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r593 r594 18117 18117 journal = {Journal of Microscopy}, 18118 18118 volume = {216}, 18119 author = {Hanser, B.M. and Gustafsson, M.G.L. and Agard, 18119 author = {Hanser, B.M. and Gustafsson, M.G.L. and Agard, D.A. and Sedat, J.W.} 18120 } 18121 @book{Bharucha-Reid1960, 18122 year = {1960}, 18123 title = {Elements of the Theory of Markov Processes and Their Applications}, 18124 publisher = {New York: McGraw-Hill}, 18125 author = {Bharucha-Reid, A. T} 18126 } 18127 @article{Herring2010, 18128 year = {2010}, 18129 title = {Coherent electron interference from amorphous 18130 TEM specimens}, 18131 journal = {Journal of Electron Microscopy}, 18132 author = {Herring, R.A. and Saitoh, K. and Tanaka, N. and Tanji, T.} 18133 } 18134 @article{Schmidt2008, 18135 number = {6}, 18136 year = {2008}, 18137 title = {Spherical nanosized focal spots unravels the interior of cells}, 18138 pages = {539-544}, 18139 journal = {Nature Methods}, 18140 volume = {5}, 18141 author = {Schmidt, R. and Wurm, C.A. and Jakobs, S. and Engelhardt, J. and Egner, A. and Hell, S.W.} 18142 } 18143 @article{Kner2009, 18144 number = {5}, 18145 year = {2009}, 18146 title = {Super-resolution video microscopy of live cells by structured illumination}, 18147 pages = {339-344}, 18148 journal = {Nature Methods}, 18149 volume = {6}, 18150 author = {Kner, P. and Chhun, B.B. and Griffs, E.R. and Winoto, L. and Gustafsson, M.G.L.} 18151 } 18152 @article{Heintzmann2009, 18153 year = {2009}, 18154 title = {Subdiffraction resolution in continuous samples}, 18155 pages = {362-364}, 18156 journal = {Nature Photonics}, 18157 volume = {3}, 18158 author = {Heintzmann, R. and Gustafsson, M.G.L.} 18159 } 18160 @article{Boulanger2010, 18161 number = {2}, 18162 year = {2010}, 18163 title = {Patch-Based Nonlocal Functional for Denoising 18164 Fluorescence Microscopy Image Sequences}, 18165 pages = {442-454}, 18166 journal = {IEEE Transactions on Medical Image Processing}, 18167 volume = {29}, 18168 author = {Boulanger, J. and Kervrann, C. and Bouthemy, P. and Elbau, P. and Sibarita, J.-B. and Salamero, J.} 18169 } 18170 @article{Carlton2010, 18171 year = {2010}, 18172 title = {Fast live simultaneous multiwavelength four-dimensional optical microscopy}, 18173 journal = {Proceedings of the National Academy of Sciences}, 18174 author = {Carlton, P.M. and Boulanger, J. and Kervrann, C. and Sibarita, J.-B. and Salamero, J. and Gordon-Messer, S. and Bressan, D. and Haber, J.E. and Haase, S. and Shao, L. and Winoto, L. and Matsuda, A. and Kner, P. and Uzawa, S. and Gustafsson, M.G.F. and Kam, Z. and Agard, D.A. and Sedat, J.W.} 18175 } 18176 @article{Grabenbauer2005, 18177 year = {2005}, 18178 title = {Correlative microscopy and electron tomography of GFP through photooxidation}, 18179 pages = {857-862}, 18180 journal = {Nature Methods}, 18181 volume = {2}, 18182 author = {Grabenbauer, M. and Geerts, W.J. and Fernadez-Rodriguez, J. and Hoenger, A. and Koster, A.J. and Nilsson, T.} 18183 } 18184 @article{Folling2008, 18185 year = {2008}, 18186 title = {Fluorescence nanoscopy by ground-state depletion and single-molecule return}, 18187 pages = {943-945}, 18188 journal = {Nature Methods}, 18189 volume = {5}, 18190 author = {{F\"olling}, J. and Bossi, M. and Bock, H. and Medda, R. and Wurm, C.A. and Hein, B. and Jacobs, S. and Eggeling, C. and Hell, S.W.} 18191 } 18192 @article{Agronskaia2008, 18193 number = {2}, 18194 year = {2008}, 18195 title = {Integrated fluorescence and transmission electron microscopy}, 18196 pages = {183-189}, 18197 journal = {Journal of Structural Biology}, 18198 volume = {164}, 18199 author = {Agronskaia, A.V. and Valtentijn, J.A. and Driel, L.F. van and Schneidenberg, C. and Humbel, B.M. and Henegouwen, P. and Verkleij, A.J. and Koster, A.J. and Gerritsen, H.C.} 18200 } 18201 @article{Aguet2009, 18202 number = {8}, 18203 year = {2009}, 18204 title = {Super-resolution orientation estimation and localization of fluorescent dipoles using 3-D steerable filters}, 18205 pages = {6829}, 18206 journal = {Optics Express}, 18207 volume = {17}, 18208 author = {Aguet, F. and Geissbuhler, S. and Marki, I. and Lasser, T. and Unser, M.} 18209 } 18210 @article{Giepmans2005, 18211 year = {2005}, 18212 title = {Correlated light and electron microscopic imaging of multiple endogenous proteins using quantum dots}, 18213 pages = {743-749}, 18214 journal = {Nature Methods}, 18215 volume = {10}, 18216 author = {Giepmans, B.N.G. and Deerinck, T.J. and Smarr, B.L. and Jones, Y.Z. and Ellisman, M.H.} 18217 } 18218 @article{Stallinga2004, 18219 number = {9}, 18220 year = {2004}, 18221 title = {Light distribution close to focus in biaxially birefringent media 18222 }, 18223 pages = {1785-1788}, 18224 journal = {Journal of the Optical Society of America A}, 18225 volume = {21}, 18226 author = {Stallinga, S.} 18227 } 18228 @article{Wang2010, 18229 number = {4}, 18230 year = {2010}, 18231 title = {In vitro and in vivo imaging with quantum dots }, 18232 pages = {1397-1415}, 18233 journal = {Analytical and Bioanalytical Chemistry }, 18234 volume = {397}, 18235 author = {Wang, C. and Gao, X. and Su, X.} 18236 } 18237 @article{Jamieson2007, 18238 number = {31}, 18239 year = {2007}, 18240 title = {Biological applications of quantum dots }, 18241 pages = {4717-4732}, 18242 journal = {Biomaterials}, 18243 volume = {28}, 18244 author = {Jamieson, T. and Bakhshi, R. and Petrova, D. and Pocock, R. and Imani, M. and Seifalian, A.M.} 18245 } 18246 @article{Abraham2009, 18247 number = {26}, 18248 year = {2009}, 18249 title = {Quantitative study of single molecule location estimation techniques }, 18250 pages = {23352-23373}, 18251 journal = {Optics Express}, 18252 volume = {17}, 18253 author = {Abraham, A.V. and Ram, S. and Chao, J. and Ward, E.S. and Ober, R.J.} 18254 } 18255 @article{Chao2009, 18256 number = {26}, 18257 year = {2009}, 18258 title = {A comparative study of high resolution microscopy imaging modalities using a three-dimensional resolution measure}, 18259 pages = {24377-24401}, 18260 journal = {Optics Express}, 18261 volume = {17}, 18262 author = {Chao, J. and Ram, S. and Ward, E.S. and Ober, R.J.} 18263 } 18264 @article{Ram2008, 18265 number = {12}, 18266 year = {2008}, 18267 title = {High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells }, 18268 pages = {6025-6043}, 18269 journal = {Biophysical Journal}, 18270 volume = {95}, 18271 author = {Ram, S. and Prabhar, P. and Chao, J. and Ward, E.S. and Ober, R.J.} 18272 } 18273 @article{Wilson1997, 18274 year = {1997}, 18275 title = {The imaging of dielectric point scatterers in conventional and confocal polarisation microscopes}, 18276 pages = {298-313}, 18277 journal = {Optics Communications}, 18278 volume = {141}, 18279 author = {Wilson, T. and Juskaitis, R. and Higdon, P.D.} 18280 } 18281 @article{Stallinga2010, 18282 number = {24}, 18283 year = {2010}, 18284 title = {Accuracy of the {Gaussian} Point Spread Function model in {2D} localization microscopy 18285 }, 18286 pages = {24461-24476}, 18287 journal = {Optics Express}, 18288 volume = {18}, 18289 author = {Stallinga, S. and Rieger, B.} 18290 } 18291 @article{Barrett1995, 18292 number = {5}, 18293 year = {1995}, 18294 title = {Objective assessment of image quality. II. Fisher information, Fourier crosstalk, and 18295 figures of merit for task performance}, 18296 pages = {834-853}, 18297 journal = {Journal of the Optical Society of America A}, 18298 volume = {12}, 18299 author = {Barrett, H. H. and Denny, J.L. and Wagner, R.F. and Myers, K.J.} 18300 } 18301 @article{Foreman2007, 18302 number = {21}, 18303 year = {2007}, 18304 title = {Photon statistics in single molecule 18305 orientational imaging}, 18306 pages = {13597-13606}, 18307 journal = {Optics Express}, 18308 volume = {15}, 18309 author = {Foreman, M.R. and Sherif, S.S. and {T\"or\"ok}, P.} 18310 } 18311 @article{Haeberle2003, 18312 number = {22}, 18313 year = {2003}, 18314 title = {Point spread function of optical microscopes 18315 imaging through stratified media}, 18316 pages = {2964-2969}, 18317 journal = {Optics Express}, 18318 volume = {11}, 18319 author = {{Haeberl\'e}, O. and Ammar, M. and Furukawa, H. and Tenjimbayashi, K. and {T\"or\"ok}, P.} 18320 } 18321 @article{McGuire1994, 18322 number = {22}, 18323 year = {1994}, 18324 title = {Polarization aberrations. 18325 1. Rotationally symmetric optical systems}, 18326 pages = {5080-5100}, 18327 journal = {Applied Optics}, 18328 volume = {33}, 18329 author = {McGuire, J.P. Jr. and Chipman, R.A.} 18330 } 18331 @article{McGuire1994a, 18332 number = {22}, 18333 year = {1994}, 18334 title = {Polarization aberrations. 18335 2. Tilted and decentered optical systems}, 18336 pages = {5101-5107}, 18337 journal = {Applied Optics}, 18338 volume = {33}, 18339 author = {McGuire, J.P. Jr. and Chipman, R.A.} 18340 } 18341 @article{Muller2005, 18342 year = {2005}, 18343 title = {Measures of performance in nonlinear estimation 18344 tasks: prediction of estimation performance at low signal-to-noise ratio}, 18345 pages = {3697-3715}, 18346 journal = {Physics in Medicine and Biology}, 18347 volume = {50}, 18348 author = {{M\"uller}, S.P. and Abbey, C.K. and Rybicki, F.J. and Moore, S.C. and Kijewski, M.F.} 18349 } 18350 @article{Ji2010, 18351 number = {2}, 18352 year = {2010}, 18353 title = {Adaptive optics via pupil segmentation for 18354 high-resolution imaging in biological tissues}, 18355 pages = {141-150}, 18356 journal = {Nature Methods}, 18357 volume = {7}, 18358 author = {Ji, N. and Milkie, D.E. and Betzig, E.} 18359 } 18360 @article{Wombacher2010, 18361 number = {9}, 18362 year = {2010}, 18363 title = {Live-cell super-resolution imaging with trimethoprim conjugates}, 18364 pages = {717-722}, 18365 journal = {Nature Methods}, 18366 volume = {7}, 18367 author = {Wormbacher, R. and Heidbreder, M. and Linde, S. van de and Sheetz, M.P. and Heilemann, M. and Cornish, V.W. and Sauer, M.} 18368 } 18369 @article{Henriques2010, 18370 number = {5}, 18371 year = {2010}, 18372 title = {Quick{PALM}: 3D real-time photoactivation nanoscopy image processing in {ImageJ}}, 18373 pages = {339-340}, 18374 journal = {Nature Methods}, 18375 volume = {7}, 18376 author = {Henriques, R. and Lelek, M. and Fornasiero, E.F. and Valtorta, F. and Zimmer, C. and Mhlanga, M.M.} 18377 } 18378 @article{Dertinger2009, 18379 number = {52}, 18380 year = {2009}, 18381 title = {Fast, background-free, {3D} super-resolution optical fluctuation imaging {(SOFI)}}, 18382 pages = {22287-22292}, 18383 journal = {Proceedings of the National Academy of Sciences USA}, 18384 volume = {106}, 18385 author = {Dertinger, T. and Colyer, R. and Iyer, G. and Weiss, S. and Enderlein, J.} 18386 } 18387 @article{Dertinger2010, 18388 number = {18}, 18389 year = {2010}, 18390 title = {Achieving increased resolution and more pixels 18391 with Superresolution Optical Fluctuation 18392 Imaging {(SOFI)}}, 18393 pages = {18875-11885}, 18394 journal = {Optics Express}, 18395 volume = {18}, 18396 author = {Dertinger, T. and Colyer, R. and Vogel, R. and Enderlein, J. and Weiss, S.} 18397 } 18398 @article{Landau1967, 18399 number = {1}, 18400 year = {1967}, 18401 title = {Necessary density conditions for sampling and interpolation of certain entire function}, 18402 pages = {37-52}, 18403 journal = {Acta Mathematica}, 18404 volume = {117}, 18405 author = {Landau, H.} 18406 } 18407 @article{Heilemann2008, 18408 number = {33}, 18409 year = {2008}, 18410 title = {Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes}, 18411 pages = {6172-6176}, 18412 journal = {Angewannte Chemie}, 18413 volume = {47}, 18414 author = {Heilemann, M. and Linde, S. van de and {Sch\"uttpelz}, M. and Kasper, R. and Seefeldt, B. and Mukherjee, A. and Tinnefeld, P. and Sauer, M.} 18415 } 18416 @article{Gustafsson2000, 18417 number = {2}, 18418 year = {2000}, 18419 title = {Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy}, 18420 pages = {82-87}, 18421 journal = {Journal of Microscopy}, 18422 volume = {198}, 18423 author = {Gustafsson, M.G.L.} 18424 } 18425 @article{Dedecker2007, 18426 year = {2007}, 18427 title = {Orientational effects in the excitation 18428 and de-excitation of single molecules interacting with donut-mode laser beams}, 18429 pages = {3372-3383}, 18430 journal = {Optics Express}, 18431 volume = {15}, 18432 author = {Dedecker, P. and Muls, B. and Hofkens, J. and Enderlein, J. and Hotta, J. } 18433 } 18434 @article{Smal2010, 18435 year = {2010}, 18436 title = {Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy}, 18437 pages = {282-301}, 18438 journal = {IEEE Transactions on Medical Imaging}, 18439 volume = {29}, 18440 author = {Smal, I. and Loog, M. and Niessen, W.J. and Meijering, E.} 18441 } 18442 @article{Akhmanova2008, 18443 year = {2008}, 18444 title = {Tracking the ends: a dynamic protein network controls the fate of microtubule tips}, 18445 pages = {309-322}, 18446 journal = {Nature Reviews Molecular Cell Biology}, 18447 volume = {9}, 18448 author = {Akhmanova, A. and Steinmetz, M.O.} 18449 } 18450 @article{Heuvel2008, 18451 year = {2008}, 18452 title = {Single-Molecule Observation of Anomalous Electrohydrodynamic Orientation of Microtubules 18453 }, 18454 pages = {118301}, 18455 journal = {Physical Review Letters}, 18456 volume = {101}, 18457 author = {Heuvel, M.G.L. van den and Bondesan, R. and Cosentino Langomarsino, M. and Dekker, C.} 18458 } 18459 @article{Lupini2008, 18460 number = {6}, 18461 year = {2008}, 18462 title = {Rapid autotuning for crystalline specimens from an inline hologram}, 18463 pages = {195-201}, 18464 journal = {Journal of Electron Microscopy}, 18465 volume = {57}, 18466 author = {Lupini, A.R. and Pennycook, S.J.} 18467 } 18468 @article{Hell2009a, 18469 year = {2009}, 18470 title = {Diffraction-unlimited three-dimensional optical 18471 nanoscopy with opposing lenses}, 18472 pages = {381-387}, 18473 journal = {Nature Photonics}, 18474 volume = {3}, 18475 author = {Hell, S.W. and Schmidt, R. and Egner, A.} 18476 } 18477 @article{Manghi2010, 18478 year = {2010}, 18479 title = {Probing {DNA} conformational changes 18480 with high temporal resolution by tethered 18481 particle motion}, 18482 pages = {046003}, 18483 journal = {Physical Biology}, 18484 volume = {7}, 18485 author = {Manghi, M. and Tardin, C. and Baglio, J. and Rousseau, P. and Salome, L. and Destainville, N.} 18486 } 18487 @article{Destainville2009, 18488 number = {11}, 18489 year = {2009}, 18490 title = {Microscopic Mechanism for Experimentally Observed Anomalous Elasticity of DNA in Two Dimensions}, 18491 pages = {4464-4469}, 18492 journal = {Biophysical Journal}, 18493 volume = {96}, 18494 author = {Destainville, Nicolas and Manghi, Manoel and Palmeri, John} 18495 } 18496 @article{Barthel2010, 18497 year = {2010}, 18498 title = {Aberration measurement in {HRTEM}: {Implementation} and diagnostic use of numerical procedures for the highly precise recognition of diffractogram patterns}, 18499 pages = {27-46}, 18500 journal = {Ultramicroscopy}, 18501 volume = {111}, 18502 author = {Barthel, J. and Thust, A.} 18503 } 18504 @article{Perfetti2010, 18505 year = {2010}, 18506 title = {X-ray micro tomography and image analysis as complementary methods for morphological characterization and coating thickness measurement 18507 of coated particles}, 18508 pages = {663-675}, 18509 journal = {Advanced Powder Technology}, 18510 volume = {21}, 18511 author = {Perfetti, G. and Casteele, E. van de and Rieger, B. and Wildeboer, W.J. and Meesters, G.M.H.} 18512 } 18513 @article{Stallinga2005, 18514 year = {2005}, 18515 title = {Compact description of substrate-related aberrations in high numerical aperture optical disk readout}, 18516 pages = {949-958}, 18517 journal = {Applied Optics}, 18518 volume = {44}, 18519 author = {Stallinga, S.} 18520 } 18521 @article{Muhlich2009, 18522 number = {7}, 18523 year = {2009}, 18524 title = {Analysis of Multiple Orientations}, 18525 pages = {1424-1437}, 18526 journal = {IEEE Transactions on Image Processing}, 18527 volume = {18}, 18528 author = {M{\"u}hlich, M. and Aach, T.} 18529 } 18530 @inproceedings{Franken2007, 18531 series = {4485}, 18532 year = {2007}, 18533 title = {Nonlinear diffusion on the 2D Euclidean Motion group}, 18534 booktitle = {LNCS}, 18535 pages = {461-472}, 18536 author = {Franken, E.M. and Duits, R. and Haar Romenij, B.M. ter} 18537 } 18538 @inproceedings{Franken2006, 18539 series = {3954}, 18540 year = {2006}, 18541 title = {An Efficient Method for Tensor Voting using Steerable Filters}, 18542 booktitle = {LNCS}, 18543 pages = {228-240}, 18544 author = {Franken, E.M. and Almsick, M.A. van and Rongen, P.M.J. and Florack, L.M.J. and Haar Romenij, B.M. ter} 18545 } 18546 @inproceedings{Faas2007, 18547 series = {4678}, 18548 year = {2007}, 18549 title = {A crossing detector based on the structure tensor}, 18550 booktitle = {LNCS}, 18551 pages = {212-220}, 18552 editor = {Blanc-Talon, J.}, 18553 author = {Faas, F.G.A. and Vliet, L.J. van} 18554 } 18555 @inproceedings{Herberthsson2006, 18556 series = {SSBA}, 18557 month = {March}, 18558 year = {2006}, 18559 title = {Pairs of Orientation in the Plane}, 18560 booktitle = {Proceedings of the {SSBA} Symposium on Image Analysis}, 18561 author = {Herberthsson, M. and Brun, A. and Knutsson, H.} 18562 } 18563 @book{Stein1971, 18564 year = {1971}, 18565 title = {Introduction to Fourier Analysis on Euclidean Spaces}, 18566 publisher = {Princeton University Press}, 18567 author = {Stein, E. and Stein, E.M. and Weiss, G.} 18568 } 18569 @article{Cordes2010a, 18570 year = {2010}, 18571 title = {Resolving Single-Molecule Assembled Patterns with Superresolution Blink-Microscopy}, 18572 pages = {645-651}, 18573 journal = {Nano Letters}, 18574 volume = {10}, 18575 author = {Cordes, T. and Strackharn, M. and Stahl, S.W. and Summerer, W. and Steinhauer, C. and Forthmann, C. and Puchner, E.M. and Vogelsang, J. and Gaub H.E. and Tinnefeld, P.} 18576 } 18577 @article{Luengo2010, 18578 number = {6}, 18579 year = {2010}, 18580 title = {Constrained and Dimensionality-Independent Path Openings}, 18581 pages = {1587-1595}, 18582 journal = {IEEE Transactions on Image Processing}, 18583 volume = {19}, 18584 author = {Luengo Hendriks, C.L.} 18585 } 18586 @article{Luengo2007a, 18587 year = {2007}, 18588 title = {Improving the accuracy of isotropic granulometries}, 18589 pages = {865-872}, 18590 journal = {Pattern Recognition Letters}, 18591 volume = {28}, 18592 author = {Luengo Hendriks, C.L. and Kempen, G.M.P. and Vliet, L.J. van} 18593 } 18594 @article{Luengo2007, 18595 number = {19}, 18596 year = {2007}, 18597 title = {Automatic channel unmixing for high-throughput quantitative analysis of fluorescence images}, 18598 pages = {12306-123117}, 18599 journal = {Optics Express}, 18600 volume = {15}, 18601 author = {Luengo Hendriks, C.L. and {Ker\"a}nen, S.V.E. and Biggin, M.D. and Knowles, D.W.} 18602 } 18603 @article{Caarls2010, 18604 year = {2010}, 18605 title = {Characterization of Coupled Ground State and Excited State Equilibria by Fluorescence Spectral Deconvolution}, 18606 pages = {181-190}, 18607 journal = {Journal of Fluorescence}, 18608 volume = {20}, 18609 author = {Caarls, W. and Celej, M.S. and Demchenko, A.P. and Jovin, T.M.} 18610 } 18611 @article{Celej2009, 18612 year = {2009}, 18613 title = {A Triple-Emission Fluorescent Probe Reveals Distinctive Amyloid Fibrillar Polymorphism of Wild-Type R-Synuclein and Its Familial Parkinson's Disease Mutants}, 18614 pages = {7465-7472}, 18615 journal = {Biochemistry}, 18616 volume = {48}, 18617 author = {Celej, M.S. and Caarls, W. and Demchenko, A.P. and Jovin, T.M.} 18618 } 18619 @article{Nagy2010, 18620 number = {38}, 18621 year = {2010}, 18622 title = {Distribution of resting and ligand-bound {ErbB1} and {ErbB2} receptor tyrosine kinases in living cells using number and brightness analysis}, 18623 pages = {16524-16529}, 18624 journal = {Proceedings of the National Academy of Sciences of the United States of America}, 18625 volume = {107}, 18626 author = {Nagy, P. and Claus, J. and Jovin, T.M. and Arndt-Jovin, D.J.} 18627 } 18628 @article{Finzi2010, 18629 number = {25}, 18630 year = {2010}, 18631 title = {Single-molecule Approaches to Probe the Structure, Kinetics, and Thermodynamics of Nucleoprotein Complexes That Regulate Transcription}, 18632 pages = {18973-18978}, 18633 journal = {JOURNAL OF BIOLOGICAL CHEMISTRY}, 18634 volume = {285}, 18635 author = {Finzi, L. and Dunlap, D.D.} 18636 } 18637 @article{Engelhardt2011, 18638 year = {2010}, 18639 title = {Molecular Orientation Affects Localization Accuracy in Superresolution Far-Field Fluorescence Microscopy}, 18640 pages = {209-213}, 18641 journal = {Nano Letters}, 18642 volume = {11}, 18643 author = {Engelhardt, J. and Keller, J. and Hoyer, P. and Reuss, M. and Staudt, T. and Hell, S.W.} 18644 } 18645 @article{Lindner2011, 18646 year = {2011}, 18647 title = {Force-free measurements of the conformations of {DNA} molecules tethered to a wall}, 18648 pages = {011916}, 18649 journal = {Physical Review E}, 18650 volume = {83}, 18651 author = {Lindner, M. and Nir, G. and Medalion, S. and Dietrich, H.R.C. and Rabin, Y. and Garini, Y.} 18652 } 18653 @article{Beleggia2004, 18654 year = {2004}, 18655 title = {On the transport of intensity technique for phase retrieval}, 18656 pages = {37-49}, 18657 journal = {Ultramicroscopy}, 18658 volume = {102}, 18659 author = {Beleggia, M. and Schofield, M.A. and Volkov, V.V. and Zhu, Y.} 18660 } 18661 @article{Bronnikov2002, 18662 year = {2002}, 18663 title = {Theory of quatitative phase-contrast computed tomography}, 18664 pages = {472-480}, 18665 journal = {Journal of the Optical Society of America A}, 18666 volume = {19}, 18667 author = {Bronnikov, A.V.} 18668 } 18669 @article{Donoho2006, 18670 number = {4}, 18671 year = {2006}, 18672 title = {Compressed Sensing}, 18673 pages = {1289-1306}, 18674 journal = {IEEE Transactions of Information Theory}, 18675 volume = {52}, 18676 author = {Donoho, D.L.} 18677 } 18678 @article{Jesacher2005, 18679 year = {2005}, 18680 title = {Shadow Effects in Spiral Phase Contrast Microscopy}, 18681 pages = {233902}, 18682 journal = {Physics Review Letters}, 18683 volume = {94}, 18684 author = {Jesacher, A. and {F\"urhapter}, S. and Bernet, S. and Ritsch-Marte, M.} 18685 } 18686 @article{Furhapter2005, 18687 number = {15}, 18688 year = {2005}, 18689 title = {Spiral interferometry}, 18690 pages = {1953-1955}, 18691 journal = {Optics Letters}, 18692 volume = {30}, 18693 author = {{F\"urhapter}, S. and Jesacher, A. and Bernet, S. and Ritsch-Marte, M.} 18694 } 18695 @article{Aarts2011, 18696 year = {2011}, 18697 title = {Three-dimensional atomic imaging of crystalline 18698 nanoparticles}, 18699 journal = {Nature}, 18700 author = {Aaarts, S. van and Batenburg, K.J. and Rossell, M.D. and Erni, R. and Tendeloo, G. van} 18701 } 18702 @article{jensen_helium, 18703 year = {2006}, 18704 title = {A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography}, 18705 pages = {231-240}, 18706 journal = {Journal of Structural Biology}, 18707 volume = {153}, 18708 author = {Iancu, C.V. and Wright, E.R. and Heymann, J.B. and Jensen, G.J.} 18709 } 18710 @inproceedings{Noorden2010, 18711 series = {LNCS 6362}, 18712 month = {September 20-24}, 18713 year = {2010}, 18714 title = {A Comparison of the Cingulum in Amyotrophic Lateral Sclerosis using Kernel Matchin}, 18715 booktitle = {Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010}, 18716 pages = {249-256}, 18717 editor = {T. Jiang, T. and Navab, N. and Pluim, J.P.W. and Viergever, M.A.}, 18718 address = {Beijing, China}, 18719 publisher = {Springer}, 18720 author = {Noorden, S. van and Caan, M.W.A. and Graaf, M. van der and Vliet, L.J. van and Vos, F.M.} 18721 } 18722 @article{McMorran2011, 18723 year = {2011}, 18724 title = {Electron Vortex Beams with High Quanta of Orbital Angular Momentum}, 18725 pages = {192-195}, 18726 journal = {Science}, 18727 volume = {331}, 18728 author = {McMorran, B.J. and Agrawal, A. and Anderson, I.M. and Herzing, A.A. and Lezec, H.J. and McClelland, J.J. and unguris, J.} 18729 } 18730 @article{Voortman2011, 18731 year = {2011}, 18732 title = {A fast algorithm for computing and correcting the 18733 {CTF} for tilted, thick specimens in {TEM}}, 18734 pages = {1029-1036}, 18735 journal = {Ultramicroscopy}, 18736 volume = {111}, 18737 author = {Voortman, L.M. and Stallinga, S. and Schoenmakers, R.H.M. and Vliet, L.J. van and Rieger, B.} 18738 } 18739 @article{Karuppasamy2011, 18740 year = {2011}, 18741 title = {Radiation damage in single-particle cryo-electron 18742 microscopy: effects of dose and dose rate}, 18743 pages = {398-412}, 18744 journal = {Journal of Synchrotron Radiation}, 18745 volume = {18}, 18746 author = {Karuppasamy, M. and Karimi Nejadasl, F and Vulovic, M. and Koster, A.J. and Ravelli, R.B.G. } 18747 } 18748 @article{Krysting2011, 18749 year = {2011}, 18750 title = {Heat Profiling of Three-Dimensionally Optically Trapped Gold Nanoparticles using Vesicle Cargo Release}, 18751 pages = {888-892}, 18752 journal = {Nano Letters}, 18753 volume = {11}, 18754 author = {Krysting, A. and Bendix, P.M. and Stamou, D.G. and Oddershede, L.B.} 18755 } 18756 @article{Schutz2001, 18757 number = {2}, 18758 year = {2001}, 18759 title = {Imaging Single Molecules in Three Dimensions}, 18760 pages = {69-74}, 18761 journal = {Single Molecules}, 18762 volume = {2}, 18763 author = {{Sch\"utz}, G.J. and Axman M. and Schindler, H.} 18764 } 18765 @article{vanElburg2007, 18766 number = {1}, 18767 year = {2007}, 18768 title = {Improved correction of axial geometrical distortion in index-mismatched fluorescent confocal microscopic images using high-aperture objective lenses}, 18769 pages = {45-54}, 18770 journal = {Journal of Microscopy}, 18771 volume = {228}, 18772 author = {van Elburg, H.J. and Kuypers, L.C. and Decraemer, W.F. and Dirckx, J.J.J.} 18773 } 18774 @article{vandenBroek2006, 18775 number = {1}, 18776 year = {2006}, 18777 title = {Real-time observation of {DNA} looping dynamics of Type {IIE} restriction enzymes {NaeI} and {NarI}}, 18778 pages = {167-174}, 18779 journal = {Nucleic Acids Research}, 18780 volume = {34}, 18781 author = {van den Broek, B. and Vanzi, F. and Normanno, D. and Pavone, F.S. and Wuite, G.J.L.} 18782 } 18783 @article{Finzi1995, 18784 number = {5196}, 18785 year = {1995}, 18786 title = {Measurement of Lactose Repressor-Mediated Loop Formation and Breakdown in Single DNA Molecules}, 18787 pages = {378-380}, 18788 journal = {Science}, 18789 volume = {267}, 18790 author = {Finzi, L. and Gelles, J.} 18791 } 18792 @article{deGennes1976a, 18793 number = {4}, 18794 year = {1976}, 18795 title = {Dynamics of Entangled Polymer Solutions. {I.} The Rouse Model}, 18796 pages = {587-593}, 18797 journal = {Macromolecules}, 18798 volume = {9}, 18799 author = {De Gennes, P.G.} 18800 } 18801 @article{deGennes1976b, 18802 number = {4}, 18803 year = {1976}, 18804 title = {Dynamics of Entangled Polymer Solutions. {II.} Inclusion of Hydrodynamic Interactions}, 18805 pages = {594-598}, 18806 journal = {Macromolecules}, 18807 volume = {9}, 18808 author = {De Gennes, P.G.} 18809 } 18810 @article{Robertson2006, 18811 number = {19}, 18812 year = {2006}, 18813 title = {Diffusion of isolated DNA molecules: {Dependence} on length and topology}, 18814 pages = {7310-7314}, 18815 journal = {Proceedings of the National Academy of Sciences of the USA}, 18816 volume = {103}, 18817 author = {Robertson, R.M.} 18818 } 18819 @article{Derjaguin1941, 18820 year = {1941}, 18821 title = {Theory of the stability of strongly charged lyophobic sols and of the adhesion of strongly charged particles in solutions of electrolytes.}, 18822 journal = {Acta Physico Chimica URSS}, 18823 volume = {14}, 18824 author = {Derjaguin, B. and Landau, L.} 18825 } 18826 @book{Verwey1948, 18827 year = {1948}, 18828 title = {Theory of the stability of lyophobic colloids}, 18829 publisher = {Elsevier}, 18830 author = {Verwey, E.J.W. and Overbeek, J.Th.G.} 18831 } 18832 @article{Debye1923, 18833 year = {1923}, 18834 title = {The theory of electrolytes. {I.} Lowering of freezing point and related phenomena}, 18835 pages = {185-206}, 18836 journal = {Physikalische Zeitschrift}, 18837 volume = {24}, 18838 author = {Debye, P. and {H\"uckel}, E.} 18839 } 18840 @book{Lyklema1991, 18841 year = {1991}, 18842 title = {Fundamentals of Interface and Colloid Science}, 18843 volume = {Volume I: Fundamentals}, 18844 address = {London, UK}, 18845 publisher = {Academic Press Limited}, 18846 author = {Lyklema, J. and van Leeuwen, H.P. and van Vliet, T. and Cazabat, A.-M} 18847 } 18848 @book{Happel1973, 18849 edition = {2nd edition}, 18850 year = {1973}, 18851 title = {Low Reynolds number hydrodynamics}, 18852 address = {Leyden, The Netherlands}, 18853 publisher = {Noordhoff}, 18854 author = {Happel, John} 18855 } 18856 @article{Bevan2000, 18857 number = {3}, 18858 year = {2000}, 18859 title = {Hindered diffusion of colloidal particles very near to a wall: Revisited}, 18860 pages = {1128-1236}, 18861 journal = {Journal of Chemical Physics}, 18862 volume = {113}, 18863 author = {Bevan, Michael A. and Prieve, Dennis C.} 18864 } 18865 @article{Stallinga2005a, 18866 year = {2005}, 18867 title = {Finite conjugate spherical aberration compensation in high numerical-aperture optical disc read-out}, 18868 pages = {7307-7312}, 18869 journal = {Applied Optics}, 18870 volume = {44}, 18871 author = {Stallinga, S.} 18872 } 18873 @article{Fan2009, 18874 number = {5}, 18875 year = {2009}, 18876 title = {Studying {RecBCD} Helicase Translocation Along {chi-DNA} Using Tethered Particle Motion with a Stretching Force}, 18877 pages = {1875-1883}, 18878 journal = {Biophysical Journal}, 18879 volume = {96}, 18880 author = {Fan, Hsiu-Fang and Li, Hung-Wen} 18881 } 18882 @article{Geggier2010, 18883 number = {35}, 18884 year = {2010}, 18885 title = {Sequence dependence of {DNA} bending rigidity}, 18886 pages = {15421-15426}, 18887 journal = {Proceedings of the National Academy of Sciences of the USA}, 18888 volume = {107}, 18889 author = {Geggier, Stephanie and Vologodskii, Alexander} 18890 } 18891 @article{Smith1996b, 18892 number = {4}, 18893 year = {1996}, 18894 title = {Dynamical Scaling of {DNA} Diffusion Coefficients}, 18895 pages = {1372-1373}, 18896 journal = {Macromolecules}, 18897 volume = {29}, 18898 author = {Smith, Douglas E. and Perkins, Thomas T. and Chu, Steven} 18899 } 18900 @article{Hodgson1991, 18901 number = {10}, 18902 year = {1991}, 18903 title = {Dilute solution behavior of cyclic and linear polyelectrolytes}, 18904 pages = {7653-7663}, 18905 journal = {Journal of Chemical Physics}, 18906 volume = {95}, 18907 author = {Hodgson, Donald F. and Amis, Eric J.} 18908 } 18909 @inproceedings{Rieger2011, 18910 series = {LNCS 6688}, 18911 month = {May 23-27}, 18912 year = {2011}, 18913 title = {Continuous orientation representation for arbitrary dimensions - a generalized Knutsson mapping}, 18914 booktitle = {Proceedings of the 17th Scandinavian Conference on Image Analysis, SCIA 2011}, 18915 pages = {774-783}, 18916 editor = {Heyden, A. and Kahl, F.}, 18917 address = {Heidelberg}, 18918 publisher = {Springer}, 18919 author = {Rieger, B. and Vliet, L.J. van and Verbeek, P.W.} 18920 } 18921 @book{FundFluidMech, 18922 edition = {3rd}, 18923 year = {1998}, 18924 title = {Fundamentals of Fluid Mechanics}, 18925 address = {New York}, 18926 publisher = {John Wiley \& Sons, Inc}, 18927 author = {Munson, Bruce R. and Young, Donald F. and Okiishi, Theodore H.} 18928 } 18929 @article{Rosenthal2003, 18930 number = {4}, 18931 year = {2003}, 18932 title = {Optimal Determination of Particle Orientation, 18933 Absolute Hand, and Contrast Loss in Single-particle Electron Cryomicroscopy}, 18934 pages = {721-745}, 18935 journal = {Journal of Molecular Biology}, 18936 volume = {333}, 18937 author = {Rosenthal, P.B. and Henderson, R.} 18938 } 18939 @article{Wicker2009, 18940 number = {18}, 18941 year = {2009}, 18942 title = {Characterisation of a resolution enhancing image inversion interferometer}, 18943 pages = {15491-15501}, 18944 journal = {Optics Express}, 18945 volume = {17}, 18946 author = {Wicker, K. and Sindbert, S. and Heintzmann, R.} 18947 } 18948 @article{Wicker2007, 18949 number = {19}, 18950 year = {2007}, 18951 title = {Interferometric resolution improvement for confocal microscopes}, 18952 pages = {12206-12216}, 18953 journal = {Optics Express}, 18954 volume = {15}, 18955 author = {Wicker, K. and Heintzmann, R.} 18956 } 18957 @article{Schermelleh2010, 18958 number = {2}, 18959 year = {2010}, 18960 title = {A guide to super-resolution fluorescence microscopy}, 18961 pages = {165-175}, 18962 journal = {The journal of cell biology}, 18963 volume = {190}, 18964 author = {Schermelleh, L. and Heintzmann, R. and Leonhardt, H.} 18965 } 18966 @article{Ruckstuhl2004, 18967 number = {18}, 18968 year = {2004}, 18969 title = {Supercritical angle fluorescence {(SAF)} microscopy}, 18970 pages = {4246-4254}, 18971 journal = {Optics Express}, 18972 volume = {12}, 18973 author = {Ruckstuhl, T. and Verdes, D.} 18974 } 18975 @article{Rohrbach2009, 18976 number = {19}, 18977 year = {2009}, 18978 title = {Artifacts resulting from imaging in scattering media: a theoretical prediction}, 18979 pages = {3041-3043}, 18980 journal = {Optics Letters}, 18981 volume = {34}, 18982 author = {Rohrbach, A.} 18983 } 18984 @article{Murdy2010, 18985 year = {2010}, 18986 title = {Isotropic Diffraction-Limited Focusing Using a Single Objective Lens}, 18987 pages = {203903}, 18988 journal = {Physical Review Letters}, 18989 volume = {105}, 18990 author = {Murdy, E. and Moral, E. le and Ferrand, P. and Chaumet, P.C. and Sentenac, A. } 18991 } 18992 @article{Min2009, 18993 number = {22}, 18994 year = {2009}, 18995 title = {Imaging chromophores with undetectable fluorescence by stimulated emission microscopy}, 18996 pages = {1105-1109}, 18997 journal = {Nature}, 18998 volume = {461}, 18999 author = {Min, W. and Lu, S. and Chong, S. and Roy, R. and Holtom, G.R. and Xie, X.S.} 19000 } 19001 @inbook{Manley2010, 19002 series = {Methods in Enzymology}, 19003 year = {2010}, 19004 title = {Single-Particle Tracking Photoactivated Localization 19005 Microscopy for Mapping Single-Molecule Dynamics}, 19006 pages = {109-120}, 19007 volume = {475}, 19008 chapter = {5}, 19009 publisher = {Elsevier}, 19010 author = {Manely, S. and Gillette, J.M. and Lippincott-Schwartz, J.} 19011 } 19012 @article{Luisier2007, 19013 number = {3}, 19014 year = {2007}, 19015 title = {A New {SURE} Approach to Image Denoising: 19016 Interscale Orthonormal Wavelet Thresholding}, 19017 pages = {593-606}, 19018 journal = {IEEE Transactions on Image Processing}, 19019 volume = {16}, 19020 author = {Luisier, F. and Blu, T. and Unser, M.} 19021 } 19022 @article{Krizek2011, 19023 number = {4}, 19024 year = {2011}, 19025 title = {Minimizing detection errors in single molecule localization microscopy}, 19026 pages = {3226-3235}, 19027 journal = {Optics Express}, 19028 volume = {19}, 19029 author = {Krizek, P. and Raska, I. and Hagen, G.M} 19030 } 19031 @article{Kaufmann2011a, 19032 year = {2011}, 19033 title = {Imaging label-free intracellular structures by localisation microscopy}, 19034 pages = {348-352}, 19035 journal = {Micron}, 19036 volume = {42}, 19037 author = {Kaufmann, R. and {M\"uller}, P. and Hausmann, M. and Cremer, C.} 19038 } 19039 @article{Kaufmann2011, 19040 number = {1}, 19041 year = {2011}, 19042 title = {Analysis of {Her2/neu} membrane protein clusters in different types of breast cancer cells using localization microscopy}, 19043 pages = {46-54}, 19044 journal = {Journal of Microscopy}, 19045 volume = {242}, 19046 author = {Kaufmann, R. and {M\"uller}, P. and Hildenbrand, G. and Hausmann, M. and Cremer, C.} 19047 } 19048 @article{Fujita2007, 19049 year = {2007}, 19050 title = {High-Resolution Confocal Microscopy by Saturated Excitation of Fluorescence}, 19051 pages = {228105}, 19052 journal = {Physical Review Letters}, 19053 volume = {99}, 19054 author = {Fujita, K. and Kobayashi, M. and Kawano, S. and YTamanaka, M. and Kawata, S.} 19055 } 19056 @article{Fahrbach2010, 19057 year = {2010}, 19058 title = {Microscopy with self-reconstructing beams}, 19059 note = {DOI: 10.1038/NPHOTON.2010.204}, 19060 journal = {Nature photonics}, 19061 author = {Fahrbach, F.O. and Simon, P. and Rohrbach, A.} 19062 } 19063 @article{Debarre2007, 19064 number = {13}, 19065 year = {2007}, 19066 title = {Image based adaptive optics through optimisation of low spatial frequencies}, 19067 pages = {8176-8190}, 19068 journal = {Optics Express}, 19069 volume = {15}, 19070 author = {Debarre, D. and Booth, M.J. and Wilson, T.} 19071 } 19072 @article{Cox2004, 19073 year = {2004}, 19074 title = {Practical Limits of Resolution in Confocal and Non-Linear Microscopy}, 19075 pages = {18-22}, 19076 journal = {MICROSCOPY RESEARCH AND TECHNIQUE}, 19077 volume = {63}, 19078 author = {Cox, G. and Sheppard, C.J.R.} 19079 } 19080 @article{Cox1982, 19081 number = {5}, 19082 year = {1982}, 19083 title = {Improvement in resolution by nearly confocal microscopy}, 19084 pages = {778-781}, 19085 journal = {Applied Optics}, 19086 volume = {21}, 19087 author = {Cox, I.J. and Sheppard, C.J.R. and Wilson, T.} 19088 } 19089 @article{Dobrucki2007, 19090 year = {2007}, 19091 title = {Scattering of Exciting Light by Live Cells in Fluorescence Confocal Imaging: Phototoxic Effects and Relevance for {FRAP} Studies}, 19092 pages = {1778-1786}, 19093 journal = {Biophysical Journal}, 19094 volume = {93}, 19095 author = {Dobrucki, J.W. and Feret, D. and Noatynska, A.} 19096 } 19097 @phdthesis{Wicker2010, 19098 month = {October}, 19099 year = {2010}, 19100 title = {Increasing resolution and light efficiency 19101 in fluorescence microscopy}, 19102 address = {United Kingdom}, 19103 school = {King's College London}, 19104 author = {Wicker, K.} 19105 } 19106 @article{PoissonNoise, 19107 number = {1}, 19108 year = {1965}, 19109 title = {Noise in Photoemission Current}, 19110 pages = {79-80}, 19111 journal = {Applied Optics}, 19112 volume = {4}, 19113 author = {Fried, D.L.} 19114 } 19115 @article{Kiel2007, 19116 year = {2007}, 19117 title = {Direct Monitoring of Formation and Dissociation of Individual Metal Complexes by Single-Molecule Fluorescence Spectroscopy}, 19118 pages = {3363-3366}, 19119 journal = {Angewandte Chemie Interational Edition}, 19120 volume = {46}, 19121 author = {Kiel, A. and Kovacs, J. and Mokhir, A. and {Kr\"amer}, R. and Herten, D.-P.} 19122 } 19123 @article{Schwering2011, 19124 year = {2011}, 19125 title = {Far-Field Nanoscopy with Reversible Chemical Reactions}, 19126 pages = {2940-2945}, 19127 journal = {Angewandte Chemie International Edition}, 19128 volume = {50}, 19129 author = {Schwering, M. and Kiel, A. and Kurz, A. and Lymperopoulos,K. and {Spr\"odefeld}, A. and {Kr\"amer}, R. and Herten, D.-P. } 19130 } 19131 @article{Rossow2010, 19132 number = {11}, 19133 year = {2010}, 19134 title = {Raster image correlation spectroscopy in live cells}, 19135 pages = {1761-1773}, 19136 journal = {Nature Protocols}, 19137 volume = {5}, 19138 author = {Rossow, M.J. and Sasaki, J.M. and Digmann, M.A. and Gratton, E.} 19139 } 19140 @inproceedings{Knutsson1987, 19141 month = {September}, 19142 year = {1987}, 19143 title = {A tensor representation of 3-D structure}, 19144 booktitle = {5th IEEE-ASSP and EURASIP Workshop on Multidimensional Signal Processing}, 19145 address = {Noorwijkerhoudt, Netherlands}, 19146 author = {Knutsson, H.} 19147 } 19148 @inproceedings{Serino2011, 19149 series = {Lecture Notes in Computer Science 6688}, 19150 year = {2011}, 19151 title = {Using the Skeleton for 3D Object Decomposition}, 19152 booktitle = {Image Analysis}, 19153 pages = {447-456}, 19154 editor = {Heyden, A. and Kahl, F.}, 19155 address = {Heidelberg}, 19156 publisher = {Springer}, 19157 author = {Serino, L. and Sanniti di Baja, G. and Arcelli, C.} 19158 } 19159 @inproceedings{Schlager2011, 19160 series = {Lecture Notes in Computer Science 6688}, 19161 year = {2011}, 19162 title = {Coherence Probe Microscopy Imaging and 19163 Analysis for Fiber-Reinforced Polymers}, 19164 booktitle = {Image Analysis}, 19165 pages = {424-434}, 19166 editor = {Heyden, A. and Kahl, F.}, 19167 address = {Heidelberg}, 19168 publisher = {Springer}, 19169 author = {Schlager1, V. and Schausberger, S.E. and Stifter, D. and Heise1, B.} 19170 } 19171 @inproceedings{Malmberg2011, 19172 series = {Lecture Notes in Computer Science 6688}, 19173 year = {2011}, 19174 title = {Generalized Hard Constraints for Graph 19175 Segmentation}, 19176 booktitle = {Image Analysis}, 19177 pages = {36-47}, 19178 editor = {Heyden, A. and Kahl, F.}, 19179 address = {Heidelberg}, 19180 publisher = {Springer}, 19181 author = {Malmberg, F. and Strand, R. and {Nystr\"om}, I.} 19182 } 19183 @inproceedings{Larsson2011, 19184 series = {Lecture Notes in Computer Science 6688}, 19185 year = {2011}, 19186 title = {Using Fourier Descriptors and Spatial Models 19187 for Traffic Sign Recognition}, 19188 booktitle = {Image Analysis}, 19189 pages = {238-249}, 19190 editor = {Heyden, A. and Kahl, F.}, 19191 address = {Heidelberg}, 19192 publisher = {Springer}, 19193 author = {Larsson, F. and Felsberg, M.} 19194 } 19195 @inproceedings{Landstrom2011, 19196 series = {Lecture Notes in Computer Science 6688}, 19197 year = {2011}, 19198 title = {Image Reconstruction by Prioritized 19199 Incremental Normalized Convolution}, 19200 booktitle = {Image Analysis}, 19201 pages = {176-185}, 19202 editor = {Heyden, A. and Kahl, F.}, 19203 address = {Heidelberg}, 19204 publisher = {Springer}, 19205 author = {{Landstr\"om}, A. and Nellros, F. and Jonsson, H. and Thurley, M.} 19206 } 19207 @inproceedings{Knutsson2011, 19208 series = {Lecture Notes in Computer Science 6688}, 19209 year = {2011}, 19210 title = {Representing Local Structure Using Tensors {II}}, 19211 booktitle = {Image Analysis}, 19212 pages = {545-556}, 19213 editor = {Heyden, A. and Kahl, F.}, 19214 address = {Heidelberg}, 19215 publisher = {Springer}, 19216 author = {Knutsson, H. and Westin, C.-F. and Andersson, M.} 19217 } 19218 @inproceedings{Josth2011, 19219 series = {Lecture Notes in Computer Science 6688}, 19220 year = {2011}, 19221 title = {Real-Time Line Detection Using Accelerated 19222 High-Resolution Hough Transform}, 19223 booktitle = {Image Analysis}, 19224 pages = {784-793}, 19225 editor = {Heyden, A. and Kahl, F.}, 19226 address = {Heidelberg}, 19227 publisher = {Springer}, 19228 author = {Josth, R. and Dubska, M. and Herout, A. and Havel, J.} 19229 } 19230 @inproceedings{Eklund2011, 19231 series = {Lecture Notes in Computer Science 6688}, 19232 year = {2011}, 19233 title = {Using the Local Phase of the Magnitude of the 19234 Local Structure Tensor for Image Registration}, 19235 booktitle = {Image Analysis}, 19236 pages = {414-423}, 19237 editor = {Heyden, A. and Kahl, F.}, 19238 address = {Heidelberg}, 19239 publisher = {Springer}, 19240 author = {Eklund, A. and Forsberg, D. and Andersson, M. and Knutsson, H.} 19241 } 19242 @inproceedings{Astrom2011, 19243 series = {Lecture Notes in Computer Science 6688}, 19244 year = {2011}, 19245 title = {Color Persistent Anisotropic Diffusion of Images}, 19246 booktitle = {Image Analysis}, 19247 pages = {262-272}, 19248 editor = {Heyden, A. and Kahl, F.}, 19249 address = {Heidelberg}, 19250 publisher = {Springer}, 19251 author = {{\AAstr\"om}, F. and Felsberg, M. and Lenz, R.} 19252 } 19253 @article{Unser2011, 19254 number = {11}, 19255 year = {2011}, 19256 title = {Multiresolution Monogenic Signal Analysis Using 19257 the {Riesz-Laplace} Wavelet Transform}, 19258 pages = {2402-2418}, 19259 journal = {IEEE TRANSACTIONS ON IMAGE PROCESSING}, 19260 volume = {18}, 19261 author = {Unser, M. and Sage, D. and Ville, D. van de} 19262 } 19263 @article{Frank1976, 19264 year = {1975}, 19265 title = {Signal to noise ratio of electron micrographs obtained by cross correlation}, 19266 pages = {376-379}, 19267 journal = {Nature}, 19268 volume = {256}, 19269 author = {Frank, J. and Al-Ali, L.} 19270 } 19271 @article{Patra2005, 19272 year = {2005}, 19273 title = {Defocused imaging of quantum-dot angular distribution of radiation}, 19274 pages = {101103}, 19275 journal = {Applied Physics Letters}, 19276 volume = {87}, 19277 author = {Patra, D. and Gergor, I. and Enderlein, J.} 19278 } 19279 @article{Toprak2006, 19280 number = {17}, 19281 year = {2006}, 19282 title = {Defocused orientation and position imaging 19283 {(DOPI)} of myosin {V}}, 19284 pages = {6495-6499}, 19285 journal = {Proceedings of the National Academy of Sciences USA}, 19286 volume = {103}, 19287 author = {Toprak, E. and Enderlein, J. and Syed, S. and McKinney, S.A. and Petschek, R.G. and Ha, T. and Goldman, Y.E. and Selvin, P.R.} 19288 } 19289 @article{Geissbuehler2011, 19290 number = {3}, 19291 year = {2011}, 19292 title = {Comparison between {SOFI} and {STORM}}, 19293 pages = {408-420}, 19294 journal = {BIOMEDICAL OPTICS EXPRESS}, 19295 volume = {2}, 19296 author = {Geissbuehler, S. and Dellagiacoma, C. and Lasser, T.} 19297 } 19298 @article{Enderlein2005, 19299 year = {2005}, 19300 title = {Performance of Fluorescence Correlation 19301 Spectroscopy for Measuring Diffusion and 19302 Concentration}, 19303 pages = {2324-2336}, 19304 journal = {ChemPhysChem}, 19305 volume = {6}, 19306 author = {Enderlein, J. and Gregor, I. and Patra, D. and Dertinger, T. and Kaupp, U.B.} 19307 } 19308 @article{Dertinger2007, 19309 year = {2007}, 19310 title = {Two-Focus Fluorescence Correlation 19311 Spectroscopy: A New Tool for Accurate and 19312 Absolute Diffusion Measurements}, 19313 pages = {433-443}, 19314 journal = {ChemPhysChem}, 19315 volume = {8}, 19316 author = {Dertinger, T. and Pacheco, V. and Hocht, I. van der and Hartmann, R. and Gregor, I. and Enderlein, J.} 19317 } 19318 @article{Pusey2011, 19319 year = {2011}, 19320 title = {Brownian Motion Goes Ballistic}, 19321 pages = {802-803}, 19322 journal = {Science}, 19323 volume = {332}, 19324 author = {Pusey, P.N.} 19325 } 19326 @article{Maye2010, 19327 year = {2010}, 19328 title = {Switching binary states of nanoparticle 19329 superlattices and dimer clusters by {DNA} strands}, 19330 pages = {116}, 19331 journal = {Nature Nanotechnology}, 19332 volume = {5}, 19333 author = {Maye, M.M. and Kumara, M.T. and Nykypanchuk, D. and Sherman, W.B. and Gang, O.} 19334 } 19335 @article{Leunissen2011, 19336 year = {2011}, 19337 title = {Numerical study of {DNA}-functionalized microparticles and nanoparticles: Explicit pair potentials and their implications for phase behavior}, 19338 pages = {084702}, 19339 journal = {Journal of Chemical Physics}, 19340 volume = {134}, 19341 author = {Leunissen, M.E. and Frenkel, D.} 19342 } 19343 @article{Chan2001, 19344 number = {2}, 19345 year = {2001}, 19346 title = {Active Contours Without Edges}, 19347 pages = {266-277}, 19348 journal = {IEEE TRANSACTIONS ON IMAGE PROCESSING}, 19349 volume = {10}, 19350 author = {Chan, T.T. and Vese, L.A.} 19351 } 19352 @article{Yen1995, 19353 number = {3}, 19354 year = {1995}, 19355 title = {A new criterion for automatic multilevel thresholding}, 19356 pages = {370-378}, 19357 journal = {IEEE Transactions on Image Processing}, 19358 volume = {4}, 19359 author = {Yen, J.-C. and Chang, F.-J. and Chang, S.} 19360 } 19361 @article{Kapur1985, 19362 number = {3}, 19363 year = {1985}, 19364 title = {A new method for gray-level picture thresholding using the entropy of the histogram}, 19365 pages = {273-285}, 19366 journal = {Computer Vision, Graphics, and Image Processing}, 19367 volume = {29}, 19368 author = {Kapur, J.N. and Sahdoo, P.K. and Wong, A.K.C.} 19369 } 19370 @article{Sezgin2004, 19371 number = {1}, 19372 year = {2004}, 19373 title = {Survey over image thresholding techniques 19374 and quantitative performance evaluation}, 19375 pages = {146-165}, 19376 journal = {Journal of Electronic Imaging}, 19377 volume = {13}, 19378 author = {Sezgin, M. and Sankur, B.} 19379 } 19380 @article{Kittler1986, 19381 number = {1}, 19382 year = {1986}, 19383 title = {Minimum error thresholding}, 19384 pages = {41-47}, 19385 journal = {Pattern Recognition}, 19386 volume = {19}, 19387 author = {Kittler, J. and Illingworth, J.} 19388 } 19389 @article{Otsu1979, 19390 year = {1979}, 19391 title = {A threshold selection method from gray-level histograms}, 19392 pages = {62-66}, 19393 journal = {IEEE Transactions on Systems, Man and Cybernetics }, 19394 volume = {9}, 19395 author = {Otsu, N.} 19396 } 19397 @article{Zeskind2007, 19398 number = {7}, 19399 year = {2007}, 19400 title = {Nucleic acid and protein mass mapping by live-cell deep-ultraviolet microscopy}, 19401 pages = {567-569}, 19402 journal = {Nature Methos}, 19403 volume = {4}, 19404 author = {Zeskind, B.J. and Jordan, C.D. and Timp, W. and Trapani, L. and Waller, G. and Horodincu, V. and Ehrlich, D.J. and Matsudaira, P.} 19405 } 19406 @article{Dorenbos2008, 19407 year = {2008}, 19408 title = {Low noise superconducting single photon detectors on silicon}, 19409 pages = {131101}, 19410 journal = {Applied Physics Letters}, 19411 volume = {93}, 19412 author = {Dorenbos, S.N. and Reiger, E.M. and Perinetti, U. and Zwiller, V. and Zijlstra, T. and Klapwijk, T.M.} 19413 } 19414 @article{Goltsman2001, 19415 number = {6}, 19416 year = {2001}, 19417 title = {Picosecond superconduction single-photon optical detector}, 19418 pages = {705-707}, 19419 journal = {Applied Physics Letters}, 19420 volume = {79}, 19421 author = {Gol'tsman, G.N. and Okunev, O. and Chulkova, G. and Lipatov, A. and Semenov, A. and Smirnov, K. and Voronov, B. and Dzardanov, A. and Williams, C. and Sobolewski, R.} 19422 } 19423 @article{Shore2011, 19424 number = {2}, 19425 year = {2011}, 19426 title = {Optimal acquisition scheme for subwavelength localization microscopy of bleachable fluorophores}, 19427 pages = {289-291}, 19428 journal = {Optics Letters}, 19429 volume = {36}, 19430 author = {Shore, E. and Small, A.} 19431 } 19432 @article{Stallinga2011, 19433 year = {2011}, 19434 title = {Optical trapping at low numerical aperture}, 19435 pages = {11027}, 19436 journal = {Journal of the European Optical Society}, 19437 volume = {6}, 19438 author = {Stallinga, S.} 19439 } 19440 @article{Ulbrich2007, 19441 number = {4}, 19442 year = {2007}, 19443 title = {Subunit counting in membrane-bound proteins}, 19444 pages = {319-321}, 19445 journal = {Nature Methods}, 19446 volume = {4}, 19447 author = {Ulbrich, M.H. and Isacoff, E.Y.} 19448 } 19449 @article{Ulbrich2007-S3, 19450 number = {4}, 19451 year = {2007}, 19452 title = {Subunit counting in membrane-bound proteins}, 19453 pages = {319-321}, 19454 note = {Supplementary Methods}, 19455 journal = {Nature Methods}, 19456 volume = {4}, 19457 author = {Ulbrich, M.H. and Isacoff, E.Y.} 19458 } 19459 @article{Grunwald2011, 19460 year = {2011}, 19461 title = {Nuclear export dynamics of {RNA}-protein complexes}, 19462 pages = {333-341}, 19463 journal = {Nature}, 19464 volume = {475}, 19465 author = {{Gr\"unwald}, D. and Singer, R.H. and Rout, M.} 19466 } 19467 @inbook{Luengo2011, 19468 series = {Biological and Medical Physics, Biomedical Engineering Series}, 19469 year = {2011}, 19470 title = {Medical Image Processing: Techniques and Applications}, 19471 note = {ISBN 978-1-4419-9769-2}, 19472 editor = {Dougherty, G.}, 19473 chapter = {Rapid prototyping of image analysis applications}, 19474 publisher = {Springer}, 19475 author = {Luengo Hendriks, C. L. and Malm, P. and Bengtsson, E.} 19476 } 19477 @article{Knowles2011, 19478 number = {36}, 19479 year = {2011}, 19480 title = {Observation of spatial propagation of amyloid 19481 assembly from single nuclei}, 19482 pages = {14746-14751}, 19483 journal = {Proceedings of the National Academy of Science USA}, 19484 volume = {108}, 19485 author = {Knowles, T.P.J. and White, D.A. and Abate, A.A. and Agresti, J.J. and Cohen, S.I.A. and Sperling, R.A. and Genst, E.J. de and Dobson, C.M. and Weitz, D.A.} 19486 } 19487 @article{Kampmannetal2011, 19488 number = {6}, 19489 year = {2011}, 19490 title = {Mapping the orientation of nuclear pore proteins in living cells with polarized fluorescence microscopy}, 19491 pages = {643-650}, 19492 journal = {Nature structural & molecular biology}, 19493 volume = {18}, 19494 author = {Kampmann, M. and Atkinson, C.E. and Mattheyses, A.L. and Simon, S.M.} 19495 } 19496 @article{Nature08-2011, 19497 year = {2011}, 19498 title = {Suppression of the coffee-ring effect by 19499 shape-dependent capillary interactions}, 19500 pages = {308-311}, 19501 journal = {Nature}, 19502 volume = {476}, 19503 author = {Yunker, P.J. and Still, T. and Lohr, M.A. Yodh, A.G.} 19504 } 19505 @article{Park2004, 19506 number = {3}, 19507 year = {2004}, 19508 title = {Nanometre localization of single {ReAsH} molecules}, 19509 pages = {199-205}, 19510 journal = {Journal of Microscopy}, 19511 volume = {216}, 19512 author = {Park, H. and Hanson, T. and Duff, S.R. and Selvin, P.R.} 19513 } 19514 @article{Martin2005, 19515 number = {10}, 19516 year = {2005}, 19517 title = {Mammalian cell-based optimization of the biarsenical binding tetracysteine motif for improved fluorescence and affinity}, 19518 pages = {1308-1314}, 19519 journal = {Nature biotechnology}, 19520 volume = {23}, 19521 author = {Martin, B.R. and Giepmanns, B.N.G. and Adams, S.R. and Tsien, R.Y.} 19522 } 19523 @article{Kampmann2009, 19524 number = {7}, 19525 year = {2009}, 19526 title = {Three-dimensional structure and flexibility of a membrane-coating module of the nuclear pore complex}, 19527 pages = {782-789}, 19528 journal = {Nature structural & molecular biology}, 19529 volume = {16}, 19530 author = {Kampmann, M. and Blobel, G.} 19531 } 19532 @phdthesis{Hein2009, 19533 year = {2009}, 19534 title = {Live Cell {STED} Microscopy 19535 Using Genetically Encoded Markers}, 19536 address = {{G\"ottingen}, Germany}, 19537 school = {Georg-August-{Universit\"at} {G\"ottingen} }, 19538 author = {Hein, B.} 19539 } 19540 @article{Grunwald2010, 19541 year = {2010}, 19542 title = {In vivo imaging of labelled endogenous b-actin 19543 {mRNA} during nucleocytoplasmic transport}, 19544 pages = {604-609}, 19545 journal = {Nature}, 19546 volume = {467}, 19547 author = {{Gr\"unwald}, D. and Singer, R.H.} 19548 } 19549 @article{Delber2008, 19550 year = {2008}, 19551 title = {A Fence-like Coat for the Nuclear Pore Membrane}, 19552 pages = {815-826}, 19553 journal = {Molecular Cell}, 19554 volume = {32}, 19555 author = {Delber, E.W. and Ma, Y. and Seo, H.-S. and Hsia, K.-C. and Noriega, T.R. and Blobel, G. and Hoelz, A.} 19556 } 19557 @article{Churchman2005, 19558 number = {5}, 19559 year = {2005}, 19560 title = {Single molecule high-resolution colocalization of {Cy3} 19561 and {Cy5} attached to macromolecules measures 19562 intramolecular distances through time}, 19563 pages = {1419-1423}, 19564 journal = {Proceedings of the National Academy of Science}, 19565 volume = {102}, 19566 author = {Churchman, L.S. and {\"Oktem}, Z. and Rock, R.S. and Dawson, J.F. and Spudich, J.A.} 19567 } 19568 @article{Brohawn2009, 19569 year = {2008}, 19570 title = {Structural Evidence for Common Ancestry of the Nuclear Pore Complex and Vesicle Coats}, 19571 pages = {1369-1373}, 19572 journal = {Science}, 19573 volume = {322}, 19574 author = {Brohawn, S.G. and Leksa, N.C. and Spear, E.D. and Rajashankar, K.R. and Schwartz, T.U.} 19575 } 19576 @article{Beck2007, 19577 year = {2007}, 19578 title = {Snapshots of nuclear pore complexes in action 19579 captured by cryo-electron tomography}, 19580 pages = {611-615}, 19581 journal = {Nature}, 19582 volume = {449}, 19583 author = {Beck, M. and Lucic, V. and {F\"orster}, F. and Baumeister, W. and Medalia, O.} 19584 } 19585 @article{Alber2007, 19586 year = {2007}, 19587 title = {The molecular architecture of the nuclear 19588 pore complex}, 19589 pages = {695-701}, 19590 journal = {Nature}, 19591 volume = {450}, 19592 author = {Alber, F. and Dokudovskaya, S. and Veenhoff, L.M. and Zhang, W. and Kipper, J. nad Devos, D. and Suprapto, A. and Karni-Schmidt, O. and Williams, R. and Chait, B.T. and Sali, A. and Rout, M.P.} 19593 } 19594 @article{Varbioiu2006, 19595 number = {466-469}, 19596 year = {2006}, 19597 title = {Structural insight into yeast septin organizaiton from polarized fluorescent micrsocopy}, 19598 journal = {Nature}, 19599 volume = {443}, 19600 author = {Varabioiu, A.M. and Mitchison, T.J.} 19601 } 19602 @article{Mattheyses2010, 19603 year = {2010}, 19604 title = {Fluorescence anisotropy reveals order and disorder of protein domains in the nuclear pore complex}, 19605 pages = {1706-1717}, 19606 journal = {Biophysical Journal}, 19607 volume = {99}, 19608 author = {Mattheyes, A.L. and Kampmann, M. and Aktinson, C.E. and Simon, S.M.} 19609 } 19610 @article{Voortman2012, 19611 year = {2012}, 19612 title = {Fast, spatially varying {CTF} correction in {TEM}}, 19613 pages = {26-34}, 19614 journal = {Ultramicroscopy}, 19615 volume = {118}, 19616 author = {Voortman, L.M. and Franken, E.M. and Vliet, L.J. van and Rieger, B.} 19617 } 19618 @article{Hell2003a, 19619 year = {2003}, 19620 title = {Imaging and writing at the nanoscale with focused visible light through saturable optical transitions}, 19621 pages = {859-860}, 19622 journal = {Applied Physics A}, 19623 volume = {77}, 19624 author = {Hell, S.W. and Jakobs, S. and Kastrup, L.} 19625 } 19626 @article{Huang2011, 19627 number = {5}, 19628 year = {2011}, 19629 title = {Simultaneous multiple-emitter fitting for single molecule super-resolution imaging}, 19630 pages = {1377-1393}, 19631 journal = {Biomedical Optics Express }, 19632 volume = {2}, 19633 author = {Huang, F. and Schwartz, S.L. and Byars, J.M. and Lidke, K.A. } 19634 } 19635 @article{Bader2011, 19636 year = {2011}, 19637 title = {Homo-FRET Imaging as a Tool to Quantify Protein and 19638 Lipid Clustering}, 19639 pages = {475-483}, 19640 journal = {ChemPhysChem}, 19641 volume = {12}, 19642 author = {Bader,A.N. and Hoetzl, S. and Hofman, E.G. and Voortman, J. and Bergen en Henegouwen, 19643 P.M.P. van and Meer, G. van and Gerritsen, H.C.} 19644 } 19645 @article{Bader2009, 19646 year = {2009}, 19647 title = {Homo-FRET Imaging Enables Quantification of Protein Cluster Sizes 19648 with Subcellular Resolution}, 19649 pages = {2613-2622}, 19650 journal = {Biophysical Journal}, 19651 volume = {97}, 19652 author = {Bader,A.N. and Hofmann, E.G. and Voortman, J. and Bergen en Henegouwen, P.M.P. van and Gerritsen, H.C.} 19653 } 19654 @article{Bader2007, 19655 number = {11}, 19656 year = {2007}, 19657 title = {Imaging of protein cluster sizes by means of 19658 confocal time-gated fluorescence anisotropy 19659 microscopy}, 19660 pages = {6934-6945}, 19661 journal = {Optics Express}, 19662 volume = {15}, 19663 author = {Bader, A.N. and Hofman, E.G. and Bergen en Henegouwen, P.M.P. van and 19664 Gerritsen,H.C.} 19665 } 19666 @article{Dange208, 19667 number = {1}, 19668 year = {2008}, 19669 title = {Autonomy and robustness of thranslocation through the nuclear pore complex: a single molecule study}, 19670 pages = {77-86}, 19671 journal = {Journal of Cell Biology}, 19672 volume = {183}, 19673 author = {Dange, T. and {Gr\"unwald}, D. and {Gr\"unwald}, A. and Peters, R. and Kubitscheck, U.} 19674 } 19675 @article{Kubitscheck2005, 19676 number = {2}, 19677 year = {2005}, 19678 title = {Nuclear transport of single molecules: dwell times at the nuclear pore complex}, 19679 pages = {233-243}, 19680 journal = {Journal of Cell Biology}, 19681 volume = {168}, 19682 author = {Kubitscheck, U. and {Gr\"unwald}, D. and Hoekstra, A. and Rohleder, D. and Kues, T. and Siebrasse, J.P. and Peters, R.} 19683 } 19684 @article{Arhel2006, 19685 number = {10}, 19686 year = {2006}, 19687 title = {Quantitative four-dimensional tracking of cytoplasmic and nuclear {HIV-1} complexes}, 19688 pages = {817-824}, 19689 journal = {Nature methods}, 19690 volume = {3}, 19691 author = {Arhel, N. and Genovesio, A. and Kim, K.A. and Miko, S. and Perret, E. and Olvio-Marin, J.C. and Shorte, S. and Charneau, P.} 19692 } 19693 @article{Rout2000, 19694 year = {2000}, 19695 title = {The yeast nuclear pore complex: Composition, architecture, and transport mechanism}, 19696 pages = {635-651}, 19697 journal = {Journal of Cell Biology}, 19698 volume = {148}, 19699 author = {Rout,M.P. and Aitchison, J.D. and Suprapto, A. and Hjertaas, K. and Zhao, Y.M. and Chait, B.T.} 19700 } 19701 @article{Alber2007b, 19702 year = {2007}, 19703 title = {Determining the architectures of 19704 macromolecular assemblies}, 19705 pages = {683-694}, 19706 journal = {Nature}, 19707 volume = {450}, 19708 author = {Alber, F. and Dokudovskaya2, S. and Veenhoff, L.M. and Zhang, W. and Kipper, J. and 19709 Devos, D. and Suprapto, A. and Karni-Schmidt, O. and Williams, R. and Chait, B.T. and 19710 Rout, M.P. and Sali,A.} 19711 } 19712 @article{Brohawn2009b, 19713 number = {11}, 19714 year = {2009}, 19715 title = {Molecular architecture of the {Nup84-Nup145C-Sec13} edge element in the nuclear pore complex lattice}, 19716 pages = {1173-1178}, 19717 journal = {Nature structural & molecular biology}, 19718 volume = {16}, 19719 author = {Brohawn, S.G. and Schwartz, T.U.} 19720 } 19721 @article{Lewis2007, 19722 year = {2007}, 19723 title = {A nuclear envelope protein linking nuclear pore basket assembly, {SUMO} protease regulation, and {mRNA} surveillance}, 19724 pages = {813-827}, 19725 journal = {Journal of Cell Biology}, 19726 volume = {178}, 19727 author = {Lewis, A. and Felberbaum, R. and Hochstrasser, M.} 19728 } 19729 @article{Jovanovic2008, 19730 year = {2008}, 19731 title = {Artificial nanopores that mimic the transport selectivity of the nuclear pore complex }, 19732 pages = {1023-1027}, 19733 journal = {Nature}, 19734 volume = {457}, 19735 author = {Jovanovic-Talisman, T. and Tetenbaum-Novatt, J. and McKenney, A.S. and Zilman, A. and Peters, R. and Rout, M.P. and Chait, B.T.} 19736 } 19737 @article{Kim2008, 19738 year = {2008}, 19739 title = {A structure-permeability relationship of ultrathin nanoporous silicon membrane: a comparison with the nuclear envelope}, 19740 pages = {4230-4231}, 19741 journal = {Journal of the American Chemical Society}, 19742 volume = {130}, 19743 author = {Kim, E. and Xiong, H. and Striemer, C.C. and Fang, D.Z. and Fauchet, P.M. and McGrath, J.L. and Amemiya, S.} 19744 } 19745 @article{Debler2008, 19746 year = {2008}, 19747 title = {A fence-like coat for the nuclear pore membrane}, 19748 pages = {815-826}, 19749 journal = {Molecular Cell}, 19750 volume = {32}, 19751 author = {Debler, E.W. and Ma, Y. and Seo, H.S. and Hsia, K.C. and Noriega, T.R. and Blobel, G. and Hoelz, A.} 19752 } 19753 @article{Rout2007, 19754 year = {2007}, 19755 title = {Virtual gating and nuclear transport: the hole picture}, 19756 pages = {622-628}, 19757 journal = {Trends in Cell Biology}, 19758 volume = {13}, 19759 author = {Rout, M.P. and Aitchison, J.D. and Magnasco, M.O. and Chait, B.T.} 19760 } 19761 @article{Qu2004, 19762 number = {31}, 19763 year = {2004}, 19764 title = {Nanometer-localized multiple single-molecule fluorescence microscopy}, 19765 pages = {11298-11303}, 19766 journal = {Proceedings of the National Academy of Science USA}, 19767 volume = {101}, 19768 author = {Qu, X. and Wu, D. and Mets, L. and Scherer, N.F.} 19769 } 19770 @article{Hsia2007, 19771 year = {2007}, 19772 title = {Architecture of a coat for the nuclear pore membrane}, 19773 pages = {1313-1326}, 19774 journal = {Cell}, 19775 volume = {131}, 19776 author = {Hsia, K. C. and Savropoulos, P. and Blobel, G. and Hoelz, A.} 19777 } 19778 @article{Daigle2001, 19779 year = {2001}, 19780 title = {Nuclear pore complexes from immobile networks and have a very low turnover in mammalian cells}, 19781 pages = {71-84}, 19782 journal = {Journal of Cell Biology}, 19783 volume = {154}, 19784 author = {Daigle, N. and Beaudouin, J. and Hartnell, L. and Imreh, G. and Hallberg, E. and Lippincott-Schwartz, J. and Ellenberg, J.} 19785 } 19786 @article{Roberti2011, 19787 year = {2011}, 19788 title = {Confocal fluorescence anisotropy and FRAP imaging of alpha-synuclein amyloid aggregates in living cells}, 19789 pages = {e23338}, 19790 journal = {PLoS ONE}, 19791 volume = {6}, 19792 author = {Roberti, M.J. and Jovin, T.M. and Jares-Erijman, E.} 19793 } 19794 @article{Roberti2007, 19795 year = {2007}, 19796 title = {Fluorescence imaging of amyloid formation in living cells by a functional, tetracysteine-tagged alpha-synuclein}, 19797 pages = {345-351}, 19798 journal = {Nature Methods}, 19799 volume = {4}, 19800 author = {Roberti, M.J. and Bertoncini, C.W. and Klement, R. and Jares-Erijman, E.A. and Jovin, T.M.} 19801 } 19802 @article{Dudkina2011, 19803 number = {37}, 19804 year = {2011}, 19805 title = {Interaction of complexes {I, III}, and {IV} within 19806 the bovine respirasome by single particle 19807 cryoelectron tomography}, 19808 pages = {15196-15200}, 19809 journal = {Proceedings of the National Academy of Science USA}, 19810 volume = {108}, 19811 author = {Dudkina, N. and Kudryashev, M. and Stahlberg, H. and Boekema, E.J.} 19812 } 19813 @article{Rudnaya2011, 19814 year = {2011}, 19815 title = {Defocus and twofold astigmatism correction in {HAADF-STEM}}, 19816 pages = {1043-1054}, 19817 journal = {Ultramicroscopy}, 19818 volume = {111}, 19819 author = {Rudnaya, M.E. and Broek, W. van den and Doornbos, R.M.P. and Mattheij, R.M.M. and Maubach, J.M.L.} 19820 } 19821 @article{Verdoold2011, 19822 year = {2011}, 19823 title = {Femtomolar {DNA} detection by parallel colorimetric darkfield microscopy of functionalized gold nanoparticles}, 19824 pages = {77-81}, 19825 journal = {Biosensors and Bioelectronics}, 19826 volume = {27}, 19827 author = {Verdoold, R. and Gill, R. and Ungureanu, F. and Molenaar, R. and Kooyman, R.P.H.} 19828 } 19829 @article{Putten2011, 19830 year = {2011}, 19831 title = {Scattering Lens Resolves Sub-100 nm Structures with Visible Light}, 19832 pages = {193905}, 19833 journal = {Physical Review Letters}, 19834 volume = {106}, 19835 author = {Putten, E.G. van and Akbulut, D. and Bertolotti, J. and Vos, W.L. and Lagendijk, A. and Mosk, A.P.} 19836 } 19837 @article{Foreman2011, 19838 year = {2011}, 19839 title = {Fundamental limits in single-molecule orientation measurements}, 19840 pages = {093013}, 19841 journal = {New Journal of Physics}, 19842 volume = {13}, 19843 author = {Foreman, M.R. and {T\"or\"ok}, P.} 19844 } 19845 @article{Kendrick1994, 19846 number = {27}, 19847 year = {1994}, 19848 title = {Phase-diversity wave-front sensor for imaging systems}, 19849 pages = {6533-6546}, 19850 journal = {Applied Optics}, 19851 volume = {33}, 19852 author = {Kendrick, R.L. and Acton, D.S. and Duncan, A.L.} 19853 } 19854 @article{Olivier2009, 19855 number = {20}, 19856 year = {1009}, 19857 title = {Dynamic aberration correction for multiharmonic microscopy}, 19858 pages = {3145-3147}, 19859 journal = {Optics Letters}, 19860 volume = {34}, 19861 author = {Olivier, N. and Debarre, D. and Beaurepaire, E.} 19862 } 19863 @article{Coene1991, 19864 year = {1991}, 19865 title = {Improved methods for the determination of the spherical aberration coefficient in high-resolution electron microscopy from micrographs of an amorphous object}, 19866 pages = {225-233}, 19867 journal = {Ultramicroscopy}, 19868 volume = {38}, 19869 author = {Coene, W.M.J. and Denteneer, T.J.J.} 19870 } 19871 @article{Saxton2000, 19872 year = {2000}, 19873 title = {A new way of measuring microscope aberrations}, 19874 pages = {41-45}, 19875 journal = {Ultramicroscopy}, 19876 volume = {81}, 19877 author = {Saxton, W.O.} 19878 } 19879 @article{Steinecker2000, 19880 year = {2000}, 19881 title = {Measurement of lens aberrations by means of image 19882 displacements in beam-tilt series}, 19883 pages = {149-161}, 19884 journal = {Ultramicroscopy}, 19885 volume = {81}, 19886 author = {Steinecker, A. and Mader, W.} 19887 } 19888 @phdthesis{Brinkers2011, 19889 month = {October}, 19890 year = {2011}, 19891 title = {All that glitters is gold: }, 19892 address = {Delft, The Netherlands}, 19893 school = {Delft University of Technology}, 19894 author = {Brinkers, S.} 19895 } 19896 @article{Thust1992, 19897 year = {1992}, 19898 title = {Quantitative high-speed matching of high-resolution electron microscopy images}, 19899 pages = {23-45}, 19900 journal = {Ultramicroscopy}, 19901 volume = {45}, 19902 author = {Thust, A. and Urban, K.} 19903 } 19904 @article{Holden2011, 19905 number = {4}, 19906 year = {2011}, 19907 title = {DAOSTORM: an algorithm for high-density 19908 super-resolution microscopy}, 19909 pages = {279-280}, 19910 journal = {Nature Methods}, 19911 volume = {8}, 19912 author = {Holden, S.J. and Uphoff, S. and Kapanidis, A.N.} 19913 } 19914 @article{Tejada2011, 19915 year = {2011}, 19916 title = {The role of {Poisson's} binomial distribution in the analysis of {TEM} images}, 19917 pages = {1553-1556}, 19918 journal = {Ultramicroscopy}, 19919 volume = {111}, 19920 author = {Tejada, A. and Dekker, A.J. den} 19921 } 19922 @article{Nejadasl2011, 19923 year = {2011}, 19924 title = {Defocus estimationfromstroboscopiccryo-electronmicroscopydata}, 19925 pages = {1592-1598}, 19926 journal = {Ultramicroscopy}, 19927 volume = {111}, 19928 author = {Nejadasl, F. Karimi and Karuppasamy, M. and Koster, A.J. and Ravelli, R.B.G.} 19929 } 19930 @article{Barton2011, 19931 year = {2011}, 19932 title = {In-focus electron microscopy of frozen-hydrated biological samples with a 19933 Boersch phase plate}, 19934 pages = {1696-1705}, 19935 journal = {Ultramicroscopy}, 19936 volume = {111}, 19937 author = {Barton, B. and Rhinow, D. and Walter, A. and {Schr\"oder}, R. and Benner, G. and Majorovits, E. and Matijevic, M.} 19938 } 19939 @article{Adelson1992, 19940 number = {2}, 19941 year = {1992}, 19942 title = {Single lens stereo with a plenoptic camera}, 19943 pages = {99-106}, 19944 journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence}, 19945 volume = {14}, 19946 author = {Adelson, E.H. and Wang, J.Y.A.} 19947 } 19948 @article{Deschout2012, 19949 number = {1}, 19950 year = {2012}, 19951 title = {The influence of movement on the localization precision of sub-resolution particles in fluorescence microscopy}, 19952 pages = {97-109}, 19953 journal = {Journal of Biophotonics}, 19954 volume = {5}, 19955 author = {Deschout, H. and Neyts, K. and Breaeckmans, K.} 19956 } 19957 @article{Zhou2011, 19958 number = {12}, 19959 year = {2011}, 19960 title = {Computational Cameras: Convergence of Optics and Processing}, 19961 pages = {3322-3340}, 19962 journal = {IEEE Transactions on Image Processing}, 19963 volume = {20}, 19964 author = {Zhou, C. and Nayar, S.K.} 19965 } 19966 @misc{patentappPAM, 19967 month = {29 Septemeber}, 19968 year = {2011}, 19969 title = {Optical Modulator device and spatio-temporally light modulated imaging system}, 19970 howpublished = {WO 2011/116904}, 19971 author = {Jovin, T.M. and Caarls, W. and Vries, A. de} 19972 } 19973 @article{Piestun2010, 19974 number = {19}, 19975 month = {October}, 19976 year = {2010}, 19977 title = {Performance limits on three-dimensional particle localization in photon-limited microscopy}, 19978 pages = {3306-3308}, 19979 journal = {{Optics letters}}, 19980 volume = {35}, 19981 author = {Grover, G. and Pavani, S.R.P. and Piestun, R.} 19982 } 19983 @article{Schonle2008, 19984 number = {25}, 19985 month = {December}, 19986 year = {2008}, 19987 title = {Isotropic {3D} Nanoscopy based on single emitter switching}, 19988 pages = {20774-20788}, 19989 journal = {Optics Express}, 19990 volume = {16}, 19991 author = {Middendorff, C. von and Egner, A. and Geisler, C. and Hell, S.W. and {Sch\"onle}, A.} 19992 } 19993 @article{Moerner2010, 19994 number = {16}, 19995 month = {October}, 19996 year = {2010}, 19997 title = {Three-dimensional localization precision of the double-helix point spread function versus astigmatism and biplane}, 19998 journal = {Applied Physics Letters}, 19999 volume = {97}, 20000 author = {Badieirostami, M. and Lew, M.D. and Thompson, M.A. and Moerner, W.E.} 20001 } 20002 @inproceedings{DeBeule2011, 20003 year = {2011}, 20004 title = {Generation-3 programmable array microscope {(PAM)} with digital micro-mirror device {(DMD)}}, 20005 booktitle = {SPIE Proceeding Conference 7932 Session 4}, 20006 pages = {7932-15}, 20007 author = {Beule, P.A.A. de and Vried, A.H.B. de and Arndt-Jovin, D.J. and Jovin, T.M.} 20008 } 20009 @article{Greenaway2011, 20010 year = {2011}, 20011 title = {Nanometric depth resolution from multi-focal images in microscopy}, 20012 pages = {942-951}, 20013 journal = {Journal of the royal society}, 20014 volume = {8}, 20015 author = {Dalgarno, H.I.C. and Dalgarno, P.A. and Dada, A.C. and Towers, C.E. and Gibson, G.J. and Parton, R.M. and Davis, I. and Warburton R.J. and Greenaway, A.H.} 20016 } 20017 @article{Cherny2010, 20018 year = {2010}, 20019 title = {Stoichiometry of a regulatory splicing complex 20020 revealed by single-molecule analyses}, 20021 journal = {The EMBO Journal}, 20022 author = {Cherny, D.I. and Gooding, C. and Eperon, G.E. and Coelho, M.B. and Bagshaw, C.R. and Smith, C.W.J. and Eperon, I.C. } 20023 } 20024 @article{Xu2012, 20025 number = {2}, 20026 year = {2012}, 20027 title = {Dual-objective {STORM} reveals three-dimensional filament organization in the actin cytoskeleton}, 20028 pages = {185-190}, 20029 journal = {Nature Methods}, 20030 volume = {9}, 20031 author = {Xu, K. and Babcock, H.P. and Zhuang, X.} 20032 } 20033 @article{Cox2012, 20034 number = {2}, 20035 year = {2012}, 20036 title = {Bayesian localization microscopy reveals nanoscale 20037 podosome dynamics}, 20038 pages = {195-200}, 20039 journal = {Nature Methods}, 20040 volume = {9}, 20041 author = {Cox, S. and Rosten, E. and Monypenny, J. and Jovanoivc-Talisman, T. and Burnette, D.T. and Lippincott-Schwartz, J. and Jones, G.E. and Heintzmann, R.} 20042 } 20043 @article{Stallinga2012, 20044 number = {6}, 20045 year = {2012}, 20046 title = {Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model}, 20047 pages = {5896-5921}, 20048 journal = {Optics Express}, 20049 volume = {20}, 20050 author = {Stallinga, S. and Rieger, B.} 20051 } 20052 @article{Loeschberger2012, 20053 number = {3}, 20054 year = {2012}, 20055 title = {Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution}, 20056 pages = {570-575}, 20057 journal = {Journal of Cell Sciences}, 20058 volume = {125}, 20059 author = {{L\"oschberger}, A. and Linde, S. van de and Dabauvalle, M.C. and Rieger, B. and Heilemann, M. and Krohne, G. and Sauer, M.} 20060 } 20061 @article{Broek2012, 20062 year = {2012}, 20063 title = {Fully Automated Measurement of the Modulation Transfer Function of Charge-Coupled Devices above the Nyquist Frequency}, 20064 journal = {Microscopy and Microanalysis}, 20065 author = {Broek, W. van den and Aert, A. van and Dyck, D. van} 20066 } 20067 @article{Humphry2012, 20068 year = {2012}, 20069 title = {Ptychographic electron microscopy using high-angle dark-field scattering for sub-nanometre resolution imaging}, 20070 pages = {730-736}, 20071 note = {DOI: 10.1038/ncomms1733}, 20072 journal = {Nature communications}, 20073 volume = {3}, 20074 author = {Humphry, M.J. and Kraus, B. and Hurst, A.C. and Maiden, A.M. and Rodenburg, J.M.} 20075 } 20076 @article{Zhang2012, 20077 number = {1}, 20078 year = {2012}, 20079 title = {{IPET} and {FETR}: Experimental Approach for Studying Molecular Structure Dynamics by Cryo-Electron Tomography of a Single-Molecule Structure}, 20080 pages = {e30249}, 20081 journal = {PLOS one}, 20082 volume = {7}, 20083 author = {Zhang, L. and ren, G.} 20084 } 20085 @mastersthesis{Nieuwenhuizen2011, 20086 month = {March}, 20087 year = {2011}, 20088 title = {Resolution in localization microscopy}, 20089 address = {Delft, The Netherlands}, 20090 school = {Delft University of Technology}, 20091 author = {R.P.J. Nieuwenhuizen} 20092 } 20093 @book{Penczek2010, 20094 year = {2010}, 20095 title = {Resolution Measures in Molecular Electron Microscopy}, 20096 note = {p 73-100}, 20097 volume = {482}, 20098 publisher = {Academic Press}, 20099 author = {Penczek, P.A.} 20100 } 20101 @article{Beckmann1997, 20102 number = {5346}, 20103 year = {1997}, 20104 title = {Alignment of conduits for the nascent polypeptide chain in the ribosome-sec61 complex}, 20105 pages = {213-2126}, 20106 journal = {Science}, 20107 volume = {278}, 20108 author = {Beckmann, R. and Bubeck, D. and Grassucci, R. and Penczek, P.A. and Verschoor, A. and Blobel, G. and Frank, J.} 20109 } 20110 @article{Bottcher1997, 20111 number = {6620}, 20112 year = {1997}, 20113 title = {Determination of the fold of the core protein of 20114 hepatitis {B} virus by electron cryomicroscopy}, 20115 pages = {88-91}, 20116 journal = {Nature}, 20117 volume = {386}, 20118 author = {{B\"ottcher}, B. and Wynne, S.A. and Crowther, R.A.} 20119 } 20120 @article{SheppardOptikVol72No4_1986, 20121 number = {4}, 20122 year = {1986}, 20123 title = {The spatial frequency cut-off in three-dimensional imaging}, 20124 pages = {131--133}, 20125 journal = {Optik}, 20126 volume = {72}, 20127 author = {Sheppard, C.J.R.} 20128 } 20129 @article{SheppardOptikVol74No3_1986, 20130 number = {3}, 20131 year = {1986}, 20132 title = {The spatial frequency cut-off in three-dimensional imaging II}, 20133 pages = {128--129}, 20134 journal = {Optik}, 20135 volume = {74}, 20136 author = {Sheppard, C.J.R.} 20137 } 20138 @book{Saxton1978, 20139 year = {1978}, 20140 title = {Computer Techniques for Image Processing of Electron Microscopy}, 20141 address = {New York}, 20142 publisher = {Academic Press}, 20143 author = {Saxton, W.O.} 20144 } 20145 @article{Orlova1997, 20146 number = {3}, 20147 year = {1997}, 20148 title = {Structure of Keyhole Limpet Hemocyanin Type 1 (KLH1) at 15 A Resolution by Electron Cryomicroscopy and Angular Reconstitution}, 20149 pages = {417-437}, 20150 journal = {Journal of Molecular Biology}, 20151 volume = {271}, 20152 author = {Orlova, E.V. and Dube, P. and Harris, J.R. and Beckman, E. and Zemlin, F. and Markl, J. and Heel, M. van} 20153 } 20154 @article{Corless1996, 20155 number = {1}, 20156 year = {1996}, 20157 title = {On the Lambert-W function}, 20158 pages = {329-359}, 20159 journal = {Advances in Computational Mathematics}, 20160 volume = {5}, 20161 author = {Corless, R. and Gonnet, G. and Hare, D. and Jeffrey, D. and Knuth, D.} 20162 } 20163 @article{Barry2000, 20164 number = {1-2}, 20165 year = {2000}, 20166 title = {Analytical approximations for real values of the {Lambert W-function}}, 20167 pages = {95-103}, 20168 journal = {Mathematics and Computers in Simulation}, 20169 volume = {53}, 20170 author = {Barry,D.A. and Parlange, J.-Y. and Li, L. and Prommer, H. and Cunningham, C.J. and Stagnitti, F.} 20171 } 20172 @article{Ram2009, 20173 number = {8}, 20174 year = {2009}, 20175 title = {Improved single particle localization accuracy with dual objective multifocal plane mircoscopy}, 20176 pages = {6881-6898}, 20177 journal = {Optics Express}, 20178 volume = {17}, 20179 author = {Ram, S. and Prabhat, P. and Ward, E.S. and Ober, R.J.} 20180 } 20181 @article{Wong2011, 20182 number = {3}, 20183 year = {2011}, 20184 title = {Limit of the Accuracy of Parameter Estimation for Moving Single Molecules Imaged by Fluorescence Microscopy}, 20185 pages = {895-911}, 20186 journal = {IEEE Transactions on Signal Processing}, 20187 volume = {59}, 20188 author = {Wong, Y. and Lin, Z. and Ober, R.J.} 20189 } 20190 @article{Chao2012, 20191 year = {2012}, 20192 title = {Fisher information matrix for branching processes 20193 with application to electron-multiplying charge-coupled devices}, 20194 pages = {349-379}, 20195 journal = {Multidimensional System and Signal Processing}, 20196 volume = {23}, 20197 author = {Chao, J. and Ward, E.S. and Ober, R.J.} 20198 } 20199 @article{Dempsey2011, 20200 number = {12}, 20201 year = {2011}, 20202 title = {Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging}, 20203 pages = {1027-1031}, 20204 journal = {Nature Methods}, 20205 volume = {8}, 20206 author = {Dempsey, G.T. and Vaughan, J.C. and Chen, K.H. and Bates, M. and Zhuang, X.} 20207 } 20208 @article{Manely2008, 20209 number = {2}, 20210 year = {2008}, 20211 title = {High-density mapping of single-molecule trajectories with photoactivated localization microscopy}, 20212 pages = {156-158}, 20213 journal = {Nature Methods}, 20214 volume = {5}, 20215 author = {Manely, S. and Gilette, J.M. and Patterson, G.H. and Shroff, H. and Hess, H.F. and Betzig, E. and Lippincott-Schwarz, J.} 20216 } 20217 @article{Wicker2010a, 20218 year = {2010}, 20219 title = {Single-shot optical sectioning using polarization-coded structured illumination}, 20220 pages = {084010}, 20221 journal = {Journal of Optics}, 20222 author = {Wicker, K. and Heintzmann, R.} 20223 } 20224 @article{Schoen2011, 20225 year = {2011}, 20226 title = {Binding-Activated Localization Microscopy of {DNA} Structures}, 20227 journal = {Nano Letters}, 20228 author = {Schoen, I. and Ries, J. and Klotzsch, E. and Ewers, H. and Vogel, V.} 20229 } 20230 @article{Vrabioiu2006, 20231 number = {28}, 20232 year = {2006}, 20233 title = {Structural insights into yeast septin organization 20234 from polarized fluorescence microscopy}, 20235 pages = {446-449}, 20236 journal = {Nature}, 20237 volume = {443}, 20238 author = {Vrabioiu, A.M. and Mitschison, T.J.} 20239 } 20240 @article{Lukosz1962a, 20241 number = {4}, 20242 year = {1962}, 20243 title = {{\"Ubertragung} nicht-negativer Signale durch lineare Filter}, 20244 pages = {335-364}, 20245 journal = {Journal of Modern Optics}, 20246 volume = {9}, 20247 author = {Lukosz, W.} 20248 } 20249 @article{Fitzhugh1983, 20250 year = {1983}, 20251 title = {Statistical Properties of the Asymmetric Random Telegraph Signal, with Applications to Single-Channel Analysis}, 20252 pages = {75-89}, 20253 journal = {Mathematical Biosciences}, 20254 volume = {64}, 20255 author = {R. Fitzhugh} 20256 } 20257 @article{Bobroff1986, 20258 number = {6}, 20259 year = {1986}, 20260 title = {Position measurement with a resolution and noiselimited instrument}, 20261 pages = {1152-1157}, 20262 journal = {Review of Scientifric Instruments}, 20263 volume = {57}, 20264 author = {N. Bobroff} 20265 } 20266 @article{Heintzmann2007, 20267 year = {2007}, 20268 title = {Estimating missing information by maximum likelihood deconvolution}, 20269 pages = {136-144}, 20270 journal = {Micron}, 20271 volume = {38}, 20272 author = {Heintzmann, R.} 20273 } 20274 @article{Annibale2011, 20275 number = {7}, 20276 year = {2011}, 20277 title = {Identification of clustering artifacts in 20278 photoactivated localization microscopy}, 20279 pages = {527-528}, 20280 journal = {Nature Methods}, 20281 volume = {8}, 20282 author = {Annibale, P. and Vanni, S. and Scarelli, M. and Rothlisberger, U. and Radenovic, A.} 20283 } 20284 @article{Ta2010, 20285 number = {1}, 20286 year = {2010}, 20287 title = {An Extended Scheme for Counting Fluorescent Molecules by Photon- Antibunching}, 20288 pages = {119-124}, 20289 journal = {Laser Physics}, 20290 volume = {20}, 20291 author = {Ta, H. and Wolfrum, J. and Herten, D.-P.} 20292 } 20293 @article{Tian2012, 20294 number = {8}, 20295 year = {2012}, 20296 title = {Experimental compressive phase space tomography}, 20297 pages = {8296-8308}, 20298 journal = {Optics Express}, 20299 volume = {20}, 20300 author = {Tian, L. and Lee, J. and Oh, S.B. and Barbastathis, G.} 20301 } 20302 @article{Waller2011, 20303 number = {3}, 20304 year = {2011}, 20305 title = {Phase and amplitude imaging from noisy images by Kalman filtering}, 20306 pages = {2805-2815}, 20307 journal = {Optics Express}, 20308 volume = {19}, 20309 author = {Waller, L. and Tsang, M. and Ponda, S. and Young Yang, S. and Barbastathis, G.} 20310 } 20311 @inproceedings{Kurz2012, 20312 series = {SPIE}, 20313 year = {2012}, 20314 title = {Quantification of fluorescent samples by photon-antibunching}, 20315 booktitle = {Single Molecule Spectroscopy and Superresolution Imaging V}, 20316 pages = {82280K-1}, 20317 editor = {Enderlein, J. and Karol, Z. and Erdmann, R. and Koberling, F. and Gregor, I.}, 20318 author = {Kurz, A. and Schwering, M. and Herten, D.-P.} 20319 } 20320 @article{Harms1999, 20321 year = {1999}, 20322 title = {Single-Molecule Anisotropy Imaging}, 20323 pages = {2864-2870}, 20324 journal = {Bipphysical Journal}, 20325 volume = {77}, 20326 author = {Harms, G.S. and Sonnleitner, M. and {Sch\"utz}, G.J. and Gruber, H.J. and Schmidt, T.} 20327 } 20328 @article{Uji2006, 20329 year = {2006}, 20330 title = {Visualizing spatial and temporal heterogeneity of single molecule rotational diffusion in a glassy polymer by defocused wide-field imaging}, 20331 pages = {2511-2518}, 20332 journal = {Polymer}, 20333 volume = {47}, 20334 author = {Uij-i, H. and Melnikov, S.M. and Deres, A. Bergamini, G. and Schryver, F. de and Herrmann, A. and {M\"ullen}, K. and Enderlein, J. and Hofkens, J.} 20335 } 20336 @article{Ruiter1997, 20337 year = {1997}, 20338 title = {Single Molecule Rotational and Translational Diffusion Observed by Near-Field Scanning Optical Microscopy}, 20339 pages = {7318-7323}, 20340 journal = {Journal of Physical Chemistry}, 20341 volume = {101}, 20342 author = {Ruiter, A.G.T. and Veerman, J.A. and Garcia-Parajo, M.F. and Hulst, N.F. van} 20343 } 20344 @article{Pieper2011, 20345 year = {2011}, 20346 title = {Fluorescence correlation spectroscopy as a tool for measuring the rotational diffusion of macromolecules}, 20347 pages = {1-11}, 20348 journal = {Chemical Physics Letters}, 20349 volume = {516}, 20350 author = {Pieper, C.M. and Enderlein, J.} 20351 } 20352 @article{Loman2011, 20353 year = {2010}, 20354 title = {Measuring rotational diffusion of macromolecules by fluorescence correlation spectroscopy}, 20355 pages = {627-636}, 20356 journal = {Photochem. Photobiol. Sci.}, 20357 volume = {9}, 20358 author = {Loman, A. and Gergor, I. and Stutz, C. and Mund, M. and Enderlein, J.} 20359 } 20360 @article{Adhikarietal2011, 20361 year = {2011}, 20362 title = {Temperature dependent single molecule rotational dynamics in {PMA}}, 20363 pages = {1849-1856}, 20364 journal = {Phys. Chem. Chem. Phys.}, 20365 volume = {13}, 20366 author = {Adhikari, S. and Selmke, M. and Cichos, F.} 20367 } 20368 @article{Malkusch2012, 20369 year = {2012}, 20370 title = {Coordinate-based colocalization analysis of single-molecule localization microscopy data}, 20371 pages = {1-10}, 20372 journal = {Histochem Cell Biol}, 20373 volume = {137}, 20374 author = {Malkusch, S. and Endesfelder, U. and Mondry, J. and Helleri, M. and Verveer, P.J. and Heilemann, M.} 20375 } 20376 @article{Kazantsev2010, 20377 year = {2010}, 20378 title = {Fully three-dimensional defocus-gradient corrected backprojection in cryoelectron microscopy}, 20379 pages = {1128-1142}, 20380 journal = {Ultramicroscopy}, 20381 volume = {110}, 20382 author = {Kazantsev, I. and Klukowska, J. and Herman, G.T. and Cernetic, L.} 20383 } 20384 @article{Mariani2011, 20385 year = {2011}, 20386 title = {Simulation and correction of electron images of tilted planar weak-phase samples}, 20387 pages = {259-268}, 20388 journal = {Journal of Structural Biology}, 20389 volume = {174}, 20390 author = {Mariani, V. and Schenk, A.D. and Philippsen, A. and Engel, A.} 20391 } 20392 @inproceedings{Studer2012, 20393 series = {Proceedings of the SPIE}, 20394 year = {2012}, 20395 title = {Hyperspectral fluorescence microscopy based on compressed sensing }, 20396 booktitle = {Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIX}, 20397 note = {doi: 10.1117/12.908532}, 20398 editor = {Conchello, J.-A. and Cogswell, C.J. and Wilson, T. and Brown, T.G.}, 20399 author = {Studer, V. and Bobin, J. and Chahid, M. and Moussavi, H. and Candes, E. and Dahan, M.} 20400 } 20401 @article{Gabor1946b, 20402 year = {1946}, 20403 title = {Theory of Communication: Part II: The analysis of hearing}, 20404 pages = {442-445}, 20405 journal = {Journal of the Institution of Electrical Engineers}, 20406 volume = {93}, 20407 author = {Gabor, D.} 20408 } 20409 @article{Gabor1946c, 20410 year = {1946}, 20411 title = {Theory of Communication: Part III: Frequency Compression and Expansion}, 20412 pages = {445-457}, 20413 journal = {Journal of the Institution of Electrical Engineers}, 20414 volume = {93}, 20415 author = {Gabor, D.} 20416 } 20417 @article{Chruchmann2012, 20418 year = {2012}, 20419 title = {Colocalization of fluorescent probes: accurate and precise registration with nanometer resolution}, 20420 pages = {141-150}, 20421 note = {doi:10.1101/pdb.top067918}, 20422 journal = {Cold Spring Harbor Protocolls}, 20423 author = {Churchmann, L.S. and Spudich, J.A.} 20424 } 20425 @article{Dedecker2009, 20426 year = {2012}, 20427 title = {Defocused Wide-field Imaging Unravels Structural and Temporal Heterogeneity in Complex Systems}, 20428 pages = {1079-1090}, 20429 journal = {Advanced Materials}, 20430 volume = {21}, 20431 author = {Dedecker, P. and Muls, B. and Deres, A. and Uji-i, H. and Hotta, J. and Sliwa, M. and Soumillion, J.-P. and {M\"ullen}, K. and Enderlein, J. and Hofkens, J.} 20432 } 20433 @article{Ha1998, 20434 number = {10}, 20435 year = {1998}, 20436 title = {Hindered Rotational Diffusion and Rotational Jumps of Single Molecules}, 20437 pages = {2093-2096}, 20438 journal = {Physical Review Letters}, 20439 volume = {80}, 20440 author = {Ha, T. and Glass, J. and Enderle, T. and Chemla, D.S. and Weiss, S.} 20441 } 20442 @article{Bartko2002, 20443 number = {2}, 20444 year = {2002}, 20445 title = {Three-Dimensional Single Molecule Rotational Diffusion in Glassy State Polymer Films}, 20446 pages = {026101}, 20447 journal = {Physical Review Letters}, 20448 volume = {89}, 20449 author = {Bartko, A.P. and Xu, K. and Dickson, R.M.} 20450 } 20451 @article{Gould2008, 20452 number = {12}, 20453 year = {2008}, 20454 title = {Nanoscale imaging of molecular positions and anisotropies}, 20455 pages = {1027-1031}, 20456 journal = {Nature Methods}, 20457 volume = {5}, 20458 author = {Gould, T.J. and Gunewardene, M.S. and Gudheti, M.V. and Verkhusha, V.V. and Yin, S.-R. and Gosse, J.A. and Hess, S.T.} 20459 } 20460 @article{Hernando2006, 20461 year = {2006}, 20462 title = {Effect of Disorder on Ultrafast Exciton Dynamics Probed by Single Molecule Spectroscopy}, 20463 pages = {216403}, 20464 journal = {Physical Review Letters}, 20465 volume = {97}, 20466 author = {Hernando, J. and Dijk, E.M.H.P. van and Hoogenboom, J.P. and Garcia-Lopez, J.-J. and Reinhoudt, D.N. and Crego-Calama, M. and Garcia-Parajo, M.F. and Hulst, N.F. van} 20467 } 20468 @article{Simmonds2011, 20469 number = {24}, 20470 year = {2011}, 20471 title = {Three dimensional laser microfabrication in diamond using a dual adaptive optics system}, 20472 pages = {24122-24128}, 20473 journal = {Optics Express}, 20474 volume = {19}, 20475 author = {Simmonds, R.D. and Salter, P.S. and Jesacher, A. and Booth, M.J.} 20476 } 20477 @article{Cumming2011, 20478 number = {10}, 20479 year = {2011}, 20480 title = {Adaptive aberration compensation for three-dimensional micro-fabrication of photonic crystals in lithium niobate}, 20481 pages = {9419-9426}, 20482 journal = {Optics Express}, 20483 volume = {19}, 20484 author = {Cumming, B.P. and Jesacher, A. and Booth, M.J. and Wilson, T. and Gu, M.} 20485 } 20486 @article{Marshall2011, 20487 number = {5}, 20488 year = {2011}, 20489 title = {Three-dimensional imaging of direct-written photonic structures}, 20490 pages = {695-697}, 20491 journal = {Optics Letters}, 20492 volume = {36}, 20493 author = {Marshall, G.D. and Jesacher, A. and Thayil, A. and Withford, M.J. and Booth, M.} 20494 } 20495 @article{Chizhik2011, 20496 year = {2011}, 20497 title = {Probing the Radiative Transition of Single m olecules with a Tunable Microresonator}, 20498 pages = {1700-1703}, 20499 journal = {Nano Letters}, 20500 volume = {11}, 20501 author = {Chizihik, A.I. and Chizhik, A.M. and Khoptyar, D. and {B\"ar}, S. and Meixner, A.J. and Enderlein, J.} 20502 } 20503 @article{Kalaidzidis2007, 20504 year = {2007}, 20505 title = {Intracelluar objects tracking}, 20506 pages = {569-578}, 20507 journal = {European Journal of Cell Biology}, 20508 volume = {86}, 20509 author = {Kalaidzidis, Y.} 20510 } 20511 @article{Kalaidzidis2009, 20512 year = {2009}, 20513 title = {Multiple objects tracking in fluorescence microscopy}, 20514 pages = {57-80}, 20515 journal = {Journal of Mathematical Biology}, 20516 volume = {58}, 20517 author = {Kalaidzidis, Y.} 20518 } 20519 @article{Rink2005, 20520 year = {2005}, 20521 title = {Rab Conversion as a Mechanism of Progression 20522 from Early to Late Endosomes}, 20523 pages = {735-749}, 20524 journal = {Cell}, 20525 volume = {122}, 20526 author = {Rink, J. and Ghigo, E. and Kalaidzidis, Y. and Zerial, M.} 20527 } 20528 @inproceedings{Bryne2012, 20529 month = {May 2-5}, 20530 year = {2012}, 20531 title = {MODELS FOR BIOMEDICAL IMAGE RECONSTRUCTION 20532 BASED ON INTEGRAL APPROXIMATION METHODS}, 20533 booktitle = {IEEE International Symposium on Biomedical Imaging}, 20534 pages = {70-73}, 20535 address = {Barcelona, Spain}, 20536 author = {Bryne, C. and Gordon, D. and Heilper, D.}, 20537 organization = {IEEE} 20538 } 20539 @inproceedings{Becker2012, 20540 month = {May 2-5}, 20541 year = {2012}, 20542 title = {FROM TIMELAPSE-DATA TO GENEALOGIC TREES: USING DIFFERENT CONTRAST 20543 MECHANISMS TO IMPROVE CELL TRACKING}, 20544 booktitle = {IEEE International Symposium on Biomedical Imaging}, 20545 pages = {386-389}, 20546 address = {Barcelona, Spain}, 20547 author = {Becker, T. and Rapoport, D.H. and Mamlouk, A.M.}, 20548 organization = {IEEE} 20549 } 20550 @inproceedings{Wang2012, 20551 month = {May 2-5}, 20552 year = {2012}, 20553 title = {A HYBRID TOTAL-VARIATION MINIMIZATION APPROACH TO COMPRESSED SENSING}, 20554 booktitle = {IEEE International Symposium on Biomedical Imaging}, 20555 pages = {74-77}, 20556 address = {Barcelona, Spain}, 20557 author = {Wang, Y. and Liang, D. and Chang, Y. and Ying, L.}, 20558 organization = {IEEE} 20559 } 20560 @inproceedings{Cohen2012, 20561 month = {May 2-5}, 20562 year = {2012}, 20563 title = {IMAGE REGISTRATION ERROR ANALYSIS WITH APPLICATIONS IN SINGLE MOLECULE MICROSCOPY}, 20564 booktitle = {IEEE International Symposium on Biomedical Imaging}, 20565 pages = {966-969}, 20566 address = {Barcelona, Spain}, 20567 author = {Cohen, E.A.K. and Ober, R.J.}, 20568 organization = {IEEE} 20569 } 20570 @inproceedings{Hu2012, 20571 month = {May 2-5}, 20572 year = {2012}, 20573 title = {MITOSIS DETECTION OF HEMATOPOIETIC STEM CELL POPULATIONS IN TIME-LAPSE PHASE-CONTRAST MICROSCOPY IMAGES}, 20574 booktitle = {IEEE International Symposium on Biomedical Imaging}, 20575 pages = {390-393}, 20576 address = {Barcelona, Spain}, 20577 publisher = {IEEE}, 20578 author = {Huh, S. and Eom, S. and Elmer Ker, D.F. and Weiss, L. and Kanade, T.} 20579 } 20580 @inproceedings{Stallinga2012a, 20581 month = {May 2-5}, 20582 year = {2012}, 20583 title = {THE EFFECT OF BACKGROUND ON LOCALIZATION UNCERTAINTY IN SINGLE EMITTER IMAGING}, 20584 booktitle = {IEEE International Symposium on Biomedical Imaging}, 20585 pages = {988-991}, 20586 address = {Barcelona, Spain}, 20587 publisher = {IEEE}, 20588 author = {Stallinga, S. and Rieger, B.} 20589 } 20590 @inproceedings{Wong2012, 20591 month = {May 2-5}, 20592 year = {2012}, 20593 title = {Effect of Time Discretization on the Limit of the 20594 Accuracy of Parameter Estimation for Moving 20595 Single Molecules Imaged by Fluorescence 20596 Microscopy}, 20597 booktitle = {IEEE International Symposium on Biomedical Imaging }, 20598 pages = {1228-1231}, 20599 address = {Barcelona, Spain}, 20600 author = {Wong, Y. and Lin, Z. and Ober, R.J.} 20601 } 20602 @inproceedings{Ducroz2012, 20603 month = {May 2-5}, 20604 year = {2012}, 20605 title = {CHARACTERIZATION OF CELL SHAPE AND DEFORMATION IN 3D USING SPHERICAL HARMONICS}, 20606 booktitle = {IEEE International Symposium on Biomedical Imaging }, 20607 address = {Barcelona, Spain}, 20608 author = {Ducroz, C. and Olivio-Marin, J.-C. and Dufor, A.}, 20609 organization = {IEEE} 20610 } 20611 @techreport{hassanich2012, 20612 month = {Jan}, 20613 year = {2012}, 20614 title = {Nearly Optimal Sparse Fourier Transform}, 20615 address = {arXiv:1201.2501v1 [cs.DS] }, 20616 institution = {Massachusetts Institute of Technology, USA}, 20617 author = {Hassanieh, H. and Indyk, P. and Katabi, D. and Price, E.} 20618 } 20619 @inproceedings{Levet2012, 20620 month = {May 2-5}, 20621 year = {2012}, 20622 title = {AUTOMATIC NON-PARAMETRIC CAPSID SEGMENTATION USING WAVELETS TRANSFORM AND GRAPH}, 20623 booktitle = {IEEE International Symposium on Biomedical Imaging}, 20624 address = {Barcelona, Spain}, 20625 author = {Levert, F. and Cassany, A. and Kann, M. and Sibarita, J.-B.}, 20626 organization = {IEEE} 20627 } 20628 @inproceedings{Jezierska2012, 20629 month = {May 2-5}, 20630 year = {2012}, 20631 title = {POISSON-GAUSSIAN NOISE PARAMETER ESTIMATION IN FLUORESCENCE MICROSCOPY IMAGING}, 20632 booktitle = {IEEE International Symposium on Biomedical Imaging}, 20633 pages = {1663-1666}, 20634 address = {Barcelona, Spain}, 20635 author = {Jezierska, A. and Talbot, H. and Chaux, C. and Pesquet, J.-C. and Engler, G.}, 20636 organization = {IEEE} 20637 } 20638 @article{Vulovic2012, 20639 year = {2012}, 20640 title = {Precise and unbiased estimation of astigmatism and defocus in transmission electron microscopy}, 20641 pages = {115-134}, 20642 journal = {Ultramicroscopy}, 20643 volume = {116}, 20644 author = {Vulovic, M. and Franken, E. and Ravelli, R.B.G. and Vliet, L.J. van and Rieger, B.} 20645 } 20646 @article{Mukamel2012, 20647 year = {2012}, 20648 title = {Statistical Deconvolution for Superresolution Fluorescence Microscopy}, 20649 pages = {2391-2400}, 20650 journal = {Biophysical Journal}, 20651 volume = {102}, 20652 author = {Mukamel, E.A. and Babcock, H. and Zhuang, X.} 20653 } 20654 @article{Fernandez2012, 20655 number = {10}, 20656 year = {2012}, 20657 title = {Computational Methods for Electron Tomography}, 20658 pages = {1010-1030}, 20659 journal = {Micron}, 20660 volume = {43}, 20661 author = {Fernandez, J.-J.} 20662 } 20663 @article{Kopek2012, 20664 number = {16}, 20665 year = {2012}, 20666 title = {Correlative 3D superresolution fluorescence and 20667 electron microscopy reveal the relationship of 20668 mitochondrial nucleoids to membranes}, 20669 pages = {6136-6141}, 20670 journal = {Proceedings of the National Academy of Science USA}, 20671 volume = {109}, 20672 author = {Kopek, B.G. and Shtengel, G. and Shan Xu, C. and Clayton, D.A. and Hess, H.F.} 20673 } 20674 @article{Shtengel2009, 20675 number = {9}, 20676 year = {2009}, 20677 title = {Interferometric fluorescent super-resolution 20678 microscopy resolves 3D cellular ultrastructure}, 20679 pages = {3125-3130}, 20680 journal = {Proceeding of the National Academy of Science USA}, 20681 volume = {106}, 20682 author = {Shtengel, G.and Galbraith, J.A. and Galbraith, C.G. and Lippincott-Schwartz, J. and Gillette, J.M. and Manely, S. and Sougrat, R. and Waterman, C.M. and Knachanawong, P. and Davidson, M.W. and Fetter, R.D. and Hess, H.F.} 20683 } 20684 @misc{materialsmethods, 20685 title = {Materials and methods are available as supplementary material on {Science Online}.} 20686 } 20687 @article{Pavani2008, 20688 number = {26}, 20689 year = {2008}, 20690 title = {Three dimensional tracking of fluorescent microparticles using a photon-limited double-helix response system}, 20691 pages = {22048-22057}, 20692 journal = {Optics Express}, 20693 volume = {16}, 20694 author = {Pavani, S.R.P. and Piestun, R.} 20695 } 20696 @article{Mlodzianoski2011, 20697 number = {16}, 20698 year = {2011}, 20699 title = {Sample drift correction in 3D fluorescence photoactivation localization microscopy}, 20700 pages = {15009-15019}, 20701 journal = {Optics Express}, 20702 volume = {19}, 20703 author = {Mlodzianoski, M.J. and Schreiner, J.M. and Callahan, S.P. and Smolkova, K. and Dlaskova, A. and Santorova, J. and Jezek, P. and Bewersdorf, J.} 20704 } 20705 @article{Heilemann2005, 20706 number = {11}, 20707 year = {2005}, 20708 title = {Carbocyanine dyes as efficient reversible single-molecule optical switch}, 20709 pages = {3801-3806}, 20710 journal = {Journal of the American Chemical Society}, 20711 volume = {127}, 20712 author = {Heilemann, M. and Margeat, E. and Kasper, R. and Sauer, M. and Tinnefeld, P. } 20713 } 20714 @inbook{Frank1980, 20715 year = {1980}, 20716 title = {Computer Processing of Electron Microscope Images}, 20717 pages = {197-233}, 20718 editor = {Hawkes, P.W.}, 20719 chapter = {The Role of Correlation Techniques in Computer Image Processing}, 20720 publisher = {Springer Verlag}, 20721 author = {Frank, J.} 20722 } 20723 @article{Bolte2006, 20724 number = {3}, 20725 year = {2006}, 20726 title = {A guided tour into subcellular colocalization analysis in light microscopy}, 20727 pages = {213-232}, 20728 journal = {Journal of Microscopy}, 20729 volume = {224}, 20730 author = {Bolte, S. and Cordelieres, F.P.} 20731 } 20732 @article{Adler2008, 20733 number = {1}, 20734 year = {2008}, 20735 title = {Replicate-based noise corrected correlation for accurate measurements of colocalization}, 20736 pages = {121-133}, 20737 journal = {Journal of Microscopy}, 20738 volume = {230}, 20739 author = {Adler, J. and Pagakis, S.N. and Parmryd, I.} 20740 } 20741 @article{Ries2012, 20742 number = {6}, 20743 year = {2012}, 20744 title = {A simple, versatile method for {GFP-based} super-resolution microscopy via nanobodies}, 20745 pages = {582-587}, 20746 journal = {Nature Methods}, 20747 volume = {9}, 20748 author = {Ries, J. and Kaplan, C. and Platonova, E. and Eghlidi, H. and Ewers, H.} 20749 } 20750 @article{Neumuller2010, 20751 number = {11}, 20752 year = {2010}, 20753 title = {Photounbinding of Calmodulin from a Family of {CaM} Binding Peptides}, 20754 pages = {14050}, 20755 journal = {PlOS one}, 20756 volume = {5}, 20757 author = {{Neum\"uller}, K.G. and Elsayad, K. and Reisecker, J.M. and Waxham, M.N. and Heinze, K.G.} 20758 } 20759 @article{Mourik2012, 20760 year = {2012}, 20761 title = {Signatures of Majorana Fermions in 20762 Hybrid Superconductor-Semiconductor 20763 Nanowire Devices}, 20764 pages = {1003-1008}, 20765 journal = {Science}, 20766 volume = {336}, 20767 author = {Mourik, V. and Zuo, K. and Frolov, S.M. and Plissard, S.R. and Bakkers, E.P.A.M. and Kouwenhouven, L.P.} 20768 } 20769 @article{Loenhout2012, 20770 number = {10}, 20771 year = {2012}, 20772 title = {Non-Bias-Limited Tracking of Spherical Particles, Enabling Nanometer Resolution at Low Magnification}, 20773 pages = {2362-2371}, 20774 journal = {Biophysical Journal}, 20775 volume = {102}, 20776 author = {Loenhout, M.T.J. van and Kerssemakers, J.W.J. and Vlaminck, I. De and Dekker, C.} 20777 } 20778 @article{Hofmann2005, 20779 number = {49}, 20780 year = {2005}, 20781 title = {Breaking the diffraction barrier in fluorescence microscopy at low light intensities by using reversibly photoswitchable proteins}, 20782 pages = {17565-17569}, 20783 journal = {Proceedings of the National Academy of Sciences USA}, 20784 volume = {102}, 20785 author = {Hofmann, M. and Eggeling, C. and Jakobs, S. and Hell, S.W.} 20786 } 20787 @article{Clifford2007, 20788 number = {6987-69991}, 20789 year = {2007}, 20790 title = {Fluorescence of Single Molecules in Polymer Films: Sensitivity of Blinking to Local Environment}, 20791 journal = {The Journal of Physical Chemistry B Letters}, 20792 volume = {111}, 20793 author = {Clifford, J.N. and Bell, T.D.M. and Tinnefeld, P. and Heilemann, M. and Melnikov, S.M. and Hotta, J.-I. and Sliwa, M. and Dedecker, P. and Sauer, M. and Hofkens, J. and Yeow, E.K.L.} 20794 } 20795 @article{Isack2012, 20796 year = {2012}, 20797 title = {Energy-Based Geometric Multi-model Fitting}, 20798 pages = {123-147}, 20799 journal = {International Journal of Computer Vision}, 20800 volume = {97}, 20801 author = {Isack, H. and Boybov, Y.} 20802 } 20803 @article{Rullgrad2011, 20804 number = {3}, 20805 year = {2011}, 20806 title = {Simulation of transmission electron microscope images of biological specimens}, 20807 pages = {234-256}, 20808 journal = {Journal of Microscopy}, 20809 volume = {243}, 20810 author = {{Rullgr\aad}, H. and {\"Ofverstedt}, L.-G. and Masich, S. and Daneholt, B. and {\"Oktem}, O.} 20811 } 20812 @article{York2012, 20813 number = {7}, 20814 year = {2012}, 20815 title = {Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy}, 20816 pages = {749-754}, 20817 journal = {Nature Methods}, 20818 volume = {9}, 20819 author = {York, A.G. and Parekh, S.H. and Nogare, D.D. and Fischer, R.S. and Temprine, K. and Mione, M. and Chitnis, A.B. and Combs, C.A. and Shroff, H.} 20820 } 20821 @article{Cleveland1979, 20822 number = {368}, 20823 month = {Dec.}, 20824 year = {1979}, 20825 title = {Robust Locally Weighted Regression and Smoothing Scatterplots}, 20826 pages = {829-836}, 20827 journal = {Journal of the American Statistical Association}, 20828 volume = {74}, 20829 author = {Cleveland, W.S.} 20830 } 20831 @book{Erni2010a, 20832 year = {2010}, 20833 title = {Aberration-Corrected Imaging in Transmission Electron Microscopy}, 20834 address = {London, UK}, 20835 publisher = {Imperial College Press}, 20836 author = {Erni, R.} 20837 } 20838 @article{Saghi2012, 20839 year = {2012}, 20840 title = {Electron Tomography in the {(S)TEM}: From Nanoscale 20841 Morphological Analysis to {3D} Atomic Imaging}, 20842 pages = {59-79}, 20843 journal = {Annu. Rev. Mater. Res.}, 20844 volume = {42}, 20845 author = {Saghi, A. and Midgley, P.A.} 20846 } 20847 @article{Midgley2009, 20848 year = {2009}, 20849 title = {Electron tomography and holography in materials science}, 20850 pages = {271-280}, 20851 journal = {Nature Materials}, 20852 volume = {8}, 20853 author = {Midgley, P.A. and Dunin-Borkowski, R.E.} 20854 } 20855 @article{Midgley2003, 20856 year = {2003}, 20857 title = {{3D} electron microscopy in the physical sciences: the development of {Z-contrast} and {EFTEM} tomography}, 20858 pages = {413-431}, 20859 journal = {Ultramicroscopy}, 20860 volume = {96}, 20861 author = {Midgley, P.A. and Weyland, M.} 20862 } 20863 @article{Spontak1988, 20864 year = {1988}, 20865 title = {Three-dimensional study of cylindrical morphology in a styrene-butadiene-styrene block copolymer}, 20866 pages = {387-395}, 20867 journal = {Polymer}, 20868 volume = {29}, 20869 author = {Spontak, R.J. and Williams, M.C. and Agard, D.A.} 20870 } 20871 @article{Friedrich2005, 20872 year = {2005}, 20873 title = {Comparison of intensity distributions in tomograms from {BF TEM, ADF TEM, HAADF STEM}, and calculated tilt series}, 20874 pages = {18-27}, 20875 journal = {Ultramicroscopy}, 20876 volume = {106}, 20877 author = {Friedrich, H. and McCartney, M.R. and Buseck, P.R.} 20878 } 20879 @article{Kubel2005, 20880 number = {5}, 20881 year = {2005}, 20882 title = {Recent Advances in Electron Tomography: {TEM} and {HAADF-STEM} Tomography for Materials Science and Semiconductor Applications}, 20883 pages = {378-400}, 20884 journal = {Microscopy and Microanalysis}, 20885 volume = {11}, 20886 author = {{K\"ubel}, C. and Voigt, A. and Schoenmakers, R. and Otten, M. and Su, D. and Lee, T.-C. and Carlsson, A. and Bradley, J.} 20887 } 20888 @article{Rose1975, 20889 year = {1975}, 20890 title = {Zur Theorie der Bildentstehung im Elektronenmikroskop}, 20891 pages = {217-244}, 20892 journal = {Optik}, 20893 volume = {42}, 20894 author = {Rose, H.} 20895 } 20896 @article{Freitag1981, 20897 year = {1981}, 20898 title = {Resolution and contrast of crystalline objects in high-resolution scanning electron microscopy}, 20899 pages = {407-429}, 20900 journal = {Optik}, 20901 volume = {59}, 20902 author = {Freitag, J. and Rose, H.} 20903 } 20904 @incollection{Nellist2000a, 20905 series = {113}, 20906 year = {2000}, 20907 title = {The principle and interpretation of annular dark-field Z-contrast imaging}, 20908 booktitle = {Advances in Imaging and Electron Physics}, 20909 pages = {147-203}, 20910 author = {Nellist, P.D. and Pennycook, S.J.} 20911 } 20912 @article{Zhu2012, 20913 number = {7}, 20914 year = {2012}, 20915 title = {Faster {STORM} using compressed sensing}, 20916 pages = {721-726}, 20917 journal = {Nature Methods}, 20918 volume = {9}, 20919 author = {Zhu, L. and Zhang, W. and Elnatan, D. and Huang, B.} 20920 } 20921 @article{Zecevic2012, 20922 number = {17}, 20923 year = {2012}, 20924 title = {Mesoporosity of Zeolite {Y}: Quantitative Three-Dimensional Study by Image Analysis of Electron Tomograms}, 20925 pages = {4213-4217}, 20926 journal = {Angewandte Chemie Int. Ed.}, 20927 volume = {51}, 20928 author = {Zecevic, J. and Gommes, C.J. and Friedrich, H. and 20929 Jongh, P.E. de and Jong, K.P. de} 20930 } 20931 @article{Brilot2012, 20932 year = {2012}, 20933 title = {Beam-induced motion of vitrified specimen on holey carbon film}, 20934 pages = {630-637}, 20935 journal = {Journal of Structural Biology}, 20936 volume = {177}, 20937 author = {Brilot, A.F. and Chen, J.Z. and Cheng, A. and Pan, J. and Harrison, S.C .and Potter, C.S. and Carragher, B. and Henderson, R. and Grigorieff, N.} 20938 } 20939 @article{Brettschneider2007, 20940 year = {2007}, 20941 title = {Breaking the Diffraction Barrier in Fluorescence Microscopy by Optical Shelving}, 20942 pages = {218103}, 20943 journal = {Physical Review Letters}, 20944 author = {Bretschneider, S. and Eggeling, C. and Hell, S.W.} 20945 } 20946 @article{Testa2008, 20947 number = {25}, 20948 year = {2008}, 20949 title = {Nanoscale separation of molecular species based 20950 on their rotational mobility}, 20951 pages = {21094-21105}, 20952 journal = {Optics Express}, 20953 volume = {16}, 20954 author = {Testa, I. and {Sch\"onle}, A. and Middendoff, C. von and Geisler, C. and Medda, R. and Wurm, C.A. and Stiel, A.C. and Jakobs, S. and Bossi, M. and Eggeling, C. and Hell, S.W. and Egner, A.} 20955 } 20956 @article{Baddeley2011, 20957 number = {5}, 20958 year = {2011}, 20959 title = {{4D} Super-Resolution Microscopy with Conventional 20960 Fluorophores and Single Wavelength Excitation in 20961 Optically Thick Cells and Tissues}, 20962 pages = {e20645}, 20963 journal = {PLOS one}, 20964 volume = {6}, 20965 author = {Baddeley, D. and Crossman, D. and Rossberger, S. and Cheyne, J.E. and Montgomery, J.M. and Jayasinghe, I.D. and Cremer, C. and Cannell, M.B. and {S\"oller}, C.} 20966 } 20967 @article{Testa2011, 20968 year = {2010}, 20969 title = {Multicolor Fluorescence Nanoscopy in Fixed and Living Cells by Exciting Conventional Fluorophores with a Single Wavelength}, 20970 pages = {2686-2694}, 20971 journal = {Biophysical Journal}, 20972 volume = {99}, 20973 author = {Testa, I. and Wurm, C.A. and Medda, R. and Rothermel, E. and Middendorf, C. von and {F\"olling}, J. and Jakobs, S. and {Sch\"onle}, A. and Hell, S.W. and Eggeling, C.} 20974 } 20975 @article{Gunawerdene2011, 20976 year = {2011}, 20977 title = {Superresolution Imaging of Multiple Fluorescent Proteins with Highly Overlapping Emission Spectra in Living Cells}, 20978 pages = {1522-1528}, 20979 journal = {Biophysical Journal}, 20980 volume = {101}, 20981 author = {Gunewardene, M.S. and Subach, F.V. and Gould, T.J. and Penoncello, G.P. and Gudheti, M.V. and Verkhusha, V.V. and Hess, S.T.} 20982 } 20983 @article{Bohmer2003, 20984 number = {3}, 20985 year = {2003}, 20986 title = {Orientation imaging of single molecules by wide-field epifluorescence microscopy}, 20987 pages = {554-559}, 20988 journal = {Journal of the Optical Society of America B}, 20989 volume = {20}, 20990 author = {{B\"ohmer}, M. and Enderlein, J.} 20991 } 20992 @article{Fitzgerald2012, 20993 year = {2012}, 20994 title = {Estimation Theoretic Measure of Resolution for Stochastic Localization Microscopy}, 20995 pages = {048102}, 20996 journal = {Physical Review Letters}, 20997 volume = {109}, 20998 author = {Fitzgerald, J.E. and Lu, J. and Schnitzer, M.J.} 20999 } 21000 @article{Test2012, 21001 year = {2012}, 21002 title = {Test}, 21003 journal = {bla}, 21004 author = {Ronaldje} 21005 } 21006 @article{Wolter2011, 21007 number = {8}, 21008 month = {April}, 21009 year = {2011}, 21010 title = {Measuring localization performance of super-resolution algorithms on very active samples}, 21011 pages = {7020-7033}, 21012 journal = {Optics Express}, 21013 volume = {19}, 21014 author = {Wolter,S. and Endesfelder, U. and Linde, S. van de and Heilemann, M. and Sauer, M.} 21015 } 21016 @article{Bates2012, 21017 year = {2012}, 21018 title = {Multicolor Super-Resolution Fluorescence Imaging via 21019 Multi-Parameter Fluorophore Detection}, 21020 pages = {99-107}, 21021 journal = {ChemPhysChem}, 21022 volume = {13}, 21023 author = {Bates, M. and Dempsey, G.T. and Chen, K.H. and Zhuang, X.} 21024 } 21025 @article{Linde2010, 21026 year = {2010}, 21027 title = {The effect of photoswitching kinetics and labeling densities on super-resolution 21028 fluorescence imaging}, 21029 pages = {260-266}, 21030 journal = {Journal of Biotechnology}, 21031 volume = {149}, 21032 url = {http://dx.doi.org/10.1016/j.bbr.2011.03.031}, 21033 author = {Linde, S. van de and Wolter, S. and Heilemann, M. and Sauer, M.} 21034 } 21035 @article{Wang2012b, 21036 number = {14}, 21037 year = {2012}, 21038 title = {PALMER: a method capable of parallel localization of multiple emitters for high-density localization microscopy 21039 }, 21040 pages = {16039-16049}, 21041 journal = {Optics Express}, 21042 volume = {20}, 21043 url = {http://www.opticsinfobase.org/oe/abstract.cfm?uri=oe-20-14-16039}, 21044 author = {Wang, Y. and Quan, T. and Zeng, S. and Huang, Z.-L.} 21045 } 21046 @article{Eibauer2012, 21047 year = {2012}, 21048 title = {Unraveling the structure of membrane proteins in situ by transfer function corrected cryo-electron tomography}, 21049 journal = {Journal of Structural Biology}, 21050 author = {Eibauer, M. and Hoffmann, C. and Plitzko, J.M. and Baumeister, W. and Nickell, S. and 21051 Engelhardt, H.} 21052 } 21053 @inbook{Tukey1967, 21054 year = {1967}, 21055 title = {Analysis of time series}, 21056 pages = {25-46}, 21057 editor = {Harris, B.}, 21058 address = {New York}, 21059 chapter = {An introduction to the calculations of numerical spectrum analysis}, 21060 publisher = {Wiley}, 21061 author = {Tukey, J. W.} 21062 } 21063 @article{Ghosh1994, 21064 number = {5}, 21065 month = {May}, 21066 year = {1994}, 21067 title = {Automated detection and tracking of individual and clustered cell surface low density lipoprotein receptor molecules}, 21068 pages = {1301-1318}, 21069 journal = {Biophysical Journal}, 21070 volume = {66}, 21071 author = {Ghosh, R.N. and Webb, W.W.} 21072 } 21073 @article{Lee1991, 21074 number = {14}, 21075 month = {July}, 21076 year = {1991}, 21077 title = {Direct observation of brownian motion of lipids in a membrane}, 21078 pages = {6274-6278}, 21079 journal = {Proceedings of the National Academy of Sciences of the USA}, 21080 volume = {88}, 21081 author = {Lee, G.M. and Ishihara, A. and Jacobson, K.A.} 21082 } 21083 @article{Niessen1996, 21084 month = {July}, 21085 year = {1996}, 21086 title = {Deficiency of the $\beta$4 subunit in junctional epidermolysis bullosa with pyloric atresia: consequences for hemidesmosome formation and adhesion properties}, 21087 pages = {1695-1706}, 21088 journal = {Journal of Cell Science}, 21089 volume = {109}, 21090 author = {Niessen, C.M. and Raaij-Helmer, L.M.H. van der and Hulsman, E.H.M. and Neut, R. van der and Jonkman, M.F. and Sonnenberg, A.} 21091 } 21092 @article{Schaapveld1998, 21093 number = {1}, 21094 month = {July}, 21095 year = {1998}, 21096 title = {Hemidesmosome formation is initiated by the $\beta$4 integrin subunit, requires complex formation of $\beta$4 and H.D1/plectin, and involves a direct interaction between $\beta$4 and the bullous pemphigoid antigen}, 21097 pages = {271-284}, 21098 journal = {Journal of Cell Biology}, 21099 volume = {142}, 21100 author = {Schaapveld, R.Q.J. and Borradori, L. and Geerts, D. and Leusden, M.R. van and Kuikman, I. and Nievers, M.G. and Niessen, C.M. and Steenbergen, R.D.M. and Snijders, P.J.F. and Sonnenberg, A.} 21101 } 21102 @article{Rojo2006, 21103 number = {553-560}, 21104 year = {2006}, 21105 title = {A METHOD TO REMOVE FRINGES FROM IMAGES USING WAVELETS}, 21106 journal = {The Astrophysical Journal}, 21107 volume = {649}, 21108 author = {Rojo, P.M. and Harrington, J.} 21109 } 21110 @article{Donnert2006, 21111 number = {31}, 21112 year = {2006}, 21113 title = {Macromolecular-scale resolution in biological 21114 fluorescence microscopy}, 21115 pages = {11440-11445}, 21116 journal = {Proceedings of the National Academy of Sciences USA}, 21117 volume = {103}, 21118 author = {Donnert, G. and Keller, J. and Medda, R. and Andrei, M.A. and Rizzoli, S.O. and {L\"uhrmann}, R. and Jahn, R. and Eggeling, C. and Hell, S.W.} 21119 } 21120 @article{Faas2012, 21121 number = {3}, 21122 year = {2012}, 21123 title = {Virtual nanoscopy: Generation of ultra-large high 21124 resolution electron microscopy maps}, 21125 pages = {457-469}, 21126 journal = {Journal of Cell Biology}, 21127 volume = {198}, 21128 author = {Faas, F.G.A. and Avramut, M.C. and Berg, B.M. van den and Mommaas, M.A. and Koster, A.J. and Ravelli, R.B.G.} 21129 } 21130 @inbook{Bates2011, 21131 year = {2011}, 21132 title = {Imaging: A Laboratory Manual}, 21133 note = {ISBN 978-0-879699-36-9 }, 21134 editor = {Yuste, R.}, 21135 chapter = {Stochastic Optical Reconstruction Microscopy (STORM): a method for super-resolution fluorescence imaging}, 21136 publisher = {Cold Spring Harbor Laboratory Press}, 21137 author = {Bates, M. and Jones, S.A. and Zhuang, X.} 21138 } 21139 @article{Izeddin2012, 21140 number = {3}, 21141 year = {2012}, 21142 title = {Wavelet analysis for single molecule localization 21143 microscopy}, 21144 pages = {2081-2095}, 21145 journal = {Optics Express}, 21146 volume = {20}, 21147 author = {Izeddin, I. and Boulanger, J. and Racine, V. and Specht, C.G. and Kechkar, A. and Nair, D. and Triller, A. and Choquet, D. and Dahan, M. and Sibarita, J.B.} 21148 } 21149 @article{Parthasarathy2012, 21150 number = {7}, 21151 year = {2012}, 21152 title = {Rapid, accurate particle tracking by calculation of radial symmetry centers}, 21153 pages = {724-726}, 21154 journal = {Nature Methods}, 21155 volume = {9}, 21156 author = {Parthasarathy, R.} 21157 } 21158 @article{Mukamel2012a, 21159 year = {2012}, 21160 title = {Unified Resolution Bounds for Conventional and Stochastic Localization Fluorescence Microscopy}, 21161 pages = {168102}, 21162 journal = {Physical Review Letters}, 21163 volume = {109}, 21164 author = {Mukamel, E.A. and Schnitzer, M.J.} 21165 } 21166 @article{Lippincott2009, 21167 number = {1}, 21168 year = {2009}, 21169 title = {Putting super-resolution fluorescence microscopy to 21170 work}, 21171 pages = {21}, 21172 journal = {Nature Methods}, 21173 volume = {6}, 21174 author = {Lippincott-Schwartz, J. and Manley, S.} 21175 } 21176 @article{Veatch2012, 21177 number = {2}, 21178 month = {February}, 21179 year = {2012}, 21180 title = {Correlation functions quantify super-resolution images and estimate apparent clustering due to over-counting}, 21181 pages = {e31457}, 21182 journal = {Plos ONE}, 21183 volume = {7}, 21184 author = {Veatch, S.L. and Machta, B.B. and Shelby, S.A. and Chiang, E.N. and Holowka, D.A. and Baird, B.A.} 21185 } 21186 @article{Huang2010, 21187 year = {2010}, 21188 title = {Breaking the Diffraction Barrier: 21189 Super-Resolution Imaging of Cells}, 21190 pages = {1047-1058}, 21191 journal = {Cell}, 21192 volume = {143}, 21193 author = {Huang, B. and Babcock, H. and Zhuang, X.} 21194 } 21195 @article{Anselmi2011, 21196 number = {49}, 21197 year = {2011}, 21198 title = {Three-dimensional imaging and photostimulation by 21199 remote-focusing and holographic light patterning}, 21200 pages = {19504-19509}, 21201 journal = {Proceedings of the National Academy of Sciences U.S.A.}, 21202 volume = {108}, 21203 author = {Anselmi, F. and Ventalon, C. and Begue, Ogden, D. and Emiliani, V.} 21204 } 21205 @article{Botcherby2007, 21206 number = {14}, 21207 year = {2007-2009}, 21208 title = {Aberration-free optical refocusing in high 21209 numerical aperture microscopy}, 21210 pages = {2007}, 21211 journal = {Optics Letters}, 21212 volume = {32}, 21213 author = {Botcherby, E.J. and juskaitis, R. and Booth, M.J. and Wilson, T.} 21214 } 21215 @article{Wolter2012, 21216 number = {11}, 21217 year = {2012}, 21218 title = {{rapidSTORM}: accurate, fast open-source software for localization microscopy}, 21219 pages = {1040-1041}, 21220 journal = {Nature Methods}, 21221 volume = {9}, 21222 author = {Wolter, S. and {L\"oschberger}, A. and Holm, T. and Aufmkolk, S. and Dabauvalle, M.-C. and Linde, S. van de and Sauer, M.} 21223 } 21224 @article{Manders1992, 21225 year = {1992}, 21226 title = {Dynamics of three-dimensional replication patterns during the S-phase, analysed by double labelling of DNA and confocal microscopy}, 21227 pages = {857-862}, 21228 journal = {Journal of Cell Science}, 21229 volume = {103}, 21230 author = {Manders, E.M.M. and Stap, J. and Brakenhoff, G.J. and Driel, R. van and Aten, J.A.} 21231 } 21232 @article{Adler2010, 21233 number = {8}, 21234 year = {2010}, 21235 title = {Quantifying Colocalization by Correlation: The Pearson Correlation Coefficient is Superior to the Mander's Overlap Coefficient}, 21236 pages = {733-742}, 21237 journal = {Cytometry Part A}, 21238 volume = {77A}, 21239 author = {Adler, J. and Parmryd, I.} 21240 } 21241 @article{Annibale2012_OpticalNanoscopy, 21242 number = {9}, 21243 year = {2012}, 21244 title = {Identification of the factors affecting co-localization precision for quantitative multicolor localization microscopy}, 21245 journal = {Optical Nanoscopy}, 21246 volume = {1}, 21247 author = {Annibale, P. and Scarselli, M. and Greco, M. and Radenovic, A.} 21248 } 21249 @article{Parmryd2003, 21250 number = {1}, 21251 year = {2003}, 21252 title = {Imaging metabolism of phosphatidylinositol 4,5-bisphosphate in T-cell 21253 GM1-enriched domains containing Ras proteins}, 21254 pages = {27-38}, 21255 journal = {Experimental Cell Research}, 21256 volume = {285}, 21257 author = {Parmryd, I. and Adler, J. and Patel, R. and Magee, A.I.} 21258 } -
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