = {Journal of Strcutural Biology},
     14070  volume = {157},
     14071  author = {Baxter, W.T. and Leith, A. and Frank, J.}
     14072}
     14073@article{Rafferty2001,
     14074  number = {3},
     14075  year = {2001},
     14076  title = {On the origin of transverse incoherence in {Z-}constrast {STEM}},
     14077  pages = {227-233},
     14078  journal = {Journal of Electron Microscopy},
     14079  volume = {50},
     14080  author = {Rafferty, B. and Nellist, P.D. and Pennycook, S.J.}
     14081}
     14082@article{Drummy2004,
     14083  year = {2004},
     14084  title = {Low-voltage electron microscopy of polymer and organic molecular thin films},
     14085  pages = {247-256},
     14086  journal = {Ultramicroscopy},
     14087  volume = {99},
     14088  author = {Drummy, L.F. and Yang, J. and Martin, D.C.}
     14089}
     14090@article{Jiang2006,
     14091  year = {2006},
     14092  title = {Experimental and theoretical improvements on understanding of the {O K-edge} of {TeO}$_2$},
     14093  pages = {123-129},
     14094  journal = {Ultramicroscopy},
     14095  volume = {106},
     14096  author = {Jiang, N. and Jiang, B. and Erni, R. and Browning, N.D. and Spence, J.C.H.}
     14097}
     14098@article{Jiang2005,
     14099  year = {2003},
     14100  title = {Applications of a bilateral denoising filter in biological electron microscopy},
     14101  pages = {114-122},
     14102  journal = {Journal of Structural Biology},
     14103  volume = {144},
     14104  author = {Jiang, W. and Baker, M.L. and Wu, Q. and Bajaj, C. and Chiu, W.}
     14105}
     14106@article{Jiang2008,
     14107  year = {2008},
     14108  title = {Spatial control over atomic layer deposition using microcontact-printed resists},
     14109  pages = {8799-8807},
     14110  journal = {Surface & Coatings Technology},
     14111  volume = {201},
     14112  author = {Jiang, X. and chen, R. and Bent, S.F.}
     14113}
     14114@article{Chen2007,
     14115  year = {2007},
     14116  title = {A dose-rate effect in single-particle electron microscopy},
     14117  pages = {92-100},
     14118  journal = {Journal of Structural Biology},
     14119  volume = {161},
     14120  author = {Chen, J.Z. and Sachse, C. and Xu, C. and Mielke, T. and Spahn, C.M.T. and Grigorieff, N.}
     14121}
     14122@article{Alloyeau2010,
     14123  year = {2010},
     14124  title = {Imaging of soft and hard materials using a Boersch phase plate in a transmission electron microscope},
     14125  pages = {563-570},
     14126  journal = {Ultramicroscopy},
     14127  volume = {110},
     14128  author = {Alloyeau, D. and Hsieh, W.K. and Anderson, E.H. and Hilken, L. and Benner, G. and Meng, X. and Chen, F.R. and Kisielowski, C.}
     14129}
     14130@article{Heel2005,
     14131  year = {2005},
     14132  title = {Fourier shell correlation threshold criteria},
     14133  pages = {250-262},
     14134  journal = {Journal of Structural Biology},
     14135  volume = {151},
     14136  author = {Heel, M. van and Schatz, M.}
     14137}
     14138@article{Heel2000,
     14139  number = {4},
     14140  year = {2000},
     14141  title = {Single-particle electron cryo-microscopy: towards atomic resolution},
     14142  pages = {307-369},
     14143  journal = {Quarterly Review of Biophysics},
     14144  volume = {33},
     14145  author = {Heel, M. van and Gowen, B. and Matadeen, R. and Orlova, E.V. and Finn, R. and Pape, T. and Cohen, D. and Stark, H. and Schmidt, R. and Schatz, M. and Patwardhan, A.}
     14146}
     14147@article{Walther2006a,
     14148  year = {2006},
     14149  title = {Preliminary Results from the First Monochromated and Aberration Corrected 200-kV Field-Emission Scanning Transmission Electron Microscope},
     14150  pages = {498-505},
     14151  journal = {Microscopy and Microanalysis},
     14152  volume = {12},
     14153  author = {Walther, T. and Stegmann, H.}
     14154}
     14155@article{Yamaguchi2009,
     14156  year = {2009},
     14157  title = {Smart specimen preparation for freeze substitution and serial ultrathin sectioning of yeast cells},
     14158  pages = {261-266},
     14159  journal = {Journal of Electron Microscopy},
     14160  volume = {58},
     14161  author = {Yamaguchi, M. and Okada, H. and Namiki, Y.}
     14162}
     14163@article{Sparrow1916,
     14164  year = {1916},
     14165  title = {On spectroscopic resolving power},
     14166  pages = {76-86},
     14167  journal = {Astrophysical Journal},
     14168  volume = {44},
     14169  author = {Sparrow, C.M.}
     14170}
     14171@article{Rose1984,
     14172  year = {1984},
     14173  title = {Information transfer in transmission electron microscopy},
     14174  pages = {173-192},
     14175  journal = {Ultramicroscopy},
     14176  volume = {15},
     14177  author = {Rose, H.}
     14178}
     14179@article{Martinez2008,
     14180  year = {2008},
     14181  title = {The use of multipole fields for aberration correctionin pi/2 Wien filters},
     14182  pages = {193-198},
     14183  journal = {Physics Procedia},
     14184  volume = {1},
     14185  author = {Martinez, G. and Tsuno, K.}
     14186}
     14187@article{Driel2009,
     14188  year = {2009},
     14189  title = {Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells},
     14190  pages = {669-684},
     14191  journal = {European Journal of Cell Biology},
     14192  volume = {88},
     14193  author = {Driel, L.F. van and Valentijn, J.A. and Valentijn, K.M. and Koning, R.I. and Koster, A.J.}
     14194}
     14195@article{Pomfret2007,
     14196  year = {2007},
     14197  title = {Application of the iterative helical real-space reconstruction method to large membranous tubular crystals of P-type ATPases},
     14198  pages = {106-116},
     14199  journal = {Journal of Strcutural Biology},
     14200  volume = {157},
     14201  author = {Pomfret, A.J. and Rice, W.J. and Stokes, D.L.}
     14202}
     14203@article{Beek1996,
     14204  year = {1996},
     14205  title = {Wave function reconstruction in {HRTEM}: the parabola method},
     14206  pages = {167-183},
     14207  journal = {Ultramicroscopy},
     14208  volume = {64},
     14209  author = {Beek, M. op de and Dyck, D. van and Coene, W.}
     14210}
     14211@article{Lichte2008,
     14212  year = {2007},
     14213  title = {Performance limits of electron holography},
     14214  pages = {256-262},
     14215  journal = {Ultramicroscopy},
     14216  volume = {108},
     14217  author = {Lichte, H.}
     14218}
     14219@article{Hue2005,
     14220  year = {2005},
     14221  title = {Calibration of Projector Lens Distortions for Quantitative High-Resolution TEM},
     14222  pages = {552-553},
     14223  journal = {Microsc Microanal},
     14224  volume = {11 (Suppl 2)},
     14225  author = {Hue, F. and Johnson, C.L. and Lartigue-Korinek, S. and Wang, G. and Buseck, P.R. and Hytch, M.J.}
     14226}
     14227@article{Kaiser2002,
     14228  year = {2002},
     14229  title = {Direct observation of defect-mediated cluster nucleation},
     14230  pages = {102-106},
     14231  journal = {Nature materials},
     14232  volume = {1},
     14233  author = {Kaise, U. and Muller, D.A. and Grazul, J.L. and Chuvilin, A. and Kawasaki, M.}
     14234}
     14235@article{Turchanin2009,
     14236  year = {2009},
     14237  title = {One Nanometer Thin Carbon Nanosheets with Tunable Conductivity and Stiffness},
     14238  pages = {1233-1237},
     14239  journal = {Advanced Materials},
     14240  volume = {21},
     14241  author = {Turchanin, A. and Beyer, A. and Nottbohm, T. and Zhang, X. and Stosch, R. and and Sologubenko, A.S. and Mayer, J. and Hinze, P. and Weimann, T. and {G\"olzh\"auser}}
     14242}
     14243@article{Mkhoyan2006,
     14244  year = {2006},
     14245  title = {Direct Determination of Local Lattice Polarity in Crystals},
     14246  pages = {1354},
     14247  journal = {Science},
     14248  volume = {312},
     14249  author = {Mkhoyan, K.A. and Batson, P.E. and Cha, J. and Schaff, W.J. and Silcox, J.}
     14250}
     14251@inproceedings{Sawada2006,
     14252  title = {Method to Measure Aberrations from Ronchigram by Auto-Correlation Function},
     14253  journal = {Journal of Electron Microscopy},
     14254  volume = {IMC 16},
     14255  address = {Sapporo, Japan},
     14256  author = {Sawada, H. and Sannomiya, T. and Hosokawa, F. and Kaneyama, T. and Kondo, Y. and Tanishiro, Y. and Takayanagi, K.}
     14257}
     14258@article{Allen2003,
     14259  year = {2003},
     14260  title = {Atomic Resolution Electron Energy Loss Spectroscopy Imaging in Aberration Corrected Scanning Transmission Electron Microscopy},
     14261  pages = {105503},
     14262  journal = {Physical Review Letters},
     14263  volume = {91},
     14264  author = {Allen, L.J. and Findlay, S.D. and Lupini, A.R. and Oxley, M.P. and Pennycook, S.J.}
     14265}
     14266@article{Erni2010,
     14267  year = {2010},
     14268  title = {Optimization of exit-plane waves restored from {HRTEM} through-focal series},
     14269  pages = {151-161},
     14270  journal = {Ultramicroscopy},
     14271  volume = {110},
     14272  author = {Erni, R. and Rossell, M.D. and Nakashima, P.N.H.}
     14273}
     14274@article{Meyer1998,
     14275  year = {1998},
     14276  title = {The effects of electron and photon scattering on signal and noise transfer properties of scintillators in CCD cameras used for electron detection},
     14277  pages = {23-33},
     14278  journal = {Ultramicroscopy},
     14279  volume = {75},
     14280  author = {Meyer, R.R. and Krikland, A.I.}
     14281}
     14282@article{Lencova2008,
     14283  year = {2008},
     14284  title = {A pitfall in the calculation of higher order aberrations},
     14285  pages = {737-740},
     14286  journal = {Ultramicroscopy},
     14287  volume = {108},
     14288  author = {Lencova, B. and Lenc, M. and Hawkes, P.W.}
     14289}
     14290@article{Browning1996,
     14291  year = {1996},
     14292  title = {Direct Experimental Determination of the Atomic Structure at Internal Interfaces},
     14293  pages = {1779},
     14294  journal = {Journal of Physics D},
     14295  volume = {29},
     14296  author = {Browning, N.D. and Pennycook, S.J.}
     14297}
     14298@article{Fellmann2002,
     14299  year = {2002},
     14300  title = {A relational database for {cryoEM}: experience at one year and 50000 images},
     14301  pages = {273-282},
     14302  journal = {Journal of Structural Biology},
     14303  volume = {137},
     14304  author = {Fellmann, D. and Pulokas, J. and MIlligan, R.A. and Carragher, B. and Potter, C.S.}
     14305}
     14306@article{Mueller2007,
     14307  number = {11},
     14308  year = {2006},
     14309  title = {Biological Scanning Transmission Electron Microscopy: Imaging and Single Molecule Mass Determination},
     14310  pages = {749-752},
     14311  journal = {Chimia},
     14312  volume = {60},
     14313  author = {{M\"uller}, S.A. and Engel, A.}
     14314}
     14315@article{Rhinow2008,
     14316  year = {2008},
     14317  title = {Electron cryo-microscopy of biological specimens on conductive titanium-silicon metal glass films},
     14318  pages = {698-705},
     14319  journal = {Ultramicroscopy},
     14320  volume = {108},
     14321  author = {Rhinow, D. and Kuhlbrandt, W.}
     14322}
     14323@article{Nomaguchi2004,
     14324  year = {2004},
     14325  title = {Separation of linear and non-linear imaging components in high-resolution transmission electron microscope images},
     14326  pages = {403-406},
     14327  journal = {Journal of Electron Microscopy},
     14328  volume = {53},
     14329  author = {Nomaguchi, T. and Kawasaki, T. and Kimura, Y. and Takai, Y.}
     14330}
     14331@article{Browning1997,
     14332  year = {1997},
     14333  title = {{EELS} in the {STEM}: Determination of Materials Properties on the Atomic Scale},
     14334  pages = {333},
     14335  journal = {Micron},
     14336  volume = {28},
     14337  author = {Browning, N.D. and Wallis, D.J. and Nllist, P.D. and Pennycook, S.J.}
     14338}
     14339@article{Gipson2007,
     14340  year = {2007},
     14341  title = {2dx - User-friendly image processing for 2D crystals},
     14342  pages = {64-72},
     14343  journal = {Journal of Strcutural Biology},
     14344  volume = {157},
     14345  author = {Gipson, B. and Zeng, X. and Zhang, Z.Y. and Stahlberg, H.}
     14346}
     14347@article{Oho1997,
     14348  number = {7},
     14349  year = {1997},
     14350  title = {New Generation Scanning Electron Microscopy Technology Based on the Concept of Active Image Processing},
     14351  pages = {483-488},
     14352  journal = {Scanning},
     14353  volume = {19},
     14354  author = {Oho, E. and Hoshino, Y. and Ogashiwa, T.}
     14355}
     14356@article{Penczek2002,
     14357  year = {2002},
     14358  title = {Three-dimensional spectral signal-to-noise ratio for a class of reconstruction algorithms},
     14359  pages = {34-46},
     14360  journal = {Journal of Structural Biology},
     14361  volume = {138},
     14362  author = {Penczek, P.A.}
     14363}
     14364@article{Gu2003,
     14365  number = {23},
     14366  year = {2003},
     14367  title = {3D electron microscopy reveals the variables deposition and protein dynamics of the peripheral pyruvate dehydrogenase component about the core},
     14368  pages = {7015-7020},
     14369  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     14370  volume = {100},
     14371  author = {Gu, Y. and Zhou, Z.H. and McCarthy, D.B. and Reed, L.J. and Stoops, J.K.}
     14372}
     14373@article{Bouwer2004,
     14374  year = {2004},
     14375  title = {Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement},
     14376  pages = {297-306},
     14377  journal = {Journal of Structural Biology},
     14378  volume = {148},
     14379  author = {Bouwer, J.C. and Mackey, M.R.and Lawrence, A. and Deerinck, T.J. and Jones, Y.Z. and Terada, M. and Martone, M.E. and Peltier, S. and Ellisman, M.H.}
     14380}
     14381@article{Hell2007,
     14382  year = {2007},
     14383  title = {Far-Field Optical Nanoscopy},
     14384  pages = {1153-1158},
     14385  journal = {Science},
     14386  volume = {316},
     14387  author = {Hell, S.W.}
     14388}
     14389@techreport{Bosch2004,
     14390  number = {PR-TN-2004/00364},
     14391  year = {2004},
     14392  title = {The use of mutual information in image registration},
     14393  type = {Technical Note},
     14394  address = { Eindhoven, The Netherlands},
     14395  institution = {Philips Research},
     14396  author = {Bosch, E.G.T.}
     14397}
     14398@article{Kunji2001,
     14399  year = {2001},
     14400  title = {Electron Crystallographic Analysis of Two-Twodimensional Crystals of Sensory Rhodopsin II:A 6.9 {\AA} Projection Structure},
     14401  pages = {279-293},
     14402  journal = {Journal of Molecular Biology},
     14403  volume = {308},
     14404  author = {Kunji, E.R.S. and Spudich, E.N. and Grisshammer, R. and Henderson, R. and Spudich, J.L.}
     14405}
     14406@article{Reichenbach1991,
     14407  year = {1991},
     14408  title = {Characterizing digital image acquisition devices},
     14409  pages = {170-177},
     14410  journal = {Optical Engineering},
     14411  volume = {30},
     14412  author = {Reichenbach, S.E. and Park, S.K. and Narayanswamy, R.}
     14413}
     14414@article{Bos1993,
     14415  year = {1993},
     14416  title = {Resolvability of the parameters of multiexponentials and other sum models},
     14417  pages = {313-322},
     14418  journal = {IEEE Transactions of Signal Processing},
     14419  volume = {41},
     14420  author = {Bos, A. van den and Swarte, J.H.}
     14421}
     14422@article{Gu2007,
     14423  year = {2007},
     14424  title = {Band-gap measurements of direct and indirect semiconductors using monochromated electrons},
     14425  pages = {195214},
     14426  journal = {Physical Review B},
     14427  volume = {75},
     14428  author = {Gu, L. and Srot, V. and Sigle, W. and Koch, C. and Aken, P. van and Scholz, F. and Thapa, S.B. and Kirchner, C. and Jetter, M. and Ruehle, M.}
     14429}
     14430@article{Kisielowski2008,
     14431  year = {2008},
     14432  title = {Detection of Single Atoms and Buried Defects in Three Dimensions by Aberration-Corrected Electron Microscope with 0.5-AA Information Limit},
     14433  pages = {469-477},
     14434  journal = {Microscopy and Microanalysis},
     14435  volume = {14},
     14436  author = {Kisielowski, C.}
     14437}
     14438@article{Nellist2006,
     14439  year = {2006},
     14440  title = {Confocal operation of a transmission electron microscope with two aberration correctors},
     14441  pages = {124105},
     14442  journal = {Applied Physics Letters},
     14443  volume = {89},
     14444  author = {Nellist, P.D. and behan, G. and Kirkland, A.I. and Hetherington, C.J.D.}
     14445}
     14446@article{Scheres2005,
     14447  year = {2005},
     14448  title = {Fast maximum-likelihood refinement of electron microscopy images},
     14449  pages = {ii243-ii244},
     14450  journal = {Bioinfomatics},
     14451  volume = {21 S2},
     14452  author = {Scheres, S.H.W. and Valle, M. and Carazo, J.-M.}
     14453}
     14454@article{Girit2009,
     14455  year = {2009},
     14456  title = {Graphene at the Edge: Stability and Dynamics},
     14457  pages = {1705-1707},
     14458  journal = {Science},
     14459  volume = {323},
     14460  author = {Girit, C.O. and Meyer, J.C. and Erni, R.and Rossel, M.D. and Kisielowski, C. and Yang, Li. and Park, C.-H. and Crommie, M.F. and Cohen, M.L. and Louie, S.G. and Zettl, A.}
     14461}
     14462@article{Yamazaki2005,
     14463  year = {2005},
     14464  title = {Precise measurement of third-order spherical aberration using low-order zone-axis {Ronchigrams}},
     14465  note = {in press},
     14466  journal = {Ultramicroscopy},
     14467  author = {Yamazaki, T. and Kotaka, Y. and Kikuchi, Y. and Watanabe, K.}
     14468}
     14469@article{Ronchi1964,
     14470  number = {4},
     14471  year = {1964},
     14472  title = {Forty years of history of a grating interferometer},
     14473  pages = {437-452},
     14474  journal = {Applied Optics},
     14475  volume = {3},
     14476  author = {Ronchi, V.}
     14477}
     14478@article{Lorusso2003,
     14479  number = {4},
     14480  year = {2003},
     14481  title = {Experimental Resolution Measurement in Critical Dimension Scanning Electron Microscope Metrology},
     14482  pages = {175-180},
     14483  journal = {Scanning},
     14484  volume = {25},
     14485  author = {Lorusso, G.F. and Joy, D.C.}
     14486}
     14487@article{Yin2003,
     14488  year = {2003},
     14489  title = {A statistical approach to computer processing of cryo-electron microscope images: virion classification and {3-D} reconstruction},
     14490  pages = {24-50},
     14491  journal = {Journal of Structural Biology},
     14492  volume = {144},
     14493  author = {Yin, Z. and Zheng, Y. and Doerschuk, P.C. and Nararajan, P. and Johnson, J.E.}
     14494}
     14495@article{Bammes2009,
     14496  year = {2009},
     14497  title = {Radiation damage effects at four specimen temperatures from 4 K to 100 K},
     14498  journal = {Journal of Structural Biology},
     14499  author = {Bammes, B.E. and Jakana, J. and Schmid, M.F. and Chiu, W.}
     14500}
     14501@article{Shao1988,
     14502  number = {11},
     14503  year = {1988},
     14504  title = {On the fifth order aberration in a sextupole corrected probe forming system},
     14505  pages = {2428-2437},
     14506  journal = {Rev. Sci. Instrum.},
     14507  volume = {59},
     14508  author = {Shao, Z.}
     14509}
     14510@article{Haas1999,
     14511  year = {1999},
     14512  title = {A Symmetry Mismatch at the Site of {RNA} Packaging in the Polymerase Complex of {dsRNA} Bacteriophage $\phi$6},
     14513  pages = {357-372},
     14514  journal = {Journal of Molecular Biology},
     14515  volume = {294},
     14516  author = {Haas, F. de and Paatero, A.O. and Mindich, L. and Bamford, D.H. and Fuller, S.D.}
     14517}
     14518@article{Glaeser2004,
     14519  year = {2004},
     14520  title = {Specimen charging on thin films with one conducting layer: discussion of physical principles},
     14521  pages = {790-796},
     14522  journal = {Microscopy and Microanalysis},
     14523  volume = {10},
     14524  author = {Glaeser, R.M. and Downing, K.H.}
     14525}
     14526@article{Takai2006,
     14527  year = {2006},
     14528  title = {Molecular-scale imaging of unstained deoxyribonucleic acid fibers by phase transmission electron microscopy},
     14529  pages = {133903},
     14530  journal = {Applied Physics Letters},
     14531  volume = {89},
     14532  author = {Takai, Y. and Nomaguchi, T. and Matsushita, S. and Kimura, Y.}
     14533}
     14534@article{Gabashvili2000,
     14535  year = {2000},
     14536  title = {Solution Structure of the {E. coli} {70S} Ribosome at 11.5{\AA} Resolution},
     14537  pages = {537-549},
     14538  journal = {Cell},
     14539  volume = {100},
     14540  author = {Gabashvili, I.S. and Agrawal, R.K. and Spahn, C.M.T. and Gracssucci, R.A. and Svergun, D.I. and Frank, J. and Penczek, P.}
     14541}
     14542@article{Kabius2009,
     14543  year = {2009},
     14544  title = {First application of Cc-corrected imaging for high-resolution and energy-filtered TEM},
     14545  pages = {1-9},
     14546  journal = {Journal Of Electron Microscopy},
     14547  volume = {1},
     14548  author = {Kabius, B. and Hartel, P. and Haider, M. and {M\"uller}, H. and Uhlemann, S. and Loebau, U. and Zach, J. and Rose, H.}
     14549}
     14550@article{Rose1977,
     14551  year = {1977},
     14552  title = {Nonstandard imaging methods in electron microscopy},
     14553  pages = {251-267},
     14554  journal = {Ultramicroscopy},
     14555  volume = {2},
     14556  author = {Rose, H.}
     14557}
     14558@article{HohmannMarriott2009_SI,
     14559  number = {10},
     14560  year = {2009},
     14561  title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography},
     14562  pages = {729-732},
     14563  note = {Supplementary Information},
     14564  journal = {Nature Methods},
     14565  volume = {6},
     14566  author = {Hohmann-Marriott, M.F. and Sousa, A.A. and Azari, A.A. and Glushakova, S. and Zhang, G. and Zimmerberg, J. and Leapmann, R.D.}
     14567}
     14568@article{Zhu2009,
     14569  year = {2009},
     14570  title = {Imaging single atoms using secondary electrons with an aberration-corrected electron microscope},
     14571  pages = {808-811},
     14572  journal = {Nature Methods},
     14573  volume = {8},
     14574  author = {Zhu, Y. and Inada, H. and Nakamura, K. and Wall, J.}
     14575}
     14576@article{Pennycook1988,
     14577  year = {1988},
     14578  title = {Chemically Sensitive Structure Imaging with a Scanning Transmission Electron Microscope},
     14579  pages = {565},
     14580  journal = {Nature},
     14581  volume = {336},
     14582  author = {Pennycook, S.J. and Boatner, L.A.}
     14583}
     14584@article{Lehmann1999,
     14585  year = {1999},
     14586  title = {Electron Holography at atomic dimensions - present state},
     14587  pages = {249-263},
     14588  journal = {Materials Characterization},
     14589  volume = {42},
     14590  author = {Lehmann, M. and Lichte, H. and Geiger, D. and Lang, G. and Schweda, E.}
     14591}
     14592@article{Zuo2003,
     14593  year = {2003},
     14594  title = {Atomic Resolution Imaging of a Carbon Nanotube from Diffraction Intensities},
     14595  pages = {1419-1421},
     14596  journal = {Science},
     14597  volume = {300},
     14598  author = {Zuo, J.M. and Vartanyants, I. and Gao, M. and Zhang, R. and Nagahara, L.A.}
     14599}
     14600@article{Sousa2009,
     14601  year = {2009},
     14602  title = {Monte Carlo electron-trajectory simulations in bright-field and dark-field STEM:Implications for tomography of thick biological sections},
     14603  pages = {213-221},
     14604  journal = {Ultramicroscopy},
     14605  volume = {109},
     14606  author = {Sousa, A.A. and Hohmann-Marriott, M.F. and Zhang, G. and Leapman, R.D.}
     14607}
     14608@article{Downing1975,
     14609  year = {1975},
     14610  title = {Discrimination of Heavy and Ligth Components in Electron Microscopy Using Single-Sideband Holographic Techniques},
     14611  pages = {155-175},
     14612  journal = {Optik},
     14613  volume = {42},
     14614  author = {Downing, K.H. and Siegel, B.M.}
     14615}
     14616@article{Takeguchi2008,
     14617  year = {2008},
     14618  title = {Development of a stage-scanning system for high-resolution confocal STEM},
     14619  pages = {123-127},
     14620  journal = {Journal of Electron Microscopy},
     14621  volume = {57},
     14622  author = {Takeguchi, M. and Hasimoto, A. and Shimojo, M. and Mitsuishi, K. and Furuya, K.}
     14623}
     14624@article{Nottbohm2008,
     14625  year = {2008},
     14626  title = {Novel carbon nanosheets as support for ultrahigh-resolution structural analysis of nanoparticles},
     14627  pages = {885-892},
     14628  journal = {Ultramicroscopy},
     14629  volume = {108},
     14630  author = {Nottbohm, C.T. and Beyer, A. and Sologubenko, A.S. and Ennen, I. and {H\"utten}, A. and {R\"osner}, H. and Eck, W. and Mayer, J. and {G\"olzh\"auser}}
     14631}
     14632@article{Mitterbauer2003,
     14633  year = {2003},
     14634  title = { Electron energy-loss near-edge structures of 3d transition metal oxides recorded at high-energy resolution},
     14635  pages = {469-480},
     14636  journal = {Ultramicroscopy},
     14637  volume = {96},
     14638  author = {Mitterbauer, C. and Kothleitner, G. and Grogger, W. and Zandbergen, H. and Freitag, B. and Tiemeijer, P.C. and Hofer, F.}
     14639}
     14640@article{Morniroli1992,
     14641  year = {1992},
     14642  title = {Microdiffratction as a tool for crystal structure identification and determination},
     14643  pages = {219-239},
     14644  journal = {Ultramicroscopy},
     14645  volume = {45},
     14646  author = {Morniroli, J.P. and Steeds, J.W.}
     14647}
     14648@article{Hetherington2008,
     14649  year = {2008},
     14650  title = {High-Resolution TEM and the Application of Direct and Indirect Aberration Correction},
     14651  pages = {60-67},
     14652  journal = {Microscopy and Microanalysis},
     14653  volume = {14},
     14654  author = {Hetherington, C.J.D. and Chang, L.Y.S. and Haigh, S. and Nellist, P.D. and Gontard, L.C. and Dunin-Borkowski, R.E. and Kirkland, A.I.}
     14655}
     14656@article{Hartwell1999,
     14657  year = {1999},
     14658  title = {From molecular to modular cell biology},
     14659  pages = {C47-C50},
     14660  journal = {Nature},
     14661  volume = {402},
     14662  author = {Hartwell, L.H. and Hopfield, J.J. and Leibler, S. and Murray, A.M.}
     14663}
     14664@article{Uno2005,
     14665  year = {2005},
     14666  title = {Aberration correction and its automatic control in scanning electron microscopes},
     14667  pages = {438-448},
     14668  journal = {Optik},
     14669  volume = {116},
     14670  author = {Uno, S. and Honda, K. and Nakamura, N. and Matsuya, M. and Zach, J.}
     14671}
     14672@article{Joy2002,
     14673  number = {1},
     14674  year = {2002},
     14675  title = {{SMART}- a programm to measure {SEM} resolution and imaging performance},
     14676  pages = {24-34},
     14677  journal = {Journal of Microscopy},
     14678  volume = {208},
     14679  author = {Joy, D.C.}
     14680}
     14681@article{Danev2006,
     14682  year = {2006},
     14683  title = {Applicability of thin film phase plates in biological electron microscopy},
     14684  pages = {35-43},
     14685  journal = {Biophysics},
     14686  volume = {2},
     14687  author = {Danev, R. and Nagayama, K.}
     14688}
     14689@article{Malac2006,
     14690  year = {2006},
     14691  title = {Bright-field {TEM} imaging of single molecules: Dream or near future?},
     14692  pages = {40-49},
     14693  journal = {Ultramicroscopy},
     14694  volume = {107},
     14695  author = {Malac, M. and Beleggia, M. and Egerton, R. and Zhu, Y.}
     14696}
     14697@article{Harutyunyan2009,
     14698  year = {2009},
     14699  title = {Preferential Growth of Single-Walled Carbon Nanotubes with Metallic Conductivity},
     14700  pages = {116-120},
     14701  journal = {Science},
     14702  volume = {326},
     14703  author = {Harutyunyan, A.R. and Chen, G. and Paronyan, T.M. and Pigos, E.M. and Kuznetsov, O.A. and Hewaparakrama, K. and Kim, S.M. and Zakharov, D. and Stach, E.A. and Sumanasekera, G.U.}
     14704}
     14705@article{Yan2007,
     14706  year = {2007},
     14707  title = {AUTO3DEM - an automated and high throughput program for image reconstruction of icosahedral particles},
     14708  pages = {73-82},
     14709  journal = {Journal of Strcutural Biology},
     14710  volume = {157},
     14711  author = {Yan, X. and Sinkovits, R.S. and Baker, T.S.}
     14712}
     14713@article{Buban2009,
     14714  year = {2009},
     14715  title = {High-resolution low-dose scanning transmission electron microscopy},
     14716  pages = {1-10},
     14717  journal = {Journal of Electron Microscopy},
     14718  author = {Buban, J.P. and Ramasse, Q. and Gipson, B. and Browning, N.D. and Stahlberg, H.}
     14719}
     14720@article{Bleloch2004,
     14721  year = {2004},
     14722  title = {Imaging at the picometer scale},
     14723  pages = {42-48},
     14724  journal = {Materials Today},
     14725  author = {Bleloch, A. and Lupini, A. }
     14726}
     14727@article{Nelayah2009,
     14728  number = {7},
     14729  year = {2009},
     14730  title = {Direct imaging of surface plasmon resonances on single triangular silver nanoprisms at optical wavelength using low-loss EFTEM imaging},
     14731  pages = {1003-1005},
     14732  journal = {Optics Letters},
     14733  volume = {34},
     14734  author = {Nelayah, J. and Gu, L. and Sigle, W. and Koch, C.T. and Pastoriza-Santos, I. and Liz-Marzan, L.M. and Aken, P.A. van}
     14735}
     14736@article{Penrose1956,
     14737  year = {1956},
     14738  title = {On best approximate solution of linear matrix equations},
     14739  pages = {17-19},
     14740  journal = {Proceedings of the Cambridge Philosophical Society},
     14741  volume = {52},
     14742  author = {Penrose, R.}
     14743}
     14744@article{Buczko2000,
     14745  year = {2000},
     14746  title = {Excitonic Effects in Core-Excitation Spectra of Semiconductors},
     14747  pages = {2168},
     14748  journal = {Physical Review Letters},
     14749  volume = {85},
     14750  author = {Buczko, R. and Duscher, G. and Pennycook, S>J. and Pantelides, S.T.}
     14751}
     14752@article{Penrose1955,
     14753  year = {1955},
     14754  title = {A generalized inverse for matrices},
     14755  pages = {406-413},
     14756  journal = {Proceedings of the Cambridge Philosophical Society},
     14757  volume = {51},
     14758  author = {Penrose, R.}
     14759}
     14760@article{Cooper2007,
     14761  year = {2007},
     14762  title = {Medium resolution off-axis electron holography with mV sensitivity},
     14763  journal = {Applied Physics Letters},
     14764  author = {Cooper, D. and Truche, R. and Rivallin, P. and Hartmann, J.-M. and Laugier, F. and Bertin, F. and Chabli, A. and Rouviere, J.-L.}
     14765}
     14766@article{Frank2009,
     14767  number = {3},
     14768  year = {2009},
     14769  title = {Single-particle reconstructionof biological macromolecules in electron microscopy - 30 years},
     14770  pages = {139-158},
     14771  journal = {Quaterly Reviews of Biophysics},
     14772  volume = {42},
     14773  author = {Frank, J.}
     14774}
     14775@book{Bronstein1991,
     14776  edition = {25th},
     14777  year = {1991},
     14778  title = {Taschenbuch der Mathematik},
     14779  address = {Thun, Frankfurt (Main)},
     14780  publisher = {Teubner},
     14781  author = {Bronstein, I.N. and Semendjajew, K.A.}
     14782}
     14783@article{Krivanek2008a,
     14784  year = {2008},
     14785  title = {Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy},
     14786  pages = {121-160},
     14787  journal = {Advances in Imaging and Electron Physics},
     14788  volume = {153},
     14789  author = {Krivanek, O.L. and Delby, N. and keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.}
     14790}
     14791@article{Nellist2000,
     14792  year = {2000},
     14793  title = {The principles and interpretation of annular dark-field z-contrast imaging},
     14794  pages = {147-203},
     14795  note = {Copy Bernd,Rolf},
     14796  journal = {Advances in Imaging and Electron Physics},
     14797  volume = {113},
     14798  author = {Nellist, P.D. and Pennycook, S.J.}
     14799}
     14800@article{Chu2009a,
     14801  year = {2009},
     14802  title = {Probing surface plasmons in individual Ag nanoparticles in the ultra-violet spectral regime},
     14803  pages = {235705},
     14804  journal = {Nanotechnology},
     14805  volume = {20},
     14806  author = {Chu, M.-W. et al.}
     14807}
     14808@article{Boisset1997,
     14809  year = {1997},
     14810  title = {Effects of angular oversampling in three-dimensional reconstruction},
     14811  pages = {131-145},
     14812  journal = {Scanning Microscopy},
     14813  volume = {11},
     14814  author = {Boisset, N. and Penczek, P.A. and Taveau, J-C. and You, V. and Haas, F. de and Lamy, J.}
     14815}
     14816@article{Vincent1994,
     14817  year = {1994},
     14818  title = {Double concial beam-rocking system for measurement of integrated electron diffreation intensities},
     14819  pages = {271-282},
     14820  journal = {Ultramicroscopy},
     14821  volume = {53},
     14822  author = {Vincent, R. and Midgley, P.A.}
     14823}
     14824@article{Scheres2005a,
     14825  year = {2005},
     14826  title = {Maximum-likelihood Multi-reference Refinement for Electron Microscopy Images},
     14827  pages = {139-149},
     14828  journal = {Journal of Molecular Biology},
     14829  volume = {348},
     14830  author = {Scheres, S.H.W. and Valle, M. and {Nu\~nez}, R. and Sorzano, C.O.S. and Marabini, R. and Herman, G.T. and Carazo, J.-M.}
     14831}
     14832@article{Cowley2001,
     14833  number = {3},
     14834  year = {2001},
     14835  title = {{STEM} imaging with a thin annular detector},
     14836  pages = {147-155},
     14837  journal = {Journal of Electron Microscopy},
     14838  volume = {50},
     14839  author = {Cowley, J.M.}
     14840}
     14841@article{Uhlemann1996,
     14842  year = {1996},
     14843  title = {Acceptance of imaging energy filters},
     14844  pages = {161-167},
     14845  journal = {Ultramicroscopy},
     14846  volume = {63},
     14847  author = {Uhlemann, S. and Rose, H.}
     14848}
     14849@article{Frank1981,
     14850  year = {1981},
     14851  title = {Computer Averaging of Electron Micrographs of 40S Ribosomal Subunits},
     14852  journal = {Science},
     14853  volume = {214},
     14854  author = {Frank, J. and Verschoor, A. and Boublik, M.}
     14855}
     14856@article{Maccagnano-Zacher2008,
     14857  year = {2008},
     14858  title = {Effects of tilt on high-resolution ADF-STEM imaging},
     14859  pages = {718-726},
     14860  journal = {Ultramicroscopy},
     14861  volume = {187},
     14862  author = {Maccagnano-Zacher, S.E. and Mkhoyan, K.A. and Kirkland, E.J. and Silcox, J.}
     14863}
     14864@article{Gubbens2010,
     14865  year = {2010},
     14866  title = {The GIF quantum, a next generation post-column imaging energy filter},
     14867  journal = {Ultramicroscopy},
     14868  author = {Gubbens, A. and Barfels, M. and Trevor, C. and Twesten, R. and Mooney, P. and Thomas, P. and Menon, N. and Kraus, B. and Mao, C. and Mcginn, B.}
     14869}
     14870@article{James1999,
     14871  year = {1999},
     14872  title = {Practical aspects of atomic resolution imaging and analysis in {STEM}},
     14873  pages = {125-139},
     14874  journal = {Ultramicroscopy},
     14875  volume = {78},
     14876  author = {James, E.M. and Browning, N.D.}
     14877}
     14878@article{Du2007,
     14879  year = {2007},
     14880  title = {Quantitative comparison of image contrast and pattern between experimental and simulated high-resolution transmission electron micrographs},
     14881  pages = {281-292},
     14882  journal = {Ultramicroscopy},
     14883  volume = {107},
     14884  author = {Du, K. and Hochmeister, K. von and Philipp, F.}
     14885}
     14886@article{Krivanek1991,
     14887  year = {1999},
     14888  title = {Developments in EELS instrumentation for spectroscopy and imaging},
     14889  pages = {315-332},
     14890  journal = {Mirosc. Mircoanal. Microstruct},
     14891  volume = {2},
     14892  author = {Krivanek, O.L. and Gubbens, A.J. and Dellby, N.}
     14893}
     14894@article{Moore1920,
     14895  year = {1920},
     14896  title = {On the reciprocal of the general algebraic matrix},
     14897  pages = {394-395},
     14898  journal = {Bulletin of the American Mathematical Society},
     14899  volume = {26},
     14900  author = {Moore, E.H.}
     14901}
     14902@article{James1997,
     14903  year = {1997},
     14904  title = {A method for measuring the effective source coherence in a field emission transmission electron microscope},
     14905  pages = {174-179},
     14906  journal = {Applied Surface Science},
     14907  volume = {111},
     14908  author = {James, E.M. and Rodenburg, J.M}
     14909}
     14910@article{Davey2002,
     14911  year = {2002},
     14912  title = {{DNA}-dependent divalent cation binding in the nucleosome core particle},
     14913  pages = {11169-11174},
     14914  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     14915  volume = {99},
     14916  author = {Davey, C.A. and Richmond, T.J.}
     14917}
     14918@article{Kisielowski2001,
     14919  year = {2001},
     14920  title = {Imaging columns of the light elements carbon,nitrogen and oxygen with sub {\AA}ngstrom resolution},
     14921  pages = {243-263},
     14922  journal = {Ultramicroscopy},
     14923  volume = {89},
     14924  author = {Kisielowski, C. and Hetherington, C.J.D. and Wang, Y.C. and Kilaas, R. and O'keefe, M.A. and Thust, A.}
     14925}
     14926@article{Chu2009,
     14927  year = {2009},
     14928  title = {Crystal Structure of the {30S} Ribosomal Subunit from Thermus thermophilus: Purification, Crystallization and Structure Determination},
     14929  journal = {Journal of Molecualar Biology},
     14930  author = {Chu, M.-W. and Myroshnchenko, V. and Chen, C.H. and Deng, J.-P. and Mou, C.-Y. and Garcia de Abajo, F.J.G.}
     14931}
     14932@article{Chu2008,
     14933  year = {2008},
     14934  title = {Surface exciton polaritons in individual Au nanoparticles in the far-ultraviolet spectral regime},
     14935  pages = {245402},
     14936  journal = {Physical Review B},
     14937  volume = {77},
     14938  author = {Chu, M.-W. and Chen, C.-H. and Garcia de Abajo, F.J.G. and Deng, J.-P. and Mou, C.-Y.}
     14939}
     14940@article{Duscher2001,
     14941  year = {2001},
     14942  title = {Core-Hole Effects on Energy-Loss Near-Edge Structure},
     14943  pages = {355},
     14944  journal = {Ultramicroscopy},
     14945  volume = {86},
     14946  author = {Duscher, G. and Buczko, R. and Pennycook, S.J. and Pantelides, S.T.}
     14947}
     14948@article{Hytch1998,
     14949  year = {1998},
     14950  title = {Quantitative measurement of displacement and strain fields from HREM micrographs},
     14951  pages = {131-146},
     14952  journal = {Ultramicroscopy},
     14953  volume = {74},
     14954  author = {Hytch, M.J. and Snoeck, E. and Kilaas, R.}
     14955}
     14956@article{Lazar2006,
     14957  year = {2006},
     14958  title = {Enhancement of resolution in core-loss and low-loss spectroscopy in a monochromated microscope},
     14959  pages = {1091-1103},
     14960  journal = {Ultramicroscopy},
     14961  volume = {106},
     14962  author = {Lazar, S. and Botton, G.A. and Zandbergen, H.W.}
     14963}
     14964@article{Bullogh1999,
     14965  year = {1999},
     14966  title = {The Projection Structure of the Low Temperature K Intermediate of the Bacteriorhodopsin Photocycle D etermined by Electron Diffraction},
     14967  pages = {1663-1671},
     14968  journal = {Journal of Molecular Biology},
     14969  volume = {286},
     14970  author = {Bullough, P.A. and Henderson, R.}
     14971}
     14972@article{Rohde2005,
     14973  year = {2005},
     14974  title = {Estimating intensity variance due to noise in registered images: Applications to diffusion tensor {MRI}},
     14975  pages = {673-684},
     14976  journal = {NeuroImage},
     14977  volume = {26},
     14978  author = {Rohde, G.K. and Barnett, A.S. and Basser, P.J. and Pierpaoli, C.}
     14979}
     14980@article{Lichte2008a,
     14981  year = {2008},
     14982  title = {Electron holography - basics and applications},
     14983  pages = {1-43},
     14984  journal = {Reports on Progress in Physics},
     14985  author = {Lichte, H. and Lehmann, M.}
     14986}
     14987@article{HohmannMarriott2009,
     14988  number = {10},
     14989  year = {2009},
     14990  title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography},
     14991  pages = {729-732},
     14992  journal = {Nature Methods},
     14993  volume = {6},
     14994  author = {Hohmann-Marriott, M.F. and Sousa, A.A. and Azari, A.A. and Glushakova, S. and Zhang, G. and Zimmerberg, J. and Leapmann, R.D.}
     14995}
     14996@article{Sawada2009a,
     14997  year = {2009},
     14998  title = {STEM imaging of 47-pm-separated atomic columns by a spherical aberration-corrected electron microscope with a 300-kV cold field emission gun},
     14999  pages = {357-361},
     15000  journal = {Journal of electron microscopy},
     15001  volume = {58},
     15002  author = {Sawada, H. and Tanishiro, Y. and Ohashi, N. and Tomita, T. and Hosokawa, F. and Kaneyama, T. and Kondo, Y. and Takayanagi, K.}
     15003}
     15004@article{Kim1997,
     15005  year = {1997},
     15006  title = {Energy distributions of Zr/O/W Schottky electron emission},
     15007  pages = {461-465},
     15008  journal = {Journal of Applied Physics},
     15009  volume = {81},
     15010  author = {Kim, H.S. and Yu, M.L. and Thomson, M.G.R. and Kratchmer, E. and Chang, T.H.P.}
     15011}
     15012@article{Baldock2002,
     15013  year = {2002},
     15014  title = {Three-dimensional reconstructions of extracellular matrix polymers using automated electron tomography},
     15015  pages = {130-136},
     15016  journal = {Journal of Structural Biology},
     15017  volume = {138},
     15018  author = {Baldock, C. and Gilpin, C.J. and Koster, A.J. and Ziese, U. and Kadler, K.E. and Kielty, C.M. and Holmes, D.F.}
     15019}
     15020@article{Grigorieff1996,
     15021  year = {1996},
     15022  title = {Electron-crystallographic Refinement of the Structure of Bacteriorhopdopsin},
     15023  pages = {393-421},
     15024  journal = {Journal of Molecular Biology},
     15025  volume = {259},
     15026  author = {Grigorieff, N. and Ceska, T.A. and Downing, K.H. and Baldwin, J.M. and Henderson, R.}
     15027}
     15028@article{Heel1987,
     15029  year = {1987},
     15030  title = {Similarity measures between images},
     15031  pages = {95-100},
     15032  journal = {Ultramicroscopy},
     15033  volume = {21},
     15034  author = {Heel, M. van}
     15035}
     15036@article{Akase2010,
     15037  year = {2010},
     15038  title = {In situ Lorentz microscopy in an alternating magnetic field},
     15039  pages = {1-75},
     15040  journal = {Journal of Electron Microscopy},
     15041  author = {Akase, Z. and Shindo, D.}
     15042}
     15043@article{Xiong2009,
     15044  year = {2009},
     15045  title = {CTF determination and correction for low dose tomographic tilt series},
     15046  pages = {378-387},
     15047  journal = {Journal of Structural Biology},
     15048  volume = {168},
     15049  author = {Xiong, Q. and Morphew, M.K. and Schwartz, C.L. and Hoenger, A.H. and Mastronarde, D.N.}
     15050}
     15051@article{Unser1987,
     15052  year = {1987},
     15053  title = {A new resolution criterion based on spectral signal-to-noise ratio},
     15054  pages = {39-52},
     15055  journal = {Ultramicroscopy},
     15056  volume = {23},
     15057  author = {Unser, M. and Trus, B.L. and Steven, A.C.}
     15058}
     15059@article{Morniroli2007,
     15060  year = {2007},
     15061  title = {LACDIF, a new electron diffraction technique obtained with the LACBED configuration and a Cs corrector: Comparison with electron precession},
     15062  pages = {100-115},
     15063  journal = {Ultramicroscopy},
     15064  volume = {108},
     15065  author = {Morniroli, J.P. and Houdellier, F. and Roucau, C. and Puiggali, J. and Gesti, S. and Redjaimia, A.}
     15066}
     15067@article{Fu1999,
     15068  year = {1999},
     15069  title = {Yeast {RNA} Polymerase {II} at 5{\AA} Resolution},
     15070  pages = {799-810},
     15071  journal = {Cell},
     15072  volume = {98},
     15073  author = {Fu, J. and Gnatt, A.L. and Bushnell, D.A. and Jensen, G.J. and Thompson, N.E. and Burgess, R.R. and David, P.R. and Kornberg, R.D.}
     15074}
     15075@article{Stadelmann1987,
     15076  year = {1987},
     15077  title = {{EMS} - {A} software package for electron diffration analysis and {HREM} image simulation in material science},
     15078  pages = {131-146},
     15079  journal = {Ultramicroscopy},
     15080  volume = {21},
     15081  author = {Stadelmann, P.A.}
     15082}
     15083@inproceedings{Pennycook2003a,
     15084  series = {AIP Conference},
     15085  year = {2003},
     15086  title = {Transmission Electron Microscopy: Overview and Challenges},
     15087  booktitle = {Characterization and Metrology for ULSI Technology},
     15088  pages = {627},
     15089  volume = {683},
     15090  publisher = {American Institute of Physics},
     15091  author = {Pennycook, S.J. and Lupini, A.R. and Borisevich, A. and Varela, M. and Peng, Y. and Nellist, P.D. and Duscher, G. and Buczko, R. and Pantelides, S.T.}
     15092}
     15093@article{Ronchi1961,
     15094  year = {1961},
     15095  title = {Resolving power of calculates and detected images},
     15096  pages = {458-460},
     15097  journal = {Journal of the Optical Society of America},
     15098  volume = {51},
     15099  author = {Ronchi, V.}
     15100}
     15101@article{Philippsen2007,
     15102  year = {2007},
     15103  title = {The contrast-imaging function for tilted specimens},
     15104  pages = {202-212},
     15105  journal = {Ultramicroscopy},
     15106  volume = {107},
     15107  author = {Philippsen, A. and Engel, H.-A. and Engel, A.}
     15108}
     15109@article{Haurauz1986,
     15110  year = {1986},
     15111  title = {Exact filters for general geometry three dimensional reconstruction},
     15112  pages = {146-156},
     15113  journal = {Optik},
     15114  volume = {78},
     15115  author = {Haurauz, G. and Heel, M. van}
     15116}
     15117@article{Walther2006,
     15118  year = {2006},
     15119  title = {First experimental test of a new monochromated and aberration-corrected 200 {kV} field-emission scanning transmission electron microscope},
     15120  pages = {963-969},
     15121  journal = {Ultramicroscopy},
     15122  volume = {106},
     15123  author = {Walther, T. and Quandt, E. and Stegmann, H. and Thesen, A. and Benner, G.}
     15124}
     15125@article{Muller2006a,
     15126  year = {2006},
     15127  title = {Advancing the Hexapole Cs-Corrector for the Scanning Transmission Electron Microscope},
     15128  pages = {442-455},
     15129  journal = {Microscopy and Microanalysis},
     15130  volume = {12},
     15131  author = {{M\"uller}, H. and Uhlemann, S. and Hartel, P. and Haider, M.}
     15132}
     15133@article{Aoyama2008,
     15134  year = {2008},
     15135  title = {STEM tomography for thick biological specimens},
     15136  pages = {70-80},
     15137  journal = {Ultramicroscopy},
     15138  volume = {109},
     15139  author = {Aoyama, K. and takagi, T. and Hirase, A. and Miyazawa, A.}
     15140}
     15141@techreport{Zande2004,
     15142  number = {PR-TN-2004/00608},
     15143  year = {2004},
     15144  title = {Aberration analysis in electron microscopy ({T}heory)},
     15145  type = {Technical Note},
     15146  address = { Eindhoven, The Netherlands},
     15147  institution = {Philips Research},
     15148  author = {Zande, M.J. van der and Kok, C.}
     15149}
     15150@article{Shibata2004,
     15151  year = {2004},
     15152  title = {Observation of rare-earth segregation in silicon nitride ceramics at subnanometre dimensions},
     15153  pages = {730-734},
     15154  journal = {Nature},
     15155  volume = {428},
     15156  author = {Shibata, N. and Pennycook, S.J. and Gosnell, T.R. and Painter, G.S. and Shelton, W.A. and Becher, P.F.}
     15157}
     15158@article{DeRosier1999,
     15159  year = {1999},
     15160  title = {Averaging Data Derived from Images of Helical Structures with Different Symmetries},
     15161  pages = {159-165},
     15162  journal = {Journal of Molecular Biology},
     15163  volume = {289},
     15164  author = {DeRosier, D. and Stokes, D.L. and Darst, S.A.}
     15165}
     15166@article{Crozier2006,
     15167  year = {2006},
     15168  title = {Book review: Transmission Electron Energy Loss Spectrometry in Materials Science and the EELS Atlas},
     15169  pages = {332},
     15170  journal = {Micron},
     15171  volume = {38},
     15172  author = {Crozier, P.A.}
     15173}
     15174@article{Carlo2002,
     15175  year = {2002},
     15176  title = {Cryo-negative staining reduces electron-beam sensitivity of vitrified biological particles},
     15177  pages = {216-222},
     15178  journal = {Journal of Structural Biology},
     15179  volume = {138},
     15180  author = {Carlo, S. de and El-Bez, C. and Alvarez-Rua, C. and Borge, J. and Dubochet, J.}
     15181}
     15182@inproceedings{Tiemeijer1999a,
     15183  series = {Electron Microscopy and Analysis Group Conference EMAG99},
     15184  year = {1999},
     15185  title = {Operation modes of a {TEM} monochromator},
     15186  pages = {191-196},
     15187  volume = {161},
     15188  address = {Sheffiled, UK},
     15189  publisher = {IOP Publishing Ltd},
     15190  author = {Tiemeijer, P.C.}
     15191}
     15192@article{Thust2009,
     15193  year = {2009},
     15194  title = {High-Resolution Transmission Electron Microscopy on an Absolute Contrast Scale},
     15195  pages = {220801},
     15196  journal = {Physical Review Letters},
     15197  volume = {102},
     15198  author = {Thust, A.}
     15199}
     15200@article{Suenaga2009,
     15201  year = {2009},
     15202  title = {Visualizing and identifying single atoms using electron energy-loss spectroscopy with low accelerating voltage},
     15203  pages = {1-4},
     15204  journal = {Nature Chemistry},
     15205  author = {Suenaaga, K. and Sato, Y. and Liu, Z. and kataura, H. and Okazaki, T. and Kimoto, K. and Sawada, H. and Sasaki, T. and Omoto, K. and Kaneyama, T. and Kondo, Y.}
     15206}
     15207@article{Hill2008,
     15208  year = {2008},
     15209  title = {The ALIS He ion source and its application to high resolution microscopy},
     15210  pages = {135-141},
     15211  journal = {Physics Procedia},
     15212  volume = {1},
     15213  author = {Hill, R.and Notte, J. and Ward, B.}
     15214}
     15215@article{Hohn2007,
     15216  year = {2007},
     15217  title = {SPARX, a new environment for Cryo-EM image processing},
     15218  pages = {47-55},
     15219  journal = {Journal of Strcutural Biology},
     15220  volume = {157},
     15221  author = {Hohn, M. and Tang, G. and Goodyear, G. and Baldwin, P.R. and Huang, Z. and Penczek, P.A. and Yang, C. and Glaeser, R.M. and Adama, P.D. and Ludtke, S.J.}
     15222}
     15223@article{Tang2007,
     15224  year = {2007},
     15225  title = {EMAN2: An extensible image processing suite for electron microscopy},
     15226  pages = {38-46},
     15227  journal = {Journal of Strcutural Biology},
     15228  volume = {157},
     15229  author = {Tang, G. and Peng, L. and Baldwin, P.R. and Mann, D.S. and Jiang, W. and Rees, I. and Ludtke, S.J.}
     15230}
     15231@article{Krivanek2009,
     15232  year = {2009},
     15233  title = {High-energy resolution monochromator for aberration-corrected scanning transmission electron microscopy/electron energy-loss spectroscopy},
     15234  pages = {3683-3697},
     15235  journal = {Philosophical Transactions of the Royal Society},
     15236  volume = {367},
     15237  author = {Krivanek, O.L. and Ursin, J.P. and Bacon, N.J. and Corbin, G.J. and Delby, N. and Hrncirik, P. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.}
     15238}
     15239@article{Krivanek2008,
     15240  year = {2008},
     15241  title = {An electron microscope for the aberration-corrected era},
     15242  pages = {179-195},
     15243  journal = {Ultramicroscopy},
     15244  volume = {108},
     15245  author = {Krivanek, O.L. and Corbin, G.K. and Dellby, N. and Elston, B.F. and Keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S. and Woodruff,J.W.}
     15246}
     15247@article{Gunawan2009,
     15248  year = {2009},
     15249  title = {Locating La atoms in epitaxial $Bi_{3.25}La_{0.75}Ti_3O_{12}$ films through atomic resolution electron energy loss spectroscopy mapping},
     15250  pages = {192902},
     15251  journal = {Applied Physics Letters},
     15252  volume = {95},
     15253  author = {Gunawan, L. and Lazar, S. and Gautreau, O. and Narnagea, C. and Pignolet, A. and Botton, G.A.}
     15254}
     15255@misc{Krivanek2001,
     15256  year = {2001},
     15257  title = {Autoadjusting charged-particle probe-forming apparatus},
     15258  note = {pending},
     15259  howpublished = {EP application number: 01308443.9},
     15260  author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.},
     15261  organization = {NION}
     15262}
     15263@article{Cox1986,
     15264  year = {1986},
     15265  title = {Information capacity and resolution in an optical system},
     15266  pages = {1152-1158},
     15267  journal = {Journal of the Optical Society of America A},
     15268  volume = {3},
     15269  author = {Cox, I.J. and Sheppard, C.J.R.}
     15270}
     15271@article{Downing2004,
     15272  year = {2004},
     15273  title = {Experimental characterization and mitigation of specimen charging on thin films with one conducting layer},
     15274  pages = {783-789},
     15275  journal = {Microscopy and Microanalysis},
     15276  volume = {10},
     15277  author = {Downing, K.H. and McCartney, M.R. and Glaeder, R.M.}
     15278}
     15279@article{Hohenstein1992,
     15280  year = {1992},
     15281  title = {Single Sideband Imagin in High-Resolution Electron Microscopy},
     15282  pages = {485-492},
     15283  journal = {Applied Physics A},
     15284  volume = {54},
     15285  author = {Hohenstein, M.}
     15286}
     15287@article{Mitsuishi2006,
     15288  year = {2006},
     15289  title = {Ultrahigh-Vacuum Third-Order Spherical Aberration (Cs) Corrector for a Scanning Transmission Electron Microscope},
     15290  pages = {1-5},
     15291  journal = {Microscopy and Microanalysis},
     15292  volume = {12},
     15293  author = {Mitsuishi, K. and Takeguchi, M. and Kondo, Y. and Hosokawa, F. and Okamoto, K. and Sannomiva, T. and Hori, M. and Iwama, T.}
     15294}
     15295@article{Koster1987,
     15296  year = {1987},
     15297  title = {An autofocus method for a {TEM}},
     15298  pages = {209-222},
     15299  journal = {Ultramicroscopy},
     15300  volume = {21},
     15301  author = {Koster, A.J. and Bos, A. van den and Mast, K.D. van der}
     15302}
     15303@article{Egerton2003,
     15304  year = {2003},
     15305  title = {New techniques in electron energy-loss spectroscopy and energy-filtered imaging},
     15306  pages = {127-139},
     15307  journal = {Micron},
     15308  volume = {34},
     15309  author = {Egerton, R.F.}
     15310}
     15311@article{Egerton2004,
     15312  year = {2004},
     15313  title = {Radiation damage in the TEM and SEM},
     15314  pages = {399-409},
     15315  journal = {Micron},
     15316  volume = {35},
     15317  author = {Egerton, R.F. and Li, P. and Malac, M.}
     15318}
     15319@article{Egerton2007,
     15320  year = {2007},
     15321  title = {Limits to the spatial, energy and momentum resolution of electron energy-loss spectroscopy},
     15322  pages = {575-586},
     15323  journal = {Ultramicroscopy},
     15324  volume = {107},
     15325  author = {Egerton, R.F.}
     15326}
     15327@article{Egerton2009,
     15328  year = {2009},
     15329  title = {Electron energy-loss spectroscopy in the TEM},
     15330  pages = {016502},
     15331  journal = {Reports on Progress in Physics},
     15332  volume = {72},
     15333  author = {Egerton, R.F.}
     15334}
     15335@article{Baldwin1988,
     15336  year = {1988},
     15337  title = {Images of purple membrane at 2.8{\AA} resolution obtained by cryo-electron microscopy},
     15338  pages = {585-591},
     15339  journal = {Journal of Molecular Biology},
     15340  volume = {202},
     15341  author = {Baldwin, J.M. and Henderson, R. and Backman, E. and Zemlin, F.}
     15342}
     15343@article{Zhang2008,
     15344  number = {6},
     15345  year = {2008},
     15346  title = {Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction},
     15347  pages = {1867-1872},
     15348  journal = {Proceedings of the National Academy of Science of America},
     15349  volume = {105},
     15350  author = {Zhang, X. and Settembre, E. and Xu. Chen, Dormitzer, P.R. and Bellamy, R. and Harrison, S.C. and Grigorieff, N.}
     15351}
     15352@article{Downing1979,
     15353  year = {1979},
     15354  title = {Possibilities of heavy atom discrimination using single-sideband techniques},
     15355  pages = {13-31},
     15356  journal = {Ultramicroscopy},
     15357  volume = {4},
     15358  author = {Downing, K.H.}
     15359}
     15360@article{Zheng2007,
     15361  year = {2007},
     15362  title = {Automated acquisition of electron microscopic random conical tilt sets},
     15363  pages = {148-155},
     15364  journal = {Journal of Strcutural Biology},
     15365  volume = {157},
     15366  author = {Zheng, S.Q. and Kollman, J.M. and Braunfeld, M.B. and Sedat, J.W. and Agard, D.A.}
     15367}
     15368@article{Eyidi2006,
     15369  year = {2006},
     15370  title = {Short note on parallel illumination in the {TEM}},
     15371  pages = {1144-1149},
     15372  journal = {Ultramicroscopy},
     15373  volume = {106},
     15374  author = {Eyidi, D. and Hebert, C. and Schattschneider, P.}
     15375}
     15376@article{Mallick2005,
     15377  year = {2005},
     15378  title = {ACE: Automated CTF Estimation},
     15379  pages = {8-29},
     15380  journal = {Ultramicroscopy},
     15381  volume = {104},
     15382  author = {Mallick, S.P. and Carragher, B. and Potter, C.S. and Kriegman, D.J.}
     15383}
     15384@article{Liu2009,
     15385  year = {2009},
     15386  title = {Off-axis emission properties for the extended Schottky electron source},
     15387  pages = {2547-2552},
     15388  journal = {J. Vac. Sci. Technol. B},
     15389  volume = {27},
     15390  author = {Liu, K. and Schwind, G.A. and Swanson, L.W.}
     15391}
     15392@article{Kirkland1987,
     15393  year = {1987},
     15394  title = {Simulation of annular dark field {STEM} images using a modified mutlislice method},
     15395  pages = {77-96},
     15396  journal = {Ultramicroscopy},
     15397  volume = {23},
     15398  author = {Kirkland, E.J. and Loane, R.F. and Silcox, J.}
     15399}
     15400@article{Sigworth1998,
     15401  year = {1998},
     15402  title = {A Maximum-Likelihood Approach to Single-Particle Image Refinement},
     15403  pages = {328-339},
     15404  journal = {Journal of Structural Biology},
     15405  volume = {122},
     15406  author = {Sigworth, F.J.}
     15407}
     15408@article{Harada2004,
     15409  number = {17},
     15410  year = {2004},
     15411  title = {Double-biprism electron interferometry},
     15412  pages = {3219-3231},
     15413  journal = {Applied Physics Letters},
     15414  volume = {84},
     15415  author = {Harada, K. and Akashi, T. and Togawa, Y. and Matsuda, T.}
     15416}
     15417@article{Mooney2007,
     15418  year = {2007},
     15419  title = {Optimization of Image Collection for Cellular Electron Microscopy},
     15420  pages = {661-719},
     15421  journal = {Methods in cell biology},
     15422  volume = {79},
     15423  author = {Mooney, P..}
     15424}
     15425@article{Brarnova1999,
     15426  year = {2004},
     15427  title = {The optics of round and multipole electrostatic lenses},
     15428  pages = {1-207},
     15429  journal = {Advances in electronics and electron physics},
     15430  volume = {76},
     15431  author = {Baranova, L.A. and Yavor, S.Y.}
     15432}
     15433@article{Kuramochi2008,
     15434  year = {2008},
     15435  title = {Measurement of twofold astigmatism of probe-forming lens using low-order zone-axis ronchigram},
     15436  pages = {339-345},
     15437  journal = {Ultramicroscopy},
     15438  volume = {108},
     15439  author = {Kurmochi, K. and Yamazaki, T. and Kotaka, Y. and Kikuchi, Y. and Hashimoto, I. and Watanabe, K.}
     15440}
     15441@article{Kuramochi2009,
     15442  year = {2009},
     15443  title = {Effect of chromatic aberration on atomic-resolved spherical aberration corrected STEM images},
     15444  pages = {36-42},
     15445  journal = {Ultramicroscopy},
     15446  volume = {110},
     15447  author = {Kurmochi, K. and Yamazaki, T. and Kotaka, Y. and Ohtsuka, M. and Hashimoto, I. and Watanabe, K.}
     15448}
     15449@article{Crewe1980,
     15450  year = {1980},
     15451  title = {The physics of the high-resolution scanning microscope},
     15452  pages = {621-642},
     15453  journal = {Rep. Prog. Phys.},
     15454  volume = {43},
     15455  author = {Crewe, A.V.}
     15456}
     15457@article{Haider2008,
     15458  year = {2008},
     15459  title = {Present and Future Hexapole Aberration Correctors for High-Resolution Electron Microscopy},
     15460  pages = {43-119},
     15461  journal = {Advances in Imaging and Electron Physics},
     15462  volume = {153},
     15463  author = {Haider, M. and Mueller, H. and Uhlemann, S.}
     15464}
     15465@article{Pogany1968,
     15466  year = {1968},
     15467  title = {Reciprocity in Electron Diffraction and Microscopy},
     15468  pages = {103-109},
     15469  journal = {Acta Crystallography A},
     15470  volume = {24},
     15471  author = {Pogany, A.P. and Turner, P.S.}
     15472}
     15473@article{Sasaki2010,
     15474  year = {2010},
     15475  title = {Performance of low-voltage STEM/TEM with delta corrector and cold field emission gun},
     15476  journal = {Journal of Electron Microscopy},
     15477  author = {Sasaki, T. and Sawada, H. and Hosokawa, F. and Kohno, Y. and Tomita, T. and Kaneyama, T. and Kondo, Y. and Kimoto, K. and Sato, Y. and Suenaga, K.}
     15478}
     15479@article{Muller2008,
     15480  year = {2008},
     15481  title = {Atomic-Scale Chemical Imaging of Composition and Bonding by Aberration-Corrected Microscopy},
     15482  pages = {1073-1076},
     15483  journal = {Science},
     15484  volume = {319},
     15485  author = {Muller, D.A. and Fitting Kourkoutis, L. and Murfitt, M. and Song, J.H. and Hwang, H.Y. and Silcox, J. and Dellby, N. and Krivanek, O.L.}
     15486}
     15487@article{Meyer2008,
     15488  year = {2008},
     15489  title = {Imaging and dynamics of light atoms and molecules on graphene},
     15490  pages = {319-323},
     15491  journal = {Nature},
     15492  volume = {454},
     15493  author = {Meyer, J.C. and Girit, C.O. and Crommie, M.F. and Zettl, A.}
     15494}
     15495@article{Muller2006,
     15496  year = {2006},
     15497  title = {Room design for high-performance electron microscopy},
     15498  pages = {1033-1040},
     15499  journal = {Ultramicroscopy},
     15500  volume = {106},
     15501  author = {Muller, D.A. and Kirkland, E.J. and Thomas, M.G. and Grazul, J.L. and Fitting, L. and Weyland, M.}
     15502}
     15503@article{Xing2009,
     15504  year = {2009},
     15505  title = {A rapid method to correct objective lens astigmatism in a TEM},
     15506  pages = {287-290},
     15507  journal = {Ultramicroscopy},
     15508  volume = {109},
     15509  author = {Xing, Q. and Lograsso, T.A.}
     15510}
     15511@article{Nellist1998a,
     15512  year = {1998},
     15513  title = {Accurate structure determination from image reconstruction in {ADF} {STEM}},
     15514  pages = {159-170},
     15515  journal = {Journal of Microscopy},
     15516  volume = {1-2},
     15517  author = {Nellist, P.D. and Pennycook, S.J.}
     15518}
     15519@article{Schaffer2009,
     15520  year = {2009},
     15521  title = {High-resolution surface plasmon imaging of gold nanoparticles by energy-filtered transmission electron microscopy},
     15522  pages = {041401},
     15523  journal = {Physical Review B},
     15524  volume = {79},
     15525  author = {Schaffer, B. and Hohenester, U. and Truegler, A. and Hofer, F.}
     15526}
     15527@inproceedings{Rieger2008,
     15528  month = {September 1-5},
     15529  year = {2008},
     15530  title = {Method to determine image sharpness and resolution
     15531in Scanning Electron Microscopy images},
     15532  booktitle = {EMC 2008, Vol.1: Instrumentation and Methods},
     15533  pages = {613-614},
     15534  editor = {Luysberg, M. and Tillmann, K. and Weirich, T.},
     15535  address = {Berline},
     15536  publisher = {Springer Verlag},
     15537  author = {Rieger, B. and Veen, G.N.A. van}
     15538}
     15539@mastersthesis{Smith2009,
     15540  year = {2009},
     15541  title = {Improving single molecule
     15542fluorescence superresolution techniques},
     15543  school = {Delft University of Technology},
     15544  author = {Smith, S.C.}
     15545}
     15546@mastersthesis{Vroonland2010,
     15547  month = {June},
     15548  year = {2010},
     15549  title = {Superresolution Using Blinking Emitters},
     15550  address = {Delft, The Netherlands},
     15551  school = {Delft University of Technology},
     15552  author = {Vroonland, S.}
     15553}
     15554@article{Hell2009,
     15555  year = {2009},
     15556  title = {Microscopy and its focal switch},
     15557  pages = {24-32},
     15558  journal = {Nature Methods},
     15559  volume = {6},
     15560  author = {Hell, S.W.}
     15561}
     15562@article{Small2009,
     15563  number = {2},
     15564  year = {2009},
     15565  title = {Theoretical Limits on Errors and Acquisition Rates in Localizing Switchable Fluorophores},
     15566  pages = {L16-L18},
     15567  journal = {Biophysical Journal - Biophysical Letters},
     15568  volume = {92},
     15569  author = {Small, A.R.}
     15570}
     15571@article{Podczeck1997,
     15572  year = {1997},
     15573  title = {A shape factor to assess the shape of particles using image analysis},
     15574  pages = {47-53},
     15575  journal = {Powder Technology},
     15576  volume = {93},
     15577  author = {Podczeck, F.}
     15578}
     15579@article{Shaner2004,
     15580  number = {12},
     15581  year = {2004},
     15582  title = {Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein},
     15583  pages = {1567-1672},
     15584  journal = {Nature Biotechnology},
     15585  volume = {22},
     15586  author = {Shaner, N.C. and Campbell, R.E. and Steinbach, P.A. and Giepmans, B.N.G. and Palmer, A.E. and Tsien, R.Y.}
     15587}
     15588@article{Sader2010,
     15589  year = {2010},
     15590  title = {Quantitative analysis of image contrast in phase contrast {STEM} for low dose imaging},
     15591  pages = {1324-1331},
     15592  journal = {Ultramicroscopy},
     15593  volume = {110},
     15594  author = {Sader, K. and Brown, A. and Brydon, R. and Bleloch, A.}
     15595}
     15596@article{Aert2010,
     15597  year = {2010},
     15598  title = {Linear versus non-linear structural information limit in high-resolution transmission electron microscopy},
     15599  pages = {1404-1410},
     15600  journal = {Ultramicroscopy},
     15601  volume = {110},
     15602  author = {Aert, s. van and Chen, J.H. and Dyck, D. van}
     15603}
     15604@article{Donzel2001,
     15605  number = {{15}},
     15606  year = {2001},
     15607  title = {{Hydrophilic Poly(dimethylsiloxane) Stamps for Microcontact Printing}},
     15608  journal = {{Advanced Materials}},
     15609  volume = {{13}},
     15610  author = {Donzel, Christian and Geissler, Matthias and Bernard, Andr\\\'e and Wolf, Heiko and Michel, Bruno and Hilborn, J\\\"ons and Delamarche, Emmanuel}
     15611}
     15612@article{Wang1997,
     15613  number = {{3}},
     15614  year = {1997},
     15615  title = {{Stretching DNA with Optical Tweezers}},
     15616  pages = {{1335-1346}},
     15617  journal = {{Biophysical Journal}},
     15618  volume = {{72}},
     15619  author = {Wang, Michelle D. and Yin, Hong and Landick, Robert and Gelles, Jeff and Block, Steven M.}
     15620}
     15621@article{Blanchard1999,
     15622  number = {{32}},
     15623  year = {1999},
     15624  title = {{Simultaneous multiplane imaging with a distorted diffraction grating}},
     15625  pages = {{6692-6699}},
     15626  journal = {{Applied Optics}},
     15627  volume = {{38}},
     15628  author = {Blanchard, Paul M.
     15629 Greenaway, Alan H.}
     15630}
     15631@article{Eversole2007,
     15632  year = {2007},
     15633  title = {{Plasmonic laser nanoablation of silicon by the scattering of femtosecond pulses near gold nanospheres}},
     15634  pages = {{283-291}},
     15635  journal = {{Applied Physics A}},
     15636  volume = {{89}},
     15637  author = {Eversole, D. and Luk'Yanchuk, B. and Ben-Yakar, A.}
     15638}
     15639@article{Dessinges2002,
     15640  number = {{24}},
     15641  year = {2002},
     15642  title = {{Stretching Single Stranded DNA, a Model Polyelectrolyte}},
     15643  pages = {{248102-248106}},
     15644  journal = {{Physical Review Letters}},
     15645  volume = {{89}},
     15646  author = {Dessinges, M. N. and Maier, B. and Zhang, Y. and Peliti, M. and Bensimon, D. and Croquette, V.}
     15647}
     15648@article{Taylor1990,
     15649  number = {{2}},
     15650  year = {1990},
     15651  title = {{Application of the Method of Phage T4 DNA Ligase-catalyzed Ring-closure to the Study of DNA Structure}},
     15652  pages = {{363-376}},
     15653  journal = {{Journal of Molecular Biology}},
     15654  volume = {{212}},
     15655  author = {Taylor, William H. and Hagerman, Paul J.}
     15656}
     15657@article{Uhlenbeck1930,
     15658  year = {1930},
     15659  title = {{On the Theory of the Brownian Motion}},
     15660  journal = {{Physical Review}},
     15661  volume = {{36}},
     15662  author = {Uhlenbeck, G.E. and Ornstein, L.S.}
     15663}
     15664@article{Yguerabide2001,
     15665  number = {{S37}},
     15666  year = {2001},
     15667  title = {{Resonance Light Scattering Particles as Ultrasensitive Labels for Detection of Analytes in a Wide Range of Applications}},
     15668  pages = {{71-81}},
     15669  journal = {{Journal of Cellular Biochemistry Supplement}},
     15670  volume = {{84}},
     15671  author = {Yguerabide, Juan and Yguerabide, Evangelina E.}
     15672}
     15673@article{Samuel2002,
     15674  year = {2002},
     15675  title = {{Elasticity of semiflexible polymers}},
     15676  pages = {{050801}},
     15677  journal = {{Physical Review E}},
     15678  volume = {{66}},
     15679  author = {Samuel, Joseph and Sinha, Supurna}
     15680}
     15681@article{Porschke1991,
     15682  year = {1991},
     15683  title = {{Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations}},
     15684  pages = {{169-179}},
     15685  journal = {{Biophysical Chemistry}},
     15686  volume = {{40}},
     15687  author = {Porschke, Dietmar}
     15688}
     15689@article{Schutz2000,
     15690  number = {{1}},
     15691  year = {2000},
     15692  title = {{3D Imaging of Individual Ion Channels in Live Cells at 40 nm Resolution}},
     15693  pages = {{25-31}},
     15694  journal = {{Single Molecules}},
     15695  volume = {{1}},
     15696  author = {Sch\\\"utz, Gerhard J. and Pastushenko, Vassili, Ph. and Gruber, Hermann J. and Knaus, Hans-G\\\"unter and Pragl, Bernt and Schindler, Hansgeorg}
     15697}
     15698@incollection{Vilfan2009,
     15699  year = {2009},
     15700  title = {{Magnetic Tweezers for Single-Molecule Experiments}},
     15701  booktitle = {{Springer Handbook of Single-Molecule Biophysics}},
     15702  editor = {Hinterdorfer, P. and A., van Oijen},
     15703  publisher = {{Springer Science+Business Media}},
     15704  author = {Vilfan, I.D. and Lipfert, J. and Koster, D.A. and Lemay, S.G. and Dekker, N.H.}
     15705}
     15706@article{Dvorak2003,
     15707  number = {{2}},
     15708  year = {2003},
     15709  title = {{Approaches to Messenger RNA Detection - Comparison of Methods}},
     15710  pages = {{131-135}},
     15711  journal = {{Biomedical Papers}},
     15712  volume = {{147}},
     15713  author = {Dvor\\\'ak, Zdenek and Pascussi, Jean-Marc and Modriansk\\\'y, Martin}
     15714}
     15715@article{Medalion2010,
     15716  number = {{4}},
     15717  year = {2010},
     15718  title = {{Coupling of twist and writhe in short DNA loops
     15719 }},
     15720  pages = {{045101}},
     15721  journal = {{The Journal of Chemical Physics}},
     15722  volume = {{132}},
     15723  author = {Medalion, Shlomi and Rappaport, Shay M. and Rabin, Yitzhak}
     15724}
     15725@article{Cherif2006,
     15726  number = {{2}},
     15727  year = {2006},
     15728  title = {{Clinically Related Protein-Peptide Interactions Monitored in Real Time on Novel Peptide Chips by Surface Plasmon Resonance Imaging}},
     15729  pages = {{255-262}},
     15730  journal = {{Clinical Chemistry}},
     15731  volume = {{52}},
     15732  author = {Cherif, Boutheina and Roget, Andr\\\'e and Villiers, Christian L. and Calemczuk, Roberto and Leroy, Vincent and Marche, Patrice N. and Livache, Thierry and Villiers, Marie-Bernadette}
     15733}
     15734@article{Gibson1991,
     15735  number = {{10}},
     15736  year = {1991},
     15737  title = {{Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy}},
     15738  pages = {{1601-1613}},
     15739  journal = {{Journal of the Optical Society of America A}},
     15740  volume = {{8}},
     15741  author = {Gibson, Sarah Frisken and Lanni, Frederick}
     15742}
     15743@misc{Bouchiat2007,
     15744  year = {2007},
     15745  title = {{Spatial Constraint Corrections to the Elasticity of dsDNA Measured with Magnetic Tweezers}},
     15746  author = {Bouchiat, C.}
     15747}
     15748@article{Bouchiat2006,
     15749  number = {{03}},
     15750  year = {2006},
     15751  title = {{Entropic elasticity of double-strand DNA subject to simple spatial constraints}},
     15752  pages = {{P03019}},
     15753  journal = {{Journal of Statistical Mechanics: Theory and Experiment}},
     15754  author = {Bouchiat, C.}
     15755}
     15756@article{Yoshinaga2002,
     15757  number = {{22}},
     15758  year = {2002},
     15759  title = {{Multiscaling in a long semiflexible polymer chain in two dimensions}},
     15760  journal = {{Journal of Chemical Physics}},
     15761  volume = {{116}},
     15762  author = {Yoshinaga, Natsuhiko and Yoshikawa, Kenichi and Kidoaki, Satoru}
     15763}
     15764@article{Sottas1999,
     15765  year = {1999},
     15766  title = {{Brownian Dynamics Simulation of DNA Condensation}},
     15767  pages = {{1858-1870}},
     15768  journal = {{Biophysical Journal}},
     15769  volume = {{77}},
     15770  author = {Sottas, Pierre-Edouard and Larquet, Eric and Stasiak, Andrzej and Dubochet, Jacques}
     15771}
     15772@article{Yamakawa1976a,
     15773  number = {{12}},
     15774  year = {1976},
     15775  title = {{Statistical mechanics of helical wormlike chains. I. Differential equations and moments}},
     15776  pages = {{5222-5228}},
     15777  journal = {{The Journal of Chemical Physics}},
     15778  volume = {{64}},
     15779  author = {Yamakawa, Hiromi and Fujii, Motoharu}
     15780}
     15781@article{Odijk1979,
     15782  year = {1979},
     15783  title = {{On the Ionic-Strength Dependence of the Intrinsic Viscosity of DNA}},
     15784  pages = {{3111-3113}},
     15785  journal = {{Biopolymers}},
     15786  volume = {{18}},
     15787  author = {Odijk, Theo}
     15788}
     15789@article{Sheppard1997,
     15790  number = {{3}},
     15791  year = {1997},
     15792  title = {{Effects of specimen refractive index on confocal imaging}},
     15793  pages = {{366-374}},
     15794  journal = {{Journal of Microscopy}},
     15795  volume = {{185}},
     15796  author = {Sheppard, C. J. R. and T\\\"or\\\"ok, P.}
     15797}
     15798@article{Vologodskii1994,
     15799  number = {{20}},
     15800  year = {1994},
     15801  title = {{DNA Extension under the Action of an External Force}},
     15802  pages = {{5623-5625}},
     15803  journal = {{Macromolecules}},
     15804  volume = {{27}},
     15805  author = {Vologodskii, Alexander}
     15806}
     15807@article{Rayleigh1919,
     15808  year = {1919},
     15809  title = {{On the problem of random vibrations, and of random flights in one, two, or three dimensions}},
     15810  pages = {{321-347}},
     15811  journal = {{Philosophical Magazine}},
     15812  volume = {{37}},
     15813  author = {Rayleigh, Lord}
     15814}
     15815@article{Lukic2007,
     15816  year = {2007},
     15817  title = {{Motion of a colloidal particle in an optical trap}},
     15818  pages = {{011112}},
     15819  journal = {{Physical Review E}},
     15820  volume = {{76}},
     15821  author = {{Luki\c{c}}, B. and Jeney, S. and Sviben, Z. and Kulik, A. and Florin, E.-L. and {Forr\'o}, L.}
     15822}
     15823@article{Storm2003a,
     15824  number = {{5}},
     15825  year = {2003},
     15826  title = {{The bend stiffness of S-DNA}},
     15827  pages = {{760-766}},
     15828  journal = {{Europhysics Letters (EPL)}},
     15829  volume = {{62}},
     15830  author = {Storm, C. and Nelson, P. C.}
     15831}
     15832@article{Odijk1977,
     15833  year = {1977},
     15834  title = {{Polyelectrolytes near the Rod Limit}},
     15835  pages = {{477-483}},
     15836  journal = {{Journal of Polymer Science: Polymer Physics Edition}},
     15837  volume = {{15}},
     15838  author = {Odijk, Theo}
     15839}
     15840@article{Beausang2007b,
     15841  year = {2007},
     15842  title = {{Diffusive hidden Markov model characterization of DNA looping dynamics in tethered particle experiments}},
     15843  journal = {{Physical Biology}},
     15844  author = {Beausang, John F. and Nelson, Philip C.}
     15845}
     15846@article{Fixman1973,
     15847  number = {{4}},
     15848  year = {1973},
     15849  title = {{Polymer conformational statistics. I. Probability distribution}},
     15850  pages = {{1553-1558}},
     15851  journal = {{The Journal of Chemical Physics}},
     15852  volume = {{58}},
     15853  author = {Fixman, Marshall and Alben, Richard}
     15854}
     15855@article{Gupta1993,
     15856  number = {{2}},
     15857  year = {1993},
     15858  title = {{Mean-field theory of phase transitions in liquid-crystalline polymers}},
     15859  pages = {{1588-1596}},
     15860  journal = {{Journal of Chemical Physics}},
     15861  volume = {{98}},
     15862  author = {Gupta, Anshu M. and Edwards, Sam F.}
     15863}
     15864@article{Butler2005,
     15865  year = {2005},
     15866  title = {{Brownian dynamics simulations of a flexible polymer chain which includes continuous resistance and multibody hydrodynamic interactions}},
     15867  journal = {{The Journal of Chemical Physics}},
     15868  volume = {{122}},
     15869  author = {Butler, Jason E. and Shaqfeh, Eric S.G.}
     15870}
     15871@article{Csiszar1991,
     15872  number = {{4}},
     15873  year = {1991},
     15874  title = {{Why Least Squares and Maximum Entropy? An Axiomatic Approach to Inference for Linear Inverse Problems}},
     15875  pages = {{2032-2066}},
     15876  journal = {{The Annals of Statistics}},
     15877  volume = {{19}},
     15878  author = {Csiszar, Imre}
     15879}
     15880@inproceedings{Dietrich2006,
     15881  year = {2006},
     15882  title = {{Advances in the Development of a Novel Method to be used in Proteomics using Gold Nanobeads}},
     15883  booktitle = {{Ultrasensitive and Single-Molecule Detection Technologies}},
     15884  editor = {Enderlein, J\\\"org and Gryczynski, Zygmunt K.},
     15885  volume = {{6092}},
     15886  publisher = {{Proceedings of SPIE}},
     15887  author = {Dietrich, Heidelinde R.C. and Young, Ian T. and Garini, Yuval}
     15888}
     15889@inproceedings{Dietrich2007,
     15890  year = {2007},
     15891  title = {A New Optical Method for Characterizing Single Molecule Interactions based on Dark Field Microscopy},
     15892  booktitle = {{Ultrasensitive and Single-Molecule Detection Technologies II}},
     15893  pages = {644403-1 - 64403-8},
     15894  editor = {Enderlein, J. and Gryczynski, Z.K.},
     15895  volume = {{6444}},
     15896  publisher = {{Proceedings of SPIE}},
     15897  author = {Dietrich, Heidelinde R.C. and Vermolen, Bart J. and Rieger, Bernd and Young, Ian T. and Garini, Yuval}
     15898}
     15899@article{Torok1996,
     15900  number = {{3}},
     15901  year = {1996},
     15902  title = {{Dark-field and differential phase contrast imaging modes in confocal microscopy using a half-aperture stop}},
     15903  pages = {{101-106}},
     15904  journal = {{Optik}},
     15905  volume = {{103}},
     15906  author = {T\\\"or\\\"ok, P. and Sheppard, C. J. R. and Laxzik, Z.}
     15907}
     15908@article{Dietrich2002,
     15909  number = {{1}},
     15910  year = {2002},
     15911  title = {{Relationship of Lipid Rafts to Transient Confinement Zones Detected by Single Particle Tracking}},
     15912  pages = {{274-284}},
     15913  journal = {{Biophysical Journal}},
     15914  volume = {{82}},
     15915  author = {Dietrich, Chrisian and Yang, Bing and Fujiwara, Takahiro and Kusumi, Akihiro and Jacobson, Ken}
     15916}
     15917@article{Schafer1991,
     15918  number = {{6334}},
     15919  year = {1991},
     15920  title = {{Transcription by single molecules of RNA polymerase observed by light microscopy}},
     15921  pages = {{444-448}},
     15922  journal = {{Nature}},
     15923  volume = {{352}},
     15924  author = {Schafer, Dorothy A. and Gelles, Jeff and Sheetz, Michael P. and Landick, Robert}
     15925}
     15926@book{Mazo2002,
     15927  series = {{International series of monographs on physics}},
     15928  year = {2002},
     15929  title = {{Brownian Motion: fluctuations, dynamics, and applications}},
     15930  address = {{Oxford}},
     15931  publisher = {{Clarendon Press}},
     15932  author = {Mazo, Robert M.}
     15933}
     15934@article{Deng2009,
     15935  number = {{10}},
     15936  year = {2009},
     15937  title = {{Effect of aberration on height calibration in three-dimensional localization-base microscoyp and particle tracking}},
     15938  pages = {{1886-1890}},
     15939  journal = {{Applied Optics}},
     15940  volume = {{48}},
     15941  author = {Deng, Yi. and Shaevitz, Joshua W.}
     15942}
     15943@article{Han2006,
     15944  year = {2006},
     15945  title = {{Brownian Motion of an Ellipsoid}},
     15946  journal = {{Science}},
     15947  volume = {{314}},
     15948  author = {Han, Y. and Alsayed, A.M. and Nobili, M. and Zhang, J. and Lubensky, T.C. and Yodh, A.G.}
     15949}
     15950@article{Dietrich2009,
     15951  year = {2009},
     15952  title = {Tethered Particle Motion Mediated by Scattering from Gold Nanoparticles and Darkfield Microscopy},
     15953  pages = {{031795}},
     15954  journal = {{Journal of Nanophotonics}},
     15955  volume = {{3}},
     15956  author = {Dietrich, Heidelinde R. C. and Rieger, Bernd and Wiertz, Frank G.M. and de Groote, Frederik H. and Heering, Hendrik A. and Young, Ian T. and Garini, Yuval}
     15957}
     15958@article{Shaevitz2007,
     15959  number = {{9}},
     15960  year = {2007},
     15961  title = {{Enhanced three-dimensional deconvolution microscopy using a measured depth-varying point-spread function}},
     15962  pages = {{2622-2627}},
     15963  journal = {{Journal of the Optical Society of America A}},
     15964  volume = {{24}},
     15965  author = {Shaevitz, Joshua W. and Fletcher, Daniel A.}
     15966}
     15967@book{Doi1986,
     15968  year = {1986},
     15969  title = {{The Theory of Polymer Dynamics}},
     15970  address = {{New York}},
     15971  publisher = {{Oxford University Press}},
     15972  author = {Doi, M. and Edwards, S.F. }
     15973}
     15974@article{Dhar2002,
     15975  number = {{6}},
     15976  year = {2002},
     15977  title = {{Triple Minima in the Free Energy of Semiflexible Polymers}},
     15978  pages = {{065502}},
     15979  journal = {{Physical Review Letters}},
     15980  volume = {{89}},
     15981  author = {Dhar, Abhishek and Chaudhuri, Debasish}
     15982}
     15983@article{Watkins2004,
     15984  number = {{6}},
     15985  year = {2004},
     15986  title = {{Information Bounsd and Optimal Analysis of Dynamic Single Molecule Measurements}},
     15987  pages = {{4015-4029}},
     15988  journal = {{Biophysical Journal}},
     15989  volume = {{86}},
     15990  author = {Watkins, Lucas P. and Yang, Haw}
     15991}
     15992@article{Elburg2007,
     15993  number = {{1}},
     15994  year = {2007},
     15995  title = {{Improved correction of axial geometrical distortion in index-mismatched fluorescent confocal microscopic images using high-aperture objective lenses}},
     15996  pages = {{45-54}},
     15997  journal = {{Journal of Microscopy}},
     15998  volume = {{228}},
     15999  author = {Elburg, H.J. van and Kuypers, L.C. and Decraemer, W.F. and Dirckx, J.J.J.}
     16000}
     16001@phdthesis{Li2006,
     16002  year = {2006},
     16003  title = {{DNA entropic elasticity for short molecules attached to beads}},
     16004  author = {Li, Jinyu and Nelson, Philip C. and Betterton, M.D.}
     16005}
     16006@book{Cohen1988,
     16007  series = {{Statistics: Textbooks and monographs}},
     16008  year = {1988},
     16009  title = {{Parameter estimation in reliability and life span models}},
     16010  volume = {{96}},
     16011  address = {{New York}},
     16012  publisher = {{Marcel Dekker, Inc}},
     16013  author = {Cohen, A. Clifford and Whitten, Betty Jones}
     16014}
     16015@article{Cocco2002,
     16016  year = {2002},
     16017  title = {{Theoretical models for single-molecule DNA and RNA experiments: from elasticity to unzipping}},
     16018  pages = {{569-584}},
     16019  journal = {{Comptes rendus de l'Academie des Sciences Physique}},
     16020  volume = {{3}},
     16021  author = {Cocco, S. and Marko, J.F. and Monasson, R.}
     16022}
     16023@article{Cocco2003,
     16024  year = {2003},
     16025  title = {{Force-extension behavior of folding polymers}},
     16026  pages = {{249-263}},
     16027  journal = {{The European Physical Journal E}},
     16028  volume = {{10}},
     16029  author = {Cocco, S. and Marko, J.F. and Monasson, R. and Sarkar, A. and Yan, J.}
     16030}
     16031@article{Hughes2001,
     16032  year = {2001},
     16033  title = {{DNA microarrays for expression profiling}},
     16034  pages = {{21-25}},
     16035  journal = {{Current Opinion in Chemical Biology}},
     16036  volume = {{5}},
     16037  author = {Hughes, Timothy R. and Shoemaker, Daniel D.}
     16038}
     16039@article{Tinland1997,
     16040  number = {{19}},
     16041  year = {1997},
     16042  title = {{Persistence Length of Single-Stranded DNA}},
     16043  pages = {{5763-5765}},
     16044  journal = {{Macromolecules}},
     16045  volume = {{30}},
     16046  author = {Tinland, Bernard and Pluen, Alain and Sturm, Jean and Weill, Gilbert}
     16047}
     16048@article{Massey1951,
     16049  year = {1951},
     16050  title = {{The Kolmogorov-Smirnov test for goodness of fit}},
     16051  pages = {{68-78}},
     16052  journal = {{Journal of the American Statistical Association}},
     16053  volume = {{46}},
     16054  author = {Massey, Frank J., Jr.}
     16055}
     16056@article{Burkhardt1993,
     16057  year = {1993},
     16058  title = {{Semiflexible polymer in the half plane and statistics of the integral of a Brownian curve}},
     16059  pages = {{L1157-L1162}},
     16060  journal = {{Journal of Physics A: Mathematical and General}},
     16061  volume = {{26}},
     16062  author = {Burkhardt, Theodore W.}
     16063}
     16064@article{Stepanow2002,
     16065  number = {{4}},
     16066  year = {2002},
     16067  title = {{The distribution function of a semiflexible polymer and random walks with constraints}},
     16068  pages = {{546-551}},
     16069  journal = {{Europhysics Letters (EPL)}},
     16070  volume = {{60}},
     16071  author = {Stepanow, S. and Sch\\\"utz, G. M.}
     16072}
     16073@article{Smith1992,
     16074  number = {{5085}},
     16075  year = {1992},
     16076  title = {{Direct Mechanical Measurement of the Elasticity of Single DNA Molecules by Using Magnetic Beads}},
     16077  pages = {{1122-1126}},
     16078  journal = {{Science}},
     16079  volume = {{258}},
     16080  author = {Smith, Steven B. and Finzi, Laura and Bustamante, Carlos}
     16081}
     16082@article{Bao2002,
     16083  number = {{8}},
     16084  year = {2002},
     16085  title = {{High-Sensitivity Detection of DNA Hybridization on Microarrays Using Resonance Light Scattering}},
     16086  pages = {{1792-1979}},
     16087  journal = {{Analytical Chemistry}},
     16088  volume = {{74}},
     16089  author = {Bao, Paul and Frutor, Anthony G. and Greef, Charles and Lahiri, Joydeep and Muller, Uwe and Peterson, Todd C. and Warden, Laurence and Xie, Xinying}
     16090}
     16091@article{Baumann1997,
     16092  year = {1997},
     16093  title = {{Ionic effects on the elasticity of single DNA molecules}},
     16094  pages = {{6185-6190}},
     16095  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16096  volume = {{94}},
     16097  author = {Baumann, Christoph G. and Smith, Steven B. and Bloomfield, Victor A. and Bustamante, Carlos}
     16098}
     16099@article{Vandenberg1991,
     16100  number = {{1}},
     16101  year = {1991},
     16102  title = {{Structure of 3-aminopropyl triethoxy silane on silicon oxide}},
     16103  pages = {{103-118}},
     16104  journal = {{Journal of Colloid and Interface Science}},
     16105  volume = {{147}},
     16106  author = {Vandenberg, Elaine T. and Bertilsson, Lars and Liedberg, Bo and Uvdal, Kajsa and Erlandsson, Ragnar and Elwing, Hans and Lundstrom, Ingemar}
     16107}
     16108@article{Blumberg2005,
     16109  year = {2005},
     16110  title = {{Three-Dimensional Characterization of Tethered Microspheres by Total Internal Reflection Fluorescence Microscopy}},
     16111  pages = {{1272-1281}},
     16112  journal = {{Biophysical Journal}},
     16113  volume = {{89}},
     16114  author = {Blumberg, Seth and Gajraj, Arivalagan and Pennington, Matthew W.}
     16115}
     16116@misc{Neumann2001,
     16117  month = {January 22, 2001},
     16118  year = {2001},
     16119  title = {{Entropic Elasticity of Weakly Perturbed Polymers}},
     16120  pages = {11},
     16121  publisher = {{The Energy Institute, The Pennsylvania State University}},
     16122  author = {Neumann, Richard M.}
     16123}
     16124@article{Ommering2010,
     16125  number = {{15}},
     16126  year = {2010},
     16127  title = {{Mobility and height detection of particle labels in an optical evanescent wave biosensor with single-label resolution}},
     16128  pages = {{155501}},
     16129  journal = {{Journal of Physics D: Applied Physics}},
     16130  volume = {{43}},
     16131  author = {van Ommering, Kim and Somers, Philip A. and Koets, Marjo and Schleipen, Jean J.H.B. and van Ijzendoorn, Leo J. and Prins, Menno W.J.}
     16132}
     16133@article{Heaton2001,
     16134  number = {{7}},
     16135  year = {2001},
     16136  title = {{Electrostatic surface plasmon resonance: Direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches}},
     16137  pages = {{3701-3704}},
     16138  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16139  volume = {{98}},
     16140  author = {Heaton, Richard J. and Peterson, Alexander W. and Georgiadis, Rosina M.}
     16141}
     16142@article{Gobush1972,
     16143  number = {{7}},
     16144  year = {1972},
     16145  title = {{Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior}},
     16146  pages = {{2839-2843}},
     16147  journal = {{The Journal of Chemical Physics}},
     16148  volume = {{57}},
     16149  author = {Gobush, William and Yamakawa, Hiromi and Stockmayer, W. H. and Magee, W. S.}
     16150}
     16151@article{Henderson2001,
     16152  number = {{4}},
     16153  year = {2001},
     16154  title = {{Exploring the Confidence Interval for a Binomial Parameter in a First Course in Statistical Computing}},
     16155  pages = {{337-344}},
     16156  journal = {{The American Statistician}},
     16157  volume = {{55}},
     16158  author = {Henderson, Michael and Meyer, Mary C.}
     16159}
     16160@article{Winkler1994,
     16161  number = {{9}},
     16162  year = {1994},
     16163  title = {{Models and equilibrium properties of stiff molecular chains}},
     16164  pages = {{8119-8129}},
     16165  journal = {{journal of Chemical Physics}},
     16166  volume = {{101}},
     16167  author = {Winkler, Roland G. and Reineker, Peter and Harnau, Ludger}
     16168}
     16169@article{William1972,
     16170  number = {{7}},
     16171  year = {1972},
     16172  title = {{Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior}},
     16173  pages = {{2839-2843}},
     16174  journal = {{The Journal of Chemical Physics}},
     16175  volume = {{57}},
     16176  author = {William, Gobush and Hiromi, Yamakawa and Stockmayer, W. H. and Magee, W. S.}
     16177}
     16178@article{Peterlinz1997,
     16179  year = {1997},
     16180  title = {{Observation of Hybridization and Dehybridization of Thiol-Tethered DNA Using Two-Color Surface Plasmon Resonance Spectroscopy}},
     16181  pages = {{3401-3402}},
     16182  journal = {{Journal of the American Chemical Society}},
     16183  volume = {{119}},
     16184  author = {Peterlinz, Kevin A. and Georgiadis, Rosina M. and Herne, Tonya M. and Tarlov, Michael J.}
     16185}
     16186@article{Morriss2010,
     16187  number = {{3}},
     16188  year = {2010},
     16189  title = {{A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality}},
     16190  pages = {{035105}},
     16191  journal = {{The Journal of Chemical Physics}},
     16192  volume = {{132}},
     16193  author = {Morriss-Andrews, Alex and Rottler, Joerg and Plotkin, Steven S.}
     16194}
     16195@article{Chandrasekhar1943,
     16196  number = {{1}},
     16197  year = {1943},
     16198  title = {{Stochastic Problems in Physics and Astronomy}},
     16199  pages = {{2-87}},
     16200  journal = {{Revieuws of Modern Physics}},
     16201  volume = {{15}},
     16202  author = {Chandrasekhar, S.}
     16203}
     16204@inproceedings{Ram2005,
     16205  series = {{Proceedings of SPIE}},
     16206  year = {2005},
     16207  title = {{How accurately can a single molecule be localized in three dimensions using a fluorescence microscope?}},
     16208  booktitle = {{Imaging, Manipulation and Analysis of Biomolecule and Cells: Fundamentals and Applications III}},
     16209  pages = {426-435},
     16210  volume = {{5699}},
     16211  author = {Ram, Sripad and Ward, E. Sally and Ober, Raimond J.}
     16212}
     16213@book{Papoulis1991,
     16214  series = {{McGraw-Hill series in electrical engineering, Communications and signal processing}},
     16215  edition = {{Third edition}},
     16216  year = {1991},
     16217  title = {{Probability, random variables, and stochastic processes}},
     16218  address = {{Singapore}},
     16219  publisher = {{McGraw-Hill}},
     16220  author = {Papoulis, Athanasios}
     16221}
     16222@inproceedings{Ram2007,
     16223  year = {2007},
     16224  title = {{A novel approach to determining the three-dimensional location of microscopic objects with applications to 3D particle tracking}},
     16225  booktitle = {{Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIV}},
     16226  pages = {64430D},
     16227  editor = {Conchello, Jose-Angel and Cogswell, Carol J. and Wilson, Tony},
     16228  volume = {{6443}},
     16229  publisher = {{Proceedings of SPIE}},
     16230  author = {Ram, Sripad and Chao, Jerry and Prabhat, Prashant and Ward, E. Sally and Ober, Raimond J.}
     16231}
     16232@article{Wu2005,
     16233  year = {2005},
     16234  title = {{Three-dimensional fluorescent particle tracking at micron-scale using a single camera}},
     16235  pages = {{461-465}},
     16236  journal = {{Experiments in Fluids}},
     16237  volume = {{38}},
     16238  author = {Wu, Mingming and Roberts, John W. and Buckley, Mark}
     16239}
     16240@article{Maier2000,
     16241  number = {{22}},
     16242  year = {2000},
     16243  title = {{Replication by a single DNA polymerase of a stretched single-stranded DNA}},
     16244  pages = {{12002-12007}},
     16245  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16246  volume = {{97}},
     16247  author = {Maier, Berenike and Bensimon, David and Croquette, Vincent}
     16248}
     16249@misc{Odijk2005,
     16250  month = {August 4, 2005},
     16251  year = {2005},
     16252  title = {{Note on DNA grafted to a surface (experiments Heidi Dietrich, TU Delft)}},
     16253  author = {Odijk, Theo}
     16254}
     16255@article{Zimm1956,
     16256  number = {{2}},
     16257  year = {1956},
     16258  title = {{Dynamics of Polymer Molecules in Dilute Solution: Viscoelasticity, Flow Birefringence and Dielectric Loss}},
     16259  pages = {{269-278}},
     16260  journal = {{The Journal of Chemical Physics}},
     16261  volume = {{24}},
     16262  author = {Zimm, Bruno H.}
     16263}
     16264@article{Sadr2007,
     16265  year = {2007},
     16266  title = {{Diffusion-induced bias in near-wall velocimetry}},
     16267  pages = {{443-456}},
     16268  journal = {{Journal of Fluid Mechanics}},
     16269  volume = {{577}},
     16270  author = {Sadr, Reza and Hohenegger, Christel and Li, Haifeng and Mucha, Peter J. and Yoda, Minami}
     16271}
     16272@article{Qian2000b,
     16273  number = {{1}},
     16274  year = {2000},
     16275  title = {{Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials}},
     16276  pages = {{137-143}},
     16277  journal = {{Biophysical Journal}},
     16278  volume = {{79}},
     16279  author = {Qian, Hong}
     16280}
     16281@article{Pirrung2002,
     16282  number = {{8}},
     16283  year = {2002},
     16284  title = {{How to Make a DNA Chip}},
     16285  pages = {{1276-1289}},
     16286  journal = {{Angewandte Chemie International Edition}},
     16287  volume = {{41}},
     16288  author = {Pirrung, Michael C.}
     16289}
     16290@article{Marko2003,
     16291  number = {{3}},
     16292  year = {2003},
     16293  title = {{The micromechanics of DNA}},
     16294  journal = {{Physics World}},
     16295  volume = {{16}},
     16296  author = {Marko, John F. and Cocco, Simona}
     16297}
     16298@article{Qian2000a,
     16299  number = {{4}},
     16300  year = {2000},
     16301  title = {{A mathematical analysis for the Brownian dynamics of a DNA tether}},
     16302  pages = {{331-340}},
     16303  journal = {{Journal of Mathematical Biology}},
     16304  volume = {{41}},
     16305  author = {Qian, Hong}
     16306}
     16307@misc{Marko2005,
     16308  month = {June 2, 2005},
     16309  year = {2005},
     16310  title = {{Introduction to Single-DNA Micromechanics}},
     16311  pages = {63},
     16312  publisher = {{Department of Physics, University of Illinois at Chicago}},
     16313  author = {Marko, J.F.}
     16314}
     16315@article{Schaefer1980,
     16316  number = {{5}},
     16317  year = {1980},
     16318  title = {{Dynamics of Semiflexible Polymers in Solution}},
     16319  pages = {{1280-1289}},
     16320  journal = {{Macromolecules}},
     16321  volume = {{13}},
     16322  author = {Schaefer, D.W. and Joanny, J.F. and Pincus, P.}
     16323}
     16324@article{Zurla2006,
     16325  year = {2006},
     16326  title = {{Novel tethered particle motion analysis of CI protein-mediated DNA looping in the regulation of bacteriophage lambda}},
     16327  pages = {{S225-S234}},
     16328  journal = {{Journal of Physics: Condensed Matter}},
     16329  volume = {{18}},
     16330  author = {Zurla, C. and Franzini, A. and Galli, G. and Dunlap, D. D. and Lewis, D. E. A. and Adhya, S. and Finzi, L.}
     16331}
     16332@article{Prabhat2007,
     16333  number = {{14}},
     16334  year = {2007},
     16335  title = {{Elucidation of intracellular recycling pathways leading to exocytosis of the Fc receptor, FcRn, by using multifocal plane microscopy}},
     16336  pages = {{5889-5894}},
     16337  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16338  volume = {{104}},
     16339  author = {Prabhat, Prashant and Gan, Zhuo and Chao, Jerry and Ram, Sripad and Vaccaro, Carlos and Gibbons, Steven and Ober, Raimond J. and Ward, E. Sally}
     16340}
     16341@inproceedings{Prabhat2006,
     16342  year = {2006},
     16343  title = {{Simultaneous imaging of several focal planes in fluorescence microscopy for the study of cellular dynamics in 3D}},
     16344  booktitle = {{Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIII}},
     16345  pages = {60900L},
     16346  editor = {Conchello, Jose-Angel and Cogswell, Carol J. and Wilson, Tony},
     16347  volume = {{6090}},
     16348  publisher = {{Proceedings of SPIE}},
     16349  author = {Prabhat, Prashant and Ram, Sripad and Ward, E. Sally and Ober, Raimond J.}
     16350}
     16351@article{Marko1994,
     16352  number = {{5171}},
     16353  year = {1994},
     16354  title = {{Fluctuations and Supercoiling of DNA}},
     16355  pages = {{506-508}},
     16356  journal = {{Science}},
     16357  volume = {{265}},
     16358  author = {Marko, John F. and Siggia, Eric D.}
     16359}
     16360@article{Marko1995,
     16361  number = {{26}},
     16362  year = {1995},
     16363  title = {{Stretching DNA}},
     16364  pages = {{8759-8770}},
     16365  journal = {{Macromolecules}},
     16366  volume = {{28}},
     16367  author = {Marko, John F. and Siggia, Eric D.}
     16368}
     16369@article{Winkler1992,
     16370  number = {{24}},
     16371  year = {1992},
     16372  title = {{Finitie Size Distribution and Partition Functions of Gaussian Chains: Maximum Entropy Approach}},
     16373  pages = {{6891-6896}},
     16374  journal = {{Macromolecules}},
     16375  volume = {{25}},
     16376  author = {Winkler, R.G. and Reineker, P.}
     16377}
     16378@article{Berciaud2005,
     16379  number = {{3}},
     16380  year = {2005},
     16381  title = {{Observation of Intrinsic Size Effects in the Optical Response of Individual Gold Nanoparticles}},
     16382  pages = {{515-518}},
     16383  journal = {{Nano Letters}},
     16384  volume = {{5}},
     16385  author = {Berciaud, St\\\'ephane and Cognet, Laurent and Tamarat, Philippe and Lounis, Brahim}
     16386}
     16387@article{Lahtinen2001,
     16388  year = {2001},
     16389  title = {{Diffusion of hard disks and rodlike molecules on surfaces}},
     16390  journal = {{Physical Review E}},
     16391  volume = {{64}},
     16392  author = {Lahtinen, J.M. and Hjelt, T. and Ala-Nissila, T. and Chvoj, Z.}
     16393}
     16394@article{Wong2006,
     16395  number = {{25}},
     16396  year = {2006},
     16397  title = {{The effect of integration time on fluctuation measurements: calibrating an optical trap in the presence of motion blur}},
     16398  pages = {{12517-12531}},
     16399  journal = {{Optics Express}},
     16400  volume = {{14}},
     16401  author = {Wong, Wesley P. and Halvorsen, Ken}
     16402}
     16403@article{Perkins1994,
     16404  year = {1994},
     16405  title = {{Relaxation of a Single DNA Molecule Observed by Optical Microscopy}},
     16406  pages = {{822-826}},
     16407  journal = {{Science}},
     16408  volume = {{264}},
     16409  author = {Perkins, Thomas T. and Quake, Stephern R. and Smith, Douglas E. and Chu, Steven}
     16410}
     16411@article{Lu2002,
     16412  year = {2002},
     16413  title = {{DNA Persistencde Length Revisited}},
     16414  pages = {{261-275}},
     16415  journal = {{Biopolymers}},
     16416  volume = {{61}},
     16417  author = {Lu, Yongjun and Weers, Brock and Stellwagen, Nancy C.}
     16418}
     16419@article{Laurens2009,
     16420  year = {2009},
     16421  title = {{Dissecting protein-induced DNA looping dynamics in real time}},
     16422  journal = {{Nucleic Acids Research}},
     16423  author = {Laurens, Niels and Bellamy, Stuart R. W. and Harms, August F. and Kovacheva, Yana S. and Halford, Stephen F. and Wuite, Gijs J. L.}
     16424}
     16425@article{Yguerabide1998b,
     16426  year = {1998},
     16427  title = {{Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. II. Experimental Characterization}},
     16428  pages = {{157-176}},
     16429  journal = {{Analytical Biochemistry}},
     16430  volume = {{262}},
     16431  author = {Yguerabide, Juan and Yguerabide, Evangelina E.}
     16432}
     16433@article{Capitanio2004,
     16434  year = {2004},
     16435  title = {{Exploring Molecular Motors and Switches at the Single-Molecule Level}},
     16436  pages = {{194-204}},
     16437  journal = {{Microscopy Research and Technique}},
     16438  volume = {{65}},
     16439  author = {Capitanio, M. and Vanzi, F. and Broggio, C. and Cicchi, R. and Normanno, D. and Romano, G. and Sacconi, L. and Pavone, F.S.}
     16440}
     16441@article{Sheppard2004,
     16442  number = {{22}},
     16443  year = {2004},
     16444  title = {{Annular pupils, radial polarization, and superresolution}},
     16445  pages = {{4322-4327}},
     16446  journal = {{Applied Optics}},
     16447  volume = {{43}},
     16448  author = {Sheppard, Colin J.R.}
     16449}
     16450@article{Zhu2006,
     16451  number = {{5}},
     16452  year = {2006},
     16453  title = {{Direct Numerical Simulation of Single-Molecule DNA by Cable Dynamics}},
     16454  pages = {{1078-1087}},
     16455  journal = {{Journal of Microelectromechanical Systems}},
     16456  volume = {{15}},
     16457  author = {Zhu, Qiang and Zeng, Jun and Triantafyllou, Michael S. and Yue, Dick K.P.}
     16458}
     16459@article{Strick1998,
     16460  year = {1998},
     16461  title = {{Behavior of Supercoiled DNA}},
     16462  pages = {{2016-2028}},
     16463  journal = {{Biophysical Journal}},
     16464  volume = {{74}},
     16465  author = {Strick, T.R. and Allemand, J.-F. and Bensimon, D. and Croquette, V.}
     16466}
     16467@article{Pouget2004,
     16468  number = {{9}},
     16469  year = {2004},
     16470  title = {{Single-particle tracking for DNA tether length monitoring}},
     16471  journal = {{Nucleic Acids Research}},
     16472  volume = {{32}},
     16473  author = {Pouget, Noelle and Dennis, Cynthia and Turlan, Catherine and Grigoriev, Mikhail and Chandler, Michael and Salome, Laurence}
     16474}
     16475@article{Saito1967,
     16476  number = {{1}},
     16477  year = {1967},
     16478  title = {{The Statistical Mechanical Theory of Stiff Chains}},
     16479  pages = {{219-226}},
     16480  journal = {{Journal of the Physical Society of Japan}},
     16481  volume = {{22}},
     16482  author = {Saito, Nobuhiko and Takahashi, Kunihiko and Yunoki, Yasuo}
     16483}
     16484@article{Smith1996,
     16485  number = {{5250}},
     16486  year = {1996},
     16487  title = {{Overstretching B-DNA: The Elastic Response of Individual Double-Stranded and Single-Stranded DNA Molecules}},
     16488  pages = {{795-799}},
     16489  journal = {{Science}},
     16490  volume = {{271}},
     16491  author = {Smith, Steven B. and Cui, Yujia and Bustamante, Carlos}
     16492}
     16493@article{Roeffaers2007,
     16494  number = {{31}},
     16495  year = {2007},
     16496  title = {{Single-molecule fluorescence spectroscopy in (bio)catalysis}},
     16497  pages = {{12603-12609}},
     16498  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16499  volume = {{104}},
     16500  author = {Roeffaers, Maarten B.J. and De Cremer, Gert and Uji-i, Hiroshi and Muls, Beniot and Sels, Bert F. and Jacobs, Pierre A. and De Schryver, Frans C. and De Vos, Dirk E. and Hofkens, Johan}
     16501}
     16502@book{Pluta1989,
     16503  year = {1989},
     16504  title = {{Advanced Light Microscopy}},
     16505  volume = {{2: Specialized Methods}},
     16506  address = {{Amsterdam}},
     16507  publisher = {{Elsevier}},
     16508  author = {Pluta, Maksymilian}
     16509}
     16510@book{Pluta1988,
     16511  year = {1988},
     16512  title = {{Advanced Light Microscopy}},
     16513  volume = {{1: Principles and Basic Properties}},
     16514  address = {{Amsterdam}},
     16515  publisher = {{Elsevier}},
     16516  author = {Pluta, Maksymilian}
     16517}
     16518@article{Broek2006,
     16519  number = {{1}},
     16520  year = {2006},
     16521  title = {{Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI}},
     16522  pages = {{167-174}},
     16523  journal = {{Nucleic Acids Research}},
     16524  volume = {{34}},
     16525  author = {Broek, Bram van den and Vanzi, Francesco and Normanno, Davide and Pavone, Francesco S. and Wuite, Gijs J. L.}
     16526}
     16527@article{Braslavsky2003,
     16528  number = {{7}},
     16529  year = {2003},
     16530  title = {{Sequence Information can be Obtained from Single DNA Molecules}},
     16531  pages = {{3960-3964}},
     16532  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16533  volume = {{100}},
     16534  author = {Braslavsky, Ido and Hebert, Benedict and Kartalov, Emil and Quake, Stephern R.}
     16535}
     16536@article{Ariel2003,
     16537  number = {{1}},
     16538  year = {2003},
     16539  title = {{Persistence length of a strongly charged rodlike polyelectrolyte in the presence of salt}},
     16540  pages = {{011805-1-011805-11}},
     16541  journal = {{Physical Review E}},
     16542  volume = {{67}},
     16543  author = {Ariel, Gil and Andelman, David}
     16544}
     16545@article{Yamakawa1972,
     16546  number = {{7}},
     16547  year = {1972},
     16548  title = {{Statistical Mechanics of Wormlike Chains. II. Excluded Volume Effects}},
     16549  pages = {{2843-2854}},
     16550  journal = {{The Journal of Chemical Physics}},
     16551  volume = {{57}},
     16552  author = {Yamakawa, Hiromi and Stockmayer, W. H.}
     16553}
     16554@article{Davidson1995,
     16555  year = {1995},
     16556  title = {{Arrays of Uniform Latex Spheres as Test Objects in Optical Microscopy}},
     16557  pages = {{173-178}},
     16558  journal = {{Particle and Particle Systems Characterization}},
     16559  volume = {{12}},
     16560  author = {Davidson, John A.}
     16561}
     16562@article{Huisken2004,
     16563  number = {{5686}},
     16564  year = {2004},
     16565  title = {{Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy}},
     16566  pages = {{1007-1009}},
     16567  journal = {{Science}},
     16568  volume = {{305}},
     16569  author = {Huisken, Jan and Swoger, Jim and Del Bene, Filippo and Wittbrodt, Joachim and Stelzer, Ernst H. K.}
     16570}
     16571@article{Goldman1967,
     16572  number = {{4}},
     16573  year = {1967},
     16574  title = {{Slow viscous motion of a sphere parallel to a plane wall - I Motion through a quiescent fluid}},
     16575  pages = {{637-651}},
     16576  journal = {{Chemical Engineering Science}},
     16577  volume = {{22}},
     16578  author = {Goldman, A.J. and Cox, R.G. and Brenner, H.}
     16579}
     16580@article{Maher2007,
     16581  year = {2007},
     16582  title = {{Spring theory}},
     16583  pages = {{984-986}},
     16584  journal = {{Nature}},
     16585  volume = {{448}},
     16586  author = {Maher, Brendan}
     16587}
     16588@article{Cui2008,
     16589  number = {{31}},
     16590  year = {2008},
     16591  title = {{Lensless high-resolution on-chip optrofluidic microscopes for Caenorhabditis elegans and cell imaging}},
     16592  pages = {{10670-10675}},
     16593  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16594  volume = {{105}},
     16595  author = {Cui, Xiquan and Lee, Lap Man and Heng, Xin and Zhong, Weiwei and Sternberg, Paul W. and Psaltis, Demetri and Yang, Changhuei}
     16596}
     16597@article{Hagerman1988,
     16598  year = {1988},
     16599  title = {{Flexibility of DNA}},
     16600  pages = {{265-286}},
     16601  journal = {{Annual Review of Biophysics and BioEngineering}},
     16602  volume = {{17}},
     16603  author = {Hagerman, P.J.}
     16604}
     16605@article{Vanzi2006,
     16606  number = {{12}},
     16607  year = {2006},
     16608  title = {{Lac repressor hinge flexibility and DNA looping: single molecule kinetics by tethered particle motion}},
     16609  pages = {{3409-3420}},
     16610  journal = {{Nucleic Acids Research}},
     16611  volume = {{34}},
     16612  author = {Vanzi, Francesco and Broggio, Chiara and Sacconi, Leonardo and Pavone, Francesco Saverio}
     16613}
     16614@article{Bronstein2009,
     16615  number = {{1}},
     16616  year = {2009},
     16617  title = {{Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells}},
     16618  pages = {{018102}},
     16619  journal = {{Physical Review Letters}},
     16620  volume = {{103}},
     16621  author = {Bronstein, I. and Israel, Y. and Kepten, E. and Mai, S. and Shav-Tal, Y. and Barkai, E. and Garini, Y.}
     16622}
     16623@article{Bawendi1985,
     16624  number = {{5}},
     16625  year = {1985},
     16626  title = {{A Wiener integral model for stiff polymer chains}},
     16627  pages = {{2491}},
     16628  journal = {{Journal of Chemical Physics}},
     16629  volume = {{83}},
     16630  author = {Bawendi, M.G. and Freed, Karl F.}
     16631}
     16632@article{Martin2002,
     16633  number = {{4}},
     16634  year = {2002},
     16635  title = {{Apparent Subdiffusion Inherent to Single Particle Tracking}},
     16636  pages = {{2109-2117}},
     16637  journal = {{Biophysical Journal}},
     16638  volume = {{83}},
     16639  author = {Martin, Douglas S. and Forstner, Martin B. and K\\\"as, Josef A.}
     16640}
     16641@article{Savelkoul2006,
     16642  number = {{1}},
     16643  year = {2006},
     16644  title = {{Detection of Mycobacterium tuberculosis complex with Real Time PCR: Comparison of different primer-probe sets based on the IS6110 element}},
     16645  pages = {{177-180}},
     16646  journal = {{Journal of Microbiological Methods}},
     16647  volume = {{66}},
     16648  author = {Savelkoul, Paul H.M. and Catsburg, Arnold and Mulder, Sije and Oostendorp, Ludo and Schirm, Jurjen and Wilke, Hans and van der Zanden, Adri G.M. and Noordhoek, Gerda T.}
     16649}
     16650@article{Bustamante2000,
     16651  number = {{3}},
     16652  year = {2000},
     16653  title = {{Single-molecule studies of DNA mechanics}},
     16654  pages = {{279-285}},
     16655  journal = {{Current Opinion in Structural Biology}},
     16656  volume = {{10}},
     16657  author = {Bustamante, Carlos and Smith, Steven B. and Liphardt, Jan and Smith, Doug}
     16658}
     16659@article{Bustamante2003,
     16660  year = {2003},
     16661  title = {{Ten years of tension: single-molecule DNA mechanics}},
     16662  pages = {{423-427}},
     16663  journal = {{Nature}},
     16664  volume = {{421}},
     16665  author = {Bustamante, Carlos and Bryant, Zev and Smith, Steven B.}
     16666}
     16667@article{Holtzer2007,
     16668  year = {2007},
     16669  title = {Nanometric three-dimensional tracking of individual quantom dots in cells},
     16670  pages = {053902},
     16671  journal = { Applied Physics Letters},
     16672  volume = {90},
     16673  author = {Holtzer, L. and Meckel, T. and Schmidt, T.}
     16674}
     16675@article{Huang2008,
     16676  year = {2008},
     16677  title = {Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy},
     16678  pages = {810-813},
     16679  journal = {Science},
     16680  volume = {319},
     16681  author = {Huang, B. and Wang, W. and Bates, M. and Zhuang, X.}
     16682}
     16683@article{Lindner2009,
     16684  year = {2009},
     16685  title = {{Studies of Single Molecules in their Natural Form}},
     16686  pages = {{283-291}},
     16687  journal = {{Israel Journal of Chemistry}},
     16688  volume = {{49}},
     16689  author = {Lindner, Moshe and Nir, Guy and Dietrich, Heidelinde R. C. and Young, Ian T. and Tauber, Elad and Bronshtein, I. and Altman, Liat and Garini, Yuval}
     16690}
     16691@article{Wilhelm1996,
     16692  number = {{12}},
     16693  year = {1996},
     16694  title = {{Radial Distribution Function of Semiflexible Polymers}},
     16695  pages = {{2581}},
     16696  journal = {{Physical Review Letters}},
     16697  volume = {{77}},
     16698  author = {Wilhelm, Jan and Frey, Erwin}
     16699}
     16700@article{Clercx1992,
     16701  number = {{4}},
     16702  year = {1992},
     16703  title = {{Brownian particles in shear flow and harmonic potentials: A study of long-time tails}},
     16704  pages = {{1942-1950}},
     16705  journal = {{Physical Review A}},
     16706  volume = {{46}},
     16707  author = {Clercx, H.J.H. and Schram, P.P.J.M.}
     16708}
     16709@inproceedings{Subotic2004,
     16710  year = {2004},
     16711  title = {{On the Feasability of Axial Tracking of a Fluorescent Nano-Particle Using a Defocusing Model}},
     16712  booktitle = {{Proceedings IEEE International Symposium on Biomedical Imaging: From Macro to Nano}},
     16713  pages = {1231-1234},
     16714  volume = {{2}},
     16715  author = {Subotic, Nadja and van de Ville, Dimitri and Unser, Michael}
     16716}
     16717@article{Ebenstein2009,
     16718  number = {{4}},
     16719  year = {2009},
     16720  title = {Lighting Up Individual {DNA} Binding Proteins with Quantum Dots},
     16721  pages = {{1598-1603}},
     16722  journal = {{Nano Letters}},
     16723  volume = {{9}},
     16724  author = {Ebenstein, Y. and Gassman, N. and Kim, S. and Antelman, J. and Kim, Y. and Ho, S. and Samuel, R. and Michalet, X. and Weiss, S.}
     16725}
     16726@article{Harlepp2004,
     16727  number = {{17}},
     16728  year = {2004},
     16729  title = {{Subnanometric measurements of evanescent wave penetration depth using total internal reflection microscopy combined with fluorescent correlation spectroscopy}},
     16730  journal = {{Applied Physics Letters}},
     16731  volume = {{85}},
     16732  author = {Harlepp, S. and Robert, J. and Darnton, N.C. and Chateney, D.}
     16733}
     16734@inproceedings{Nguyen2000,
     16735  year = {2000},
     16736  title = {{Magnification Corrected Optical Image Splitting for Simultaneous Multiplanar Acquisition}},
     16737  booktitle = {{Optical Diagnostics of Living Cells III}},
     16738  pages = {31-40},
     16739  editor = {Farkas, Daniel L. and Leif, Robert C.},
     16740  volume = {{3921}},
     16741  publisher = {{Proceedings of SPIE}},
     16742  author = {Nguyen, Lam K. and Bravo-Zanoguera, Miguel and Kellner, Albert L. and Price, Jeffrey H.}
     16743}
     16744@article{Braslavsky2001,
     16745  number = {{31}},
     16746  year = {2001},
     16747  title = {{Objective-type dark-field illumination for scattering from microbeads}},
     16748  pages = {{5650-5667}},
     16749  journal = {{Applied Optics}},
     16750  volume = {{40}},
     16751  author = {Braslavsky, Ido and Amit, Roee and Jaffar Ali, B.M. and Gileadi, Opher and Oppenheim, Amos and Stavans, Joel}
     16752}
     16753@article{Stepanow2004,
     16754  number = {{4}},
     16755  year = {2004},
     16756  title = {{Statistical mechanics of semiflexible polymers}},
     16757  pages = {{499-512}},
     16758  journal = {{The European Physical Journal B}},
     16759  volume = {{39}},
     16760  author = {Stepanow, S.}
     16761}
     16762@article{Gelles1988,
     16763  number = {{6155}},
     16764  year = {1988},
     16765  title = {{Tracking kinesin-driven movements with nanometric-scale precision}},
     16766  pages = {{450-453}},
     16767  journal = {{Nature}},
     16768  volume = {{331}},
     16769  author = {Gelles, Jeff and Schnapp, Bruce J. and Sheetz, Michael P.}
     16770}
     16771@book{Rubinstein2006,
     16772  year = {2006},
     16773  title = {{Polymer Physics}},
     16774  address = {{New York}},
     16775  publisher = {{Oxford University Press Inc.}},
     16776  author = {Rubinstein, Michael and Colby, Ralph H.}
     16777}
     16778@article{Seol2007,
     16779  number = {{12}},
     16780  year = {2007},
     16781  title = {{Elasticity of Short DNA Molecules: Theory and Experiment for Contour Lengths of 0.6-7 um}},
     16782  pages = {{4360-4373}},
     16783  journal = {{Biophysical Journal}},
     16784  volume = {{93}},
     16785  author = {Seol, Yeonee and Li, Jinyu and Nelson, Philip C. and Perkins, Thomas T. and Betterton, M.D.}
     16786}
     16787@article{Cohen2007,
     16788  number = {{31}},
     16789  year = {2007},
     16790  title = {{Principle-component analysis of shape fluctuations of single DNA molecules}},
     16791  pages = {{12622-12627}},
     16792  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16793  volume = {{104}},
     16794  author = {Cohen, Adam E. and Moerner, W.E.}
     16795}
     16796@article{Saxton2007,
     16797  number = {{4}},
     16798  year = {2007},
     16799  title = {{A Biological Interpretation of Transient Anomalous Subdiffusion. I. Qualitative Model}},
     16800  pages = {{1178-1191}},
     16801  journal = {{Biophysical Journal}},
     16802  volume = {{92}},
     16803  author = {Saxton, Michael J.}
     16804}
     16805@article{Otto1994,
     16806  number = {{3}},
     16807  year = {1994},
     16808  title = {{Persistence lengths of semiflexible chains - Methods and approximations}},
     16809  pages = {{543-555}},
     16810  journal = {{Macromolecular Theory and Simulations}},
     16811  volume = {{3}},
     16812  author = {Otto, Matthias and Eckert, Jochen and Vilgis, Thomas A.}
     16813}
     16814@article{Vennemann2007,
     16815  number = {{3}},
     16816  year = {2007},
     16817  title = {{In vivo whole-field blood velocity measurement techniques}},
     16818  pages = {{495-511}},
     16819  journal = {{Experiments in Fluids}},
     16820  volume = {{42}},
     16821  author = {Vennemann, Peter and Lindken, Ralph and Westerweel, Jerry}
     16822}
     16823@article{Vosch2007,
     16824  number = {{31}},
     16825  year = {2007},
     16826  title = {{Strongly emissive individual DNA-encapsulated Ag nanoclusters as single-molecule fluorophores}},
     16827  pages = {{12616-12621}},
     16828  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16829  volume = {{104}},
     16830  author = {Vosch, Tom and Antoku, Yasuko and Hsiang, Jung-Cheng and Richards, Chris I. and Gonzalez, Jose I. and Dickson, Robert M.}
     16831}
     16832@article{Galletto2006,
     16833  number = {{7113}},
     16834  year = {2006},
     16835  title = {{Direct observation of individual RecA filaments assembling on single DNA molecules}},
     16836  pages = {{875-878}},
     16837  journal = {{Nature}},
     16838  volume = {{443}},
     16839  author = {Galletto, Roberto and Amitani, Ichiro and Baskin, Ronald J. and Kowalczykowski, Stephen C.}
     16840}
     16841@article{Singh-Zocchi2003,
     16842  number = {{13}},
     16843  year = {2003},
     16844  title = {{Single-molecule detection of DNA hybridization}},
     16845  pages = {{7605-7610}},
     16846  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16847  volume = {{100}},
     16848  author = {Singh-Zocchi, Mukta and Dixit, Sanhita and Ivanov, Vassili and Zocchi, Giovanni}
     16849}
     16850@article{Frej1993,
     16851  number = {{9}},
     16852  year = {1993},
     16853  title = {{Hindered diffusion of a single sphere very near a wall in a nonuniform force field}},
     16854  pages = {{7552-7564}},
     16855  journal = {{Journal of Chemical Physics}},
     16856  volume = {{98}},
     16857  author = {Frej, Nasser A. and Prieve, Dennis C.}
     16858}
     16859@article{Lagowski1991,
     16860  number = {{2}},
     16861  year = {1991},
     16862  title = {{Stiff chain model-functional integral approach}},
     16863  pages = {{1266-1296}},
     16864  journal = {{Journal of Chemical Physics}},
     16865  volume = {{95}},
     16866  author = {Lagowski, Jolanta B. and Noolandi, Jaan and Nickel, Bernie}
     16867}
     16868@article{Bednar1995,
     16869  number = {{4}},
     16870  year = {1995},
     16871  title = {{Determination of DNA Persistence Length by Cryo-electron Microscopy. Separation of the Static and Dynamic Contributions to the Apparent Persistence Length of DNA}},
     16872  pages = {{579-594}},
     16873  journal = {{Journal of Molecular Biology}},
     16874  volume = {{254}},
     16875  author = {Bednar, Jan and Furrer, Patrick and Katritch, Vsevolod and Stasiak, Alicja Z. and Dubochet, Jacques and Stasiak, Andrzej}
     16876}
     16877@article{McIntosh2009,
     16878  number = {{4}},
     16879  year = {2009},
     16880  title = {{Detailed scaling analysis of low-force polyelectrolyte elasticity}},
     16881  pages = {{041803}},
     16882  journal = {{Physical Review E}},
     16883  volume = {{80}},
     16884  author = {McIntosh, D.B. and Ribeck, N. and Saleh, O.A.}
     16885}
     16886@article{Hyeon2006b,
     16887  number = {{3}},
     16888  year = {2006},
     16889  title = {{Size, shape, and flexibility of RNA structures}},
     16890  pages = {{194905}},
     16891  journal = {{The Journal of Chemical Physics}},
     16892  volume = {{125}},
     16893  author = {Hyeon, Changbong and Dima, Ruxandra I. and Thirumalai, D.}
     16894}
     16895@article{Caarls2011,
     16896  number = {1},
     16897  year = {2011},
     16898  title = {Minimizing light exposure with the programmable array microscope},
     16899  pages = {101-110},
     16900  journal = {Journal of Microscopy},
     16901  volume = {241},
     16902  author = {Caarls, W. and Rieger, B and Vries, A.H.B. de and Arndt-Jovin, D.J. and Jovin, T.M.}
     16903}
     16904@article{Jacobsen2006,
     16905  number = {{1}},
     16906  year = {2006},
     16907  title = {{Interferometric optical detection and tracking of very small gold nanoparticles at a water-glass interface}},
     16908  pages = {{405}},
     16909  journal = {{Optics Express}},
     16910  volume = {{14}},
     16911  author = {Jacobsen, Volker and Stoller, Patrick and Brunner, Christian and Vogel, Viola and Sandoghdar, Vahid}
     16912}
     16913@article{Crut2007,
     16914  number = {{29}},
     16915  year = {2007},
     16916  title = {{Fast dynamics of supercoiled DNA revealed by single-molecule experiments}},
     16917  pages = {{11957-11962}},
     16918  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16919  volume = {{104}},
     16920  author = {Cut, Aur\\\'elien and Koster, Daniel A. and Seidel, Ralf and Wiggins, Chris H. and Dekker, Nynke H.}
     16921}
     16922@article{Yguerabide1998a,
     16923  year = {1998},
     16924  title = {{Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. I. Theory}},
     16925  pages = {{137-156
     16926 }},
     16927  journal = {{Analytical Biochemistry}},
     16928  volume = {{262}},
     16929  author = {Yguerabide, Juan and Yguerabide, Evangelina E.}
     16930}
     16931@article{Strick1998b,
     16932  number = {{3-4}},
     16933  year = {1998},
     16934  title = {{Physical Approaches to the Study of DNA}},
     16935  pages = {{647-672}},
     16936  journal = {{Journal of Statistical Physics}},
     16937  volume = {{93}},
     16938  author = {Strick, T.R. and Allemand, J.-F. and Croquette, V. and Bensimon, D.}
     16939}
     16940@article{Rechendorff2009,
     16941  number = {{9}},
     16942  year = {2009},
     16943  title = {{Persistence length and scaling properties of single-stranded DNA adsorbed on modified graphite}},
     16944  pages = {{095103}},
     16945  journal = {{Journal of Chemical Physics}},
     16946  volume = {{131}},
     16947  author = {Rechendorff, Kristian and Witz, Guillaume and Adamcik, Jozef and Dietler, Giovanni}
     16948}
     16949@article{Graff2006,
     16950  number = {{1}},
     16951  year = {2006},
     16952  title = {{Resonance Light Scattering (RLS) Detection of Nanoparticle Separations in a Microelectrical Field-Flow Fractionation System}},
     16953  pages = {{8-13}},
     16954  journal = {{IEEE Transactions on Nanotechnology}},
     16955  volume = {{5}},
     16956  author = {Graff, Mason and Frazier, A. Bruno}
     16957}
     16958@article{Kao1994,
     16959  number = {{3}},
     16960  year = {1994},
     16961  title = {{Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position}},
     16962  pages = {{1291-1300}},
     16963  journal = {{Biophysical Journal}},
     16964  volume = {{67}},
     16965  author = {Kao, H.P. and Verkman, A.S.}
     16966}
     16967@article{Jo2007,
     16968  number = {{8}},
     16969  year = {2007},
     16970  title = {{A single-molecule barcoding system using nanoslits for DNA analysis}},
     16971  pages = {{2673-2678}},
     16972  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16973  volume = {{104}},
     16974  author = {Jo, Kyubong and Dhingra, Dalia M. and Odijk, Theo and de Pablo, Juan J. and Graham, Michael D. and Runnheim, Rod and Forrest, Dan and Schwartz, David C.}
     16975}
     16976@article{Speidel2003,
     16977  number = {{2}},
     16978  year = {2003},
     16979  title = {{Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging}},
     16980  pages = {{69-71}},
     16981  journal = {{Optics Letters}},
     16982  volume = {{28}},
     16983  author = {Speidel, Michael and Jonas, Alexandr and Florin, Ernst-Ludwig}
     16984}
     16985@article{Pounder2006,
     16986  number = {{3}},
     16987  year = {2006},
     16988  title = {{Comparison of real-time polymerase chain reaction using the Smart Cycler and the Gen-Probe amplified Mycobacterium tuberculosis direct test for detection of M. tuberculosis complex in clinical specimens }},
     16989  pages = {{217-222}},
     16990  journal = {{Diagnostic Microbiology and Infectious Disease}},
     16991  volume = {{54}},
     16992  author = {Pounder, June I. and Aldous, Wade K. and Woods, Gail L.}
     16993}
     16994@article{Harris1966,
     16995  number = {{7}},
     16996  year = {1966},
     16997  title = {{On Polymer Dynamics}},
     16998  pages = {{2595}},
     16999  journal = {{The Journal of Chemical Physics}},
     17000  volume = {{44}},
     17001  author = {Harris, R.A. and Hearst, J.E.}
     17002}
     17003@article{Willert1992,
     17004  year = {1992},
     17005  title = {{Three-dimensional particle imaging with a single camera}},
     17006  pages = {{353-358}},
     17007  journal = {{Experiments in Fluids}},
     17008  volume = {{12}},
     17009  author = {Willert, C. E. and Gharib, M.}
     17010}
     17011@article{Oberholzer1997,
     17012  number = {21},
     17013  year = {1997},
     17014  title = {Grand canonical Brownian dynamics simulation of colloidal adsorption},
     17015  pages = {9157-9167},
     17016  journal = {Journal of Chemical Physics},
     17017  volume = {107},
     17018  author = {Oberholzer, M.R. and Wagner, N.J. and Lenhoff, Abraham M.}
     17019}
     17020@article{Wiggins2006,
     17021  year = {2006},
     17022  title = {Generalized theory of semiflexible polymers},
     17023  pages = {031906},
     17024  journal = {Physical Review E},
     17025  volume = {73},
     17026  author = {Wiggins, P.A. and Nelson, P.C.}
     17027}
     17028@article{Brenner1961,
     17029  number = {{3-4}},
     17030  year = {1961},
     17031  title = {{The slow motion of a sphere through a viscous fluid towards a plane surface}},
     17032  pages = {{242-251}},
     17033  journal = {{Chemical Engineering Science}},
     17034  volume = {{16}},
     17035  author = {Brenner, Howard}
     17036}
     17037@article{Bhattacharjee1987,
     17038  number = {{1}},
     17039  year = {1987},
     17040  title = {{Statistical mechanics of solutions of semiflexible chains: A path integral formulation}},
     17041  pages = {{411-418}},
     17042  journal = {{the Journal of Chemical Physics}},
     17043  volume = {{86}},
     17044  author = {Bhattacharjee, Somendra M. and Muthukumar, M.}
     17045}
     17046@article{Armani2007,
     17047  year = {2007},
     17048  title = {{Label-Free, Single-Molecule Detection with Optical Microcavities}},
     17049  journal = {{Sciencexpress}},
     17050  author = {Armani, Andrea M. and Kulkarni, Rajan P. and Fraser, Scott E. and Flagan, Richard C. and Vahala, Kerry J.}
     17051}
     17052@article{Hegner1999,
     17053  number = {{18}},
     17054  year = {1999},
     17055  title = {{Polymerization and mechanical properties of single RecA-DNA filaments}},
     17056  pages = {{10109-10114}},
     17057  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     17058  volume = {{96}},
     17059  author = {Hegner, Martin and Smith, Steven B. and Bustamante, Carlos}
     17060}
     17061@article{Zhu2001,
     17062  number = {{1}},
     17063  year = {2001},
     17064  title = {{Protein arrays and microarrays}},
     17065  pages = {{40-45}},
     17066  journal = {{Current Opinion in Chemical Biology}},
     17067  volume = {{5}},
     17068  author = {Zhu, Heng and Snyder, Michael}
     17069}
     17070@article{Wiggins2006b,
     17071  year = {2006},
     17072  title = {{High flexibility of DNA on short length scales probed by atomic force microscopy}},
     17073  pages = {{137-141}},
     17074  journal = {{Nature Nanotechnology}},
     17075  volume = {{1}},
     17076  author = {Wiggins, P. A. and van der Heijden, T. and Moreno-Herrero, F. and Spakowitz, A. and Philips, R. and Windom, J. and Dekker, C. and Nelson, P. C.}
     17077}
     17078@article{Zhang2007,
     17079  number = {{10}},
     17080  year = {2007},
     17081  title = {{Gaussian approximations of fluorescence microscope point-spread function models}},
     17082  pages = {{1819-1829}},
     17083  journal = {Applied Optics},
     17084  volume = {{46}},
     17085  author = {Zhang, B. and Zerubia, J. and Olivio-Marin, J.-C.}
     17086}
     17087@article{Scott1979,
     17088  number = {{3}},
     17089  year = {1979},
     17090  title = {{On optimal and data-based histograms}},
     17091  pages = {{605-610}},
     17092  journal = {{Biometrika}},
     17093  volume = {{66}},
     17094  author = {Scott, David W.}
     17095}
     17096@article{Mlodzianoski2009,
     17097  number = {{10}},
     17098  year = {2009},
     17099  title = {Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy},
     17100  pages = {{8264-8277}},
     17101  journal = {{Optics Express}},
     17102  volume = {{17}},
     17103  author = {Mlodzianoski, M.J. and Juette, M.F. and Beane, G.L. and Bewersdorf, J.}
     17104}
     17105@article{Carre2003,
     17106  year = {2003},
     17107  title = {{Molecular interactions between DNA and an aminated glass substrate}},
     17108  pages = {{49-55}},
     17109  journal = {{Journal of Colloid and Interface Science}},
     17110  volume = {{260}},
     17111  author = {Carr\\\'e, Alain and Lacarri\\\`ere, Val\\\'erie and Birch, William}
     17112}
     17113@article{Sage2005,
     17114  number = {9},
     17115  year = {2005},
     17116  title = {Automatic Tracking of Individual Fluorescence Particles: Application to the Study of Chromosome Dynamics},
     17117  pages = {1372-1383},
     17118  journal = {IEEE Transactions on Image Processing},
     17119  volume = {14},
     17120  author = {Sage, D. and Neumann, F.R. and Hediger, F. and Gasser, S.M. and Unser, M.}
     17121}
     17122@article{Dohoney2001,
     17123  year = {2001},
     17124  title = {{Chi-Sequence recognition and DNA translocation by single RecBCD helicase/nuclease molecules}},
     17125  pages = {{370-374}},
     17126  journal = {{Nature}},
     17127  volume = {{409}},
     17128  author = {Dohoney, Kathleen M. and Gelles, Jeff}
     17129}
     17130@article{Saleh2009,
     17131  number = {{6}},
     17132  year = {2009},
     17133  title = {{Nonlinear Low-Force Elasticity of Single-Stranded DNA Molecules}},
     17134  pages = {{068301}},
     17135  journal = {{Physical Review Letters}},
     17136  volume = {{102}},
     17137  author = {Saleh, O.A. and McIntosh, D.B. and Pincus, P. and Ribeck, N.}
     17138}
     17139@article{Moerner2007,
     17140  number = {{31}},
     17141  year = {2007},
     17142  title = {{New directions in single-molecule imaging and analysis}},
     17143  pages = {{12596-12602}},
     17144  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     17145  volume = {{104}},
     17146  author = {Moerner, W.E.}
     17147}
     17148@article{Spakowitz2005,
     17149  year = {2005},
     17150  title = {{End-to-end distance vector distribution with fixed end orientations for the wormlike chain model}},
     17151  journal = {{Physical Review E}},
     17152  volume = {{72}},
     17153  author = {Spakowitz, Andrew J. and Wang, Zhen-Gang}
     17154}
     17155@article{Spakowitz2004,
     17156  year = {2004},
     17157  title = {{Exact Results for a Semiflexible Polymer Chain in an Aligning Field}},
     17158  pages = {{5814-5823}},
     17159  journal = {{Macromolecules}},
     17160  volume = {{37}},
     17161  author = {Spakowitz, Andrew J. and Wang, Zhen-Gang}
     17162}
     17163@article{Spakowitz2006,
     17164  number = {{5}},
     17165  year = {2006},
     17166  title = {{Wormlike chain statistics with twist and fixed ends}},
     17167  pages = {{684-690}},
     17168  journal = {{Europhysics Letters (EPL)}},
     17169  volume = {{73}},
     17170  author = {Spakowitz, A. J.}
     17171}
     17172@article{Wieser2008,
     17173  number = {12},
     17174  year = {2008},
     17175  title = {Versatile Analysis of Single-Molecule Tracking Data by Comprehensive Testing against {Monte Carlo} Simulations},
     17176  pages = {5988-6001},
     17177  journal = {Biophysical Journal},
     17178  volume = {95},
     17179  author = {Wieser, S. and Axmann, M. and {Sch\"utz}, G.J.}
     17180}
     17181@phdthesis{Sarkar2002,
     17182  year = {2002},
     17183  title = {{Theoretical micromechanics of DNA and DNA-protein complexes}},
     17184  school = {{University of Illinois at Chicago}},
     17185  author = {Sarkar, Abhijit}
     17186}
     17187@article{Ha1995,
     17188  number = {{21}},
     17189  year = {1995},
     17190  title = {{A mean-field model for semiflexible chains}},
     17191  pages = {{9408-9412}},
     17192  journal = {{Journal of Chemical Physics}},
     17193  volume = {{103}},
     17194  author = {Ha, B.-Y. and Thirumalai, D.}
     17195}
     17196@misc{Beausang2006,
     17197  month = {October 1, 2006},
     17198  year = {2006},
     17199  title = {{Elementary simulation of tethered Brownian motion}},
     17200  author = {Beausang, John F. and Zurla, Chiara and Sullivan, Luke and Finzi, Laura and Nelson, Philip C.}
     17201}
     17202@article{Beausang2007,
     17203  number = {{6}},
     17204  year = {2007},
     17205  title = {{Elementary simulation of tethered Brownian motion}},
     17206  pages = {{520-523}},
     17207  journal = {{American Journal of Physics}},
     17208  volume = {{75}},
     17209  author = {Beausang, John F. and Zurla, Chiara and Finzi, Laura and Sullivan, Luke and Nelson, Philip C.}
     17210}
     17211@phdthesis{Guasto2008,
     17212  year = {2008},
     17213  title = {{Micro- and Nano-scale Colloidal Dynamics Near Surfaces}},
     17214  school = {{Brown University}},
     17215  author = {Guasto, Jeffrey S.}
     17216}
     17217@misc{Nelson2001,
     17218  year = {2001},
     17219  title = {{Dynamical Theories of Brownian Motion}},
     17220  volume = {Second edition},
     17221  publisher = {{Princeton University Press}},
     17222  author = {Nelson, Edward}
     17223}
     17224@article{Shivashankar1998,
     17225  number = {{3}},
     17226  year = {1998},
     17227  title = {{Backscattering from a tethered bead as a probe of DNA flexibility}},
     17228  pages = {{291-293}},
     17229  journal = {{Applied Physics Letters}},
     17230  volume = {{73}},
     17231  author = {Shivashankar, G.V. and Stolovitzky, G. and Libchaber, A.}
     17232}
     17233@phdthesis{Niu2004,
     17234  year = {2004},
     17235  title = {{A Label-free, Fluorescence Based Assay for Microarray}},
     17236  school = {{Virginia Polytechnic Institute and State University}},
     17237  author = {Niu, Sanjun}
     17238}
     17239@article{Hiraoka1987,
     17240  year = {1987},
     17241  title = {The Use of a Charge-Coupled Device for Quantitative Optical Microscopy of Biological Structures},
     17242  pages = {{36-41}},
     17243  journal = {Science},
     17244  volume = {{238}},
     17245  author = {Hiraoka, Y. and Sedat, J.W. and Agard, D.A.}
     17246}
     17247@article{Yamakawa1976,
     17248  number = {{6}},
     17249  year = {1976},
     17250  title = {{Statistical mechanics of helical wormlike chains. II. Operational method and moments}},
     17251  pages = {{2371-2376}},
     17252  journal = {{The Journal of Chemical Physics}},
     17253  volume = {{65}},
     17254  author = {Yamakawa, Hiromi and Fujii, Motoharu and Shimada, Jiro}
     17255}
     17256@article{Nelson2007,
     17257  year = {2007},
     17258  title = {{Colloidal particle motion as a diagnostic of DNA conformational transitions}},
     17259  journal = {{Current Opinion in Colloid & Interface Science}},
     17260  author = {Nelson, Philip C.}
     17261}
     17262@article{Allemand2003,
     17263  year = {2003},
     17264  title = {{Stretching DNA and RNA to probe their interactions with proteins}},
     17265  pages = {{266-274}},
     17266  journal = {{Current Opinion in Structural Biology}},
     17267  volume = {{13}},
     17268  author = {Allemand, Jean-Francois and Bensimon, David and Croquette, Vincent}
     17269}
     17270@article{Liu2007,
     17271  number = {{12}},
     17272  year = {2007},
     17273  title = {{Quantized plasmon quenching dips nanospectroscopy via plasmon resonance energy transfer}},
     17274  pages = {{1015-1017}},
     17275  journal = {{Nature Methods}},
     17276  volume = {{4}},
     17277  author = {Liu, Gang Logan and Long, Yi-Tao and Choi, Yeonho and Kang, Taewook and Lee, Luke P.}
     17278}
     17279@article{Prieve1990,
     17280  number = {{2}},
     17281  year = {1990},
     17282  title = {{Total Internal Reflection Microscopy: a Tool for Measuring Colloidal Forces}},
     17283  pages = {{396-403}},
     17284  journal = {{Langmuir}},
     17285  volume = {{6}},
     17286  author = {Prieve, Dennis C. and Frej, Nasser A.}
     17287}
     17288@article{Strick1996,
     17289  number = {{5257}},
     17290  year = {1996},
     17291  title = {{The Elasticity of a Single Supercoiled DNA Molecule}},
     17292  pages = {{1835-1837}},
     17293  journal = {{Science}},
     17294  volume = {{271}},
     17295  author = {Strick, T.R. and Allemand, J.-F. and Bensimon, D. and Bensimon, A. and Croquette, V.}
     17296}
     17297@article{Prieve1993,
     17298  number = {{9}},
     17299  year = {1993},
     17300  title = {{Scattering of an evanescent surface wave by a microscopic dielectric sphere}},
     17301  journal = {{Applied Optics}},
     17302  volume = {{32}},
     17303  author = {Prieve, Dennis C. and Walz, John Y.}
     17304}
     17305@article{Montanari2001,
     17306  number = {{10}},
     17307  year = {2001},
     17308  title = {{Hairpin Formation and Elongation of Biomolecules}},
     17309  pages = {{2178-2181}},
     17310  journal = {{Physical Review Letters}},
     17311  volume = {{86}},
     17312  author = {Montanari, Andrea and M\\\'ezard, Marc}
     17313}
     17314@article{Storm2003b,
     17315  number = {{5}},
     17316  year = {2003},
     17317  title = {{Theory of high-force DNA stretching and overstretching}},
     17318  pages = {{051906}},
     17319  journal = {{Physical Review E}},
     17320  volume = {{67}},
     17321  author = {Storm, C. and Nelson, P. C.}
     17322}
     17323@article{Bouchiat1999,
     17324  year = {1999},
     17325  title = {{Estimating the Persistence Length of a Worm-Like Chain Molecule from Force-Extension Measurements}},
     17326  pages = {{409-413}},
     17327  journal = {{Biophysical Journal}},
     17328  volume = {{76}},
     17329  author = {Bouchiat, C. and Wang, M. D. and Allemand, J.-F. and Strick, T. and Block, S. M. and Croquette, V.}
     17330}
     17331@article{Cady2007,
     17332  year = {2007},
     17333  title = {{Optimized linkage and quenching strategies for quantum dot molecular beacons}},
     17334  pages = {{116-124}},
     17335  journal = {{Molecular and Cellular Probes}},
     17336  volume = {{21}},
     17337  author = {Cady, Nathaniel C. and Strickland, Aaron D. and Batt, Carl A.}
     17338}
     17339@article{Fraden1993,
     17340  number = {{4}},
     17341  year = {1993},
     17342  title = {{Angular correlations and the isotropic-nematic phase transition in suspensions of tobacco mosaic virus}},
     17343  pages = {{2816-2838}},
     17344  journal = {{Physical Review E}},
     17345  volume = {{48}},
     17346  author = {Fraden, Seth and Maret, Georg}
     17347}
     17348@article{Bustamante1994,
     17349  number = {{5178}},
     17350  year = {1994},
     17351  title = {{Entropic Elasticity of lambda-Phage DNA}},
     17352  pages = {{1599-1601}},
     17353  journal = {{Science}},
     17354  volume = {{265}},
     17355  author = {Bustamante, C. and Marko, J.F. and Siggia, E.D. and Smith, S.}
     17356}
     17357@article{Rouse1953,
     17358  number = {{7}},
     17359  year = {1953},
     17360  title = {{A Theory of the Linear Viscoelastic Properties of Dilute Solutions of Coiling Polymers}},
     17361  pages = {{1272-1280}},
     17362  journal = {{The Journal of Chemical Physics}},
     17363  volume = {{21}},
     17364  author = {Rouse, Prince E.}
     17365}
     17366@article{Vanzi2003,
     17367  number = {{10}},
     17368  year = {2003},
     17369  title = {{Protein synthesis by single ribosomes}},
     17370  pages = {{1174-1179}},
     17371  journal = {{RNA}},
     17372  volume = {{9}},
     17373  author = {Vanzi, Francesco and Vladimirov, Serguei and Knudsen, Charlotte R. and Goldman, Yale E. and Cooperman, Barry S.}
     17374}
     17375@article{Lambert2006,
     17376  year = {2006},
     17377  title = {{Mg2+-Induced Compaction of Single RNA Molecules Monitored by Tethered Particle Microscopy}},
     17378  pages = {{3672-3685}},
     17379  journal = {{Biophysical Journal}},
     17380  volume = {{90}},
     17381  author = {Lambert, Meredith Newby and {V\"ocker}, Eva and Blumberg, Seth and Redemann, Stefanie and Gajraj, Arivalagan and Meiners, Jens-Christian and Walter, Nils. G.}
     17382}
     17383@article{Kessler2004,
     17384  number = {{2}},
     17385  year = {2004},
     17386  title = {{Distribution functions for filaments under tension}},
     17387  pages = {{1155-1164}},
     17388  journal = {{Journal of Chemical Physics}},
     17389  volume = {{121}},
     17390  author = {Kessler, David A. and Rabin, Yitzhak}
     17391}
     17392@article{Edwards1970,
     17393  year = {1970},
     17394  title = {{Theory of the Single Chain}},
     17395  pages = {{43}},
     17396  journal = {{Discussions of the Faraday Society}},
     17397  volume = {{49}},
     17398  author = {Edwards, S.F.}
     17399}
     17400@article{Bouzigues2008,
     17401  number = {{11}},
     17402  year = {2008},
     17403  title = {{Nanofluidics in the Debye Layer at Hydrophilic and Hydrophobic Surfaces}},
     17404  pages = {{114503}},
     17405  journal = {{Physical Review Letters}},
     17406  volume = {{101}},
     17407  author = {Bouzigues, C. I. and Tabeling, P. and Bocquet, L.}
     17408}
     17409@misc{Odijk2008,
     17410  month = {05 September 2008},
     17411  year = {2008},
     17412  title = {{Private communication}},
     17413  author = {Odijk, Theo}
     17414}
     17415@article{Kirkpatrick2008,
     17416  number = {{1}},
     17417  year = {2008},
     17418  title = {{Performance of a gradient-based shift estimator in a spatially sparse data environment: tracking the sub-pixel motion of fluorescent particles}},
     17419  pages = {{64-72}},
     17420  journal = {{Journal of Microscopy}},
     17421  volume = {{212}},
     17422  author = {Kirkpatrick, S.J. and Duncan, D.D.}
     17423}
     17424@article{Visnapuu2009,
     17425  number = {{10}},
     17426  year = {2009},
     17427  title = {{Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition}},
     17428  pages = {{1056-1062}},
     17429  journal = {{Nature Structural & Molecular Biology}},
     17430  volume = {{16}},
     17431  author = {Visnapuu, Mari-Liis and Greene, Eric C.}
     17432}
     17433@book{Conover1980,
     17434  series = {{Wiley series in probability and mathematical statistics}},
     17435  edition = {{Second edition}},
     17436  year = {1980},
     17437  title = {{Practical Nonparametric Statistics}},
     17438  address = {{New York}},
     17439  publisher = {{Wiley}},
     17440  author = {Conover, W.J.}
     17441}
     17442@article{Snyder1992,
     17443  number = {{5}},
     17444  year = {1992},
     17445  title = {{Deblurring Subject to Nonnegativity Constraints}},
     17446  pages = {{1143-1150}},
     17447  journal = {{IEEE Transactions on Signal Processing}},
     17448  volume = {{40}},
     17449  author = {Snyder, Donald L. and Schulz, Timothy H. and O'Sullivan, Joseph A.}
     17450}
     17451@article{DiMarzio1965b,
     17452  number = {{2}},
     17453  year = {1965},
     17454  title = {{One-Dimensional Model of Polymer Adsorption}},
     17455  journal = {{The Journal of Chemical Physics}},
     17456  volume = {{43}},
     17457  author = {DiMarzio, Edmund A. and McCrackin, Frank L.}
     17458}
     17459@article{DiMarzio1965a,
     17460  number = {{6}},
     17461  year = {1965},
     17462  title = {{Proper Accounting of Conformations of a Polymer Near a Surface}},
     17463  pages = {{2101-2106}},
     17464  journal = {{The Journal of Chemical Physics}},
     17465  volume = {{42}},
     17466  author = {DiMarzio, Edmund A.}
     17467}
     17468@article{Netopilik1990,
     17469  year = {1990},
     17470  title = {{Orientation-dependent rotational diffusion coefficient of rod-like macromolecules in semi-dilute solution}},
     17471  pages = {{172-173}},
     17472  journal = {{Rheologica Acta}},
     17473  volume = {{29}},
     17474  author = {Netopil\\\'{\\\i}k, M.}
     17475}
     17476@article{Hamaker1937,
     17477  number = {{10}},
     17478  year = {1937},
     17479  title = {{The London-Van Der Waals Attraction Between Spherical Particles}},
     17480  pages = {{1058-1072}},
     17481  journal = {{Physica }},
     17482  volume = {{4}},
     17483  author = {Hamaker, H.C.}
     17484}
     17485@article{Cheezum2001,
     17486  number = {{4}},
     17487  year = {2001},
     17488  title = {{Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles}},
     17489  pages = {{2378-2388}},
     17490  journal = {{Biophysical Journal}},
     17491  volume = {{81}},
     17492  author = {Cheezum, Michael K. and Walker, William F. and Guilford, William H.}
     17493}
     17494@article{Ritchie2005,
     17495  number = {{3}},
     17496  year = {2005},
     17497  title = {{Detection of Non-Brownian Diffusion in the Cell Membrane in Single Molecule Tracking}},
     17498  pages = {{2266-2277}},
     17499  journal = {{Biophysical Journal}},
     17500  volume = {{88}},
     17501  author = {Ritchie, Ken and Sha, Xiao-Yuan and Kondo, Junko and Iwasawa, Kokoro and Fujiwara, Takahiro and Kusumi, Akihiro}
     17502}
     17503@incollection{Han2009,
     17504  series = {{The IMA Volumes in Mathematics and its Applications}},
     17505  year = {2009},
     17506  title = {{Calibration of Tethered Particle Motion Experiments}},
     17507  booktitle = {{Mathematics of DNA Structure, Funcion and Interactions}},
     17508  editor = {Benham, C.J. and Harvey, S. and Olson, W.K. and Sumners, D.W. and Swigon, D.},
     17509  volume = {150},
     17510  publisher = {{Springer}},
     17511  author = {Han, Lin and Lui, Bertrand and Blumberg, Seth and Beausang, John F. and Nelson, Philip C. and Philips, Rob}
     17512}
     17513@article{Towles2009,
     17514  year = {2009},
     17515  title = {{First-principles calculation of DNA looping in tethered particle experiments}},
     17516  pages = {{025001}},
     17517  journal = {{Physical Biology}},
     17518  volume = {{6}},
     17519  author = {Towles, Kevin B. and Beausang, John F. and Garcia, H.G. and Philips, Rob and Nelson, Philip C.}
     17520}
     17521@article{Pralle1999,
     17522  number = {{5}},
     17523  year = {1999},
     17524  title = {{Three-Dimensional High-resolution Particle Tracking for Optical Tweezers by Forward Scattered Light}},
     17525  pages = {{378-386}},
     17526  journal = {{Microscopy Research and Technique}},
     17527  volume = {{44}},
     17528  author = {Pralle, A. and Prummer, M. and Florin, E.-L and Stelzer, E.H.K. and H\\\"orber, J.K.H.}
     17529}
     17530@article{Wrobel2003,
     17531  number = {{12}},
     17532  year = {2003},
     17533  title = {{Optimization of high-density cDNA-microarray protocols by 'design of experiments'}},
     17534  journal = {{Nucleic Acids Research}},
     17535  volume = {{131}},
     17536  author = {Wrobel, Gunnar and Schlingemann, Joerg and Hummerich, Lars and Kramer, Heidi and Lichter, Peter and Hahn, Meinhard}
     17537}
     17538@article{Gibson1989,
     17539  number = {{9}},
     17540  year = {1989},
     17541  title = {{Diffraction by a Circular Aperture as a Model for Three-Dimensional Microscopy}},
     17542  pages = {{1357-1367}},
     17543  journal = {{Journal of the Optical Society of America A}},
     17544  volume = {{6}},
     17545  author = {Gibson, Sarah Frisken and Lanni, Frederick}
     17546}
     17547@article{Destainville2006,
     17548  number = {{2}},
     17549  year = {2006},
     17550  title = {{Quantification and Correction of Systematic Erros Due to Detector Time-Averaging in Single-Molecule Tracking Experiments}},
     17551  pages = {{L17-L19}},
     17552  journal = {{Biophysical Journal}},
     17553  volume = {{90}},
     17554  author = {Destainville, Nicolas and Salom\\\'e, Laurence}
     17555}
     17556@article{Sader1997,
     17557  number = {{2}},
     17558  year = {1997},
     17559  title = {{Accurate Analytic Formulae for the Far Field Effective Potential and Surface Charge Density of a Uniformly Charged Sphere}},
     17560  pages = {{508-510}},
     17561  journal = {{Journal of Colloid and Interface Science}},
     17562  volume = {{188}},
     17563  author = {Sader, John Elie}
     17564}
     17565@article{Durnin1987,
     17566  number = {{15}},
     17567  year = {1987},
     17568  title = {{Diffraction-Free Beams}},
     17569  pages = {{1499-1501}},
     17570  journal = {{Physical Review Letters}},
     17571  volume = {{58}},
     17572  author = {Durnin, J. and Miceli, J.J., Jr. and Eberly, J.H.}
     17573}
     17574@article{Moroz1998,
     17575  year = {1998},
     17576  title = {{Entropic Elasticity of Twist-Storing Polymers}},
     17577  pages = {{6333-6347}},
     17578  journal = {{Macromolecules}},
     17579  volume = {{31}},
     17580  author = {Moroz, J. David and Nelson, Philip}
     17581}
     17582@article{Peters1998,
     17583  number = {{7}},
     17584  year = {1998},
     17585  title = {{Three dimensional single-particle tracking with nanometer resolution}},
     17586  pages = {{2762-2766}},
     17587  journal = {{Review of Scientific Instruments}},
     17588  volume = {{69}},
     17589  author = {Peters, Inge M. and de Grooth, Bart G. and Schins, Juleon M. and Figdor, Carl G. and Greve, Jan}
     17590}
     17591@article{Kessler1991,
     17592  year = {1991},
     17593  title = {{The digoxigenin:anti-digoxigening (DIG) technology - a survey on the concept and realization of a novel bioanalytical indicator system}},
     17594  pages = {{161-205}},
     17595  journal = {{Molecular and Cellular Probes}},
     17596  volume = {{5}},
     17597  author = {Kessler, Christoph}
     17598}
     17599@article{Hyeon2006a,
     17600  number = {{10}},
     17601  year = {2006},
     17602  title = {{Kinetics of interior loop formation in semiflexible chains}},
     17603  pages = {{104905}},
     17604  journal = {{The Journal of Chemical Physics}},
     17605  volume = {{124}},
     17606  author = {Hyeon, Changbong and Thirumalai, D.}
     17607}
     17608@article{Moroz1997,
     17609  number = {{26}},
     17610  year = {1997},
     17611  title = {{Torsional directed walks, entropic elasticity, and DNA twist stiffness}},
     17612  pages = {{14418-14422}},
     17613  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     17614  volume = {{94}},
     17615  author = {Moroz, J. David and Nelson, Philip}
     17616}
     17617@article{Massart2005,
     17618  number = {{4}},
     17619  year = {2005},
     17620  title = {{Visual Presentation of Data by Means of Box Plots}},
     17621  pages = {{215-218}},
     17622  journal = {{LC-GC Europe}},
     17623  volume = {{18}},
     17624  author = {Massart, D.L. and Smeyers-Verbeke, J. and Capron, X. and Schlesier, Karin}
     17625}
     17626@article{Hynes2001,
     17627  number = {3},
     17628  year = {2001},
     17629  title = {The ErbB receptor tyrosine family as signal integrators},
     17630  pages = {151-9},
     17631  journal = {Endocr Relat Cancer},
     17632  volume = {8},
     17633  author = {Hynes, N. E. and Horsch, K. and Olayioye, M. A. and Badache, A.}
     17634}
     17635@article{Michalet2001,
     17636  number = {4},
     17637  year = {2001},
     17638  title = {Properties of fluorescent semiconductor nanocrystals and their application to biological labeling},
     17639  pages = {261-276},
     17640  journal = {Single Molecules},
     17641  volume = {2},
     17642  author = {Michalet, X. and Pinaud, F. and Lacoste, T. D. and Dahan, M. and Bruchez, M. P. and Alivisatos, A. P. and Weiss, S.}
     17643}
     17644@article{Kuno2001,
     17645  number = {2},
     17646  year = {2001},
     17647  title = {"On"/"off" fluorescence intermittency of single semiconductor quantum dots},
     17648  pages = {1028-1040},
     17649  journal = {Journal of Chemical Physics},
     17650  volume = {115},
     17651  author = {Kuno, M. and Fromm, D. P. and Hamann, H. F. and Gallagher, A. and Nesbitt, D. J.}
     17652}
     17653@article{Martinez2003,
     17654  number = {4},
     17655  year = {2003},
     17656  title = {Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays},
     17657  pages = {e18},
     17658  journal = {Nucleic Acids Research},
     17659  volume = {31},
     17660  author = {Martinez, M. J. and Aragon, A. D. and Rodriguez, A. L. and Weber, J. M. and Timlin, J. A. and Sinclair, M. B. and Haaland, D. M. and Werner-Washburne, M.}
     17661}
     17662@article{Stauffer1997,
     17663  number = {6},
     17664  year = {1997},
     17665  title = {Compartmentalized IgE receptor-mediated signal transduction in living cells},
     17666  pages = {1447-54},
     17667  journal = {J Cell Biol},
     17668  volume = {139},
     17669  author = {Stauffer, T. P. and Meyer, T.}
     17670}
     17671@article{Hebert2005,
     17672  number = {5},
     17673  year = {2005},
     17674  title = {Spatiotemporal image correlation Spectroscopy (STICS) theory, verification, and application to protein velocity mapping in living CHO cells},
     17675  pages = {3601-3614},
     17676  journal = {Biophysical Journal},
     17677  volume = {88},
     17678  author = {Hebert, B. and Costantino, S. and Wiseman, P. W.}
     17679}
     17680@article{Pyenta2003,
     17681  year = {2003},
     17682  title = {Lateral diffusion of membrane lipid-anchored probes before and after aggregation of cell surface IgE-receptors},
     17683  pages = {8310-8318},
     17684  journal = {J. Phys. Chem. A},
     17685  volume = {107},
     17686  author = {Pyenta, P. and Schwille, P. and Webb, W. and Holowka, D. and Baird, B.}
     17687}
     17688@misc{CUDA,
     17689  year = {2007},
     17690  title = {Compute Unified Device Architecture (CUDA)},
     17691  note = {{http://www.nvidia.com}},
     17692  author = {NVIDIA}
     17693}
     17694@article{Petersen1993,
     17695  year = {1993},
     17696  title = {Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application},
     17697  pages = {1135-1146},
     17698  journal = {Biophys. J.},
     17699  volume = {65},
     17700  author = {Petersen, N. and Hoddelius, P.L. and Wiseman, P. and Seger, O. and Magnusson, K.}
     17701}
     17702@article{Hess2006,
     17703  number = {11},
     17704  year = {2006},
     17705  title = {Ultra-high resolution imaging by fluorescence photoactivation localization microscopy},
     17706  pages = {4258-4272},
     17707  journal = {Biophysical Journal},
     17708  volume = {91},
     17709  author = {Hess, S. T. and Girirajan, T. P. K. and Mason, M. D.}
     17710}
     17711@article{Kotula2004,
     17712  year = {2004},
     17713  title = {Automated analysis of SEM X-Ray spectral images: a powerful new microanalysis tool},
     17714  pages = {1-17},
     17715  journal = {Microscopy and Microanalysis },
     17716  volume = {9},
     17717  author = {Kotula, P. G. and Keenan, M. R. and Michael, J. R. }
     17718}
     17719@article{Yarden2001,
     17720  number = {2},
     17721  year = {2001},
     17722  title = {Untangling the ErbB signalling network},
     17723  pages = {127-37},
     17724  journal = {Nat Rev Mol Cell Biol},
     17725  volume = {2},
     17726  author = {Yarden, Y. and Sliwkowski, M. X.}
     17727}
     17728@article{MinGW,
     17729  year = {2008},
     17730  title = {Minimalist GNU for Windows},
     17731  url = {http://www.mingw.org/},
     17732  author = {MinGW}
     17733}
     17734@article{Shroff2008,
     17735  number = {5},
     17736  year = {2008},
     17737  title = {Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics},
     17738  pages = {417-423},
     17739  journal = {Nature Methods},
     17740  volume = {5},
     17741  author = {Shroff, H. and Galbraith, C. G. and Galbraith, J. A. and Betzig, E.}
     17742}
     17743@book{Jain1988,
     17744  year = {1988},
     17745  title = {Algorithms for Clustering Data},
     17746  publisher = {Prentice Hall},
     17747  author = {Jain, A. and Dubes, R.}
     17748}
     17749@article{Grecco2004,
     17750  number = {4-5},
     17751  year = {2004},
     17752  title = {Ensemble and single particle photophysical proper-ties (Two-Photon excitation, anisotropy, FRET, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells},
     17753  pages = {169-179},
     17754  journal = {Microscopy Research and Technique},
     17755  volume = {65},
     17756  author = {Grecco, H. E. and Lidke, K. A. and Heintzmann, R. and Lidke, D. S. and Spagnuolo, C. and Martinez, O. E. and Jares-Erijman, E. A. and Jovin, T. M.}
     17757}
     17758@article{VanBenthem2002,
     17759  year = {2002},
     17760  title = {Application of equality constraints on variables during alternating least squares procedures},
     17761  pages = {613-622},
     17762  journal = {Journal of Chemometrics},
     17763  volume = {16},
     17764  author = {Van Benthem, M. H. and Keenan, M. R. and Haaland, D. M. }
     17765}
     17766@article{Manley2008,
     17767  number = {2},
     17768  year = {2008},
     17769  title = {High-density mapping of single-molecule trajectories with photoactivated localization microscopy},
     17770  pages = {155-157},
     17771  journal = {Nature Methods},
     17772  volume = {5},
     17773  author = {Manley, S. and Gillette, J. M. and Patterson, G. H. and Shroff, H. and Hess, H. F. and Betzig, E. and Lippincott-Schwartz, J.}
     17774}
     17775@article{Wilson2000,
     17776  number = {5},
     17777  year = {2000},
     17778  title = {Observing FcepsilonRI signaling from the inside of the mast cell membrane},
     17779  pages = {1131-1142},
     17780  journal = {Journal of Cell Biology},
     17781  volume = {149},
     17782  author = {Wilson, B. S. and Pfeiffer, J. R. and Oliver, J. M.}
     17783}
     17784@article{Wilson2004,
     17785  number = {6},
     17786  year = {2004},
     17787  title = {Markers for detergent-resistant lipid rafts occupy distinct and dynamic domains in native membranes},
     17788  pages = {2580-2592},
     17789  journal = {Molecular Biology of the Cell},
     17790  volume = {15},
     17791  author = {Wilson, B. S. and Steinberg, S. L. and Liederman, K. and Pfeiffer, J. R. and Surviladze, Z. and Zhang, J. and Samelson, L. E. and Yang, L. H. and Kotula, P. G. and Oliver, J. M.}
     17792}
     17793@article{Timlin2005,
     17794  number = {1},
     17795  year = {2005},
     17796  title = {Hyperspectral microarray scanning: impact on the accuracy and reliability of gene expression data},
     17797  pages = {72},
     17798  journal = {BMC Genomics},
     17799  volume = {6},
     17800  author = {Timlin, J. A. and Haaland, D. M. and Sinclair, M. B. and Aragon, A. D. and Martinez, M. J. and Werner-Washburne, M.}
     17801}
     17802@article{Forney1973,
     17803  number = {3},
     17804  year = {1973},
     17805  title = {Viterbi Algorithm},
     17806  pages = {268-278},
     17807  journal = {Proceedings of the Ieee},
     17808  volume = {61},
     17809  author = {Forney, G. D.}
     17810}
     17811@article{Szent-Gyorgyi2008,
     17812  number = {4},
     17813  year = {2008},
     17814  title = {Fluorogen-activating single-chain antibodies for imaging cell surface proteins (vol 26, pg 235, 2008)},
     17815  pages = {470-470},
     17816  journal = {Nature Biotechnology},
     17817  volume = {26},
     17818  author = {Szent-Gyorgyi, C. and Schmidt, B. F. and Creeger, Y. and Fisher, G. W. and Zakel, K. L. and Adler, S. and Fitzpatrick, J. A. J. and Woolford, C. A. and Yan, Q. and Vasilev, K. V. and Berget, P. B. and Bruchez, M. P. and Jarvik, J. W. and Waggoner, A.}
     17819}
     17820@article{Andrews2008,
     17821  number = {8},
     17822  year = {2008},
     17823  title = {Actin restricts {Fc}$\epsilon${RI} diffusion and facilitates antigen-induced receptor immobilization},
     17824  pages = {955-963},
     17825  journal = {Nature Cell Biology},
     17826  volume = {10},
     17827  author = {Andrews, N. L. and Lidke, K. A. and Pfeiffer, J. R. and Burns, A. R. and Wilson, B. S. and Oliver, J. M. and Lidke, D. S.}
     17828}
     17829@inproceedings{Lidke2007ieee,
     17830  year = {2007},
     17831  title = {Localization fluorescence microscopy using quantum dot blinking},
     17832  booktitle = {4th IEEE International Symposium on Biomedical Imaging},
     17833  pages = {936-939},
     17834  address = {Metro Washington DC, USA. },
     17835  author = {Lidke, K. A. and Heintzmann, R.}
     17836}
     17837@article{Jinschek2010,
     17838  year = {2010},
     17839  title = {Quantitative atomic 3-D imaging of single/double sheet graphene structure},
     17840  journal = {Carbon},
     17841  author = {Jinschek, J.R. and Yucelen, E. and Calderon, H.A. and Freitag, B.}
     17842}
     17843@article{Bates2007,
     17844  number = {5845},
     17845  year = {2007},
     17846  title = {Multicolor super-resolution imaging with photo-switchable fluorescent probes},
     17847  pages = {1749-53},
     17848  journal = {Science},
     17849  volume = {317},
     17850  author = {Bates, M. and Huang, B. and Dempsey, G. T. and Zhuang, X.}
     17851}
     17852@book{Bos2007,
     17853  year = {2007},
     17854  title = {Parameter Estimation for Scientists and Engineers},
     17855  address = {New Jersey},
     17856  publisher = {Wiley \& Sons},
     17857  author = {A. van den Bos}
     17858}
     17859@article{Wolter2009,
     17860  number = {1},
     17861  year = {2010},
     17862  title = {Real-time computation of subdiffraction-resolution fluorescence images},
     17863  pages = {12-22},
     17864  journal = {Journal of Microscopy},
     17865  volume = {237},
     17866  author = {Wolter, S. and Schuttpelz, M. and Tescherepanow, M. and Linde, van de S. and Heilemann, M. and Sauer, M.}
     17867}
     17868@article{Bock2007,
     17869  number = {2},
     17870  year = {2007},
     17871  title = {Two-color far-field fluorescence nanoscopy based on photoswitchable emitters},
     17872  pages = {161-165},
     17873  journal = {Applied Physics B-Lasers and Optics},
     17874  volume = {88},
     17875  author = {Bock, H. and Geisler, C. and Wurm, C. A. and Von Middendorff, C. and Jakobs, S. and Schonle, A. and Egner, A. and Hell, S. W. and Eggeling, C.}
     17876}
     17877@article{Rust2006,
     17878  number = {10},
     17879  year = {2006},
     17880  title = {Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy {(STORM)}},
     17881  pages = {793-795},
     17882  journal = {Nature Methods},
     17883  volume = {3},
     17884  author = {Rust, M.J. and Bates, M. and Zhuang, X.W.}
     17885}
     17886@article{Enderlein2006,
     17887  number = {18},
     17888  year = {2006},
     17889  title = {Polariztion effect on position accuracy of fluorophore localization},
     17890  pages = {8112-8120},
     17891  journal = {Optics Express},
     17892  volume = {14},
     17893  author = {Enderlein, J. and Toprak, E. and Selvin, P.R.}
     17894}
     17895@article{Enderlein2000,
     17896  number = {9},
     17897  year = {2000},
     17898  title = {Theoretical Study of detection of a dipole emitter through an objective with high numerical aperture},
     17899  pages = {634-636},
     17900  journal = {Optics Letters},
     17901  volume = {25},
     17902  author = {Enderlein, J.}
     17903}
     17904@article{Dahan2003,
     17905  number = {5644},
     17906  year = {2003},
     17907  title = {Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking},
     17908  pages = {442-445},
     17909  journal = {Science},
     17910  volume = {302},
     17911  author = {Dahan, M. and Levi, S. and Luccardini, C. and Rostaing, P. and Riveau, B. and Triller, A.}
     17912}
     17913@misc{OberEstimationtool,
     17914  year = {2009},
     17915  title = {Estimation tool},
     17916  note = {University of Texas, Southwestern {http://www4.utsouthwestern.edu/wardlab}},
     17917  author = {Ober, R.J. and Ward, E.S.}
     17918}
     17919@article{Jin2007,
     17920  number = {3},
     17921  year = {2007},
     17922  title = {Single-particle tracking of membrane protein diffusion in a potential: Simulation, detection, and application to confined diffusion of CFTR Cl- channels},
     17923  pages = {1079-1088},
     17924  journal = {Biophysical Journal},
     17925  volume = {93},
     17926  author = {Jin, S. and Haggie, P. M. and Verkman, A. S.}
     17927}
     17928@article{Jin2007b,
     17929  number = {14},
     17930  year = {2007},
     17931  title = {Single particle tracking of complex diffusion in membranes: Simulation and detection of barrier, raft, and interaction phenomena},
     17932  pages = {3625-3632},
     17933  journal = {Journal of Physical Chemistry B},
     17934  volume = {111},
     17935  author = {Jin, S. and Verkman, A. S.}
     17936}
     17937@article{Rasnik2006,
     17938  number = {11},
     17939  year = {2006},
     17940  title = {Nonblinking and longlasting single-molecule fluorescence imaging},
     17941  pages = {891-893},
     17942  journal = {Nature Methods},
     17943  volume = {3},
     17944  author = {Rasnik, I. and McKinney, S. A. and Ha, T.}
     17945}
     17946@article{Hell1992,
     17947  number = {5-6},
     17948  year = {1992},
     17949  title = {Fundamental Improvement of Resolution with a 4Pi-Confocal Fluorescence Microscope Using 2-Photon Excitation},
     17950  pages = {277-282},
     17951  journal = {Optics Communications},
     17952  volume = {93},
     17953  author = {Hell, S. and Stelzer, E. H. K.}
     17954}
     17955@article{LidkeDS2007,
     17956  year = {2007},
     17957  title = {Exploring membrane protein dynamics by multicolor single quantum dot imaging using wide field, TIRF, and hyperspectral microscopy},
     17958  pages = {6448Y1-8},
     17959  journal = {Proc. of SPIE},
     17960  volume = {6448},
     17961  author = {Lidke, D. S. and Andrews, N. L. and Pfeiffer, J. R. and Jones, H. D. T. and Sinclair, M. B. and Haaland, D. M and Burns, A. R. and Wilson, B. S. and M., Oliver. J. and Lidke, K. A.}
     17962}
     17963@article{Warren1997,
     17964  number = {4},
     17965  year = {1997},
     17966  title = {Compact prism spectrographs based on aplanatic principles},
     17967  pages = {1174-1182},
     17968  journal = {Optical Engineering},
     17969  volume = {36},
     17970  author = {Warren, D. W. and Hackwell, J. A. and Gutierrez, D. J.}
     17971}
     17972@article{Schlessinger2002,
     17973  number = {6},
     17974  year = {2002},
     17975  title = {Ligand-induced, receptor-mediated dimerization and activation of EGF receptor},
     17976  pages = {669-72},
     17977  journal = {Cell},
     17978  volume = {110},
     17979  author = {Schlessinger, J.}
     17980}
     17981@article{Arndt-Jovin2006,
     17982  year = {2006},
     17983  title = {In vivo cell imaging with semiconductor quantum dots and noble-metal nanodots},
     17984  journal = {Proc. of SPIE},
     17985  volume = {6096, 60960P},
     17986  author = {Arndt-Jovin, D. J. and Lopez-Quintela, M. A and Lidke, D. S. and Rodr\'{i}guez, M. J. and Santos, F. M. and Lidke, K. A. and Hagen, G. M. and Jovin, T. M.}
     17987}
     17988@article{Ehrensperger2007,
     17989  number = {10},
     17990  year = {2007},
     17991  title = {Multiple association states between glycine receptors and gephyrin identified by SPT analysis},
     17992  pages = {3706-3718},
     17993  journal = {Biophysical Journal},
     17994  volume = {92},
     17995  author = {Ehrensperger, M. V. and Hanus, C. and Vannier, C. and Triller, A. and Dahan, M.}
     17996}
     17997@article{Gilfillan2006,
     17998  number = {3},
     17999  year = {2006},
     18000  title = {Integrated signalling pathways for mast-cell activation},
     18001  pages = {218-30},
     18002  journal = {Nat Rev Immunol},
     18003  volume = {6},
     18004  author = {Gilfillan, A. M. and Tkaczyk, C.}
     18005}
     18006@article{Eggeling2009,
     18007  year = {2009},
     18008  title = {Direct observation of the nanoscale dynamics of membrane lipids in a living cell},
     18009  pages = {1159-1163},
     18010  journal = {Nature},
     18011  volume = {457},
     18012  author = {Eggeling, C. and Ringemann, C. and Medda, R. and
     18013Schwarzmann, G. and Sandhoff, K. and Polyakova, S. and Belov, V.N. and Hein, B. and Middendorff, C. von and {Sch\"onle}, A. and  Hell, S. W.}
     18014}
     18015@article{Huang2008a,
     18016  number = {12},
     18017  year = {2008},
     18018  title = {Whole-cell {3D STORM} reveals interactions between cellular structures with nanometer-scale resolution},
     18019  pages = {1047-1053},
     18020  journal = {Nature Methods},
     18021  volume = {5},
     18022  author = {Huang, B. and Jones, S.A. and Brandenburg, B. and Zhuang, X.}
     18023}
     18024@article{Hess2007,
     18025  number = {44},
     18026  year = {2007},
     18027  title = {Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories},
     18028  pages = {17370-17375},
     18029  journal = {Proceedings of the National Academy of Sciences},
     18030  volume = {104},
     18031  author = {Hess, S.T. and Gould, T.J. and Gudhetl, M.V. and Maas, S.A. and Mills, K.D. and Zimmerberg, J.}
     18032}
     18033@article{Gustafsson2005,
     18034  number = {37},
     18035  year = {2005},
     18036  title = {Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution},
     18037  pages = {13081-13086},
     18038  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     18039  volume = {102},
     18040  author = {Gustafsson, M. G. L.}
     18041}
     18042@article{Egner2007,
     18043  number = {9},
     18044  year = {2007},
     18045  title = {Fluorescence nanoscopy in whole cells by asynchronous localization of photoswitching emitters},
     18046  pages = {3285-3290},
     18047  journal = {Biophysical Journal},
     18048  volume = {93},
     18049  author = {Egner, A. and Geisler, C. and Von Middendorff, C. and Bock, H. and Wenzel, D. and Medda, R. and Andresen, M. and Stiel, A. C. and Jakobs, S. and Eggeling, C. and {Sch\"onle}, A. and Hell, S. W.}
     18050}
     18051@article{Bates2005,
     18052  number = {10},
     18053  year = {2005},
     18054  title = {Short-range spectroscopic ruler based on a single-molecule optical switch},
     18055  pages = {-},
     18056  journal = {Physical Review Letters},
     18057  volume = {94},
     18058  author = {Bates, M. and Blosser, T. R. and Zhuang, X. W.}
     18059}
     18060@article{Sinclair2006,
     18061  number = {24},
     18062  year = {2006},
     18063  title = {Hyperspectral confocal microscope},
     18064  pages = {6283-91},
     18065  journal = {Appl Opt},
     18066  volume = {45},
     18067  author = {Sinclair, M. B. and Haaland, D. M. and Timlin, J. A. and Jones, H. D.}
     18068}
     18069@article{Sinclair2004,
     18070  number = {10},
     18071  year = {2004},
     18072  title = {Design, construction, characterization, and application of a hyperspectral microarray scanner},
     18073  pages = {2079-2088},
     18074  journal = {Applied Optics},
     18075  volume = {43},
     18076  author = {Sinclair, M. B. and Timlin, J. A. and Haaland, D. M. and Werner-Washburne, M.}
     18077}
     18078@article{Sark2002,
     18079  number = {10},
     18080  year = {2002},
     18081  title = {Blueing, bleaching, and blinking of single CdSe/ZnS quantum dots},
     18082  pages = {871-879},
     18083  journal = {Chemphyschem},
     18084  volume = {3},
     18085  author = {Sark, W. G. J. H. M. van and Frederix, P. L. T. M. and Bol, A. A. and Gerritsen, H. C. and Meijerink, A.}
     18086}
     18087@book{Haaland2003,
     18088  series = {In Spectral Imaging: Instrumentation, Applications, and Analysis},
     18089  year = {2003},
     18090  title = {Multivariate curve resolution for hyperspectral image analysis: applications to microarray technology},
     18091  volume = {4959},
     18092  address = {San Jose, CA.},
     18093  publisher = {International Society for Optical Engineering},
     18094  author = {Haaland, D. M. and Timlin, J. A. and Sinclair, M. B. and Van Benthem, M. H. and Martinez, M. J. and Aragon, A. D. and Werner-Washburne, M.}
     18095}
     18096@article{Geisler2007,
     18097  number = {2},
     18098  year = {2007},
     18099  title = {Resolution of lambda/10 in fluorescence microscopy using fast single molecule photo-switching},
     18100  pages = {223-226},
     18101  journal = {Applied Physics a-Materials Science and Processing},
     18102  volume = {88},
     18103  author = {Geisler, C. and Schonle, A. and von Middendorff, C. and Bock, H. and Eggeling, C. and Egner, A. and Hell, S. W.}
     18104}
     18105@article{Metzger1992,
     18106  year = {1992},
     18107  title = {Transmembrane signalling: the joy of aggregation},
     18108  pages = {1477-1487},
     18109  journal = {Journal of Immunology },
     18110  volume = {149},
     18111  author = {Metzger, H.}
     18112}
     18113@article{Hanser2004,
     18114  year = {2004},
     18115  title = {Phase-retrieved pupil functions in wide-field fluorescence microscopy},
     18116  pages = {32-48},
     18117  journal = {Journal of Microscopy-Oxford},
     18118  volume = {216},
     18119  author = {Hanser, B. M. and Gustafsson, M. G. L. and Agard, D. A. and Sedat, J. W.}
     18120}
     18121@book{Bharucha-Reid1960,
     18122  year = {1960},
     18123  title = {Elements of the Theory of Markov Processes and Their Applications},
     18124  publisher = {New York: McGraw-Hill},
     18125  author = {Bharucha-Reid, A. T}
     18126}
     18127@article{Herring2010,
     18128  year = {2010},
     18129  title = {Coherent electron interference from amorphous
     18130TEM specimens},
     18131  journal = {Journal of Electron Microscopy},
     18132  author = {Herring, R.A. and Saitoh, K. and Tanaka, N. and Tanji, T.}
     18133}
     18134@article{Schmidt2008,
     18135  number = {6},
     18136  year = {2008},
     18137  title = {Spherical nanosized focal spots unravels the interior of cells},
     18138  pages = {539-544},
     18139  journal = {Nature Methods},
     18140  volume = {5},
     18141  author = {Schmidt, R. and Wurm, C.A. and Jakobs, S. and Engelhardt, J. and Egner, A. and Hell, S.W.}
     18142}
     18143@article{Kner2009,
     18144  number = {5},
     18145  year = {2009},
     18146  title = {Super-resolution video microscopy of live cells by structured illumination},
     18147  pages = {339-344},
     18148  journal = {Nature Methods},
     18149  volume = {6},
     18150  author = {Kner, P. and Chhun, B.B. and Griffs, E.R. and Winoto, L. and Gustafsson, M.G.L.}
     18151}
     18152@article{Heintzmann2009,
     18153  year = {2009},
     18154  title = {Subdiffraction resolution in continuous samples},
     18155  pages = {362-364},
     18156  journal = {Nature Photonics},
     18157  volume = {3},
     18158  author = {Heintzmann, R. and Gustafsson, M.G.L.}
     18159}
     18160@article{Boulanger2010,
     18161  number = {2},
     18162  year = {2010},
     18163  title = {Patch-Based Nonlocal Functional for Denoising
     18164Fluorescence Microscopy Image Sequences},
     18165  pages = {442-454},
     18166  journal = {IEEE Transactions on Medical Image Processing},
     18167  volume = {29},
     18168  author = {Boulanger, J. and Kervrann, C. and Bouthemy, P. and Elbau, P. and Sibarita, J.-B. and Salamero, J.}
     18169}
     18170@article{Carlton2010,
     18171  year = {2010},
     18172  title = {Fast live simultaneous multiwavelength four-dimensional optical microscopy},
     18173  journal = {Proceedings of the National Academy of Sciences},
     18174  author = {Carlton, P.M. and Boulanger, J. and Kervrann, C. and Sibarita, J.-B. and Salamero, J. and Gordon-Messer, S. and Bressan, D. and Haber, J.E. and Haase, S. and Shao, L. and Winoto, L. and Matsuda, A. and Kner, P. and Uzawa, S. and Gustafsson, M.G.F. and Kam, Z. and Agard, D.A. and Sedat, J.W.}
     18175}
     18176@article{Grabenbauer2005,
     18177  year = {2005},
     18178  title = {Correlative microscopy and electron tomography of GFP through photooxidation},
     18179  pages = {857-862},
     18180  journal = {Nature Methods},
     18181  volume = {2},
     18182  author = {Grabenbauer, M. and Geerts, W.J. and Fernadez-Rodriguez, J. and Hoenger, A. and Koster, A.J. and Nilsson, T.}
     18183}
     18184@article{Folling2008,
     18185  year = {2008},
     18186  title = {Fluorescence nanoscopy by ground-state depletion and single-molecule return},
     18187  pages = {943-945},
     18188  journal = {Nature Methods},
     18189  volume = {5},
     18190  author = {{F\"olling}, J. and Bossi, M. and Bock, H. and Medda, R. and Wurm, C.A. and Hein, B. and Jacobs, S. and Eggeling, C. and Hell, S.W.}
     18191}
     18192@article{Agronskaia2008,
     18193  number = {2},
     18194  year = {2008},
     18195  title = {Integrated fluorescence and transmission electron microscopy},
     18196  pages = {183-189},
     18197  journal = {Journal of Structural Biology},
     18198  volume = {164},
     18199  author = {Agronskaia, A.V. and Valtentijn, J.A. and Driel, L.F. van and Schneidenberg, C. and Humbel, B.M. and Henegouwen, P. and Verkleij, A.J. and Koster, A.J. and Gerritsen, H.C.}
     18200}
     18201@article{Aguet2009,
     18202  number = {8},
     18203  year = {2009},
     18204  title = {Super-resolution orientation estimation and localization of fluorescent dipoles using 3-D steerable filters},
     18205  pages = {6829},
     18206  journal = {Optics Express},
     18207  volume = {17},
     18208  author = {Aguet, F. and Geissbuhler, S. and Marki, I. and Lasser, T. and Unser, M.}
     18209}
     18210@article{Giepmans2005,
     18211  year = {2005},
     18212  title = {Correlated light and electron microscopic imaging of multiple endogenous proteins using quantum dots},
     18213  pages = {743-749},
     18214  journal = {Nature Methods},
     18215  volume = {10},
     18216  author = {Giepmans, B.N.G. and Deerinck, T.J. and Smarr, B.L. and Jones, Y.Z. and Ellisman, M.H.}
     18217}
     18218@article{Stallinga2004,
     18219  number = {9},
     18220  year = {2004},
     18221  title = {Light distribution close to focus in biaxially       birefringent media
     18222},
     18223  pages = {1785-1788},
     18224  journal = {Journal of the Optical Society of America A},
     18225  volume = {21},
     18226  author = {Stallinga, S.}
     18227}
     18228@article{Wang2010,
     18229  number = {4},
     18230  year = {2010},
     18231  title = {In vitro and in vivo imaging with quantum dots },
     18232  pages = {1397-1415},
     18233  journal = {Analytical and Bioanalytical Chemistry },
     18234  volume = {397},
     18235  author = {Wang, C. and Gao, X. and Su, X.}
     18236}
     18237@article{Jamieson2007,
     18238  number = {31},
     18239  year = {2007},
     18240  title = {Biological applications of quantum dots },
     18241  pages = {4717-4732},
     18242  journal = {Biomaterials},
     18243  volume = {28},
     18244  author = {Jamieson, T. and Bakhshi, R. and Petrova, D. and Pocock, R. and Imani, M. and Seifalian, A.M.}
     18245}
     18246@article{Abraham2009,
     18247  number = {26},
     18248  year = {2009},
     18249  title = {Quantitative study of single molecule location estimation techniques },
     18250  pages = {23352-23373},
     18251  journal = {Optics Express},
     18252  volume = {17},
     18253  author = {Abraham, A.V. and Ram, S. and Chao, J. and Ward, E.S. and Ober, R.J.}
     18254}
     18255@article{Chao2009,
     18256  number = {26},
     18257  year = {2009},
     18258  title = {A comparative study of high resolution microscopy imaging modalities using a three-dimensional resolution measure},
     18259  pages = {24377-24401},
     18260  journal = {Optics Express},
     18261  volume = {17},
     18262  author = {Chao, J. and Ram, S. and Ward, E.S. and Ober, R.J.}
     18263}
     18264@article{Ram2008,
     18265  number = {12},
     18266  year = {2008},
     18267  title = {High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells },
     18268  pages = {6025-6043},
     18269  journal = {Biophysical Journal},
     18270  volume = {95},
     18271  author = {Ram, S. and Prabhar, P. and Chao, J. and Ward, E.S. and Ober, R.J.}
     18272}
     18273@article{Wilson1997,
     18274  year = {1997},
     18275  title = {The imaging of dielectric point scatterers in conventional and confocal polarisation microscopes},
     18276  pages = {298-313},
     18277  journal = {Optics Communications},
     18278  volume = {141},
     18279  author = {Wilson, T. and Juskaitis, R. and Higdon, P.D.}
     18280}
     18281@article{Stallinga2010,
     18282  number = {24},
     18283  year = {2010},
     18284  title = {Accuracy of the {Gaussian} Point Spread Function model in {2D} localization microscopy
     18285},
     18286  pages = {24461-24476},
     18287  journal = {Optics Express},
     18288  volume = {18},
     18289  author = {Stallinga, S. and Rieger, B.}
     18290}
     18291@article{Barrett1995,
     18292  number = {5},
     18293  year = {1995},
     18294  title = {Objective assessment of image quality. II. Fisher information, Fourier crosstalk, and
     18295figures of merit for task performance},
     18296  pages = {834-853},
     18297  journal = {Journal of the Optical Society of America A},
     18298  volume = {12},
     18299  author = {Barrett, H. H. and Denny, J.L. and Wagner, R.F. and Myers, K.J.}
     18300}
     18301@article{Foreman2007,
     18302  number = {21},
     18303  year = {2007},
     18304  title = {Photon statistics in single molecule
     18305orientational imaging},
     18306  pages = {13597-13606},
     18307  journal = {Optics Express},
     18308  volume = {15},
     18309  author = {Foreman, M.R. and Sherif, S.S. and {T\"or\"ok}, P.}
     18310}
     18311@article{Haeberle2003,
     18312  number = {22},
     18313  year = {2003},
     18314  title = {Point spread function of optical microscopes
     18315imaging through stratified media},
     18316  pages = {2964-2969},
     18317  journal = {Optics Express},
     18318  volume = {11},
     18319  author = {{Haeberl\'e}, O. and Ammar, M. and Furukawa, H. and Tenjimbayashi, K. and {T\"or\"ok}, P.}
     18320}
     18321@article{McGuire1994,
     18322  number = {22},
     18323  year = {1994},
     18324  title = {Polarization aberrations.
     183251. Rotationally symmetric optical systems},
     18326  pages = {5080-5100},
     18327  journal = {Applied Optics},
     18328  volume = {33},
     18329  author = {McGuire, J.P. Jr. and Chipman, R.A.}
     18330}
     18331@article{McGuire1994a,
     18332  number = {22},
     18333  year = {1994},
     18334  title = {Polarization aberrations.
     183352. Tilted and decentered optical systems},
     18336  pages = {5101-5107},
     18337  journal = {Applied Optics},
     18338  volume = {33},
     18339  author = {McGuire, J.P. Jr. and Chipman, R.A.}
     18340}
     18341@article{Muller2005,
     18342  year = {2005},
     18343  title = {Measures of performance in nonlinear estimation
     18344tasks: prediction of estimation performance at low signal-to-noise ratio},
     18345  pages = {3697-3715},
     18346  journal = {Physics in Medicine and Biology},
     18347  volume = {50},
     18348  author = {{M\"uller}, S.P. and Abbey, C.K. and Rybicki, F.J. and Moore, S.C. and Kijewski, M.F.}
     18349}
     18350@article{Ji2010,
     18351  number = {2},
     18352  year = {2010},
     18353  title = {Adaptive optics via pupil segmentation for
     18354high-resolution imaging in biological tissues},
     18355  pages = {141-150},
     18356  journal = {Nature Methods},
     18357  volume = {7},
     18358  author = {Ji, N. and Milkie, D.E. and Betzig, E.}
     18359}
     18360@article{Wombacher2010,
     18361  number = {9},
     18362  year = {2010},
     18363  title = {Live-cell super-resolution imaging with trimethoprim conjugates},
     18364  pages = {717-722},
     18365  journal = {Nature Methods},
     18366  volume = {7},
     18367  author = {Wormbacher, R. and Heidbreder, M. and Linde, S. van de and Sheetz, M.P. and Heilemann, M. and Cornish, V.W. and Sauer, M.}
     18368}
     18369@article{Henriques2010,
     18370  number = {5},
     18371  year = {2010},
     18372  title = {Quick{PALM}: 3D real-time photoactivation nanoscopy image processing in {ImageJ}},
     18373  pages = {339-340},
     18374  journal = {Nature Methods},
     18375  volume = {7},
     18376  author = {Henriques, R. and Lelek, M. and Fornasiero, E.F. and Valtorta, F. and Zimmer, C. and Mhlanga, M.M.}
     18377}
     18378@article{Dertinger2009,
     18379  number = {52},
     18380  year = {2009},
     18381  title = {Fast, background-free, {3D} super-resolution optical fluctuation imaging {(SOFI)}},
     18382  pages = {22287-22292},
     18383  journal = {Proceedings of the National Academy of Sciences USA},
     18384  volume = {106},
     18385  author = {Dertinger, T. and Colyer, R. and Iyer, G. and Weiss, S. and Enderlein, J.}
     18386}
     18387@article{Dertinger2010,
     18388  number = {18},
     18389  year = {2010},
     18390  title = {Achieving increased resolution and more pixels
     18391with Superresolution Optical Fluctuation
     18392Imaging {(SOFI)}},
     18393  pages = {18875-11885},
     18394  journal = {Optics Express},
     18395  volume = {18},
     18396  author = {Dertinger, T. and Colyer, R. and Vogel, R. and  Enderlein, J. and Weiss, S.}
     18397}
     18398@article{Landau1967,
     18399  number = {1},
     18400  year = {1967},
     18401  title = {Necessary  density conditions for sampling and interpolation of certain entire function},
     18402  pages = {37-52},
     18403  journal = {Acta Mathematica},
     18404  volume = {117},
     18405  author = {Landau, H.}
     18406}
     18407@article{Heilemann2008,
     18408  number = {33},
     18409  year = {2008},
     18410  title = {Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes},
     18411  pages = {6172-6176},
     18412  journal = {Angewannte Chemie},
     18413  volume = {47},
     18414  author = {Heilemann, M. and Linde, S. van de and {Sch\"uttpelz}, M. and Kasper, R. and Seefeldt, B. and Mukherjee, A. and Tinnefeld, P. and Sauer, M.}
     18415}
     18416@article{Gustafsson2000,
     18417  number = {2},
     18418  year = {2000},
     18419  title = {Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy},
     18420  pages = {82-87},
     18421  journal = {Journal of Microscopy},
     18422  volume = {198},
     18423  author = {Gustafsson, M.G.L.}
     18424}
     18425@article{Dedecker2007,
     18426  year = {2007},
     18427  title = {Orientational effects in the excitation
     18428and de-excitation of single molecules interacting with donut-mode laser beams},
     18429  pages = {3372-3383},
     18430  journal = {Optics Express},
     18431  volume = {15},
     18432  author = {Dedecker, P. and Muls, B. and Hofkens, J. and  Enderlein, J. and Hotta, J. }
     18433}
     18434@article{Smal2010,
     18435  year = {2010},
     18436  title = {Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy},
     18437  pages = {282-301},
     18438  journal = {IEEE Transactions on Medical Imaging},
     18439  volume = {29},
     18440  author = {Smal, I. and Loog, M. and Niessen, W.J.  and  Meijering, E.}
     18441}
     18442@article{Akhmanova2008,
     18443  year = {2008},
     18444  title = {Tracking the ends: a dynamic protein network controls the fate of microtubule tips},
     18445  pages = {309-322},
     18446  journal = {Nature Reviews Molecular Cell Biology},
     18447  volume = {9},
     18448  author = {Akhmanova, A. and  Steinmetz, M.O.}
     18449}
     18450@article{Heuvel2008,
     18451  year = {2008},
     18452  title = {Single-Molecule Observation of Anomalous Electrohydrodynamic Orientation of Microtubules
     18453},
     18454  pages = {118301},
     18455  journal = {Physical Review Letters},
     18456  volume = {101},
     18457  author = {Heuvel, M.G.L. van den and Bondesan, R. and Cosentino Langomarsino, M. and Dekker, C.}
     18458}
     18459@article{Lupini2008,
     18460  number = {6},
     18461  year = {2008},
     18462  title = {Rapid autotuning for crystalline specimens from an inline hologram},
     18463  pages = {195-201},
     18464  journal = {Journal of Electron Microscopy},
     18465  volume = {57},
     18466  author = {Lupini, A.R. and Pennycook, S.J.}
     18467}
     18468@article{Hell2009a,
     18469  year = {2009},
     18470  title = {Diffraction-unlimited three-dimensional optical
     18471nanoscopy with opposing lenses},
     18472  pages = {381-387},
     18473  journal = {Nature Photonics},
     18474  volume = {3},
     18475  author = {Hell, S.W. and Schmidt, R. and Egner, A.}
     18476}
     18477@article{Manghi2010,
     18478  year = {2010},
     18479  title = {Probing {DNA} conformational changes
     18480with high temporal resolution by tethered
     18481particle motion},
     18482  pages = {046003},
     18483  journal = {Physical Biology},
     18484  volume = {7},
     18485  author = {Manghi, M. and Tardin, C. and Baglio, J. and Rousseau, P. and Salome, L. and Destainville, N.}
     18486}
     18487@article{Destainville2009,
     18488  number = {11},
     18489  year = {2009},
     18490  title = {Microscopic Mechanism for Experimentally Observed Anomalous Elasticity of DNA in Two Dimensions},
     18491  pages = {4464-4469},
     18492  journal = {Biophysical Journal},
     18493  volume = {96},
     18494  author = {Destainville, Nicolas and Manghi, Manoel and Palmeri, John}
     18495}
     18496@article{Barthel2010,
     18497  year = {2010},
     18498  title = {Aberration measurement in {HRTEM}: {Implementation} and diagnostic use of numerical procedures for the highly precise recognition of diffractogram patterns},
     18499  pages = {27-46},
     18500  journal = {Ultramicroscopy},
     18501  volume = {111},
     18502  author = {Barthel, J. and Thust, A.}
     18503}
     18504@article{Perfetti2010,
     18505  year = {2010},
     18506  title = {X-ray micro tomography and image analysis as complementary methods for morphological characterization and coating thickness measurement
     18507of coated particles},
     18508  pages = {663-675},
     18509  journal = {Advanced Powder Technology},
     18510  volume = {21},
     18511  author = {Perfetti, G. and Casteele, E. van de and Rieger, B. and Wildeboer, W.J. and Meesters, G.M.H.}
     18512}
     18513@article{Stallinga2005,
     18514  year = {2005},
     18515  title = {Compact description of substrate-related aberrations in high numerical aperture optical disk readout},
     18516  pages = {949-958},
     18517  journal = {Applied Optics},
     18518  volume = {44},
     18519  author = {Stallinga, S.}
     18520}
     18521@article{Muhlich2009,
     18522  number = {7},
     18523  year = {2009},
     18524  title = {Analysis of Multiple Orientations},
     18525  pages = {1424-1437},
     18526  journal = {IEEE Transactions on Image Processing},
     18527  volume = {18},
     18528  author = {M{\"u}hlich, M. and Aach, T.}
     18529}
     18530@inproceedings{Franken2007,
     18531  series = {4485},
     18532  year = {2007},
     18533  title = {Nonlinear diffusion on the 2D Euclidean Motion group},
     18534  booktitle = {LNCS},
     18535  pages = {461-472},
     18536  author = {Franken, E.M. and Duits, R. and Haar Romenij, B.M. ter}
     18537}
     18538@inproceedings{Franken2006,
     18539  series = {3954},
     18540  year = {2006},
     18541  title = {An Efficient Method for Tensor Voting using Steerable Filters},
     18542  booktitle = {LNCS},
     18543  pages = {228-240},
     18544  author = {Franken, E.M.  and  Almsick, M.A. van and  Rongen, P.M.J. and Florack, L.M.J. and  Haar Romenij, B.M. ter}
     18545}
     18546@inproceedings{Faas2007,
     18547  series = {4678},
     18548  year = {2007},
     18549  title = {A crossing detector based on the structure tensor},
     18550  booktitle = {LNCS},
     18551  pages = {212-220},
     18552  editor = {Blanc-Talon, J.},
     18553  author = {Faas, F.G.A. and Vliet, L.J. van}
     18554}
     18555@inproceedings{Herberthsson2006,
     18556  series = {SSBA},
     18557  month = {March},
     18558  year = {2006},
     18559  title = {Pairs of Orientation in the Plane},
     18560  booktitle = {Proceedings of the {SSBA} Symposium on Image Analysis},
     18561  author = {Herberthsson, M. and Brun, A. and Knutsson, H.}
     18562}
     18563@book{Stein1971,
     18564  year = {1971},
     18565  title = {Introduction to Fourier Analysis on Euclidean Spaces},
     18566  publisher = {Princeton University Press},
     18567  author = {Stein, E. and Stein, E.M. and Weiss, G.}
     18568}
     18569@article{Cordes2010a,
     18570  year = {2010},
     18571  title = {Resolving Single-Molecule Assembled Patterns with Superresolution Blink-Microscopy},
     18572  pages = {645-651},
     18573  journal = {NanoLetters},
     18574  volume = {10},
     18575  author = {Cordes, T. and Strackharn, M. and Stahl, S.W.  and Summerer, W. and Steinhauer, C. and  Forthmann, C. and Puchner, E.M. and Vogelsang, J. and Gaub H.E. and  Tinnefeld, P.}
     18576}
     18577@article{Luengo2010,
     18578  number = {6},
     18579  year = {2010},
     18580  title = {Constrained and Dimensionality-Independent Path Openings},
     18581  pages = {1587-1595},
     18582  journal = {IEEE Transactions on Image Processing},
     18583  volume = {19},
     18584  author = {Luengo Hendriks, C.L.}
     18585}
     18586@article{Luengo2007a,
     18587  year = {2007},
     18588  title = {Improving the accuracy of isotropic granulometries},
     18589  pages = {865-872},
     18590  journal = {Pattern Recognition Letters},
     18591  volume = {28},
     18592  author = {Luengo Hendriks, C.L. and Kempen, G.M.P. and Vliet, L.J. van}
     18593}
     18594@article{Luengo2007,
     18595  number = {19},
     18596  year = {2007},
     18597  title = {Automatic channel unmixing for high-throughput quantitative analysis of fluorescence images},
     18598  pages = {12306-123117},
     18599  journal = {Optics Express},
     18600  volume = {15},
     18601  author = {Luengo Hendriks, C.L. and {Ker\"a}nen, S.V.E. and Biggin, M.D. and Knowles, D.W.}
     18602}
     18603@article{Caarls2010,
     18604  year = {2010},
     18605  title = {Characterization of Coupled Ground State and Excited State Equilibria by Fluorescence Spectral Deconvolution},
     18606  pages = {181-190},
     18607  journal = {Journal of Fluorescence},
     18608  volume = {20},
     18609  author = {Caarls, W. and Celej, M.S. and Demchenko, A.P. and Jovin, T.M.}
     18610}
     18611@article{Celej2009,
     18612  year = {2009},
     18613  title = {A Triple-Emission Fluorescent Probe Reveals Distinctive Amyloid Fibrillar Polymorphism of Wild-Type R-Synuclein and Its Familial Parkinson's Disease Mutants},
     18614  pages = {7465-7472},
     18615  journal = {Biochemistry},
     18616  volume = {48},
     18617  author = {Celej, M.S. and Caarls, W. and Demchenko, A.P. and Jovin, T.M.}
     18618}
     18619@article{Nagy2010,
     18620  number = {38},
     18621  year = {2010},
     18622  title = {Distribution of resting and ligand-bound {ErbB1} and {ErbB2} receptor tyrosine kinases in living cells using number and brightness analysis},
     18623  pages = {16524-16529},
     18624  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     18625  volume = {107},
     18626  author = {Nagy, P. and Claus, J. and Jovin, T.M. and Arndt-Jovin, D.J.}
     18627}
     18628@article{Finzi2010,
     18629  number = {25},
     18630  year = {2010},
     18631  title = {Single-molecule Approaches to Probe the Structure, Kinetics, and Thermodynamics of Nucleoprotein Complexes That Regulate Transcription},
     18632  pages = {18973-18978},
     18633  journal = {JOURNAL OF BIOLOGICAL CHEMISTRY},
     18634  volume = {285},
     18635  author = {Finzi, L. and Dunlap, D.D.}
     18636}
     18637@article{Engelhardt2011,
     18638  year = {2010},
     18639  title = {Molecular Orientation Affects Localization Accuracy in Superresolution Far-Field Fluorescence Microscopy},
     18640  pages = {209-213},
     18641  journal = {NanoLetters},
     18642  volume = {11},
     18643  author = {Engelhardt, J. and Keller, J. and Hoyer, P. and Reuss, M. and Staudt, T. and Hell, S.W.}
     18644}
     18645@article{Lindner2011,
     18646  year = {2011},
     18647  title = {Force-free measurements of the conformations of {DNA} molecules tethered to a wall},
     18648  pages = {011916},
     18649  journal = {Physical Review E},
     18650  volume = {83},
     18651  author = {Lindner, M. and Nir, G. and Medalion, S. and Dietrich, H.R.C. and Rabin, Y. and Garini, Y.}
     18652}
     18653@article{Beleggia2004,
     18654  year = {2004},
     18655  title = {On the transport of intensity technique for phase retrieval},
     18656  pages = {37-49},
     18657  journal = {Ultramicroscopy},
     18658  volume = {102},
     18659  author = {Beleggia, M. and Schofield, M.A. and Volkov, V.V. and Zhu, Y.}
     18660}
     18661@article{Bronnikov2002,
     18662  year = {2002},
     18663  title = {Theory of quatitative phase-contrast computed tomography},
     18664  pages = {472-480},
     18665  journal = {Journal of the Optical Society of America A},
     18666  volume = {19},
     18667  author = {Bronnikov, A.V.}
     18668}
     18669@article{Donoho2006,
     18670  number = {4},
     18671  year = {2006},
     18672  title = {Compressed Sensing},
     18673  pages = {1289-1306},
     18674  journal = {IEEE Transactions of Information Theory},
     18675  volume = {52},
     18676  author = {Donoho, D.L.}
     18677}
     18678@article{Jesacher2005,
     18679  year = {2005},
     18680  title = {Shadow Effects in Spiral Phase Contrast Microscopy},
     18681  pages = {233902},
     18682  journal = {Physics Review Letters},
     18683  volume = {94},
     18684  author = {Jesacher, A. and {F\"urhapter}, S. and Bernet, S. and Ritsch-Marte, M.}
     18685}
     18686@article{Furhapter2005,
     18687  number = {15},
     18688  year = {2005},
     18689  title = {Spiral interferometry},
     18690  pages = {1953-1955},
     18691  journal = {Optics Letters},
     18692  volume = {30},
     18693  author = {{F\"urhapter}, S. and Jesacher, A. and Bernet, S. and Ritsch-Marte, M.}
     18694}
     18695@article{Aarts2011,
     18696  year = {2011},
     18697  title = {Three-dimensional atomic imaging of crystalline
     18698nanoparticles},
     18699  journal = {Nature},
     18700  author = {Aaarts, S. van and Batenburg, K.J. and Rossell, M.D. and Erni, R. and Tendeloo, G. van}
     18701}
     18702@article{jensen_helium,
     18703  year = {2006},
     18704  title = {A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography},
     18705  pages = {231-240},
     18706  journal = {Journal of Structural Biology},
     18707  volume = {153},
     18708  author = {Iancu, C.V. and Wright, E.R. and Heymann, J.B. and Jensen, G.J.}
     18709}
     18710@inproceedings{Noorden2010,
     18711  series = {LNCS 6362},
     18712  month = {September 20-24},
     18713  year = {2010},
     18714  title = {A Comparison of the Cingulum in Amyotrophic Lateral Sclerosis using Kernel Matchin},
     18715  booktitle = {Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010},
     18716  pages = {249-256},
     18717  editor = {T. Jiang, T. and Navab, N. and Pluim, J.P.W. and  Viergever, M.A.},
     18718  address = {Beijing, China},
     18719  publisher = {Springer},
     18720  author = {Noorden, S. van and Caan, M.W.A. and Graaf, M. van der and Vliet, L.J. van and Vos, F.M.}
     18721}
     18722@article{McMorran2011,
     18723  year = {2011},
     18724  title = {Electron Vortex Beams with High Quanta of Orbital Angular Momentum},
     18725  pages = {192-195},
     18726  journal = {Science},
     18727  volume = {331},
     18728  author = {McMorran, B.J. and Agrawal, A. and Anderson, I.M. and Herzing, A.A. and Lezec, H.J. and McClelland, J.J. and unguris, J.}
     18729}
     18730@article{Voortman2011,
     18731  year = {2011},
     18732  title = {A fast algorithm for computing and correcting the
     18733{CTF} for tilted, thick specimens in {TEM}},
     18734  pages = {1029-1036},
     18735  journal = {Ultramicroscopy},
     18736  volume = {111},
     18737  author = {Voortman, L.M. and Stallinga, S. and Schoenmakers, R.H.M. and Vliet, L.J. van and Rieger, B.}
     18738}
     18739@article{Karuppasamy2011,
     18740  year = {2011},
     18741  title = {Radiation damage in single-particle cryo-electron
     18742microscopy: effects of dose and dose rate},
     18743  pages = {398-412},
     18744  journal = {Journal of Synchrotron Radiation},
     18745  volume = {18},
     18746  author = {Karuppasamy, M. and Karimi Nejadasl, F and Vulovic, M. and Koster, A.J. and Ravelli, R.B.G. }
     18747}
     18748@article{Krysting2011,
     18749  year = {2011},
     18750  title = {Heat Profiling of Three-Dimensionally Optically Trapped Gold Nanoparticles using Vesicle Cargo Release},
     18751  pages = {888-892},
     18752  journal = {Nano Letters},
     18753  volume = {11},
     18754  author = {Krysting, A. and Bendix, P.M. and Stamou, D.G. and Oddershede, L.B.}
     18755}
     18756@article{Schutz2001,
     18757  number = {2},
     18758  year = {2001},
     18759  title = {Imaging Single Molecules in Three Dimensions},
     18760  pages = {69-74},
     18761  journal = {Single Molecules},
     18762  volume = {2},
     18763  author = {{Sch\"utz}, G.J. and Axman M. and Schindler, H.}
     18764}
     18765@article{vanElburg2007,
     18766  number = {1},
     18767  year = {2007},
     18768  title = {Improved correction of axial geometrical distortion in index-mismatched fluorescent confocal            microscopic images using high-aperture objective lenses},
     18769  pages = {45-54},
     18770  journal = {Journal of Microscopy},
     18771  volume = {228},
     18772  author = {van Elburg, H.J. and Kuypers, L.C. and Decraemer, W.F. and Dirckx, J.J.J.}
     18773}
     18774@article{vandenBroek2006,
     18775  number = {1},
     18776  year = {2006},
     18777  title = {Real-time observation of {DNA} looping dynamics of Type {IIE} restriction enzymes {NaeI} and {NarI}},
     18778  pages = {167-174},
     18779  journal = {Nucleic Acids Research},
     18780  volume = {34},
     18781  author = {van den Broek, B. and Vanzi, F. and Normanno, D. and Pavone, F.S. and Wuite, G.J.L.}
     18782}
     18783@article{Finzi1995,
     18784  number = {5196},
     18785  year = {1995},
     18786  title = {Measurement of Lactose Repressor-Mediated Loop Formation and Breakdown in Single DNA Molecules},
     18787  pages = {378-380},
     18788  journal = {Science},
     18789  volume = {267},
     18790  author = {Finzi, L. and Gelles, J.}
     18791}
     18792@article{deGennes1976a,
     18793  number = {4},
     18794  year = {1976},
     18795  title = {Dynamics of Entangled Polymer Solutions. {I.} The Rouse Model},
     18796  pages = {587-593},
     18797  journal = {Macromolecules},
     18798  volume = {9},
     18799  author = {De Gennes, P.G.}
     18800}
     18801@article{deGennes1976b,
     18802  number = {4},
     18803  year = {1976},
     18804  title = {Dynamics of Entangled Polymer Solutions. {II.} Inclusion of Hydrodynamic Interactions},
     18805  pages = {594-598},
     18806  journal = {Macromolecules},
     18807  volume = {9},
     18808  author = {De Gennes, P.G.}
     18809}
     18810@article{Robertson2006,
     18811  number = {19},
     18812  year = {2006},
     18813  title = {Diffusion of isolated DNA molecules: {Dependence} on length and topology},
     18814  pages = {7310-7314},
     18815  journal = {Proceedings of the National Academy of Sciences of the USA},
     18816  volume = {103},
     18817  author = {Robertson, R.M.}
     18818}
     18819@article{Derjaguin1941,
     18820  year = {1941},
     18821  title = {Theory of the stability of strongly charged lyophobic sols and of the adhesion of strongly charged      particles in solutions of electrolytes.},
     18822  journal = {Acta Physico Chimica URSS},
     18823  volume = {14},
     18824  author = {Derjaguin, B. and Landau, L.}
     18825}
     18826@book{Verwey1948,
     18827  year = {1948},
     18828  title = {Theory of the stability of lyophobic colloids},
     18829  publisher = {Elsevier},
     18830  author = {Verwey, E.J.W. and Overbeek, J.Th.G.}
     18831}
     18832@article{Debye1923,
     18833  year = {1923},
     18834  title = {The theory of electrolytes. {I.} Lowering of freezing point and related phenomena},
     18835  pages = {185-206},
     18836  journal = {Physikalische Zeitschrift},
     18837  volume = {24},
     18838  author = {Debye, P. and {H\"uckel}, E.}
     18839}
     18840@book{Lyklema1991,
     18841  year = {1991},
     18842  title = {Fundamentals of Interface and Colloid Science},
     18843  volume = {Volume I: Fundamentals},
     18844  address = {London, UK},
     18845  publisher = {Academic Press Limited},
     18846  author = {Lyklema, J. and van Leeuwen, H.P. and van Vliet, T. and Cazabat, A.-M}
     18847}
     18848@book{Happel1973,
     18849  edition = {2nd edition},
     18850  year = {1973},
     18851  title = {Low Reynolds number hydrodynamics},
     18852  address = {Leyden, The Netherlands},
     18853  publisher = {Noordhoff},
     18854  author = {Happel, John}
     18855}
     18856@article{Bevan2000,
     18857  number = {3},
     18858  year = {2000},
     18859  title = {Hindered diffusion of colloidal particles very near to a wall: Revisited},
     18860  pages = {1128-1236},
     18861  journal = {Journal of Chemical Physics},
     18862  volume = {113},
     18863  author = {Bevan, Michael A. and Prieve, Dennis C.}
     18864}
     18865@article{Stallinga2005a,
     18866  year = {2005},
     18867  title = {Finite conjugate spherical aberration compensation in high numerical-aperture optical disc read-out},
     18868  pages = {7307-7312},
     18869  journal = {Applied Optics},
     18870  volume = {44},
     18871  author = {Stallinga, S.}
     18872}
     18873@article{Fan2009,
     18874  number = {5},
     18875  year = {2009},
     18876  title = {Studying {RecBCD} Helicase Translocation Along {chi-DNA} Using Tethered Particle Motion with a Stretching Force},
     18877  pages = {1875-1883},
     18878  journal = {Biophysical Journal},
     18879  volume = {96},
     18880  author = {Fan, Hsiu-Fang and Li, Hung-Wen}
     18881}
     18882@article{Geggier2010,
     18883  number = {35},
     18884  year = {2010},
     18885  title = {Sequence dependence of {DNA} bending rigidity},
     18886  pages = {15421-15426},
     18887  journal = {Proceedings of the National Academy of Sciences of the USA},
     18888  volume = {107},
     18889  author = {Geggier, Stephanie and Vologodskii, Alexander}
     18890}
     18891@article{Smith1996b,
     18892  number = {4},
     18893  year = {1996},
     18894  title = {Dynamical Scaling of {DNA} Diffusion Coefficients},
     18895  pages = {1372-1373},
     18896  journal = {Macromolecules},
     18897  volume = {29},
     18898  author = {Smith, Douglas E. and Perkins, Thomas T. and Chu, Steven}
     18899}
     18900@article{Hodgson1991,
     18901  number = {10},
     18902  year = {1991},
     18903  title = {Dilute solution behavior of cyclic and linear polyelectrolytes},
     18904  pages = {7653-7663},
     18905  journal = {Journal of Chemical Physics},
     18906  volume = {95},
     18907  author = {Hodgson, Donald F. and Amis, Eric J.}
     18908}
     18909@inproceedings{Rieger2011,
     18910  series = {LNCS 6688},
     18911  month = {May 23-27},
     18912  year = {2011},
     18913  title = {Continuous orientation representation for arbitrary dimensions - a generalized Knutsson mapping},
     18914  booktitle = {Proceedings of the 17th Scandinavian Conference on Image Analysis, SCIA 2011},
     18915  pages = {774-783},
     18916  editor = {Heyden, A. and Kahl, F.},
     18917  address = {Heidelberg},
     18918  publisher = {Springer},
     18919  author = {Rieger, B. and Vliet, L.J. van and Verbeek, P.W.}
     18920}
     18921@book{FundFluidMech,
     18922  edition = {3rd},
     18923  year = {1998},
     18924  title = {Fundamentals of Fluid Mechanics},
     18925  address = {New York},
     18926  publisher = {John Wiley \& Sons, Inc},
     18927  author = {Munson, Bruce R. and Young, Donald F. and Okiishi, Theodore H.}
     18928}
     18929@article{Rosenthal2003,
     18930  number = {4},
     18931  year = {2003},
     18932  title = {Optimal Determination of Particle Orientation,
     18933Absolute Hand, and Contrast Loss in Single-particle Electron Cryomicroscopy},
     18934  pages = {721-745},
     18935  journal = {Journal of Molecular Biology},
     18936  volume = {333},
     18937  author = {Rosenthal, P.B. and Henderson, R.}
     18938}
     18939@article{Wicker2009,
     18940  number = {18},
     18941  year = {2009},
     18942  title = {Characterisation of a resolution enhancing image inversion interferometer},
     18943  pages = {15491-15501},
     18944  journal = {Optics Express},
     18945  volume = {17},
     18946  author = {Wicker, K. and Sindbert, S. and Heintzmann, R.}
     18947}
     18948@article{Wicker2007,
     18949  number = {19},
     18950  year = {2007},
     18951  title = {Interferometric resolution improvement for confocal microscopes},
     18952  pages = {12206-12216},
     18953  journal = {Optics Express},
     18954  volume = {15},
     18955  author = {Wicker, K. and Heintzmann, R.}
     18956}
     18957@article{Schermelleh2010,
     18958  number = {2},
     18959  year = {2010},
     18960  title = {A guide to super-resolution fluorescence microscopy},
     18961  pages = {165-175},
     18962  journal = {The journal of cell biology},
     18963  volume = {190},
     18964  author = {Schermelleh, L. and Heintzmann, R. and Leonhardt, H.}
     18965}
     18966@article{Ruckstuhl2004,
     18967  number = {18},
     18968  year = {2004},
     18969  title = {Supercritical angle fluorescence {(SAF)} microscopy},
     18970  pages = {4246-4254},
     18971  journal = {Optics Express},
     18972  volume = {12},
     18973  author = {Ruckstuhl, T. and Verdes, D.}
     18974}
     18975@article{Rohrbach2009,
     18976  number = {19},
     18977  year = {2009},
     18978  title = {Artifacts resulting from imaging in scattering media: a theoretical prediction},
     18979  pages = {3041-3043},
     18980  journal = {Optics Letters},
     18981  volume = {34},
     18982  author = {Rohrbach, A.}
     18983}
     18984@article{Murdy2010,
     18985  year = {2010},
     18986  title = {Isotropic Diffraction-Limited Focusing Using a Single Objective Lens},
     18987  pages = {203903},
     18988  journal = {Physical Review Letters},
     18989  volume = {105},
     18990  author = {Murdy, E. and Moral, E. le and Ferrand, P. and Chaumet, P.C. and Sentenac, A. }
     18991}
     18992@article{Min2009,
     18993  number = {22},
     18994  year = {2009},
     18995  title = {Imaging chromophores with undetectable fluorescence by stimulated emission microscopy},
     18996  pages = {1105-1109},
     18997  journal = {Nature},
     18998  volume = {461},
     18999  author = {Min, W. and Lu, S. and Chong, S. and Roy, R. and Holtom, G.R. and Xie, X.S.}
     19000}
     19001@inbook{Manley2010,
     19002  series = {Methods in Enzymology},
     19003  year = {2010},
     19004  title = {Single-Particle Tracking Photoactivated Localization
     19005Microscopy for Mapping Single-Molecule Dynamics},
     19006  pages = {109-120},
     19007  volume = {475},
     19008  chapter = {5},
     19009  publisher = {Elsevier},
     19010  author = {Manely, S. and Gillette, J.M. and Lippincott-Schwartz, J.}
     19011}
     19012@article{Luisier2007,
     19013  number = {3},
     19014  year = {2007},
     19015  title = {A New {SURE} Approach to Image Denoising:
     19016Interscale Orthonormal Wavelet Thresholding},
     19017  pages = {593-606},
     19018  journal = {IEEE Transactions on Image Processing},
     19019  volume = {16},
     19020  author = {Luisier, F. and Blu, T. and Unser, M.}
     19021}
     19022@article{Krizek2011,
     19023  number = {4},
     19024  year = {2011},
     19025  title = {Minimizing detection errors in single molecule localization microscopy},
     19026  pages = {3226-3235},
     19027  journal = {Optics Express},
     19028  volume = {19},
     19029  author = {Krizek, P. and Raska, I. and Hagen, G.M}
     19030}
     19031@article{Kaufmann2011a,
     19032  year = {2011},
     19033  title = {Imaging label-free intracellular structures by localisation microscopy},
     19034  pages = {348-352},
     19035  journal = {Micron},
     19036  volume = {42},
     19037  author = {Kaufmann, R. and {M\"uller}, P. and Hausmann, M. and Cremer, C.}
     19038}
     19039@article{Kaufmann2011,
     19040  number = {1},
     19041  year = {2011},
     19042  title = {Analysis of {Her2/neu} membrane protein clusters in different types of breast cancer cells using localization microscopy},
     19043  pages = {46-54},
     19044  journal = {Journal of Microscopy},
     19045  volume = {242},
     19046  author = {Kaufmann, R. and {M\"uller}, P. and Hildenbrand, G. and Hausmann, M. and Cremer, C.}
     19047}
     19048@article{Fujita2007,
     19049  year = {2007},
     19050  title = {High-Resolution Confocal Microscopy by Saturated Excitation of Fluorescence},
     19051  pages = {228105},
     19052  journal = {Physical Review Letters},
     19053  volume = {99},
     19054  author = {Fujita, K. and Kobayashi, M. and Kawano, S. and YTamanaka, M. and Kawata, S.}
     19055}
     19056@article{Fahrbach2010,
     19057  year = {2010},
     19058  title = {Microscopy with self-reconstructing beams},
     19059  note = {DOI: 10.1038/NPHOTON.2010.204},
     19060  journal = {Nature photonics},
     19061  author = {Fahrbach, F.O. and Simon, P. and Rohrbach, A.}
     19062}
     19063@article{Debarre2007,
     19064  number = {13},
     19065  year = {2007},
     19066  title = {Image based adaptive optics through optimisation of low spatial frequencies},
     19067  pages = {8176-8190},
     19068  journal = {Optics Express},
     19069  volume = {15},
     19070  author = {Debarre, D. and Booth, M.J. and Wilson, T.}
     19071}
     19072@article{Cox2004,
     19073  year = {2004},
     19074  title = {Practical Limits of Resolution in Confocal and Non-Linear Microscopy},
     19075  pages = {18-22},
     19076  journal = {MICROSCOPY RESEARCH AND TECHNIQUE},
     19077  volume = {63},
     19078  author = {Cox, G. and Sheppard, C.J.R.}
     19079}
     19080@article{Cox1982,
     19081  number = {5},
     19082  year = {1982},
     19083  title = {Improvement in resolution by nearly confocal microscopy},
     19084  pages = {778-781},
     19085  journal = {Applied Optics},
     19086  volume = {21},
     19087  author = {Cox, I.J. and Sheppard, C.J.R. and Wilson, T.}
     19088}
     19089@article{Dobrucki2007,
     19090  year = {2007},
     19091  title = {Scattering of Exciting Light by Live Cells in Fluorescence Confocal Imaging: Phototoxic Effects and Relevance for {FRAP} Studies},
     19092  pages = {1778-1786},
     19093  journal = {Biophysical Journal},
     19094  volume = {93},
     19095  author = {Dobrucki, J.W. and Feret, D. and Noatynska, A.}
     19096}
     19097@phdthesis{Wicker2010,
     19098  month = {October},
     19099  year = {2010},
     19100  title = {Increasing resolution and light efficiency
     19101in fluorescence microscopy},
     19102  address = {United Kingdom},
     19103  school = {King's College London},
     19104  author = {Wicker, K.}
     19105}
     19106@article{PoissonNoise,
     19107  number = {1},
     19108  year = {1965},
     19109  title = {Noise in Photoemission Current},
     19110  pages = {79-80},
     19111  journal = {Applied Optics},
     19112  volume = {4},
     19113  author = {Fried, D.L.}
     19114}
     19115@article{Kiel2007,
     19116  year = {2007},
     19117  title = {Direct Monitoring of Formation and Dissociation of Individual Metal Complexes by Single-Molecule Fluorescence Spectroscopy},
     19118  pages = {3363-3366},
     19119  journal = {Angewandte Chemie Interational Edition},
     19120  volume = {46},
     19121  author = {Kiel, A. and Kovacs, J. and Mokhir, A. and {Kr\"amer}, R. and Herten, D.-P.}
     19122}
     19123@article{Schwering2011,
     19124  year = {2011},
     19125  title = {Far-Field Nanoscopy with Reversible Chemical Reactions},
     19126  pages = {2940-2945},
     19127  journal = {Angewandte Chemie International Edition},
     19128  volume = {50},
     19129  author = {Schwering, M. and Kiel, A. and Kurz, A. and Lymperopoulos,K. and {Spr\"odefeld}, A. and {Kr\"amer}, R. and Herten, D.-P. }
     19130}
     19131@article{Rossow2010,
     19132  number = {11},
     19133  year = {2010},
     19134  title = {Raster image correlation spectroscopy in live cells},
     19135  pages = {1761-1773},
     19136  journal = {Nature Protocols},
     19137  volume = {5},
     19138  author = {Rossow, M.J. and Sasaki, J.M. and Digmann, M.A. and Gratton, E.}
     19139}
     19140@inproceedings{Knutsson1987,
     19141  month = {September},
     19142  year = {1987},
     19143  title = {A tensor representation of 3-D structure},
     19144  booktitle = {5th IEEE-ASSP and EURASIP Workshop on Multidimensional Signal Processing},
     19145  address = {Noorwijkerhoudt, Netherlands},
     19146  author = {Knutsson, H.}
     19147}
     19148@inproceedings{Serino2011,
     19149  series = {Lecture Notes in Computer Science 6688},
     19150  year = {2011},
     19151  title = {Using the Skeleton for 3D Object Decomposition},
     19152  booktitle = {Image Analysis},
     19153  pages = {447-456},
     19154  editor = {Heyden, A. and Kahl, F.},
     19155  address = {Heidelberg},
     19156  publisher = {Springer},
     19157  author = {Serino, L. and Sanniti di Baja, G. and Arcelli, C.}
     19158}
     19159@inproceedings{Schlager2011,
     19160  series = {Lecture Notes in Computer Science 6688},
     19161  year = {2011},
     19162  title = {Coherence Probe Microscopy Imaging and
     19163Analysis for Fiber-Reinforced Polymers},
     19164  booktitle = {Image Analysis},
     19165  pages = {424-434},
     19166  editor = {Heyden, A. and Kahl, F.},
     19167  address = {Heidelberg},
     19168  publisher = {Springer},
     19169  author = {Schlager1, V. and Schausberger, S.E. and Stifter, D. and Heise1, B.}
     19170}
     19171@inproceedings{Malmberg2011,
     19172  series = {Lecture Notes in Computer Science 6688},
     19173  year = {2011},
     19174  title = {Generalized Hard Constraints for Graph
     19175Segmentation},
     19176  booktitle = {Image Analysis},
     19177  pages = {36-47},
     19178  editor = {Heyden, A. and Kahl, F.},
     19179  address = {Heidelberg},
     19180  publisher = {Springer},
     19181  author = {Malmberg, F. and Strand, R. and {Nystr\"om}, I.}
     19182}
     19183@inproceedings{Larsson2011,
     19184  series = {Lecture Notes in Computer Science 6688},
     19185  year = {2011},
     19186  title = {Using Fourier Descriptors and Spatial Models
     19187for Traffic Sign Recognition},
     19188  booktitle = {Image Analysis},
     19189  pages = {238-249},
     19190  editor = {Heyden, A. and Kahl, F.},
     19191  address = {Heidelberg},
     19192  publisher = {Springer},
     19193  author = {Larsson, F. and Felsberg, M.}
     19194}
     19195@inproceedings{Landstrom2011,
     19196  series = {Lecture Notes in Computer Science 6688},
     19197  year = {2011},
     19198  title = {Image Reconstruction by Prioritized
     19199Incremental Normalized Convolution},
     19200  booktitle = {Image Analysis},
     19201  pages = {176-185},
     19202  editor = {Heyden, A. and Kahl, F.},
     19203  address = {Heidelberg},
     19204  publisher = {Springer},
     19205  author = {{Landstr\"om}, A. and Nellros, F. and Jonsson, H. and Thurley, M.}
     19206}
     19207@inproceedings{Knutsson2011,
     19208  series = {Lecture Notes in Computer Science 6688},
     19209  year = {2011},
     19210  title = {Representing Local Structure Using Tensors {II}},
     19211  booktitle = {Image Analysis},
     19212  pages = {545-556},
     19213  editor = {Heyden, A. and Kahl, F.},
     19214  address = {Heidelberg},
     19215  publisher = {Springer},
     19216  author = {Knutsson, H. and Westin, C.-F. and Andersson, M.}
     19217}
     19218@inproceedings{Josth2011,
     19219  series = {Lecture Notes in Computer Science 6688},
     19220  year = {2011},
     19221  title = {Real-Time Line Detection Using Accelerated
     19222High-Resolution Hough Transform},
     19223  booktitle = {Image Analysis},
     19224  pages = {784-793},
     19225  editor = {Heyden, A. and Kahl, F.},
     19226  address = {Heidelberg},
     19227  publisher = {Springer},
     19228  author = {Josth, R. and Dubska, M. and Herout, A. and Havel, J.}
     19229}
     19230@inproceedings{Eklund2011,
     19231  series = {Lecture Notes in Computer Science 6688},
     19232  year = {2011},
     19233  title = {Using the Local Phase of the Magnitude of the
     19234Local Structure Tensor for Image Registration},
     19235  booktitle = {Image Analysis},
     19236  pages = {414-423},
     19237  editor = {Heyden, A. and Kahl, F.},
     19238  address = {Heidelberg},
     19239  publisher = {Springer},
     19240  author = {Eklund, A. and Forsberg, D. and Andersson, M. and Knutsson, H.}
     19241}
     19242@inproceedings{Astrom2011,
     19243  series = {Lecture Notes in Computer Science 6688},
     19244  year = {2011},
     19245  title = {Color Persistent Anisotropic Diffusion of Images},
     19246  booktitle = {Image Analysis},
     19247  pages = {262-272},
     19248  editor = {Heyden, A. and Kahl, F.},
     19249  address = {Heidelberg},
     19250  publisher = {Springer},
     19251  author = {{\AAstr\"om}, F. and Felsberg, M. and Lenz, R.}
     19252}
     19253@article{Unser2011,
     19254  number = {11},
     19255  year = {2011},
     19256  title = {Multiresolution Monogenic Signal Analysis Using
     19257the {Riesz-Laplace} Wavelet Transform},
     19258  pages = {2402-2418},
     19259  journal = {IEEE TRANSACTIONS ON IMAGE PROCESSING},
     19260  volume = {18},
     19261  author = {Unser, M. and Sage, D. and Ville, D. van de}
     19262}
     19263@article{Frank1976,
     19264  year = {1975},
     19265  title = {Signal to noise ratio of electron micrographs obtained by cross correlation},
     19266  pages = {376-379},
     19267  journal = {Nature},
     19268  volume = {256},
     19269  author = {Frank, J. and Al-Ali, L.}
     19270}
     19271@article{Patra2005,
     19272  year = {2005},
     19273  title = {Defocused imaging of quantum-dot angular distribution of radiation},
     19274  pages = {101103},
     19275  journal = {Applied Physics Letters},
     19276  volume = {87},
     19277  author = {Patra, D. and Gergor, I. and Enderlein, J.}
     19278}
     19279@article{Toprak2006,
     19280  number = {17},
     19281  year = {2006},
     19282  title = {Defocused orientation and position imaging
     19283{(DOPI)} of myosin {V}},
     19284  pages = {6495-6499},
     19285  journal = {Proceedings of the National Academy of Sciences USA},
     19286  volume = {103},
     19287  author = {Toprak, E. and Enderlein, J. and Syed, S. and McKinney, S.A. and Petschek, R.G. and Ha, T. and Goldman, Y.E. and Selvin, P.R.}
     19288}
     19289@article{Geissbuehler2011,
     19290  number = {3},
     19291  year = {2011},
     19292  title = {Comparison between {SOFI} and {STORM}},
     19293  pages = {408-420},
     19294  journal = {BIOMEDICAL OPTICS EXPRESS},
     19295  volume = {2},
     19296  author = {Geissbuehler, S. and Dellagiacoma, C. and Lasser, T.}
     19297}
     19298@article{Enderlein2005,
     19299  year = {2005},
     19300  title = {Performance of Fluorescence Correlation
     19301Spectroscopy for Measuring Diffusion and
     19302Concentration},
     19303  pages = {2324-2336},
     19304  journal = {ChemPhysChem},
     19305  volume = {6},
     19306  author = {Enderlein, J. and Gregor, I. and Patra, D. and Dertinger, T. and Kaupp, U.B.}
     19307}
     19308@article{Dertinger2007,
     19309  year = {2007},
     19310  title = {Two-Focus Fluorescence Correlation
     19311Spectroscopy: A New Tool for Accurate and
     19312Absolute Diffusion Measurements},
     19313  pages = {433-443},
     19314  journal = {ChemPhysChem},
     19315  volume = {8},
     19316  author = {Dertinger, T. and Pacheco, V. and Hocht, I. van der and Hartmann, R. and Gregor, I. and Enderlein, J.}
     19317}
     19318@article{Pusey2011,
     19319  year = {2011},
     19320  title = {Brownian Motion Goes Ballistic},
     19321  pages = {802-803},
     19322  journal = {Science},
     19323  volume = {332},
     19324  author = {Pusey, P.N.}
     19325}
     19326@article{Maye2010,
     19327  year = {2010},
     19328  title = {Switching binary states of nanoparticle
     19329superlattices and dimer clusters by {DNA} strands},
     19330  pages = {116},
     19331  journal = {Nature Nanotechnology},
     19332  volume = {5},
     19333  author = {Maye, M.M. and Kumara, M.T. and Nykypanchuk, D. and Sherman, W.B. and Gang, O.}
     19334}
     19335@article{Leunissen2011,
     19336  year = {2011},
     19337  title = {Numerical study of {DNA}-functionalized microparticles and nanoparticles: Explicit pair potentials and their implications for phase behavior},
     19338  pages = {084702},
     19339  journal = {Journal of Chemical Physics},
     19340  volume = {134},
     19341  author = {Leunissen, M.E. and Frenkel, D.}
     19342}
     19343@article{Chan2001,
     19344  number = {2},
     19345  year = {2001},
     19346  title = {Active Contours Without Edges},
     19347  pages = {266-277},
     19348  journal = {IEEE TRANSACTIONS ON IMAGE PROCESSING},
     19349  volume = {10},
     19350  author = {Chan, T.T. and Vese, L.A.}
     19351}
     19352@article{Yen1995,
     19353  number = {3},
     19354  year = {1995},
     19355  title = {A new criterion for automatic multilevel thresholding},
     19356  pages = {370-378},
     19357  journal = {IEEE Transactions on Image Processing},
     19358  volume = {4},
     19359  author = {Yen, J.-C. and Chang, F.-J. and Chang, S.}
     19360}
     19361@article{Kapur1985,
     19362  number = {3},
     19363  year = {1985},
     19364  title = {A new method for gray-level picture thresholding using the entropy of the histogram},
     19365  pages = {273-285},
     19366  journal = {Computer Vision, Graphics, and Image Processing},
     19367  volume = {29},
     19368  author = {Kapur, J.N. and Sahdoo, P.K. and Wong, A.K.C.}
     19369}
     19370@article{Sezgin2004,
     19371  number = {1},
     19372  year = {2004},
     19373  title = {Survey over image thresholding techniques
     19374and quantitative performance evaluation},
     19375  pages = {146-165},
     19376  journal = {Journal of Electronic Imaging},
     19377  volume = {13},
     19378  author = {Sezgin, M. and Sankur, B.}
     19379}
     19380@article{Kittler1986,
     19381  number = {1},
     19382  year = {1986},
     19383  title = {Minimum error thresholding},
     19384  pages = {41-47},
     19385  journal = {Pattern Recognition},
     19386  volume = {19},
     19387  author = {Kittler, J. and Illingworth, J.}
     19388}
     19389@article{Otsu1979,
     19390  year = {1979},
     19391  title = {A threshold selection method from gray-level histograms},
     19392  pages = {62-66},
     19393  journal = {IEEE Transactions on Systems, Man and Cybernetics },
     19394  volume = {9},
     19395  author = {Otsu, N.}
     19396}
     19397@article{Zeskind2007,
     19398  number = {7},
     19399  year = {2007},
     19400  title = {Nucleic acid and protein mass mapping by live-cell deep-ultraviolet microscopy},
     19401  pages = {567-569},
     19402  journal = {Nature Methos},
     19403  volume = {4},
     19404  author = {Zeskind, B.J. and Jordan, C.D. and Timp, W. and Trapani, L. and Waller, G. and Horodincu, V. and Ehrlich, D.J. and Matsudaira, P.}
     19405}
     19406@article{Dorenbos2008,
     19407  year = {2008},
     19408  title = {Low noise superconducting single photon detectors on silicon},
     19409  pages = {131101},
     19410  journal = {Applied Physics Letters},
     19411  volume = {93},
     19412  author = {Dorenbos, S.N. and Reiger, E.M. and Perinetti, U. and Zwiller, V. and Zijlstra, T. and Klapwijk, T.M.}
     19413}
     19414@article{Goltsman2001,
     19415  number = {6},
     19416  year = {2001},
     19417  title = {Picosecond superconduction single-photon optical detector},
     19418  pages = {705-707},
     19419  journal = {Applied Physics Letters},
     19420  volume = {79},
     19421  author = {Gol'tsman, G.N. and Okunev, O. and Chulkova, G. and Lipatov, A. and Semenov, A. and Smirnov, K. and Voronov, B. and Dzardanov, A. and Williams, C. and Sobolewski, R.}
     19422}
     19423@article{Shore2011,
     19424  number = {2},
     19425  year = {2011},
     19426  title = {Optimal acquisition scheme for subwavelength localization microscopy of bleachable fluorophores},
     19427  pages = {289-291},
     19428  journal = {Optics Letters},
     19429  volume = {36},
     19430  author = {Shore, E. and Small, A.}
     19431}
     19432@article{Stallinga2011,
     19433  year = {2011},
     19434  title = {Optical trapping at low numerical aperture},
     19435  pages = {11027},
     19436  journal = {Journal of the European Optical Society},
     19437  volume = {6},
     19438  author = {Stallinga, S.}
     19439}
     19440@article{Ulbrich2007,
     19441  number = {4},
     19442  year = {2007},
     19443  title = {Subunit counting in membrane-bound proteins},
     19444  pages = {319-321},
     19445  journal = {Nature Methods},
     19446  volume = {4},
     19447  author = {Ulbrich, M.H. and Isacoff, E.Y.}
     19448}
     19449@article{Ulbrich2007-S3,
     19450  number = {4},
     19451  year = {2007},
     19452  title = {Subunit counting in membrane-bound proteins},
     19453  pages = {319-321},
     19454  note = {Supplementary Methods},
     19455  journal = {Nature Methods},
     19456  volume = {4},
     19457  author = {Ulbrich, M.H. and Isacoff, E.Y.}
     19458}
     19459@article{Grunwald2011,
     19460  year = {2011},
     19461  title = {Nuclear export dynamics of {RNA}-protein complexes},
     19462  pages = {333-341},
     19463  journal = {Nature},
     19464  volume = {475},
     19465  author = {{Gr\"unwald}, D. and Singer, R.H. and Rout, M.}
     19466}
     19467@inbook{Luengo2011,
     19468  series = {Biological and Medical Physics, Biomedical Engineering Series},
     19469  year = {2011},
     19470  title = {Medical Image Processing: Techniques and Applications},
     19471  note = {ISBN 978-1-4419-9769-2},
     19472  editor = {Dougherty, G.},
     19473  chapter = {Rapid prototyping of image analysis applications},
     19474  publisher = {Springer},
     19475  author = {Luengo Hendriks, C. L. and Malm, P. and  Bengtsson, E.}
     19476}
     19477@article{Knowles2011,
     19478  number = {36},
     19479  year = {2011},
     19480  title = {Observation of spatial propagation of amyloid
     19481assembly from single nuclei},
     19482  pages = {14746-14751},
     19483  journal = {Proceedings of the National Academy of Science USA},
     19484  volume = {108},
     19485  author = {Knowles, T.P.J. and White, D.A. and Abate, A.A. and Agresti, J.J. and Cohen, S.I.A. and Sperling, R.A. and Genst, E.J. de and Dobson, C.M. and Weitz, D.A.}
     19486}
     19487@article{Kampmannetal2011,
     19488  number = {6},
     19489  year = {2011},
     19490  title = {Mapping the orientation of nuclear pore proteins in living cells with polarized fluorescence microscopy},
     19491  pages = {643-650},
     19492  journal = {Nature structural & molecular biology},
     19493  volume = {18},
     19494  author = {Kampmann, M. and Atkinson, C.E. and Mattheyses, A.L. and Simon, S.M.}
     19495}
     19496@article{Nature08-2011,
     19497  year = {2011},
     19498  title = {Suppression of the coffee-ring effect by
     19499shape-dependent capillary interactions},
     19500  pages = {308-311},
     19501  journal = {Nature},
     19502  volume = {476},
     19503  author = {Yunker, P.J. and Still, T. and Lohr, M.A. Yodh, A.G.}
     19504}
     19505@article{Park2004,
     19506  number = {3},
     19507  year = {2004},
     19508  title = {Nanometre localization of single {ReAsH} molecules},
     19509  pages = {199-205},
     19510  journal = {Journal of Microscopy},
     19511  volume = {216},
     19512  author = {Park, H. and Hanson, T. and Duff, S.R. and Selvin, P.R.}
     19513}
     19514@article{Martin2005,
     19515  number = {10},
     19516  year = {2005},
     19517  title = {Mammalian cell-based optimization of the biarsenical binding tetracysteine motif for improved fluorescence and affinity},
     19518  pages = {1308-1314},
     19519  journal = {Nature biotechnology},
     19520  volume = {23},
     19521  author = {Martin, B.R. and Giepmanns, B.N.G. and Adams, S.R. and Tsien, R.Y.}
     19522}
     19523@article{Kampmann2009,
     19524  number = {7},
     19525  year = {2009},
     19526  title = {Three-dimensional structure and flexibility of a membrane-coating module of the nuclear pore complex},
     19527  pages = {782-789},
     19528  journal = {Nature structural & molecular biology},
     19529  volume = {16},
     19530  author = {Kampmann, M. and Blobel, G.}
     19531}
     19532@phdthesis{Hein2009,
     19533  year = {2009},
     19534  title = {Live Cell {STED} Microscopy
     19535Using Genetically Encoded Markers},
     19536  address = {{G\"ottingen}, Germany},
     19537  school = {Georg-August-{Universit\"at} {G\"ottingen} },
     19538  author = {Hein, B.}
     19539}
     19540@article{Grunwald2010,
     19541  year = {2010},
     19542  title = {In vivo imaging of labelled endogenous b-actin
     19543{mRNA} during nucleocytoplasmic transport},
     19544  pages = {604-609},
     19545  journal = {Nature},
     19546  volume = {467},
     19547  author = {{Gr\"unwald}, D. and Singer, R.H.}
     19548}
     19549@article{Delber2008,
     19550  year = {2008},
     19551  title = {A Fence-like Coat for the Nuclear Pore Membrane},
     19552  pages = {815-826},
     19553  journal = {Molecular Cell},
     19554  volume = {32},
     19555  author = {Delber, E.W. and Ma, Y. and Seo, H.-S. and Hsia, K.-C. and Noriega, T.R. and Blobel, G. and Hoelz, A.}
     19556}
     19557@article{Churchman2005,
     19558  number = {5},
     19559  year = {2005},
     19560  title = {Single molecule high-resolution colocalization of {Cy3}
     19561and {Cy5} attached to macromolecules measures
     19562intramolecular distances through time},
     19563  pages = {1419-1423},
     19564  journal = {Proceedings of the National Academy of Science},
     19565  volume = {102},
     19566  author = {Churchman, L.S. and {\"Oktem}, Z. and Rock, R.S. and Dawson, J.F. and Spudich, J.A.}
     19567}
     19568@article{Brohawn2009,
     19569  year = {2008},
     19570  title = {Structural Evidence for Common Ancestry of the Nuclear Pore Complex and Vesicle Coats},
     19571  pages = {1369-1373},
     19572  journal = {Science},
     19573  volume = {322},
     19574  author = {Brohawn, S.G. and Leksa, N.C. and Spear, E.D. and Rajashankar, K.R. and Schwartz, T.U.}
     19575}
     19576@article{Beck2007,
     19577  year = {2007},
     19578  title = {Snapshots of nuclear pore complexes in action
     19579captured by cryo-electron tomography},
     19580  pages = {611-615},
     19581  journal = {Nature},
     19582  volume = {449},
     19583  author = {Beck, M. and Lucic, V. and {F\"orster}, F. and Baumeister, W. and Medalia, O.}
     19584}
     19585@article{Alber2007,
     19586  year = {2007},
     19587  title = {The molecular architecture of the nuclear
     19588pore complex},
     19589  pages = {695-701},
     19590  journal = {Nature},
     19591  volume = {450},
     19592  author = {Alber, F. and Dokudovskaya, S. and Veenhoff, L.M. and Zhang, W. and Kipper, J. nad Devos, D. and Suprapto, A. and Karni-Schmidt, O. and Williams, R. and Chait, B.T. and Sali, A. and Rout, M.P.}
     19593}
     19594@article{Varbioiu2006,
     19595  number = {466-469},
     19596  year = {2006},
     19597  title = {Structural insight into yeast septin organizaiton from polarized fluorescent micrsocopy},
     19598  journal = {Nature},
     19599  volume = {443},
     19600  author = {Varabioiu, A.M. and Mitchison, T.J.}
     19601}
     19602@article{Mattheyses2010,
     19603  year = {2010},
     19604  title = {Fluorescence anisotropy reveals order and disorder of protein domains in the nuclear pore complex},
     19605  pages = {1706-1717},
     19606  journal = {Biophysical Journal},
     19607  volume = {99},
     19608  author = {Mattheyes, A.L. and Kampmann, M. and Aktinson, C.E. and Simon, S.M.}
     19609}
     19610@article{Voortman2012,
     19611  year = {2012},
     19612  title = {Fast, spatially varying {CTF} correction in {TEM}},
     19613  pages = {26-34},
     19614  journal = {Ultramicroscopy},
     19615  volume = {118},
     19616  author = {Voortman, L.M. and Franken, E.M. and Vliet, L.J. van and Rieger, B.}
     19617}
     19618@article{Hell2003a,
     19619  year = {2003},
     19620  title = {Imaging and writing at the nanoscale with focused visible light through saturable optical transitions},
     19621  pages = {859-860},
     19622  journal = {Applied Physics A},
     19623  volume = {77},
     19624  author = {Hell, S.W. and Jakobs, S. and Kastrup, L.}
     19625}
     19626@article{Huang2011,
     19627  number = {5},
     19628  year = {2011},
     19629  title = {Simultaneous multiple-emitter fitting for single molecule super-resolution imaging},
     19630  pages = {1377-1393},
     19631  journal = {Biomedical Optics Express },
     19632  volume = {2},
     19633  author = {Huang, F. and  Schwartz, S.L. and  Byars, J.M. and Lidke, K.A. }
     19634}
     19635@article{Bader2011,
     19636  year = {2011},
     19637  title = {Homo-FRET Imaging as a Tool to Quantify Protein and
     19638Lipid Clustering},
     19639  pages = {475-483},
     19640  journal = {ChemPhysChem},
     19641  volume = {12},
     19642  author = {Bader,A.N. and  Hoetzl, S. and Hofman, E.G. and   Voortman, J. and Bergen en Henegouwen, 
     19643P.M.P. van and  Meer, G. van and Gerritsen, H.C.}
     19644}
     19645@article{Bader2009,
     19646  year = {2009},
     19647  title = {Homo-FRET Imaging Enables Quantification of Protein Cluster Sizes
     19648with Subcellular Resolution},
     19649  pages = {2613-2622},
     19650  journal = {Biophysical Journal},
     19651  volume = {97},
     19652  author = {Bader,A.N. and Hofmann, E.G. and Voortman, J. and Bergen en Henegouwen, P.M.P. van and Gerritsen, H.C.}
     19653}
     19654@article{Bader2007,
     19655  number = {11},
     19656  year = {2007},
     19657  title = {Imaging of protein cluster sizes by means of
     19658confocal time-gated fluorescence anisotropy
     19659microscopy},
     19660  pages = {6934-6945},
     19661  journal = {Optics Express},
     19662  volume = {15},
     19663  author = {Bader, A.N. and  Hofman,  E.G. and  Bergen en Henegouwen, P.M.P. van and
     19664 Gerritsen,H.C.}
     19665}
     19666@article{Dange208,
     19667  number = {1},
     19668  year = {2008},
     19669  title = {Autonomy and robustness of thranslocation through the nuclear pore complex: a single molecule study},
     19670  pages = {77-86},
     19671  journal = {Journal of Cell Biology},
     19672  volume = {183},
     19673  author = {Dange, T. and {Gr\"unwald}, D. and {Gr\"unwald}, A. and Peters, R. and Kubitscheck, U.}
     19674}
     19675@article{Kubitscheck2005,
     19676  number = {2},
     19677  year = {2005},
     19678  title = {Nuclear transport of single molecules: dwell times at the nuclear pore complex},
     19679  pages = {233-243},
     19680  journal = {Journal of Cell Biology},
     19681  volume = {168},
     19682  author = {Kubitscheck, U. and {Gr\"unwald}, D. and Hoekstra, A. and Rohleder, D. and Kues, T. and Siebrasse, J.P. and Peters, R.}
     19683}
     19684@article{Arhel2006,
     19685  number = {10},
     19686  year = {2006},
     19687  title = {Quantitative four-dimensional tracking of cytoplasmic and nuclear {HIV-1} complexes},
     19688  pages = {817-824},
     19689  journal = {Nature methods},
     19690  volume = {3},
     19691  author = {Arhel, N. and Genovesio, A. and Kim, K.A. and Miko, S. and Perret, E. and Olvio-Marin, J.C. and Shorte, S. and Charneau, P.}
     19692}
     19693@article{Rout2000,
     19694  year = {2000},
     19695  title = {The yeast nuclear pore complex: Composition, architecture, and transport mechanism},
     19696  pages = {635-651},
     19697  journal = {Journal of Cell Biology},
     19698  volume = {148},
     19699  author = {Rout,M.P. and Aitchison, J.D. and Suprapto, A. and Hjertaas, K. and Zhao, Y.M. and  Chait, B.T.}
     19700}
     19701@article{Alber2007b,
     19702  year = {2007},
     19703  title = {Determining the architectures of
     19704macromolecular assemblies},
     19705  pages = {683-694},
     19706  journal = {Nature},
     19707  volume = {450},
     19708  author = {Alber, F. and Dokudovskaya2, S. and Veenhoff, L.M. and  Zhang, W. and  Kipper, J. and
     19709Devos, D. and Suprapto, A. and Karni-Schmidt, O. and  Williams, R. and  Chait, B.T. and
     19710Rout, M.P. and Sali,A.}
     19711}
     19712@article{Brohawn2009b,
     19713  number = {11},
     19714  year = {2009},
     19715  title = {Molecular architecture of the {Nup84-Nup145C-Sec13} edge element in the nuclear pore complex lattice},
     19716  pages = {1173-1178},
     19717  journal = {Nature structural & molecular biology},
     19718  volume = {16},
     19719  author = {Brohawn, S.G. and  Schwartz, T.U.}
     19720}
     19721@article{Lewis2007,
     19722  year = {2007},
     19723  title = {A nuclear envelope protein linking nuclear pore basket assembly, {SUMO} protease regulation, and {mRNA} surveillance},
     19724  pages = {813-827},
     19725  journal = {Journal of Cell Biology},
     19726  volume = {178},
     19727  author = {Lewis, A. and Felberbaum, R. and Hochstrasser, M.}
     19728}
     19729@article{Jovanovic2008,
     19730  year = {2008},
     19731  title = {Artificial nanopores that mimic the transport selectivity of the nuclear pore complex },
     19732  pages = {1023-1027},
     19733  journal = {Nature},
     19734  volume = {457},
     19735  author = {Jovanovic-Talisman, T. and Tetenbaum-Novatt, J. and McKenney, A.S. and Zilman, A. and Peters, R. and Rout, M.P. and Chait, B.T.}
     19736}
     19737@article{Kim2008,
     19738  year = {2008},
     19739  title = {A structure-permeability relationship of ultrathin nanoporous silicon membrane: a comparison with the nuclear envelope},
     19740  pages = {4230-4231},
     19741  journal = {Journal of the American Chemical Society},
     19742  volume = {130},
     19743  author = {Kim, E. and Xiong, H. and Striemer, C.C. and Fang, D.Z. and Fauchet, P.M. and McGrath, J.L. and Amemiya, S.}
     19744}
     19745@article{Debler2008,
     19746  year = {2008},
     19747  title = {A fence-like coat for the nuclear pore membrane},
     19748  pages = {815-826},
     19749  journal = {Molecular Cell},
     19750  volume = {32},
     19751  author = {Debler, E.W. and Ma, Y. and Seo, H.S. and Hsia, K.C. and Noriega, T.R. and Blobel, G. and Hoelz, A.}
     19752}
     19753@article{Rout2007,
     19754  year = {2007},
     19755  title = {Virtual gating and nuclear transport: the hole picture},
     19756  pages = {622-628},
     19757  journal = {Trends in Cell Biology},
     19758  volume = {13},
     19759  author = {Rout, M.P. and Aitchison, J.D. and Magnasco, M.O. and Chait, B.T.}
     19760}
     19761@article{Qu2004,
     19762  number = {31},
     19763  year = {2004},
     19764  title = {Nanometer-localized multiple single-molecule fluorescence microscopy},
     19765  pages = {11298-11303},
     19766  journal = {Proceedings of the National Academy of Science USA},
     19767  volume = {101},
     19768  author = {Qu, X. and Wu, D. and Mets, L. and Scherer, N.F.}
     19769}
     19770@article{Hsia2007,
     19771  year = {2007},
     19772  title = {Architecture of a coat for the nuclear pore membrane},
     19773  pages = {1313-1326},
     19774  journal = {Cell},
     19775  volume = {131},
     19776  author = {Hsia, K. C. and Savropoulos, P. and Blobel, G. and Hoelz, A.}
     19777}
     19778@article{Daigle2001,
     19779  year = {2001},
     19780  title = {Nuclear pore complexes from immobile networks and have a very low turnover in mammalian cells},
     19781  pages = {71-84},
     19782  journal = {Journal of Cell Biology},
     19783  volume = {154},
     19784  author = {Daigle, N. and Beaudouin, J. and Hartnell, L. and Imreh, G. and Hallberg, E. and Lippincott-Schwartz, J. and Ellenberg, J.}
     19785}
     19786@article{Roberti2011,
     19787  year = {2011},
     19788  title = {Confocal fluorescence anisotropy and FRAP imaging of alpha-synuclein amyloid aggregates in living cells},
     19789  pages = {e23338},
     19790  journal = {PLoS ONE},
     19791  volume = {6},
     19792  author = {Roberti, M.J. and  Jovin, T.M. and Jares-Erijman, E.}
     19793}
     19794@article{Roberti2007,
     19795  year = {2007},
     19796  title = {Fluorescence imaging of amyloid formation in living cells by a functional, tetracysteine-tagged alpha-synuclein},
     19797  pages = {345-351},
     19798  journal = {Nature Methods},
     19799  volume = {4},
     19800  author = {Roberti, M.J. and Bertoncini, C.W. and  Klement, R. and Jares-Erijman, E.A. and Jovin, T.M.}
     19801}
     19802@article{Dudkina2011,
     19803  number = {37},
     19804  year = {2011},
     19805  title = {Interaction of complexes {I, III}, and {IV} within
     19806the bovine respirasome by single particle
     19807cryoelectron tomography},
     19808  pages = {15196-15200},
     19809  journal = {Proceedings of the National Academy of Science USA},
     19810  volume = {108},
     19811  author = {Dudkina, N. and Kudryashev, M. and Stahlberg, H. and Boekema, E.J.}
     19812}
     19813@article{Rudnaya2011,
     19814  year = {2011},
     19815  title = {Defocus and twofold astigmatism correction in {HAADF-STEM}},
     19816  pages = {1043-1054},
     19817  journal = {Ultramicroscopy},
     19818  volume = {111},
     19819  author = {Rudnaya, M.E. and Broek, W. van den and Doornbos, R.M.P. and Mattheij, R.M.M. and Maubach, J.M.L.}
     19820}
     19821@article{Verdoold2011,
     19822  year = {2011},
     19823  title = {Femtomolar {DNA} detection by parallel colorimetric darkfield microscopy of functionalized gold nanoparticles},
     19824  pages = {77-81},
     19825  journal = {Biosensors and Bioelectronics},
     19826  volume = {27},
     19827  author = {Verdoold, R. and Gill, R. and Ungureanu, F. and Molenaar, R. and Kooyman, R.P.H.}
     19828}
     19829@article{Putten2011,
     19830  year = {2011},
     19831  title = {Scattering Lens Resolves Sub-100 nm Structures with Visible Light},
     19832  pages = {193905},
     19833  journal = {Physical Review Letters},
     19834  volume = {106},
     19835  author = {Putten, E.G. van and Akbulut, D. and Bertolotti, J. and Vos, W.L. and Lagendijk, A. and Mosk, A.P.}
     19836}
     19837@article{Foreman2011,
     19838  year = {2011},
     19839  title = {Fundamental limits in single-molecule orientation measurements},
     19840  pages = {093013},
     19841  journal = {New Journal of Physics},
     19842  volume = {13},
     19843  author = {Foreman, M.R. and {T\"or\"ok}, P.}
     19844}
     19845@article{Kendrick1994,
     19846  number = {27},
     19847  year = {1994},
     19848  title = {Phase-diversity wave-front sensor for imaging systems},
     19849  pages = {6533-6546},
     19850  journal = {Applied Optics},
     19851  volume = {33},
     19852  author = {Kendrick, R.L. and Acton, D.S. and Duncan, A.L.}
     19853}
     19854@article{Olivier2009,
     19855  number = {20},
     19856  year = {1009},
     19857  title = {Dynamic aberration correction for multiharmonic microscopy},
     19858  pages = {3145-3147},
     19859  journal = {Optics Letters},
     19860  volume = {34},
     19861  author = {Olivier, N. and Debarre, D. and Beaurepaire, E.}
     19862}
     19863@article{Coene1991,
     19864  year = {1991},
     19865  title = {Improved methods for the determination of the spherical aberration coefficient in high-resolution electron microscopy from micrographs of an amorphous object},
     19866  pages = {225-233},
     19867  journal = {Ultramicroscopy},
     19868  volume = {38},
     19869  author = {Coene, W.M.J. and Denteneer, T.J.J.}
     19870}
     19871@article{Saxton2000,
     19872  year = {2000},
     19873  title = {A new way of measuring microscope aberrations},
     19874  pages = {41-45},
     19875  journal = {Ultramicroscopy},
     19876  volume = {81},
     19877  author = {Saxton, W.O.}
     19878}
     19879@article{Steinecker2000,
     19880  year = {2000},
     19881  title = {Measurement of lens aberrations by means of image
     19882displacements in beam-tilt series},
     19883  pages = {149-161},
     19884  journal = {Ultramicroscopy},
     19885  volume = {81},
     19886  author = {Steinecker, A. and Mader, W.}
     19887}
     19888@phdthesis{Brinkers2011,
     19889  month = {October},
     19890  year = {2011},
     19891  title = {All that glitters is gold: },
     19892  address = {Delft, The Netherlands},
     19893  school = {Delft University of Technology},
     19894  author = {Brinkers, S.}
     19895}
     19896@article{Thust1992,
     19897  year = {1992},
     19898  title = {Quantitative high-speed matching of high-resolution electron microscopy images},
     19899  pages = {23-45},
     19900  journal = {Ultramicroscopy},
     19901  volume = {45},
     19902  author = {Thust, A. and Urban, K.}
     19903}
     19904@article{Holden2011,
     19905  number = {4},
     19906  year = {2011},
     19907  title = {DAOSTORM: an algorithm for high-density
     19908super-resolution microscopy},
     19909  pages = {279-280},
     19910  journal = {Nature Methods},
     19911  volume = {8},
     19912  author = {Holden, S.J. and Uphoff, S. and Kapanidis, A.N.}
     19913}
     19914@article{Tejada2011,
     19915  year = {2011},
     19916  title = {The role of {Poisson's} binomial distribution in the analysis of {TEM} images},
     19917  pages = {1553-1556},
     19918  journal = {Ultramicroscopy},
     19919  volume = {111},
     19920  author = {Tejada, A. and Dekker, A.J. den}
     19921}
     19922@article{Nejadasl2011,
     19923  year = {2011},
     19924  title = {Defocus estimationfromstroboscopiccryo-electronmicroscopydata},
     19925  pages = {1592-1598},
     19926  journal = {Ultramicroscopy},
     19927  volume = {111},
     19928  author = {Nejadasl, F. Karimi and Karuppasamy, M. and Koster, A.J. and Ravelli, R.B.G.}
     19929}
     19930@article{Barton2011,
     19931  year = {2011},
     19932  title = {In-focus electron microscopy of frozen-hydrated biological samples with a
     19933Boersch phase plate},
     19934  pages = {1696-1705},
     19935  journal = {Ultramicroscopy},
     19936  volume = {111},
     19937  author = {Barton, B. and Rhinow, D. and Walter, A. and {Schr\"oder}, R. and Benner, G. and Majorovits, E. and Matijevic, M.}
     19938}
     19939@article{Adelson1992,
     19940  number = {2},
     19941  year = {1992},
     19942  title = {Single lens stereo with a plenoptic camera},
     19943  pages = {99-106},
     19944  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     19945  volume = {14},
     19946  author = {Adelson, E.H. and Wang, J.Y.A.}
     19947}
     19948@article{Deschout2012,
     19949  number = {1},
     19950  year = {2012},
     19951  title = {The influence of movement on the localization precision of sub-resolution particles in fluorescence microscopy},
     19952  pages = {97-109},
     19953  journal = {Journal of Biophotonics},
     19954  volume = {5},
     19955  author = {Deschout, H. and Neyts, K. and Breaeckmans, K.}
     19956}
     19957@article{Zhou2011,
     19958  number = {12},
     19959  year = {2011},
     19960  title = {Computational Cameras: Convergence of Optics and Processing},
     19961  pages = {3322-3340},
     19962  journal = {IEEE Transactions on Image Processing},
     19963  volume = {20},
     19964  author = {Zhou, C. and Nayar, S.K.}
     19965}
     19966@misc{patentappPAM,
     19967  month = {29 Septemeber},
     19968  year = {2011},
     19969  title = {Optical Modulator device and spatio-temporally light modulated imaging system},
     19970  howpublished = {WO 2011/116904},
     19971  author = {Jovin, T.M. and Caarls, W. and Vries, A. de}
     19972}
     19973@article{Piestun2010,
     19974  number = {19},
     19975  month = {October},
     19976  year = {2010},
     19977  title = {Performance limits on three-dimensional particle
     19978localization in photon-limited microscopy},
     19979  pages = {3306-3308},
     19980  journal = {{Optics letters}},
     19981  volume = {35},
     19982  author = {Grover, G. and Pavani, S.R.P. and Piestun, R.}
     19983}
     19984@article{Schonle2008,
     19985  number = {25},
     19986  month = {December},
     19987  year = {2008},
     19988  title = {Isotropic 3D Nanoscopy based on single
     19989emitter switching},
     19990  pages = {20774-20788},
     19991  journal = {{Optics express}},
     19992  volume = {16},
     19993  author = {Middendorff, C.v. and Egner, C.G. and Hell, S.W. and {Sch\"onle}, A.}
     19994}
     19995@article{Moerner2010,
     19996  number = {16},
     19997  month = {October},
     19998  year = {2010},
     19999  title = {Three-dimensional localization precision of the double-helix point spread function versus astigmatism and biplane},
     20000  journal = {Applied Physics Letters},
     20001  volume = {97},
     20002  author = {Badieirostami, M. and Lew, M.D. and Thompson, M.A. and Moerner, W.E.}
     20003}
     20004@inproceedings{DeBeule2011,
     20005  year = {2011},
     20006  title = {Generation-3 programmable array microscope {(PAM)} with digital micro-mirror device {(DMD)}},
     20007  booktitle = {SPIE Proceeding Conference 7932 Session 4},
     20008  pages = {7932-15},
     20009  author = {Beule, P.A.A. de and Vried, A.H.B. de and Arndt-Jovin, D.J. and Jovin, T.M.}
     20010}
     20011@article{Greenaway2011,
     20012  year = {2011},
     20013  title = {Nanometric depth resolution from multi-focal images in microscopy},
     20014  pages = {942-951},
     20015  journal = {Journal of the royal society},
     20016  volume = {8},
     20017  author = {Dalgarno, H.I.C. and Dalgarno, P.A. and Dada, A.C. and Towers, C.E. and Gibson, G.J. and Parton, R.M. and Davis, I. and Warburton R.J. and Greenaway, A.H.}
     20018}
     20019@article{Cherny2010,
     20020  year = {2010},
     20021  title = {Stoichiometry of a regulatory splicing complex
     20022revealed by single-molecule analyses},
     20023  journal = {The EMBO Journal},
     20024  author = {Cherny, D.I. and Gooding, C. and Eperon, G.E. and Coelho, M.B. and Bagshaw, C.R. and Smith, C.W.J. and Eperon, I.C. }
     20025}
     20026@article{Xu2012,
     20027  number = {2},
     20028  year = {2012},
     20029  title = {Dual-objective {STORM} reveals three-dimensional filament organization in the actin cytoskeleton},
     20030  pages = {185-190},
     20031  journal = {Nature Methods},
     20032  volume = {9},
     20033  author = {Xu, K. and Babcock, H.P. and Zhuang, X.}
     20034}
     20035@article{Cox2012,
     20036  number = {2},
     20037  year = {2012},
     20038  title = {Bayesian localization microscopy reveals nanoscale
     20039podosome dynamics},
     20040  pages = {195-200},
     20041  journal = {Nature Methods},
     20042  volume = {9},
     20043  author = {Cox, S. and Rosten, E. and Monypenny, J. and Jovanoivc-Talisman, T. and Burnette, D.T. and Lippincott-Schwartz, J. and Jones, G.E. and Heintzmann, R.}
     20044}
     20045@article{Stallinga2012,
     20046  number = {6},
     20047  year = {2012},
     20048  title = {Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model},
     20049  pages = {5896-5921},
     20050  journal = {Optics Express},
     20051  volume = {20},
     20052  author = {Stallinga, S. and Rieger, B.}
     20053}
     20054@article{Loeschberger2012,
     20055  number = {3},
     20056  year = {2012},
     20057  title = {Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution},
     20058  pages = {570-575},
     20059  journal = {Journal of Cell Sciences},
     20060  volume = {125},
     20061  author = {{L\"oschberger}, A. and Linde, S. van de and Dabauvalle, M.C. and Rieger, B. and Heilemann, M. and Krohne, G. and Sauer, M.}
     20062}
     20063@article{Broek2012,
     20064  year = {2012},
     20065  title = {Fully Automated Measurement of the Modulation Transfer Function of Charge-Coupled Devices above the Nyquist Frequency},
     20066  journal = {Microscopy and Microanalysis},
     20067  author = {Broek, W. van den and Aert, A. van and Dyck, D. van}
     20068}
     20069@article{Humphry2012,
     20070  year = {2012},
     20071  title = {Ptychographic electron microscopy using high-angle dark-field scattering for sub-nanometre resolution imaging},
     20072  pages = {730-736},
     20073  note = {DOI: 10.1038/ncomms1733},
     20074  journal = {Nature communications},
     20075  volume = {3},
     20076  author = {Humphry, M.J. and Kraus, B. and Hurst, A.C. and Maiden, A.M. and Rodenburg, J.M.}
     20077}
     20078@article{Zhang2012,
     20079  number = {1},
     20080  year = {2012},
     20081  title = {{IPET} and {FETR}: Experimental Approach for Studying Molecular Structure Dynamics by Cryo-Electron Tomography of a Single-Molecule Structure},
     20082  pages = {e30249},
     20083  journal = {PLOS one},
     20084  volume = {7},
     20085  author = {Zhang, L. and ren, G.}
     20086}
     20087@mastersthesis{Nieuwenhuizen2011,
     20088  month = {March},
     20089  year = {2011},
     20090  title = {Resolution in localization microscopy},
     20091  address = {Delft, The Netherlands},
     20092  school = {Delft University of Technology},
     20093  author = {R.P.J. Nieuwenhuizen}
     20094}
     20095@book{Penczek2010,
     20096  year = {2010},
     20097  title = {Resolution Measures in Molecular Electron Microscopy},
     20098  note = {p 73-100},
     20099  volume = {482},
     20100  publisher = {Academic Press},
     20101  author = {Penczek, P.A.}
     20102}
     20103@article{Beckmann1997,
     20104  number = {5346},
     20105  year = {1997},
     20106  title = {Alignment of conduits for the nascent polypeptide chain in the ribosome-sec61 complex},
     20107  pages = {213-2126},
     20108  journal = {Science},
     20109  volume = {278},
     20110  author = {Beckmann, R. and Bubeck, D. and Grassucci, R. and Penczek, P.A. and Verschoor, A. and Blobel, G. and Frank, J.}
     20111}
     20112@article{Bottcher1997,
     20113  number = {6620},
     20114  year = {1997},
     20115  title = {Determination of the fold of the core protein of
     20116hepatitis b virus by electron cryomicroscopy},
     20117  pages = {88-91},
     20118  journal = {Nature},
     20119  volume = {386},
     20120  author = {{B\"ottcher}, B. and Wynne, S.A. and Crowther, R.A.}
     20121}
     20122@article{SheppardOptikVol72No4_1986,
     20123  number = {4},
     20124  year = {1986},
     20125  title = {The spatial frequency cut-off in three-dimensional imaging},
     20126  pages = {131--133},
     20127  journal = {Optik},
     20128  volume = {72},
     20129  author = {Sheppard, C.J.R.}
     20130}
     20131@article{SheppardOptikVol74No3_1986,
     20132  number = {3},
     20133  year = {1986},
     20134  title = {The spatial frequency cut-off in three-dimensional imaging II},
     20135  pages = {128--129},
     20136  journal = {Optik},
     20137  volume = {74},
     20138  author = {Sheppard, C.J.R.}
     20139}
     20140@book{Saxton1978,
     20141  year = {1978},
     20142  title = {Computer Techniques for Image Processing of Electron Microscopy},
     20143  address = {New York},
     20144  publisher = {Academic Press},
     20145  author = {Saxton, W.O.}
     20146}
     20147@article{Orlova1997,
     20148  number = {3},
     20149  year = {1997},
     20150  title = {Structure of Keyhole Limpet Hemocyanin Type 1 (KLH1) at 15 A Resolution by Electron Cryomicroscopy and Angular Reconstitution},
     20151  pages = {417-437},
     20152  journal = {Journal of Molecular Biology},
     20153  volume = {271},
     20154  author = {Orlova, E.V. and Dube, P. and Harris, J.R. and Beckman, E. and Zemlin, F. and Markl, J. and  Heel, M. van}
     20155}
     20156@article{Corless1996,
     20157  number = {1},
     20158  year = {1996},
     20159  title = {On the Lambert-W function},
     20160  pages = {329-359},
     20161  journal = {Advances in Computational Mathematics},
     20162  volume = {5},
     20163  url = {http://dx.doi.org/10.1007/BF02124750},
     20164  author = {Corless, R. and Gonnet, G. and Hare, D. and Jeffrey, D. and Knuth, D.}
     20165}
     20166@article{Barry2000,
     20167  number = {1-2},
     20168  year = {2000},
     20169  title = {Analytical approximations for real values of the {Lambert W-function}},
     20170  pages = {95-103},
     20171  journal = {Mathematics and Computers in Simulation},
     20172  volume = {53},
     20173  url = {http://www.sciencedirect.com/science/article/pii/S0378475400001725},
     20174  author = {Barry,D.A  and  Parlange, J.-Y and  Li, L. and  Prommer, H. and Cunningham, C.J. and Stagnitti, F.}
     20175}
     20176@article{Ram2009,
     20177  number = {8},
     20178  year = {2009},
     20179  title = {Improved single particle localization accuracy with dual objective multifocal plane mircoscopy},
     20180  pages = {6881-6898},
     20181  journal = {Optics Express},
     20182  volume = {17},
     20183  author = {Ram, S. and Prabhat, P. and Ward, E.S. and Ober, R.J.}
     20184}
     20185@article{Wong2011,
     20186  number = {3},
     20187  year = {2011},
     20188  title = {Limit of the Accuracy of Parameter Estimation for Moving Single Molecules Imaged by Fluorescence Microscopy},
     20189  pages = {895-911},
     20190  journal = {IEEE Transactions on Signal Processing},
     20191  volume = {59},
     20192  author = {Wong, Y. and Lin, Z. and Ober, R.J.}
     20193}
     20194@article{Chao2012,
     20195  year = {2012},
     20196  title = {Fisher information matrix for branching processes
     20197with application to electron-multiplying charge-coupled devices},
     20198  pages = {349-379},
     20199  journal = {Multidimensional System and Signal Processing},
     20200  volume = {23},
     20201  author = {Chao, J. and Ward, E.S. and Ober, R.J.}
     20202}
     20203@article{Dempsey2011,
     20204  number = {12},
     20205  year = {2011},
     20206  title = {Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging},
     20207  pages = {1027-1031},
     20208  journal = {Nature Methods},
     20209  volume = {8},
     20210  author = {Dempsey, G.T. and Vaughan, J.C. and Chen, K.H. and Bates, M. and Zhuang, X.}
     20211}
     20212@article{Manely2008,
     20213  number = {2},
     20214  year = {2008},
     20215  title = {High-density mapping of single-molecule trajectories with photoactivated localization microscopy},
     20216  pages = {156-158},
     20217  journal = {Nature Methods},
     20218  volume = {5},
     20219  author = {Manely, S. and Gilette, J.M. and Patterson, G.H. and Shroff, H. and Hess, H.F. and Betzig, E. and Lippincott-Schwarz, J.}
     20220}
     20221@article{Wicker2010a,
     20222  year = {2010},
     20223  title = {Single-shot optical sectioning using polarization-coded structured illumination},
     20224  pages = {084010},
     20225  journal = {Journal of Optics},
     20226  author = {Wicker, K. and Heintzmann, R.}
     20227}
     20228@article{Schoen2011,
     20229  year = {2011},
     20230  title = {Binding-Activated Localization Microscopy of {DNA} Structures},
     20231  journal = {Nano Letters},
     20232  author = {Schoen, I. and Ries, J. and Klotzsch, E. and Ewers, H. and Vogel, V.}
     20233}
     20234@article{Vrabioiu2006,
     20235  number = {28},
     20236  year = {2006},
     20237  title = {Structural insights into yeast septin organization
     20238from polarized fluorescence microscopy},
     20239  pages = {446-449},
     20240  journal = {Nature},
     20241  volume = {443},
     20242  author = {Vrabioiu, A.M. and Mitschison, T.J.}
     20243}
     20244@article{Lukosz1962a,
     20245  number = {4},
     20246  year = {1962},
     20247  title = {{\"Ubertragung} nicht-negativer Signale durch lineare Filter},
     20248  pages = {335-364},
     20249  journal = {Journal of Modern Optics},
     20250  volume = {9},
     20251  author = {Lukosz, W.}
     20252}
     20253@article{Fitzhugh1983,
     20254  year = {1983},
     20255  title = {Statistical Properties of the Asymmetric Random Telegraph Signal, with Applications to Single-Channel Analysis},
     20256  pages = {75-89},
     20257  journal = {Mathematical Biosciences},
     20258  volume = {64},
     20259  author = {R. Fitzhugh}
     20260}
     20261@article{Bobroff1986,
     20262  number = {6},
     20263  year = {1986},
     20264  title = {Position measurement with a resolution and noiselimited instrument},
     20265  pages = {1152-1157},
     20266  journal = {Review of Scientifric Instruments},
     20267  volume = {57},
     20268  author = {N. Bobroff}
     20269}
     20270@article{Heintzmann2007,
     20271  year = {2007},
     20272  title = {Estimating missing information by maximum likelihood deconvolution},
     20273  pages = {136-144},
     20274  journal = {Micron},
     20275  volume = {38},
     20276  author = {Heintzmann, R.}
     20277}
     20278@article{Annibale2011,
     20279  number = {7},
     20280  year = {2011},
     20281  title = {Identification of clustering artifacts in
     20282photoactivated localization microscopy},
     20283  pages = {527-528},
     20284  journal = {Nature Methods},
     20285  volume = {8},
     20286  author = {Annibale, P. and Vanni, S. and Scarelli, M. and Rothlisberger, U. and Radenovic, A.}
     20287}
     20288@article{Ta2010,
     20289  number = {1},
     20290  year = {2010},
     20291  title = {An Extended Scheme for Counting Fluorescent Molecules by Photon- Antibunching},
     20292  pages = {119-124},
     20293  journal = {Laser Physics},
     20294  volume = {20},
     20295  author = {Ta, H. and Wolfrum, J. and Herten, D.-P.}
     20296}
     20297@article{Tian2012,
     20298  number = {8},
     20299  year = {2012},
     20300  title = {Experimental compressive phase space tomography},
     20301  pages = {8296-8308},
     20302  journal = {Optics Express},
     20303  volume = {20},
     20304  author = {Tian, L. and Lee, J. and Oh, S.B. and Barbastathis, G.}
     20305}
     20306@article{Waller2011,
     20307  number = {3},
     20308  year = {2011},
     20309  title = {Phase and amplitude imaging from noisy images by Kalman filtering},
     20310  pages = {2805-2815},
     20311  journal = {Optics Express},
     20312  volume = {19},
     20313  author = {Waller, L. and Tsang, M. and Ponda, S. and Young Yang, S. and Barbastathis, G.}
     20314}
     20315@inproceedings{Kurz2012,
     20316  series = {SPIE},
     20317  year = {2012},
     20318  title = {Quantification of fluorescent samples by photon-antibunching},
     20319  booktitle = {Single Molecule Spectroscopy and Superresolution Imaging V},
     20320  pages = {82280K-1},
     20321  editor = {Enderlein, J. and Karol, Z. and Erdmann, R. and Koberling, F. and Gregor, I.},
     20322  author = {Kurz, A. and Schwering, M. and Herten, D.-P.}
     20323}
     20324@article{Harms1999,
     20325  year = {1999},
     20326  title = {Single-Molecule Anisotropy Imaging},
     20327  pages = {2864-2870},
     20328  journal = {Bipphysical Journal},
     20329  volume = {77},
     20330  author = {Harms, G.S. and Sonnleitner, M. and {Sch\"utz}, G.J. and Gruber, H.J. and Schmidt, T.}
     20331}
     20332@article{Uji2006,
     20333  year = {2006},
     20334  title = {Visualizing spatial and temporal heterogeneity of single molecule rotational diffusion in a  glassy polymer by defocused wide-field imaging},
     20335  pages = {2511-2518},
     20336  journal = {Polymer},
     20337  volume = {47},
     20338  author = {Uij-i, H. and Melnikov, S.M. and Deres, A. Bergamini, G. and Schryver, F. de and Herrmann, A. and {M\"ullen}, K. and Enderlein, J. and Hofkens, J.}
     20339}
     20340@article{Ruiter1997,
     20341  year = {1997},
     20342  title = {Single Molecule Rotational and Translational Diffusion Observed by Near-Field Scanning Optical Microscopy},
     20343  pages = {7318-7323},
     20344  journal = {Journal of Physical Chemistry},
     20345  volume = {101},
     20346  author = {Ruiter, A.G.T. and Veerman, J.A. and Garcia-Parajo, M.F. and Hulst, N.F. van}
     20347}
     20348@article{Pieper2011,
     20349  year = {2011},
     20350  title = {Fluorescence correlation spectroscopy as a tool  for measuring the rotational diffusion of macromolecules},
     20351  pages = {1-11},
     20352  journal = {Chemical Physics Letters},
     20353  volume = {516},
     20354  author = {Pieper, C.M. and Enderlein, J.}
     20355}
     20356@article{Loman2011,
     20357  year = {2010},
     20358  title = {Measuring rotational diffusion of macromolecules by fluorescence correlation spectroscopy},
     20359  pages = {627-636},
     20360  journal = {Photochem. Photobiol. Sci.},
     20361  volume = {9},
     20362  author = {Loman, A. and Gergor, I. and Stutz, C. and Mund, M. and Enderlein, J.}
     20363}
     20364@article{Adhikarietal2011,
     20365  year = {2011},
     20366  title = {Temperature dependent single molecule rotational dynamics in {PMA}},
     20367  pages = {1849-1856},
     20368  journal = {Phys. Chem. Chem. Phys.},
     20369  volume = {13},
     20370  author = {Adhikari, S. and Selmke, M. and Cichos, F.}
     20371}
     20372@article{Malkusch2012,
     20373  year = {2012},
     20374  title = {Coordinate-based colocalization analysis of single-molecule localization microscopy data},
     20375  pages = {1-10},
     20376  journal = {Histochem Cell Biol},
     20377  volume = {137},
     20378  author = {Malkusch, S. and Endesfelder, U. and Mondry, J. and Helleri, M. and Verveer, P.J. and Heilemann, M.}
     20379}
     20380@article{Kazantsev2010,
     20381  year = {2010},
     20382  title = {Fully three-dimensional defocus-gradient corrected backprojection in cryoelectron microscopy},
     20383  pages = {1128-1142},
     20384  journal = {Ultramicroscopy},
     20385  volume = {110},
     20386  author = {Kazantsev, I. and Klukowska, J. and Herman, G.T. and Cernetic, L.}
     20387}
     20388@article{Mariani2011,
     20389  year = {2011},
     20390  title = {Simulation and correction of electron images of tilted planar weak-phase samples},
     20391  pages = {259-268},
     20392  journal = {Journal of Structural Biology},
     20393  volume = {174},
     20394  author = {Mariani, V. and Schenk, A.D. and Philippsen, A. and Engel, A.}
     20395}
     20396@inproceedings{Studer2012,
     20397  series = {Proceedings of the SPIE},
     20398  year = {2012},
     20399  title = {Hyperspectral fluorescence microscopy based on compressed sensing },
     20400  booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIX},
     20401  note = {doi: 10.1117/12.908532},
     20402  editor = {Conchello, J.-A. and Cogswell, C.J. and  Wilson, T. and  Brown, T.G.},
     20403  author = {Studer, V. and Bobin, J. and Chahid, M. and Moussavi, H. and Candes, E. and Dahan, M.}
     20404}
     20405@article{Gabor1946b,
     20406  year = {1946},
     20407  title = {Theory of Communication: Part II: The analysis of hearing},
     20408  pages = {442-445},
     20409  journal = {Journal of the Institution of Electrical Engineers},
     20410  volume = {93},
     20411  author = {Gabor, D.}
     20412}
     20413@article{Gabor1946c,
     20414  year = {1946},
     20415  title = {Theory of Communication: Part III: Frequency Compression and Expansion},
     20416  pages = {445-457},
     20417  journal = {Journal of the Institution of Electrical Engineers},
     20418  volume = {93},
     20419  author = {Gabor, D.}
     20420}
     20421@article{Chruchmann2012,
     20422  year = {2012},
     20423  title = {Colocalization of fluorescent probes: accurate and precise registration with  nanometer resolution},
     20424  pages = {141-150},
     20425  note = {doi:10.1101/pdb.top067918},
     20426  journal = {Cold Spring Harbor Protocolls},
     20427  author = {Churchmann, L.S. and Spudich, J.A.}
     20428}
     20429@article{Dedecker2009,
     20430  year = {2012},
     20431  title = {Defocused Wide-field Imaging Unravels Structural and Temporal Heterogeneity in Complex Systems},
     20432  pages = {1079-1090},
     20433  journal = {Advanced Materials},
     20434  volume = {21},
     20435  author = {Dedecker, P. and Muls, B. and Deres, A. and Uji-i, H. and Hotta, J. and Sliwa, M. and Soumillion, J.-P. and {M\"ullen}, K. and Enderlein, J. and Hofkens, J.}
     20436}
     20437@article{Ha1998,
     20438  number = {10},
     20439  year = {1998},
     20440  title = {Hindered Rotational Diffusion and Rotational Jumps of Single Molecules},
     20441  pages = {2093-2096},
     20442  journal = {Physical Review Letters},
     20443  volume = {80},
     20444  author = {Ha, T. and Glass, J. and Enderle, T. and Chemla, D.S. and Weiss, S.}
     20445}
     20446@article{Bartko2002,
     20447  number = {2},
     20448  year = {2002},
     20449  title = {Three-Dimensional Single Molecule Rotational Diffusion in Glassy State Polymer Films},
     20450  pages = {026101},
     20451  journal = {Physical Review Letters},
     20452  volume = {89},
     20453  author = {Bartko, A.P. and Xu, K. and Dickson, R.M.}
     20454}
     20455@article{Gould2008,
     20456  number = {12},
     20457  year = {2008},
     20458  title = {Nanoscale imaging of molecular positions and anisotropies},
     20459  pages = {1027-1031},
     20460  journal = {Nature Methods},
     20461  volume = {5},
     20462  author = {Gould, T.J. and Gunewardene, M.S. and Gudheti, M.V. and Verkhusha, V.V. and Yin, S.-R. and Gosse, J.A. and Hess, S.T.}
     20463}
     20464@article{Hernando2006,
     20465  year = {2006},
     20466  title = {Effect of Disorder on Ultrafast Exciton Dynamics Probed by Single Molecule Spectroscopy},
     20467  pages = {216403},
     20468  journal = {Physical Review Letters},
     20469  volume = {97},
     20470  author = {Hernando, J. and Dijk, E.M.H.P. van and Hoogenboom, J.P. and Garcia-Lopez, J.-J. and Reinhoudt, D.N. and Crego-Calama, M. and Garcia-Parajo, M.F. and Hulst, N.F. van}
     20471}
     20472@article{Simmonds2011,
     20473  number = {24},
     20474  year = {2011},
     20475  title = {Three dimensional laser microfabrication in diamond using a dual adaptive optics system},
     20476  pages = {24122-24128},
     20477  journal = {Optics Express},
     20478  volume = {19},
     20479  author = {Simmonds, R.D. and Salter, P.S. and Jesacher, A. and Booth, M.J.}
     20480}
     20481@article{Cumming2011,
     20482  number = {10},
     20483  year = {2011},
     20484  title = {Adaptive aberration compensation for three-dimensional micro-fabrication of photonic crystals in lithium niobate},
     20485  pages = {9419-9426},
     20486  journal = {Optics Express},
     20487  volume = {19},
     20488  author = {Cumming, B.P. and Jesacher, A. and Booth, M.J. and Wilson, T. and Gu, M.}
     20489}
     20490@article{Marshall2011,
     20491  number = {5},
     20492  year = {2011},
     20493  title = {Three-dimensional imaging of direct-written photonic structures},
     20494  pages = {695-697},
     20495  journal = {Optics Letters},
     20496  volume = {36},
     20497  author = {Marshall, G.D. and Jesacher, A. and Thayil, A. and Withford, M.J. and Booth, M.}
     20498}
     20499@article{Chizhik2011,
     20500  year = {2011},
     20501  title = {Probing the Radiative Transition of Single m olecules with a Tunable Microresonator},
     20502  pages = {1700-1703},
     20503  journal = {Nano Letters},
     20504  volume = {11},
     20505  author = {Chizihik, A.I. and Chizhik, A.M. and Khoptyar, D. and {B\"ar}, S. and Meixner, A.J. and Enderlein, J.}
     20506}
     20507@article{Kalaidzidis2007,
     20508  year = {2007},
     20509  title = {Intracelluar objects tracking},
     20510  pages = {569-578},
     20511  journal = {European Journal of Cell Biology},
     20512  volume = {86},
     20513  author = {Kalaidzidis, Y.}
     20514}
     20515@article{Kalaidzidis2009,
     20516  year = {2009},
     20517  title = {Multiple objects tracking in fluorescence microscopy},
     20518  pages = {57-80},
     20519  journal = {Journal of Mathematical Biology},
     20520  volume = {58},
     20521  author = {Kalaidzidis, Y.}
     20522}
     20523@article{Rink2005,
     20524  year = {2005},
     20525  title = {Rab Conversion as a Mechanism of Progression
     20526from Early to Late Endosomes},
     20527  pages = {735-749},
     20528  journal = {Cell},
     20529  volume = {122},
     20530  author = {Rink, J. and Ghigo, E. and Kalaidzidis, Y. and Zerial, M.}
     20531}
     20532@inproceedings{Bryne2012,
     20533  month = {May 2-5},
     20534  year = {2012},
     20535  title = {MODELS FOR BIOMEDICAL IMAGE RECONSTRUCTION
     20536BASED ON INTEGRAL APPROXIMATION METHODS},
     20537  booktitle = {IEEE International Symposium on Biomedical Imaging},
     20538  pages = {70-73},
     20539  address = {Barcelona, Spain},
     20540  author = {Bryne, C. and Gordon, D. and Heilper, D.},
     20541  organization = {IEEE}
     20542}
     20543@inproceedings{Becker2012,
     20544  month = {May 2-5},
     20545  year = {2012},
     20546  title = {FROM TIMELAPSE-DATA TO GENEALOGIC TREES: USING DIFFERENT CONTRAST
     20547MECHANISMS TO IMPROVE CELL TRACKING},
     20548  booktitle = {IEEE International Symposium on Biomedical Imaging},
     20549  pages = {386-389},
     20550  address = {Barcelona, Spain},
     20551  author = {Becker, T. and Rapoport, D.H. and Mamlouk, A.M.},
     20552  organization = {IEEE}
     20553}
     20554@inproceedings{Wang2012,
     20555  month = {May 2-5},
     20556  year = {2012},
     20557  title = {A HYBRID TOTAL-VARIATION MINIMIZATION APPROACH TO COMPRESSED SENSING},
     20558  booktitle = {IEEE International Symposium on Biomedical Imaging},
     20559  pages = {74-77},
     20560  address = {Barcelona, Spain},
     20561  author = {Wang, Y. and Liang, D. and Chang, Y. and Ying, L.},
     20562  organization = {IEEE}
     20563}
     20564@inproceedings{Cohen2012,
     20565  month = {May 2-5},
     20566  year = {2012},
     20567  title = {IMAGE REGISTRATION ERROR ANALYSIS WITH APPLICATIONS IN SINGLE MOLECULE MICROSCOPY},
     20568  booktitle = {IEEE International Symposium on Biomedical Imaging},
     20569  pages = {966-969},
     20570  address = {Barcelona, Spain},
     20571  author = {Cohen, E.A.K. and Ober, R.J.},
     20572  organization = {IEEE}
     20573}
     20574@inproceedings{Hu2012,
     20575  month = {May 2-5},
     20576  year = {2012},
     20577  title = {MITOSIS DETECTION OF HEMATOPOIETIC STEM CELL POPULATIONS IN TIME-LAPSE PHASE-CONTRAST MICROSCOPY IMAGES},
     20578  booktitle = {IEEE International Symposium on Biomedical Imaging},
     20579  pages = {390-393},
     20580  address = {Barcelona, Spain},
     20581  publisher = {IEEE},
     20582  author = {Huh, S. and Eom, S. and Elmer Ker, D.F. and Weiss, L. and Kanade, T.}
     20583}
     20584@inproceedings{Stallinga2012a,
     20585  month = {May 2-5},
     20586  year = {2012},
     20587  title = {THE EFFECT OF BACKGROUND ON LOCALIZATION UNCERTAINTY IN SINGLE EMITTER IMAGING},
     20588  booktitle = {IEEE International Symposium on Biomedical Imaging},
     20589  pages = {988-991},
     20590  address = {Barcelona, Spain},
     20591  publisher = {IEEE},
     20592  author = {Stallinga, S. and Rieger, B.}
     20593}
     20594@inproceedings{Wong2012,
     20595  month = {May 2-5},
     20596  year = {2012},
     20597  title = {Effect of Time Discretization on the Limit of the
     20598Accuracy of Parameter Estimation for Moving
     20599Single Molecules Imaged by Fluorescence
     20600Microscopy},
     20601  booktitle = {IEEE International Symposium on Biomedical Imaging },
     20602  pages = {1228-1231},
     20603  address = {Barcelona, Spain},
     20604  author = {Wong, Y. and Lin, Z. and Ober, R.J.}
     20605}
     20606@inproceedings{Ducroz2012,
     20607  month = {May 2-5},
     20608  year = {2012},
     20609  title = {CHARACTERIZATION OF CELL SHAPE AND DEFORMATION IN 3D USING SPHERICAL HARMONICS},
     20610  booktitle = {IEEE International Symposium on Biomedical Imaging },
     20611  address = {Barcelona, Spain},
     20612  author = {Ducroz, C. and Olivio-Marin, J.-C. and Dufor, A.},
     20613  organization = {IEEE}
     20614}
     20615@techreport{hassanich2012,
     20616  month = {Jan},
     20617  year = {2012},
     20618  title = {Nearly Optimal Sparse Fourier Transform},
     20619  address = {arXiv:1201.2501v1 [cs.DS] },
     20620  institution = {Massachusetts Institute of Technology, USA},
     20621  author = {Hassanieh, H. and Indyk, P. and Katabi, D. and Price, E.}
     20622}
     20623@inproceedings{Levet2012,
     20624  month = {May 2-5},
     20625  year = {2012},
     20626  title = {AUTOMATIC NON-PARAMETRIC CAPSID SEGMENTATION USING WAVELETS TRANSFORM AND GRAPH},
     20627  booktitle = {IEEE International Symposium on Biomedical Imaging},
     20628  address = {Barcelona, Spain},
     20629  author = {Levert, F. and Cassany, A. and Kann, M. and Sibarita, J.-B.},
     20630  organization = {IEEE}
     20631}
     20632@inproceedings{Jezierska2012,
     20633  month = {May 2-5},
     20634  year = {2012},
     20635  title = {POISSON-GAUSSIAN NOISE PARAMETER ESTIMATION IN FLUORESCENCE MICROSCOPY IMAGING},
     20636  booktitle = {IEEE International Symposium on Biomedical Imaging},
     20637  pages = {1663-1666},
     20638  address = {Barcelona, Spain},
     20639  author = {Jezierska, A. and Talbot, H. and Chaux, C. and Pesquet, J.-C. and Engler, G.},
     20640  organization = {IEEE}
     20641}
     20642@article{Vulovic2012,
     20643  year = {2012},
     20644  title = {Precise and unbiased estimation of astigmatism and defocus in transmission electron microscopy},
     20645  pages = {115-134},
     20646  journal = {Ultramicroscopy},
     20647  volume = {116},
     20648  author = {Vulovic, M. and Franken, E. and Ravelli, R.B.G. and Vliet, L.J. van and Rieger, B.}
     20649}
     20650@article{Mukamel2012,
     20651  year = {2012},
     20652  title = {Statistical Deconvolution for Superresolution Fluorescence Microscopy},
     20653  pages = {2391-2400},
     20654  journal = {Biophysical Journal},
     20655  volume = {102},
     20656  author = {Mukamel, E.A. and Babcock, H. and Zhuang, X.}
     20657}
     20658@article{Fernandez2012,
     20659  number = {10},
     20660  year = {2012},
     20661  title = {Computational Methods for Electron Tomography},
     20662  pages = {1010-1030},
     20663  journal = {Micron},
     20664  volume = {43},
     20665  author = {Fernandez, J.-J.}
     20666}
     20667@article{Kopek2012,
     20668  number = {16},
     20669  year = {2012},
     20670  title = {Correlative 3D superresolution fluorescence and
     20671electron microscopy reveal the relationship of
     20672mitochondrial nucleoids to membranes},
     20673  pages = {6136-6141},
     20674  journal = {Proceedings of the National Academy of Science USA},
     20675  volume = {109},
     20676  author = {Kopek, B.G. and Shtengel, G. and Shan Xu, C. and Clayton, D.A. and Hess, H.F.}
     20677}
     20678@article{Shtengel2009,
     20679  number = {9},
     20680  year = {2009},
     20681  title = {Interferometric fluorescent super-resolution
     20682microscopy resolves 3D cellular ultrastructure},
     20683  pages = {3125-3130},
     20684  journal = {Proceeding of the National Academy of Science USA},
     20685  volume = {106},
     20686  author = {Shtengel, G.and Galbraith, J.A. and Galbraith, C.G. and Lippincott-Schwartz, J. and Gillette, J.M. and Manely, S. and Sougrat, R. and Waterman, C.M. and Knachanawong, P. and Davidson, M.W. and Fetter, R.D. and Hess, H.F.}
     20687}
     20688@misc{materialsmethods,
     20689  title = {Materials and methods are available as supplementary material on {Science Online}.}
     20690}
     20691@article{Pavani2008,
     20692  number = {26},
     20693  year = {2008},
     20694  title = {Three dimensional tracking of fluorescent microparticles using a photon-limited double-helix response system},
     20695  pages = {22048-22057},
     20696  journal = {Optics Express},
     20697  volume = {16},
     20698  author = {Pavani, S.R.P. and Piestun, R.}
     20699}
     20700@article{Mlodzianoski2011,
     20701  number = {16},
     20702  year = {2011},
     20703  title = {Sample drift correction in 3D fluorescence photoactivation localization microscopy},
     20704  pages = {15009-15019},
     20705  journal = {Optics Express},
     20706  volume = {19},
     20707  author = {Mlodzianoski, M.J. and Schreiner, J.M. and Callahan, S.P. and Smolkova, K. and Dlaskova, A. and Santorova, J. and Jezek, P. and Bewersdorf, J.}
     20708}
     20709@article{Heilemann2005,
     20710  number = {11},
     20711  year = {2005},
     20712  title = {Carbocyanine dyes as efficient reversible single-molecule optical switch},
     20713  pages = {3801-3806},
     20714  journal = {Journal of the American Chemical Society},
     20715  volume = {127},
     20716  author = {Heilemann, M. and Margeat, E. and Kasper, R. and Sauer, M. and Tinnefeld, P. }
     20717}
     20718@inbook{Frank1980,
     20719  year = {1980},
     20720  title = {Computer Processing of Electron Microscope Images},
     20721  pages = {197-233},
     20722  editor = {Hawkes, P.W.},
     20723  chapter = {The Role of Correlation Techniques in Computer Image Processing},
     20724  publisher = {Springer Verlag},
     20725  author = {Frank, J.}
     20726}
     20727@article{Bolte2006,
     20728  number = {3},
     20729  year = {2006},
     20730  title = {A guided tour into subcellular colocalization analysis in light microscopy},
     20731  pages = {213-232},
     20732  journal = {Journal of Microscopy},
     20733  volume = {224},
     20734  author = {Bolte, S. and Cordelieres, F.P.}
     20735}
     20736@article{Adler2008,
     20737  number = {1},
     20738  year = {2008},
     20739  title = {Replicate-based noise corrected correlation for accurate measurements of colocalization},
     20740  pages = {121-133},
     20741  journal = {Journal of Microscopy},
     20742  volume = {230},
     20743  author = {Adler, J. and Pagakis, S.N. and Parmryd, I.}
     20744}
     20745@article{Ries2012,
     20746  number = {6},
     20747  year = {2012},
     20748  title = {A simple, versatile method for {GFP-based} super-resolution microscopy via nanobodies},
     20749  pages = {582-587},
     20750  journal = {Nature Methods},
     20751  volume = {9},
     20752  author = {Ries, J. and Kaplan, C. and Platonova, E. and Eghlidi, H. and Ewers, H.}
     20753}
     20754@article{Neumuller2010,
     20755  number = {11},
     20756  year = {2010},
     20757  title = {Photounbinding of Calmodulin from a Family of {CaM} Binding Peptides},
     20758  pages = {14050},
     20759  journal = {PlOS one},
     20760  volume = {5},
     20761  author = {{Neum\"uller}, K.G. and Elsayad, K. and Reisecker, J.M. and Waxham, M.N. and Heinze, K.G.}
     20762}
     20763@article{Mourik2012,
     20764  year = {2012},
     20765  title = {Signatures of Majorana Fermions in
     20766Hybrid Superconductor-Semiconductor
     20767Nanowire Devices},
     20768  pages = {1003-1008},
     20769  journal = {Science},
     20770  volume = {336},
     20771  author = {Mourik, V. and Zuo, K. and Frolov, S.M. and Plissard, S.R. and Bakkers, E.P.A.M. and Kouwenhouven, L.P.}
     20772}
     20773@article{Loenhout2012,
     20774  number = {10},
     20775  year = {2012},
     20776  title = {Non-Bias-Limited Tracking of Spherical Particles, Enabling Nanometer Resolution at Low Magnification},
     20777  pages = {2362-2371},
     20778  journal = {Biophysical Journal},
     20779  volume = {102},
     20780  author = {Loenhout, M.T.J. van and Kerssemakers, J.W.J. and Vlaminck, I. De and Dekker, C.}
     20781}
     20782@article{Hofmann2005,
     20783  number = {49},
     20784  year = {2005},
     20785  title = {Breaking the diffraction barrier in fluorescence microscopy at low light intensities by using reversibly photoswitchable proteins},
     20786  pages = {17565-17569},
     20787  journal = {Proceedings of the National Academy of Sciences USA},
     20788  volume = {102},
     20789  author = {Hofmann, M. and Eggeling, C. and Jakobs, S. and Hell, S.W.}
     20790}
     20791@article{Clifford2007,
     20792  number = {6987-69991},
     20793  year = {2007},
     20794  title = {Fluorescence of Single Molecules in Polymer Films: Sensitivity of Blinking to Local Environment},
     20795  journal = {The Journal of Physical Chemistry B Letters},
     20796  volume = {111},
     20797  author = {Clifford, J.N. and Bell, T.D.M. and Tinnefeld, P. and Heilemann, M. and Melnikov, S.M. and Hotta, J.-I. and Sliwa, M. and Dedecker, P. and Sauer, M. and Hofkens, J. and Yeow, E.K.L.}
     20798}
     20799@article{Isack2012,
     20800  year = {2012},
     20801  title = {Energy-Based Geometric Multi-model Fitting},
     20802  pages = {123-147},
     20803  journal = {International Journal of Computer Vision},
     20804  volume = {97},
     20805  author = {Isack, H. and Boybov, Y.}
     20806}
     20807@article{Rullgrad2011,
     20808  number = {3},
     20809  year = {2011},
     20810  title = {Simulation of transmission electron microscope images of biological specimens},
     20811  pages = {234-256},
     20812  journal = {Journal of Microscopy},
     20813  volume = {243},
     20814  author = {{Rullgr\aad}, H. and {\"Ofverstedt}, L.-G. and Masich, S. and Daneholt, B. and {\"Oktem}, O.}
     20815}
     20816@article{York2012,
     20817  number = {7},
     20818  year = {2012},
     20819  title = {Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy},
     20820  pages = {749-754},
     20821  journal = {Nature Methods},
     20822  volume = {9},
     20823  author = {York, A.G. and Parekh, S.H. and Nogare, D.D. and Fischer, R.S. and Temprine, K. and Mione, M. and Chitnis, A.B. and Combs, C.A. and Shroff, H.}
     20824}
     20825@article{Cleveland1979,
     20826  number = {368},
     20827  month = {Dec.},
     20828  year = {1979},
     20829  title = {Robust Locally Weighted Regression and Smoothing Scatterplots},
     20830  pages = {829-836},
     20831  journal = {Journal of the American Statistical Association},
     20832  volume = {74},
     20833  author = {Cleveland, W.S.}
     20834}
     20835@book{Erni2010a,
     20836  year = {2010},
     20837  title = {Aberration-Corrected Imaging in Transmission Electron Microscopy},
     20838  address = {London, UK},
     20839  publisher = {Imperial College Press},
     20840  author = {Erni, R.}
     20841}
     20842@article{Saghi2012,
     20843  year = {2012},
     20844  title = {Electron Tomography in the {(S)TEM}: From Nanoscale
     20845Morphological Analysis to {3D} Atomic Imaging},
     20846  pages = {59-79},
     20847  journal = {Annu. Rev. Mater. Res.},
     20848  volume = {42},
     20849  author = {Saghi,  A. and Midgley, P.A.}
     20850}
     20851@article{Midgley2009,
     20852  year = {2009},
     20853  title = {Electron tomography and holography in materials science},
     20854  pages = {271-280},
     20855  journal = {Nature Materials},
     20856  volume = {8},
     20857  author = {Midgley, P.A. and Dunin-Borkowski, R.E.}
     20858}
     20859@article{Midgley2003,
     20860  year = {2003},
     20861  title = {{3D} electron microscopy in the physical sciences: the development of {Z-contrast} and {EFTEM} tomography},
     20862  pages = {413-431},
     20863  journal = {Ultramicroscopy},
     20864  volume = {96},
     20865  author = {Midgley, P.A. and Weyland, M.}
     20866}
     20867@article{Spontak1988,
     20868  year = {1988},
     20869  title = {Three-dimensional study of cylindrical morphology in a styrene-butadiene-styrene block copolymer},
     20870  pages = {387-395},
     20871  journal = {Polymer},
     20872  volume = {29},
     20873  author = {Spontak, R.J. and Williams, M.C. and Agard, D.A.}
     20874}
     20875@article{Friedrich2005,
     20876  year = {2005},
     20877  title = {Comparison of intensity distributions in tomograms from {BF TEM, ADF TEM, HAADF STEM}, and calculated tilt series},
     20878  pages = {18-27},
     20879  journal = {Ultramicroscopy},
     20880  volume = {106},
     20881  author = {Friedrich, H. and McCartney, M.R. and Buseck, P.R.}
     20882}
     20883@article{Kubel2005,
     20884  number = {5},
     20885  year = {2005},
     20886  title = {Recent Advances in Electron Tomography: {TEM} and {HAADF-STEM} Tomography for Materials Science and Semiconductor Applications},
     20887  pages = {378-400},
     20888  journal = {Microscopy and Microanalysis},
     20889  volume = {11},
     20890  author = {{K\"ubel}, C. and Voigt, A. and Schoenmakers, R. and Otten, M. and Su, D. and Lee, T.-C. and Carlsson, A. and Bradley, J.}
     20891}
     20892@article{Rose1975,
     20893  year = {1975},
     20894  title = {Zur Theorie der Bildentstehung im Elektronenmikroskop},
     20895  pages = {217-244},
     20896  journal = {Optik},
     20897  volume = {42},
     20898  author = {Rose, H.}
     20899}
     20900@article{Freitag1981,
     20901  year = {1981},
     20902  title = {Resolution and contrast of crystalline objects in high-resolution scanning electron microscopy},
     20903  pages = {407-429},
     20904  journal = {Optik},
     20905  volume = {59},
     20906  author = {Freitag, J. and Rose, H.}
     20907}
     20908@incollection{Nellist2000a,
     20909  series = {113},
     20910  year = {2000},
     20911  title = {The principle and interpretation of annular dark-field Z-contrast imaging},
     20912  booktitle = {Advances in Imaging and Electron Physics},
     20913  pages = {147-203},
     20914  author = {Nellist, P.D. and Pennycook, S.J.}
     20915}
     20916@article{Zhu2012,
     20917  number = {7},
     20918  year = {2012},
     20919  title = {Faster {STORM} using compressed sensing},
     20920  pages = {721-726},
     20921  journal = {Nature Methods},
     20922  volume = {9},
     20923  author = {Zhu, L. and Zhang, W. and Elnatan, D. and Huang, B.}
     20924}
     20925@article{Zecevic2012,
     20926  number = {17},
     20927  year = {2012},
     20928  title = {Mesoporosity of Zeolite {Y}: Quantitative Three-Dimensional Study by Image Analysis of Electron Tomograms},
     20929  pages = {4213-4217},
     20930  journal = {Angewandte Chemie Int. Ed.},
     20931  volume = {51},
     20932  author = {Zecevic, J. and Gommes, C.J. and Friedrich, H. and
     20933Jongh, P.E. de and Jong, K.P. de}
     20934}
     20935@article{Brilot2012,
     20936  year = {2012},
     20937  title = {Beam-induced motion of vitrified specimen on holey carbon film},
     20938  pages = {630-637},
     20939  journal = {Journal of Structural Biology},
     20940  volume = {177},
     20941  author = {Brilot, A.F. and Chen, J.Z. and Cheng, A. and Pan, J. and Harrison, S.C .and Potter, C.S. and Carragher, B. and Henderson, R. and Grigorieff, N.}
     20942}
     20943@article{Brettschneider2007,
     20944  year = {2007},
     20945  title = {Breaking the Diffraction Barrier in Fluorescence Microscopy by Optical Shelving},
     20946  pages = {218103},
     20947  journal = {Physical Review Letters},
     20948  author = {Bretschneider, S. and Eggeling, C. and Hell, S.W.}
     20949}
     20950@article{Testa2008,
     20951  number = {25},
     20952  year = {2008},
     20953  title = {Nanoscale separation of molecular species based
     20954on their rotational mobility},
     20955  pages = {21094-21105},
     20956  journal = {Optics Express},
     20957  volume = {16},
     20958  author = {Testa, I. and {Sch\"onle}, A. and Middendoff, C. von and Geisler, C. and Medda, R. and Wurm, C.A. and Stiel, A.C. and Jakobs, S. and Bossi, M. and Eggeling, C. and Hell, S.W. and Egner, A.}
     20959}
     20960@article{Baddeley2011,
     20961  number = {5},
     20962  year = {2011},
     20963  title = {{4D} Super-Resolution Microscopy with Conventional
     20964Fluorophores and Single Wavelength Excitation in
     20965Optically Thick Cells and Tissues},
     20966  pages = {e20645},
     20967  journal = {PLOS one},
     20968  volume = {6},
     20969  author = {Baddeley, D. and Crossman, D. and Rossberger, S. and Cheyne, J.E. and Montgomery, J.M. and Jayasinghe, I.D. and Cremer, C. and Cannell, M.B. and {S\"oller}, C.}
     20970}
     20971@article{Testa2011,
     20972  year = {2010},
     20973  title = {Multicolor Fluorescence Nanoscopy in Fixed and  Living Cells by Exciting Conventional Fluorophores with a Single Wavelength},
     20974  pages = {2686-2694},
     20975  journal = {Biophysical Journal},
     20976  volume = {99},
     20977  author = {Testa, I. and Wurm, C.A. and Medda, R. and Rothermel, E. and Middendorf, C. von and {F\"olling}, J. and Jakobs, S. and {Sch\"onle}, A. and }
     20978}
     20979@article{Gunawerdene2011,
     20980  year = {2011},
     20981  title = {Superresolution Imaging of Multiple Fluorescent Proteins with Highly Overlapping Emission Spectra in Living Cells},
     20982  pages = {1522-1528},
     20983  journal = {Biophysical Journal},
     20984  volume = {101},
     20985  author = {Gunewardene, M.S. and Subach, F.V. and Gould, T.J. and Penoncello, G.P. and Gudheti, M.V. and Verkhusha, V.V. and Hess, S.T.}
     20986}
     20987@article{Bohmer2003,
     20988  number = {3},
     20989  year = {2003},
     20990  title = {Orientation imaging of single molecules by wide-field epifluorescence microscopy},
     20991  pages = {554-559},
     20992  journal = {Journal of the Optical Society of America B},
     20993  volume = {20},
     20994  author = {{B\"ohmer}, M. and Enderlein, J.}
     20995}
     20996@article{Fitzgerald2012,
     20997  year = {2012},
     20998  title = {Estimation Theoretic Measure of Resolution for Stochastic Localization Microscopy},
     20999  pages = {048102},
     21000  journal = {Physical Review Letters},
     21001  volume = {109},
     21002  author = {Fitzgerald, J.E. and Lu, J. and Schnitzer, M.J.}
     21003}
     21004@article{Test2012,
     21005  year = {2012},
     21006  title = {Test},
     21007  journal = {bla},
     21008  author = {Ronald}
     21009}
  • qipapers.html

    r536 r537  
    1414     (see http://www.lri.fr/~filliatr/bibtex2html/),
    1515     with the following command:
    16      /usr/bin/bibtex2html -o - -t qipapers.html -s plain /tmp/tmpLc7Arv.bib  -->
     16     /usr/bin/bibtex2html -o - -t qipapers.html -s plain /tmp/tmpfI0n0x.bib  -->
    1717
    1818<h1>qipapers.html</h1>
Note: See TracChangeset for help on using the changeset viewer.