[1] | Materials and methods are available as supplementary material on Science Online. |
[2] | Summer school on stereology and geometric tomography. www, 20-25 May 2000. Sandberg Manor, Denmark. |
[3] | S. van Aaarts, K.J. Batenburg, M.D. Rossell, R. Erni, and G. van Tendeloo. Three-dimensional atomic imaging of crystalline nanoparticles. Nature, 2011. |
[4] | F.J. Garcia de Abajo. Optical excitations in electron microscopy. REVIEWS OF MODERN PHYSICS, 82:209-275, 2010. |
[5] | E. Abbe. Beiträge zur Theorie des Mikroskopes und der mikroskopischen Wahrnehmung. Arch Mikrosk Anat, 9:413-468, 1873. |
[6] | J.A. Abels, F. Moreno-Herreo, T. van der Heijden, C. Dekker, and N.H. Dekker. Single-molecule measurements of the persistence length of double-stranded RNA. Biophysical Journal, 88:2737-2744, 2005. |
[7] | A.V. Abraham, S. Ram, J. Chao, E.S. Ward, and R.J. Ober. Quantitative study of single molecule location estimation techniques. Optics Express, 17(26):23352-23373, 2009. |
[8] | M. Abramowitz and I.A. Stegun. Handbook of Mathematical Functions. Dover Publications, 1973. |
[9] | Scott T. Acton and Dipti Prasad Mukherjee. Area operators for edge detection. Pattern Recognition Letters, 21:771-777, 2000. |
[10] | Scott T. Acton and Dipti Prasad Mukherjee. Scale space classification using area morphology. IEEE Transactions on Image Processing, 9(4):623-635, April 2000. |
[11] | S.T. Acton. Fast algorithms for area morphology. Digital Signal Processing, 11:187-203, 2001. |
[12] | G. Adam and M. Delbrück. Structural Chemistry and Molecular Biology, chapter Reduction of Dimensionality in Biological Diffusion Processes, pages 198-215. Freeman, San Francisco, USA, 1968. |
[13] | R. Adams. Radial decomposition of discs and spheres. CVGIP: Graphical Models and Image Processing, 55(5):325-332, 1993. |
[14] | R.L. Adams and S.R. Wente. Uncovering nuclear pore complexity with innovation. Cell, 152(6):1218-1221, 2013. |
[15] | E.H. Adelson and J.Y.A. Wang. Single lens stereo with a plenoptic camera. IEEE Transactions on Pattern Analysis and Machine Intelligence, 14(2):99-106, 1992. |
[16] | S. Adhikari, M. Selmke, and F. Cichos. Temperature dependent single molecule rotational dynamics in PMA. Phys. Chem. Chem. Phys., 13:1849-1856, 2011. |
[17] | J. Adler, S.N. Pagakis, and I. Parmryd. Replicate-based noise corrected correlation for accurate measurements of colocalization. Journal of Microscopy, 230(1):121-133, 2008. |
[18] | J. Adler and I. Parmryd. Quantifying colocalization by correlation: The pearson correlation coefficient is superior to the mander's overlap coefficient. Cytometry Part A, 77A(8):733-742, 2010. |
[19] | s. van Aert, J.H. Chen, and D. van Dyck. Linear versus non-linear structural information limit in high-resolution transmission electron microscopy. Ultramicroscopy, 110:1404-1410, 2010. |
[20] | S. van Aert, A.J. den Dekker, and D. van Dyck. How to optimize the experimental design of quantitative atomic resolution TEM experiments? Micron, 35:425-429, 2004. |
[21] | S. van Aert, A.J. den Dekker, D. van Dyck, and A. van den Bos. High-resolution electron microscopy and electron tomography: resolution versus precision. Journal of Structural Biology, 138:21-33, 2002. |
[22] | S. van Aert, A.J. den Dekker, D. van Dyck, and A. van den Bos. Optimal experimental design of STEM measurement of atom column positions. Ultramicroscopy, 90:273-289, 2002. |
[23] | S. van Aert, D. van Dyck, and A.J. den Dekker. Resolution of coherent and incoherent imaging systems reconsidered - classical criteria and a statistical alternative. Optics Express, 14(9):3830-3839, 2006. |
[24] | A. Agrawal, S. Quirin, G. Grover, and R. Piestun. Limits of 3D dipole localization and orientation estimation for single-molecule imaging: towards Green's tensor engineering. Optics Express, 20(24):26668-26680, 2012. |
[25] | A.V. Agronskaia, J.A. Valtentijn, L.F. van Driel, C. Schneidenberg, B.M. Humbel, P. Henegouwen, A.J. Verkleij, A.J. Koster, and H.C. Gerritsen. Integrated fluorescence and transmission electron microscopy. Journal of Structural Biology, 164(2):183-189, 2008. |
[26] | A.S. Aguado, E. Montiel, and M.S. Nixon. Bias error analysis of the generalised Hough transform. Journal of Mathematical Imaging and Vision, 12(1):25-42, 2000. |
[27] | A.S. Aguado, E. Montiel, and M.S. Nixon. On the intimate relationship between the principle of duality and the Hough transform. Proceedings of the Royal Society London A, 456(1995):503-526, 2000. |
[28] | A.S. Aguado, M.E. Montiel, and M.S. Nixon. Ellipse detection via gradient direction in the Hough transform. In Fifth International Conference on Image Processing and its Applications, pages 375-378, 4-6 July 1995. |
[29] | A.S. Aguado, M.E. Montiel, and M.S. Nixon. Improving parameter space decomposition for the generalised Hough transform. In International Conference on Image Processing, volume 3, pages 627-630, 16-19 September 1996. |
[30] | A.S. Aguado, M.E. Montiel, and M.S. Nixon. Arbitrary shape Hough transform by invariant geometric features. In International Conference on Systems, Man and Cybernetics, volume 3, pages 2661-2665. IEEE, 12-15 October 1997. |
[31] | F. Aguet, S. Geissbuhler, I. Marki, T. Lasser, and M. Unser. Super-resolution orientation estimation and localization of fluorescent dipoles using 3-d steerable filters. Optics Express, 17(8):6829, 2009. |
[32] | F. Aguet, D. van de Ville, and M. Unser. Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes. Optics Express, 13(26):10503-10522, 2005. |
[33] | J.M. Aguilera and D.W. Stanley. Microstructural Principles of Food Processing and Engineering. Aspen Publishers, Inc., second edition, 1999. |
[34] | N. Ahmed, T. Natarajan, and K.R. Rao. Discrete cosine transform. IEEE Transactions on Computers, 23:88-93, January 1974. |
[35] | V.C. Aitken and H.M. Schwartz. A comparison of rotational representation in structure and motion estimation for maneuvering objects. IEEE Transactions on Image Processing, 4(4):516-520, 1995. |
[36] | Z. Akase and D. Shindo. In situ lorentz microscopy in an alternating magnetic field. Journal of Electron Microscopy, pages 1-75, 2010. |
[37] | A. Akhmanova and M.O. Steinmetz. Tracking the ends: a dynamic protein network controls the fate of microtubule tips. Nature Reviews Molecular Cell Biology, 9:309-322, 2008. |
[38] | F. Alber, S. Dokudovskaya, L.M. Veenhoff, W. Zhang, D. Kipper, J. nad Devos, A. Suprapto, O. Karni-Schmidt, R. Williams, B.T. Chait, A. Sali, and M.P. Rout. The molecular architecture of the nuclear pore complex. Nature, 450:695-701, 2007. |
[39] | F. Alber, S. Dokudovskaya2, L.M. Veenhoff, W. Zhang, J. Kipper, D. Devos, A. Suprapto, O. Karni-Schmidt, R. Williams, B.T. Chait, M.P. Rout, and A. Sali. Determining the architectures of macromolecular assemblies. Nature, 450:683-694, 2007. |
[40] | A. Aldroubi and K. Gröchenig. Nonuniform sampling and reconstruction in shift-invariant spaces. SIAM Review, 43(4):585-620, 2001. |
[41] | N. Alem, R. Erni, C. Kisielowski, M.D. Rosell, W. Gannett, and A. Zettl. Atomically thin hexagonal boron nitride probed by ultrahigh-resolution transmission electron microscopy. Physics Review B, 80:155425, 2009. |
[42] | Jean-Francois Allemand, David Bensimon, and Vincent Croquette. Stretching DNA and RNA to probe their interactions with proteins. Current Opinion in Structural Biology, 13:266-274, 2003. |
[43] | L.J. Allen, S.D. Findlay, A.R. Lupini, M.P. Oxley, and S.J. Pennycook. Atomic resolution electron energy loss spectroscopy imaging in aberration corrected scanning transmission electron microscopy. Physical Review Letters, 91:105503, 2003. |
[44] | D. Alloyeau, B. Freitag, S. Dag, L.W. Wang, and C. Kisielowski. Atomic-resolution three-dimensional imaging of germanium self-interstitials near a surface: Aberration-corrected transmission electron microscopy. Physical Review B, 80:014114, 2009. |
[45] | D. Alloyeau, W.K. Hsieh, E.H. Anderson, L. Hilken, G. Benner, X. Meng, F.R. Chen, and C. Kisielowski. Imaging of soft and hard materials using a boersch phase plate in a transmission electron microscope. Ultramicroscopy, 110:563-570, 2010. |
[46] | A. Almansa and T. Lindeberg. Fingerprint enhancement by shape adaptation of scale-space operators with automatic scale selection. Technical report, University of the Republic of Uruguay, 1998. |
[47] | L.B. Almeida. The fractional Fourier transform and time-frequency representations. IEEE Transactions on Signal Processing, 42(11):3084-3091, November 1994. |
[48] | M.P. Almeida. Anisotropic textures with arbitrary orientation. Journal of Mathematical Imaging and Vision, 7:241-251, 1997. |
[49] | L. Alvarez, P. Lions, and J. Morel. Image selective smoothing and edge detection by nonlinear diffusion II. SIAM J. Numer. Anal., 29(3):845-866, June 1992. |
[50] | L. Alvarez and J.-M. Morel. Morphological approach to multi-scale analysis: From principles to equations. In M. A. Viergever, editor, Geometry-Driven Diffusion in Computer Vision. Kluwer Academic Publishers, Dordrecht, 1994. |
[51] | A. Ammouche, J. Riss, D. Breysse, and J. Marchand. Image analysis for the automated study of microcracks in concrete. Cement & Concrete Composites, 23:267-278, 2001. |
[52] | M. Andersson, J. Wiklund, and H. Knutsson. Sequential filter trees for efficient 2D, 3D and 4D orientation estimation. Technical report, Linköping University, 1998. |
[53] | M. Andersson, J. Wiklund, and H. Knutsson. Filter networks. Technical report, Linköping University, 1999. |
[54] | M.T. Andersson. Controllable Multidimensional Filters and Models in Low Level Computer Vision. PhD thesis, Linköping University, Linköping, Sweden, 1992. |
[55] | R. Ando, H. Muzuno, and A. Miyawaki. Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting. Science, 306:1370-1373, 2004. |
[56] | S. Ando. Consistent gradient operators. IEEE Transactions on Pattern Analysis and Machine Intelligence, 22(3):252-265, March 2000. |
[57] | N. L. Andrews, K. A. Lidke, J. R. Pfeiffer, A. R. Burns, B. S. Wilson, J. M. Oliver, and D. S. Lidke. Actin restricts FcεRI diffusion and facilitates antigen-induced receptor immobilization. Nature Cell Biology, 10(8):955-963, 2008. |
[58] | P. Andrey and P. Tarroux. Unsupervised segmentation of Markov random field modeled textured images using selectionist relaxation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 20(3):252-262, March 1998. |
[59] | P. Annibale, M. Scarselli, M. Greco, and A. Radenovic. Identification of the factors affecting co-localization precision for quantitative multicolor localization microscopy. Optical Nanoscopy, 1(9), 2012. |
[60] | P. Annibale, S. Vanni, M. Scarelli, U. Rothlisberger, and A. Radenovic. Identification of clustering artifacts in photoactivated localization microscopy. Nature Methods, 8(7):527-528, 2011. |
[61] | P. Annibale, S. Vanni, M. Scarselli, U. Rothlisberger, and A. Radenovic. Quantitative photo activated localization microscopy: Unraveling the effects of photoblinking. PLoS ONE, 6(7):e22678, 2011. |
[62] | F. Anselmi, C. Ventalon, D. Begue, Ogden, and V. Emiliani. Three-dimensional imaging and photostimulation by remote-focusing and holographic light patterning. Proceedings of the National Academy of Sciences U.S.A., 108(49):19504-19509, 2011. |
[63] | A. Anwander, B. Neyran, and A. Baskurt. Segmentation of crystals in microscopic images using multi-scale color gradient (mcg). In International Conference on Color in Graphics and Image Processing CGIP2000, 2000. |
[64] | K. Aoyama, T. takagi, A. Hirase, and A. Miyazawa. Stem tomography for thick biological specimens. Ultramicroscopy, 109:70-80, 2008. |
[65] | N. Arhel, A. Genovesio, K.A. Kim, S. Miko, E. Perret, J.C. Olvio-Marin, S. Shorte, and P. Charneau. Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes. Nature methods, 3(10):817-824, 2006. |
[66] | Gil Ariel and David Andelman. Persistence length of a strongly charged rodlike polyelectrolyte in the presence of salt. Physical Review E, 67(1):011805-1-011805-11, 2003. |
[67] | Andrea M. Armani, Rajan P. Kulkarni, Scott E. Fraser, Richard C. Flagan, and Kerry J. Vahala. Label-Free, Single-Molecule Detection with Optical Microcavities. Sciencexpress, 2007. |
[68] | M. R. Armstrong, K. Boyden, N.D. Browning, G.H. Campbell, J.D. Colvin, W.J. DeHope, A.M. Frank, F. hartemann, J.S. Kim, W.E. King, T.B. LaGrange, B.J. Pyke, B.W. Reed, M. Shuttleswoth, B.C. Stuart, and B.R. Torralava. Practical considerations for high spatial and temporal resolution dynamic transmission electron microscopy. Ultramicroscopy, 107:356-367, 2007. |
[69] | D. J. Arndt-Jovin, M. A Lopez-Quintela, D. S. Lidke, M. J. Rodríguez, F. M. Santos, K. A. Lidke, G. M. Hagen, and T. M. Jovin. In vivo cell imaging with semiconductor quantum dots and noble-metal nanodots. Proc. of SPIE, 6096, 60960P, 2006. |
[70] | D.J. Arndt-Jovin, D.S. Lidke, K.A. Lidke, B. Rieger, and T.M. Jovin. Quantum dots shed light on processes in living cells. SPIE Newsroom, DOI: 10.1117/2.1200605.0228:1-3, 2006. |
[71] | M.R. Arnison, C.J. Cogswell, C.J.R. Sheppard, and P. Törörk. Wavefront Coding Fluorescence Microscopy Using High Aperture Lenses. Optical imaging and microscopy - Techniques and Advanced Systems. Springer-Verlag, Heidelberg,, 2003. |
[72] | M.R. Arnison and C.J.R. Sheppard. A 3d vectorial optical transfer function suitable for arbitrary pupil functions. Optics Communications, 211:53-63, 2002. |
[73] | M. Aronsson. On 3D Fibre Measurement of Digitized Paper. PhD thesis, Swedish University of Agricultural Science, Uppsala, Sweden, 2002. |
[74] | I. Arslan, J.R. Tong, and P.A. Midgley. Reducing the missing wedge: High-resolution dual axis tomography of inorganic materials. Ultramicroscopy, 106:944-1000, 2006. |
[75] | I. Arslan, T.J.V. Yates, N.D. Browning, and P.A. Midgley. Embedded nanostructures revealed in three dimensions. Sciences, 309:2195-2198, 2005. |
[76] | R.J. van Asselt. Line and edge characterisation using mallat wavelets. Master's thesis, Pattern Recognition Group, Faculty of Applied Physics, Delft University of Technology, Delft, 1997. |
[77] | T.J. Atherton and D.J. Kerbyson. Using phase to represent radius in the coherent circle Hough transform. IEE Colloquium on Hough Transforms, 1993. |
[78] | K. Atusuzawa and et al. High-contrast imaging of plastic-embedded tissues by phase contrast electron microscopy. Journal of Electron Microscopy, 58:35-45, 2009. |
[79] | C. van der Avoort, J.J.M. Braat, P. Dirksen, and A.J.E.M. Janssen. Aberration retrieval from the intensity point-spread function in the focal region using the extended Nijboer-Zernike approach. Journal of Modern Optics, 52(12):1695-1728, 2005. |
[80] | D. Axelrod. Carbocyanine dye orientation in red cell membrane studied by microscopic fluorescence polarization. Biophysical Journal, 26:557-574, 1979. |
[81] | D. Axelrod. Fluorescence polarization microscopy. Methods in Cell Biology, 30:333-352, 1989. |
[82] | D. Axelrod. Total internal reflection fluorescence microscopy in cell biology. Traffic, 2:764-774, 2001. |
[83] | D. Axelrod, D.E. Koppel, J. Schlesinger, E. Elson, and W.W. Webb. Mobility measurement by analysis of fluorescence photobleaching recovery kinetics. Biophysical Journal, 16:1055-1069, 1976. |
[84] | H. Bårman. Hierarchical Curvature Estimation in Computer Vision. PhD thesis, Linköping University, Sweden, 1991. |
[85] | H. Bårman, G. H. Granlund, and H. Knutsson. Estimation of curvature in 3-D images using tensor field filtering. In O. Faugeras, editor, Computer Vision - ECCV90. Proceedings, 1990, pages 563-565. Springer-Verlag, 1990. |
[86] | H. Bårman, L. Haglund, G. H. Granlund, and H. Knutsson. Estimation of velocity, acceleration and disparity in time sequences. In Proc. Conf. Pattern Recognition ICPR'91, pages 44-51, 1991. |
[87] | K. Baba, N. Teryama, T. Yoshimizu, N. Ichise, and N. Tanaka. An auto-tunning method for focusing and astigmatism correction in haadf-stem, based on the image contrast transfer function. Journal of Electron Micrsocopy, 50:163-176, 2001. |
[88] | J. Babaud, A.P. Witkin, M. Baudin, and R.O. Duda. Uniqueness of the Gaussian kernel for scale-space filtering. IEEE Transactions on Pattern Recognition and Machine Intelligence, 8(1):26-33, January 1986. |
[89] | K. Bacia and P. Schwille. A dynamic view of cellular processes by in vivo fluorescence auto- and cross-correlation spectroscopy. Methods, 29(1):74-85, 2003. |
[90] | A. D. Back and A. S. Weigend. A first application of independent component analysis to extracting structure from stock returns. International Journal of Neural Systems, 8(4):473-484, Aug 1997. |
[91] | A.S. Backer, M.P. Backlund, M.D. Lew, and W.E. Moerner. Single-molecule orientation measurements with a quadrated pupil. Optics Letters, 38:1521-1523, 2013. |
[92] | M.P. Backlund, M.D. Lew, A.S. Backer, S.J. Sahl, G. Grover, A. Agrawal, R. Piestun, and W.E. Moerner. Simultaneous, accurate measurement of the 3D position and orientation of single molecules. Proceedings of the National Academy of Sciences USA, 109(47):19087-19092, 2012. |
[93] | A. Baddeley. Spatial sampling and censoring. Some chapter. From www. |
[94] | A.J. Baddeley and R.D. Gill. Kaplan-meier estimators for interpoint distance distributions for spatial point processes. Annals of Statistics 25, 25:263-292, 1997. |
[95] | D. Baddeley, M.B. Cannell, and C. Soeller. Visualization of localization microscopy data. Microscopy and Microanalysis, 16:64-72, 2010. |
[96] | D. Baddeley, D. Crossman, S. Rossberger, J.E. Cheyne, J.M. Montgomery, I.D. Jayasinghe, C. Cremer, M.B. Cannell, and C. Söller. 4D super-resolution microscopy with conventional fluorophores and single wavelength excitation in optically thick cells and tissues. PLOS one, 6(5):e20645, 2011. |
[97] | A.N. Bader, S. Hoetzl, E.G. Hofman, J. Voortman, P.M.P. van Bergen en Henegouwen, G. van Meer, and H.C. Gerritsen. Homo-fret imaging as a tool to quantify protein and lipid clustering. ChemPhysChem, 12:475-483, 2011. |
[98] | A.N. Bader, E.G. Hofman, P.M.P. van Bergen en Henegouwen, and H.C. Gerritsen. Imaging of protein cluster sizes by means of confocal time-gated fluorescence anisotropy microscopy. Optics Express, 15(11):6934-6945, 2007. |
[99] | A.N. Bader, E.G. Hofmann, J. Voortman, P.M.P. van Bergen en Henegouwen, and H.C. Gerritsen. Homo-fret imaging enables quantification of protein cluster sizes with subcellular resolution. Biophysical Journal, 97:2613-2622, 2009. |
[100] | M. Badieirostami, M.D. Lew, M.A. Thompson, and W.E. Moerner. Three-dimensional localization precision of the double-helix point spread function versus astigmatism and biplane. Applied Physics Letters, 97(16), October 2010. |
[101] | K. Bahlmann and S.W. Hell. Depolarization by high aperture focusing. Applied Physics Letters, 77(5):612-614, 2000. |
[102] | A.S. Bahn, J.E., G.A. Schwind, and Swanson. Range of validity of field emission equations. Journal of Vaccuum Science Technology B, 26(6):2080-2084, 2008. |
[103] | B. Bailey, D.A. Agard, J.W. Sedat, M. Barfels, H. Chao, and P.E. Mooney. Performance evaluation of a transmission scintillator-based lens-coupled 4k ccd camera for use in low-dose electron cryo-microscopy. Mircoscopy Mircoanal, 10:S2, 2004. |
[104] | D.H. Bailey. FFTs in external or hierarchical memory. The Journal of Supercomputing, 4:23-35, 1990. |
[105] | P. Bakker. Image structure analysis for seismic interpretation. PhD thesis, Delft University of Technology, The Netherlands, 2002. |
[106] | P. Bakker, P.W. Verbeek, and L.J. van Vliet. Edge preserving orientation adaptive filtering. In M. Boasson, J.A. Kaandorp, J.F.M. Tonino, and M.G. Vosselman, editors, ASCI'99, Proc. 5th Annual Conference of the Advanced School for C omputing and Imaging (Heijen, The Netherlands), pages 207-213. ASCI, Delft, 1999. |
[107] | P. Bakker, P.W. Verbeek, and L.J. van Vliet. Analysis and detection of 3-d curvilinear structures. In L.J. van Vliet, J.W.K. Heijnsdijk, T. Kielmann, and P.M.W. Knijnenburg, editors, ASCI'01 (Heijen, The Netherlands), pages 35-40. ASCI, May 30-june 1 2001. |
[108] | P. Bakker, P.W. Verbeek, and L.J. van Vliet. Confidence and curvature estimation of curvilinear structures in 3-D. In ICCV'01 (Vancouver, Canada), volume II, pages 139-144. IEEE, July 9-12 2001. |
[109] | P. Bakker, L.J. van Vliet, and P.W. Verbeek. Edge preserving orientation adaptive filtering. In Conference on Computer Vision and Pattern Recognition, volume 2, pages 535-540, Los Alamitos, CA, USA, 1999. IEEE Computer Society Press. |
[110] | C. Baldock, C.J. Gilpin, A.J. Koster, U. Ziese, K.E. Kadler, C.M. Kielty, and D.F. Holmes. Three-dimensional reconstructions of extracellular matrix polymers using automated electron tomography. Journal of Structural Biology, 138:130-136, 2002. |
[111] | J.M. Baldwin, R. Henderson, E. Backman, and F. Zemlin. Images of purple membrane at 2.8å resolution obtained by cryo-electron microscopy. Journal of Molecular Biology, 202:585-591, 1988. |
[112] | D.H. Ballard. Generalizing the Hough transform to detect arbitrary shapes. Pattern Recognition, 13(2):111-122, 1981. |
[113] | D.H. Ballard and D. Sabbah. Viewer independent shape recognition. IEEE Transactions on Pattern Analysis and Machine Intelligence, 5(6):653-660, 1983. |
[114] | C. Ballerster, M. Bertalmio, V. Caselles, G. Sapiro, and J. Verdera. Filling-in by joint interpolation of vector fields and gray levels. IEEE Transactions on Image Processing, 10(8):1200-1211, August 2001. |
[115] | M. Balzarini, S. Nicula, D. Mattiello, and E. Aliverti. Quantification and description of fracture network by MRI image analysis. Magnetic Resonance Imaging, 19:539-541, 2001. |
[116] | B.E. Bammes, J. Jakana, M.F. Schmid, and W. Chiu. Radiation damage effects at four specimen temperatures from 4 k to 100 k. Journal of Structural Biology, 2009. |
[117] | N. Ban, P. Nissen, J. Hansen, P.B. Moore, and T.A. Steitz. The complete atomic structure of the large ribosomal subunit at 2.4 å resolution. Science, 289:905-920, 2000. |
[118] | J.A. Bangham, T.G. Campbell, and R.V. Aldridge. Multiscale median and morphological filters for 2d pattern recognition. Signal Processing, 38(3):387-415, 1994. |
[119] | J.A. Bangham, P. Chardaire, C.J. Pye, and P.D. Ling. Multiscale nonlinear decomposition: The sieve decomposition theorem. IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(5):529-539, May 1996. |
[120] | J.A. Bangham, P.D. Ling, and R. Harvey. Scale-space from nonlinear filters. IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(5):520-528, 1996. |
[121] | N. Banterle, K.H. Bui, E.A. Lemke, and M. Beck. Fourier ring correlation as a resolution criterion for super-resolution microscopy. Journal of Structural Biology, 2013. |
[122] | Paul Bao, Anthony G. Frutor, Charles Greef, Joydeep Lahiri, Uwe Muller, Todd C. Peterson, Laurence Warden, and Xinying Xie. High-Sensitivity Detection of DNA Hybridization on Microarrays Using Resonance Light Scattering. Analytical Chemistry, 74(8):1792-1979, 2002. |
[123] | L.A. Baranova and S.Y. Yavor. The optics of round and multipole electrostatic lenses. Advances in electronics and electron physics, 76:1-207, 2004. |
[124] | D. Barash. A fundamental relationship between bilateral filtering, adaptive smoothing, and the nonlinear diffusion equation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(6):844-847, 2002. |
[125] | C.B. Barber, D.P. Dobkin, and H. Huhdanpaa. The quickhull algorithm for convex hulls. ACM Transactions on Mathematical Software, 22(4):469-483, December 1996. |
[126] | P. Barham. The Science of Cooking. Springer, Berlin, Heidelberg, New York, 2001. |
[127] | S.T. Barnard and W.B. Thompson. Disparity analysis of images. IEEE Transactions on Pattern Analysis and Machine Intelligence, 2(4):527-534, July 1980. |
[128] | H. H. Barrett, J.L. Denny, R.F. Wagner, and K.J. Myers. Objective assessment of image quality. ii. fisher information, fourier crosstalk, and figures of merit for task performance. Journal of the Optical Society of America A, 12(5):834-853, 1995. |
[129] | H.H. Barrett and W. Swindell. Radiological Imaging; The Theory of Image Formation, Detection, and Processing. Academic Press, 1981. |
[130] | J.L. Barron, D.J. Fleet, and S. Beauchemin. Performance of optical flow techniques. International Journal of Computer Vision, 12(1):43-77, 1994. |
[131] | D.A. Barry, J.-Y. Parlange, L. Li, H. Prommer, C.J. Cunningham, and F. Stagnitti. Analytical approximations for real values of the Lambert W-function. Mathematics and Computers in Simulation, 53(1-2):95-103, 2000. |
[132] | A. Barsic and R. Piestun. Super-resolution of dense nanoscale emitters beyond the diffraction limit using spatial and temporal information. Applied Physics Letters, 102:231103, 2013. |
[133] | E. Barth. The minors of the structure tensor. In G. Sommer, N. Krger, and C. Perwass, editors, Mustererkennung 2000, pages 221-228, Berlin, 2000. Springer. |
[134] | E. Barth, T. Caelli, and C. Zetzsche. Image encoding, labeling, and reconstruction from differential geometry. Graphical Models and Image Processing, 55(6):428-446, 1993. |
[135] | J.E. Barth and P. Kruit. Addition of different contributions to the charged particle probe size. Optik, 101:101-109, 1996. |
[136] | J. Barthel and A. Thust. Ultra-precise measurement of optical aberrations for sub-ångstrom HRTEM. In Dreiländertagung, 28 August - 2 September, Davos, Zwitserland, 2005. |
[137] | J. Barthel and A. Thust. Quantification of the information limit of transmission electron microscopes. Physical Review Letters, 101:200801, 2008. |
[138] | J. Barthel and A. Thust. Aberration measurement in HRTEM: Implementation and diagnostic use of numerical procedures for the highly precise recognition of diffractogram patterns. Ultramicroscopy, 111:27-46, 2010. |
[139] | A.P. Bartko, K. Xu, and R.M. Dickson. Three-dimensional single molecule rotational diffusion in glassy state polymer films. Physical Review Letters, 89(2):026101, 2002. |
[140] | J. Bartle and E. Plies. Energy width reduction using an electrostatic omega-monochromator. Physics Procedia, 1:479, 2008. |
[141] | B. Barton, D. Rhinow, A. Walter, R. Schröder, G. Benner, E. Majorovits, and M. Matijevic. In-focus electron microscopy of frozen-hydrated biological samples with a boersch phase plate. Ultramicroscopy, 111:1696-1705, 2011. |
[142] | M Bass, editor. Handbook of Optics II. McGraw-Hill, New York, 1995. |
[143] | I.H. Bastiaens and T.M. Jovin. Fluorescence resonance energy transfer microscopy. In Cell Biology: A Laboratory Handbook, pages 99-117. Academic Press, New York, second edition, 1998. |
[144] | P.I.H. Bastiaens, I.V. Majoul, P.J. Verveer, H.-D. Söling, and T.M. Jovin. Imaging the intracellular trafficking and state of the AB5 quaternary structure of cholera toxin. The EMBO Journal, 15(16):4246-4253, 1996. |
[145] | M. Bates, T. R. Blosser, and X. W. Zhuang. Short-range spectroscopic ruler based on a single-molecule optical switch. Physical Review Letters, 94(10):-, 2005. |
[146] | M. Bates, G.T. Dempsey, K.H. Chen, and X. Zhuang. Multicolor super-resolution fluorescence imaging via multi-parameter fluorophore detection. ChemPhysChem, 13:99-107, 2012. |
[147] | M. Bates, B. Huang, G. T. Dempsey, and X. Zhuang. Multicolor super-resolution imaging with photo-switchable fluorescent probes. Science, 317(5845):1749-53, 2007. |
[148] | M. Bates, S.A. Jones, and X. Zhuang. Imaging: A Laboratory Manual, chapter Stochastic Optical Reconstruction Microscopy (STORM): a method for super-resolution fluorescence imaging. Cold Spring Harbor Laboratory Press, 2011. ISBN 978-0-879699-36-9. |
[149] | P.E. Batson. Aberration correction results in the IBM STEM instrument. Ultramicroscopy, 96:239-249, 2003. |
[150] | P.E. Batson. Characterizing probe performance in the aberration corrected STEM. Ultramicroscopy, 106:1104-1114, 2006. |
[151] | P.E. Batson, N. Dellby, and O.L. Krivanek. Sub-ångstrom resolution using aberration corrected electron optics. Nature, 418:617-622, 2002. |
[152] | Christoph G. Baumann, Steven B. Smith, Victor A. Bloomfield, and Carlos Bustamante. Ionic effects on the elasticity of single DNA molecules. Proceedings of the National Academy of Sciences of the USA, 94:6185-6190, 1997. |
[153] | W. Baumeister. Mapping molecular landscapes inside cells. Biological Chemistry, 385:865-872, 2004. |
[154] | M.G. Bawendi and Karl F. Freed. A Wiener integral model for stiff polymer chains. Journal of Chemical Physics, 83(5):2491, 1985. |
[155] | W.T. Baxter, A. Leith, and J. Frank. Spire: The spider reconstruction engine. Journal of Strcutural Biology, 157:56-63, 2007. |
[156] | M.J. Bazin and J.W. Benoit. Off-line global approach to pattern recognition for bubble chamber pictures. IEEE Transactions on Nuclear Science, 12:291-295, August 1965. |
[157] | G. Beaucage, S. Rane, S. Sukumaran, M.M. Satkowski, L.A. Schechtman, and Y. Doi. Persistence length of isotactic poly(hydroxy butyrate). Macromolecules, 30:4158-4162, 1997. |
[158] | P.R. Beaudet. Rotationally invariant image operators. In International Joint Conference on Pattern Recognition, pages 579-583, 1978. |
[159] | John F. Beausang and Philip C. Nelson. Diffusive hidden Markov model characterization of DNA looping dynamics in tethered particle experiments. Physical Biology, 2007. |
[160] | John F. Beausang, Chiara Zurla, Laura Finzi, Luke Sullivan, and Philip C. Nelson. Elementary simulation of tethered Brownian motion. American Journal of Physics, 75(6):520-523, 2007. |
[161] | John F. Beausang, Chiara Zurla, Luke Sullivan, Laura Finzi, and Philip C. Nelson. Elementary simulation of tethered Brownian motion, October 1, 2006 2006. |
[162] | M. Beck, F. Förster, M. Ecke, J.M. Plitzko, F. Melchior, G. Gerisch, W. Baumeister, and O. Medalia. Nuclear pore complex structure and dynamics revealed by cryoelectron tomography. Science, 306:1387-1390, 2004. |
[163] | M. Beck, V. Lucic, F. Förster, W. Baumeister, and O. Medalia. Snapshots of nuclear pore complexes in action captured by cryo-electron tomography. Nature, 449:611-615, 2007. |
[164] | T. Becker, D.H. Rapoport, and A.M. Mamlouk. From timelapse-data to genealogic trees: Using different contrast mechanisms to improve cell tracking. In IEEE International Symposium on Biomedical Imaging, pages 386-389, Barcelona, Spain, May 2-5 2012. IEEE. |
[165] | A.L.D. Beckers and A.W.M. Smeulders. The probability of a random straight line in two and three dimensions. Pattern Recognition Letters, 11:233-240, 1990. |
[166] | R. Beckmann, D. Bubeck, R. Grassucci, P.A. Penczek, A. Verschoor, G. Blobel, and J. Frank. Alignment of conduits for the nascent polypeptide chain in the ribosome-sec61 complex. Science, 278(5346):213-2126, 1997. |
[167] | Jan Bednar, Patrick Furrer, Vsevolod Katritch, Alicja Z. Stasiak, Jacques Dubochet, and Andrzej Stasiak. Determination of DNA Persistence Length by Cryo-electron Microscopy. Separation of the Static and Dynamic Contributions to the Apparent Persistence Length of DNA. Journal of Molecular Biology, 254(4):579-594, 1995. |
[168] | M. op de Beek, D. van Dyck, and W. Coene. Wave function reconstruction in HRTEM: the parabola method. Ultramicroscopy, 64:167-183, 1996. |
[169] | W. Beil. Steerable filters and invariance theory. Pattern Recognition Letters, 15:453-460, 1994. |
[170] | M. Beleggia, M.A. Schofield, V.V. Volkov, and Y. Zhu. On the transport of intensity technique for phase retrieval. Ultramicroscopy, 102:37-49, 2004. |
[171] | N. Bellby, O.L. Krinvanek, P.D. Nellist, P.E. Batson, and A.R. Lupini. Progress in aberration-corrected scanning transmission electron microscopy. Journal of Electron Microscopy, 50(3):177-185, 2001. |
[172] | S. Belongie, J. Malik, and J. Puzicha. Shape matching and object recognition using shape contexts. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(4):509-522, April 2002. |
[173] | V. Beneš, Hlawiczkov? M., and K. Volen? Stereological estimation of integral mixed curvature with application. Journal of Microscopy, 200, Pt 1:26-31, October 2000. |
[174] | N. Bennett, R. Burridge, and N. Saito. A method to detect and characterize ellipses using the hough transform. IEEE Transactions on Pattern Analysis and Machine Intelligence, 21(7):652-657, July 1999. |
[175] | K. van Benthem, A.R. Lupini, M.P. Oxley, S.D. Findlay, L.J. Alleen, and S.J. Pennycook. Three-dimensional ADF imaging of individual atoms by through-focal series scanning transmission electron microscopy. Ultramicroscopy, 106:1062-1068, 2006. |
[176] | S.K. Berberian. Linear Algebra. Oxford, Oxford, 1992. |
[177] |
St éphane Berciaud, Laurent Cognet, Philippe Tamarat, and Brahim Lounis. Observation of Intrinsic Size Effects in the Optical Response of Individual Gold Nanoparticles. Nano Letters, 5(3):515-518, 2005. |
[178] | F. Bergholm. Edge focusing. IEEE Transactions on Pattern Analysis and Machine Intelligence, 9(6):726-741, November 1987. |
[179] | F. Bergholm, J. Adler, and I. Parmryd. Analysis of bias in the apparent correlation coefficient between image pairs corrupted by severe noise. Journal of Mathematical Imaging and Vision, 37(3):204-219, 2010. |
[180] | C.B.J. Bergsma, G.J. Streekstra, A.W.M. Smeulders, and E.M.M. Manders. Velocity estimation of spots in 3d confocal images sequences of living cells. Cytometry, 43(4):261-272, 2001. |
[181] | K. Berkner, C.J.G. Evertsz, and W. Berghorn. Visualisierung - Dynamik und Komplexität, chapter Eine lokale Charakterisierung von Kanten basierend auf Skalierungseigenschaften von Wavelet-Transformation. Tagungsband Bremen, 1995. |
[182] | R. Bernardini, G.M. Cortelazzo, and G.A. Mian. A new technique for twiddle-factor elimination in multidimensional FFT's. IEEE Transactions on Signal Processing, 42(8):2176-2178, August 1994. |
[183] | C. Berney and G. Danuser. FRET or no FRET: A quantitative comparison. Biophysical Journal, 84(6):3992-4010, 2003. |
[184] | A.J. Berro, A.J. Berglund, P.T. Carmichael, J.S. Kim, and J.A. Liddle. Super-resolution optical measurement of nanoscale photoacid distribution in lithographic materials. ACS Nano, 11(6):9496-9502, 2012. |
[185] | M. Bertalmio, G. Sapiro, V. Caselles, and C. Ballester. Image inpainting. In Proceedings of SIGGRAPH, New Orleans, USA, July 2000. |
[186] | J. Bertolotti, E.G. van Putten, C. Blum, A. Lagendijk, W.L. Vos, and A.P. Mosk. Non-invasive imaging through opaque scattering layers. Nature, 491:232-234, 2012. |
[187] | J.E. Besag. Spatial interaction and the statistical analysis of lattice systems. Journal of the Royal Statistical Society, Series B, 36:192-236, 1974. |
[188] | P.J. Besl and N.D. McKay. A method for registration of 3-D shapes. IEEE Transactions on Pattern Analysis and Machine Intelligence, 14(2):239-256, 1992. |
[189] | A. Bettini, M.R. Pozzan, E. Valdevit, and C. Frontali. Microscopic persistence length of DNA: Its relation to average molecular dimensions. Biopolymers, 19(9):1689-1694, 1980. |
[190] | E. Betzig. Proposed method for molecular optical imaging. Optics Letters, 20(3):237-239, 1995. |
[191] | E. Betzig, G.H. Patterson, R. Sougrat, O.W. Lindwasser, S. Olenych, J.S. Bonifacino, M.W. Davidson, J. Lippincott-Schwartz, and H.F. Hess. Imaging intracellular fluorescent proteins at nanometer resolution. Science, 313:1643-1645, 2006. |
[192] | S. Beucher. Watersheds of functions and picture segmentation. In IEEE International Conference on Acoustics, Speech, and Signal Processing, pages 1928-1931, 1982. |
[193] | P.A.A. de Beule, A.H.B. de Vried, D.J. Arndt-Jovin, and T.M. Jovin. Generation-3 programmable array microscope (PAM) with digital micro-mirror device (DMD). In SPIE Proceeding Conference 7932 Session 4, pages 7932-15, 2011. |
[194] | Michael A. Bevan and Dennis C. Prieve. Hindered diffusion of colloidal particles very near to a wall: Revisited. Journal of Chemical Physics, 113(3):1128-1236, 2000. |
[195] | J. Bewersdorf, R. Schmidt, and S.W. Hell. Comparison of I5M and 4Pi-microscopy. Journal of Microscopy, 222:105-117, 2006. |
[196] | M. Bezuijen. Improved sub-pixel shift estimation in 2d gray-value images. Master's thesis, Delft University of Technology, Delft, The Netherlands, September 2003. |
[197] | A. T Bharucha-Reid. Elements of the Theory of Markov Processes and Their Applications. New York: McGraw-Hill, 1960. |
[198] | Somendra M. Bhattacharjee and M. Muthukumar. Statistical mechanics of solutions of semiflexible chains: A path integral formulation. the Journal of Chemical Physics, 86(1):411-418, 1987. |
[199] | J. Biemond, R.L. Lagendijk, and R.M. Mersereau. Iterative methods for image deblurring. Proceedings of the IEEE, 78(5):856-883, May 1990. |
[200] | C.E. Bigelow, D.L. Conover, and T.H. Foster. Confocal fluorescence spectroscopy and anisotropy imaging system. Optics Letters, 28(9):695-697, May 2003. |
[201] | J. Bigün. Circular symmetry models in image processing. Lic. Thesis LIU-TEK-LIC-1986:25, Computer Vision Laboratory, Linköping University, Sweden. Thesis No. 85. |
[202] | J. Bigün. Speed, frequency, and orientation tuned 3-d gabor filterbanks and their design. In Proceedings of International Conference on Pattern Recognition, ICPR, Jerusalem, pages C-184-187. IEEE Computer Society. |
[203] | J. Bigün. Coordinate transformations, symmetries, and GHT. In Proceedings of the International Conference on Image Processing, volume 3, pages 197-201, 16-19 September 1996. |
[204] | J. Bigün. Pattern recognition in images by symmetries and coordinate transformations. Computer Vision and Image Understanding, 68(3):290-307, 1997. |
[205] | J. Bigün and G.H. Granlund. Optimal orientation detection of linear symmetry. In Proceedings of the first IEEE International Conference on Computer Vision, pages 433-438, London, June 8-11 1987. IEEE Computer Society Press. |
[206] | J. Bigün, G.H. Granlund, and J. Wiklund. Multidimensional orientation estimation with applications to texture analysis and optical flow. IEEE Transactions on Pattern Analysis and Machine Intelligence, 13(8):775-790, 1991. |
[207] | J. Bigün and J.M. Hans du Buf. N-folded symmetries by complex moments in Gabor space and their application to unsupervised texture segmentation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 16(1):80-87, January 1994. |
[208] | S.J.L. Billinge and I. Levin. The problem with determining atomic structure at the nanoscale. Science, 316:561-565, 2007. |
[209] | J. Birk, R. Kelley, N. Chen, and L. Wilson. Image feature extraction using diameter-limited gradient direction histograms. IEEE Transactions on Pattern Analysis and Machine Intelligence, 1(2):228-235, April 1979. |
[210] | C.M. Bishop. Neural Networks for Pattern Recognition. Oxford University Press, 1995. |
[211] | C.M. Bishop. Neural Networks for Pattern Recognition. Oxford University Press, New York, 1998. |
[212] | T.E. Bishop and P. Favaro. The light field camera: Extended depth of field, aliasing, and superresolution. IEEE Transactions on Pattern Analysis and Machine Intelligence, 34(5):972-986, 2012. |
[213] | I. Bitter and A.E. Kaufman. Penalized-distance volumetric skeleton algorithm. IEEE Transactions on Visualization and Computer Graphics, 7(3):195-205, July-September 2001. |
[214] | G.A. Blab, S. Oellerich, R. Schumm, and T. Schmidt. Simultaneous wide-field imaging and spectroscopy of localized fluorophores. Optics Letters, 29(7):727-729, 2004. |
[215] | S.C. Blair, P.A. Berge, and J.G. Berryman. Using two-point correlation functions to characterize microgeometry and estimate permeabilities of sandstones and porous glass. Journal of Geophysical Research, 101(B9):20359-20375, 1996. |
[216] | C. Blanc and C. Schlick. X-splines: A spline model designed for the end-user. In Proceedings of SIGGRAPH, pages 377-386, 1995. |
[217] | Alan H. Blanchard, Paul M. Greenaway. Simultaneous multiplane imaging with a distorted diffraction grating. Applied Optics, 38(32):6692-6699, 1999. |
[218] | A. Bleau, J. de Guise, and A.-R. LeBlanc. A new set of fast algorithms for mathematical morphology, i. idempotent geodesic transforms. CVGIP: Image Understanding, 56(2):178-209, September 1992. |
[219] | A. Bleau, J. de Guise, and A.-R. LeBlanc. A new set of fast algorithms for mathematical morphology, II. identification of topographic features on grayscale images. CVGIP: Image Understanding, 56(2):210-229, September 1992. |
[220] | A. Bleloch and A. Lupini. Imaging at the picometer scale. Materials Today, pages 42-48, 2004. |
[221] | D.A. Blom, L.F. Allard, S. Mishina, and M.A. O'Keefe. Early results from an aberration-corrected JEOL 2200FS STEM/TEM at Oak Ridge National Laboratory. Microscopy and Microanalysis, 12:483-491, 2006. |
[222] | D. Blostein and N. Ahuja. Shape from texture: Integrating texture-element extraction and surface estimation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 11(12):1233-1251, December 1989. |
[223] | L.I. Bluestein. A linear filtering approach to the computation of the discrete Fourier transform. In Northeast Electronics Res. and Eng. Meeting Record, volume 10, pages 218-129, 1968. |
[224] | L.I. Bluestein. A linear filtering approach to the computation of discrete Fourier transform. IEEE Transactions on Audio and Electroacoustics, 18(4):451-455, December 1970. |
[225] | Seth Blumberg, Arivalagan Gajraj, and Matthew W. Pennington. Three-Dimensional Characterization of Tethered Microspheres by Total Internal Reflection Fluorescence Microscopy. Biophysical Journal, 89:1272-1281, 2005. |
[226] | N. Bobroff. Position measurement with a resolution and noiselimited instrument. Review of Scientifric Instruments, 57(6):1152-1157, 1986. |
[227] | H. Bock, C. Geisler, C. A. Wurm, C. von Middendorff, S. Jakobs, A. Schönle, A. Egner, S. W. Hell, and C. Eggeling. Two-color far-field fluorescence nanoscopy based on photoswitchable emitters. Applied Physics B - Lasers and Optics, 88(2):161-165, 2007. |
[228] | F.R. Boddeke, L.J. van Vliet, H. Netten, and I.T. Young. Autofocusing in microscopy based on the OTF and sampling. Bioimaging, 2(4):193-203, 1994. |
[229] | F.R. Boddeke, L.J. van Vliet, and I.T. Young. Calibration of the automated z-axis of a microscope using focus functions. Journal of Microscopy, 186(3):270-274, 1997. |
[230] | J. Böhm, A.S. Frangakis, R. Hegerl, S. Nickell, D. Typke, and W. Baumeister. Toward detecting and identifying macromolecules in a cellular context: Template matching applied to electron tomograms. Biophysical Journal, 97:14245-14250, 2000. |
[231] | M. Böhmer and J. Enderlein. Orientation imaging of single molecules by wide-field epifluorescence microscopy. Journal of the Optical Society of America B, 20(3):554-559, 2003. |
[232] | N. Boisset, P.A. Penczek, J-C. Taveau, V. You, F. de Haas, and J. Lamy. Effects of angular oversampling in three-dimensional reconstruction. Scanning Microscopy, 11:131-145, 1997. |
[233] | S. Bolte and F.P. Cordelieres. A guided tour into subcellular colocalization analysis in light microscopy. Journal of Microscopy, 224(3):213-232, 2006. |
[234] | S. Bonneau, M. Dahan, and L.D. Cohnen. Single quantum dot tracking based on perceptual grouping using minimal paths in a spatiotemporal volume. IEEE Transactions on Image Processing, 14(9):1384-1395, 2005. |
[235] | Noël Bonnet. Artificial intelligence and pattern recognition techniques in microscope image processing and analysis. Advances in Imaging and Electron Physics, 114, 2000. |
[236] | R. van den Boomgaard. Mathematical Morphology: Extensions Towards Computer Vision. PhD thesis, University of Amsterdam, Amsterdam, 1992. |
[237] | R. van den Boomgaard. Mathematical Morphology: Extensions Towards Computer Vision. PhD thesis, University of Amsterdam, 1992. Chapter 3, Dimensional Decomposition of Structuring Functions. |
[238] | R. van den Boomgaard. Affine invariant deformation curves a tool for shape characterization. Image and Vision Computing, 17:375-380, 1999. |
[239] | R. van den Boomgaard and A. Smeulders. The morphological structure of images: The differential equations of morphological scale-space. IEEE Transactions on Pattern Analysis and Machine Intelligence, 16(11):1101-1113, 1994. |
[240] | R. van den Boomgaard and R. van der Weij. Gaussian convolutions (numerical approximations based on interpolation). In M. Kerckhove, editor, Proceedings Third International Conference on Scale-Space, volume 2106 of Lecture Notes on Computer Science, pages 205-214, Vancouver, Canada, 2001. Springer-Verlag. |
[241] | R. van den Boomgaard and J. van de Weijer. On the equivalence of local-mode finding, robust estimation and mean-shift analysis as used in early vision tasks. In R. Kasturi, D. Laurendeau, and C. Suen, editors, ICPR 2002, International Conference on Pattern Recognition. IEEE Computer Society, August 11-15 2002. |
[242] | R. van den Boomgaard and J. van de Weijer. Robust estimation of orientation for texture analysis. In Texture 2002, The 2nd international workshop on texture analysis and synthesis, pages 135-138, Copenhagen, Denmark, 1 June 2002. |
[243] | C.R. Booth, W. Jiang, M.L. Baker, Z.H. Zhou, S.J. Ludtke, and W. Chiu. A 9 single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope. Journal of Structural Biology, 147:116-127, 2004. |
[244] | M.J. Booth, M.A.A. Neil, R. Juskaitis, and T. Wilson. Adaptive aberration correction in a confocal microscope. Proceedings of the National Academy of Sciences of the United States of America, 99(9):5788-5792, 2002. |
[245] | M.J. Booth and T. Wilson. Strategies for the compensation of specimen-induced spherical aberration in confocal microscopy of skin. Journal of Microscopy, 200(1):68-74, 2000. |
[246] | C.B. Boothroyd, T. Kasama, and R.E. Dunin-Borkowski. Comparison of approaches and artefacts in the measurement of detector modulation transfer functions. Ultramicroscopy, 129:18-29, 2013. |
[247] | M. Borga. Learning Multidimensional Signal Processing. PhD thesis, Linköping University, Linköping, Sweden, 1998. |
[248] | M. Borga, H. Knutsson, and T. Landelius. Learning canonical correlations. In Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland), volume I, pages 1-8, June 9-11 1997. |
[249] | G. Borgefors. Distance transformations in arbitrary dimensions. Computer Vision, Graphics and Image Processing, 27:321-345, 1984. |
[250] | G. Borgefors. Distance transformations in digital images. Computer Vision, Graphics and Image Processing, 34:344-371, 1986. |
[251] | G. Borgefors. On digital distance transforms in three dimensions. Computer Vision and Image Understanding, 64(3):344-371, 1996. |
[252] | G. Borgefors. Weighted digital distance transforms in four dimensions. Discrete Applied Mathematics, 125(1):161-176, 2003. |
[253] | M.J. Borgnia, D. Shi, P. Zhang, and J.L.S. Milne. Visualization of α-helical features in a density map constructed using 9 molecular images of the 1.8MDa icosahedral core of pyruvate dehydrogenase. Journal of Structural Biology, 147:136-145, 2004. |
[254] | M. Born and E. Wolf. Principles of Optics. Pergamon Press, 6th edition, 1980, 1977. |
[255] | M. Born and E. Wolf. Principles of Optics. Cambridge University Press, 7th edition, 1999. |
[256] | A. van den Bos. Ultimate resolution: a mathematical framework. Ultramicroscopy, 47(1):298-306, 1992. |
[257] | A. van den Bos and J.H. Swarte. Resolvability of the parameters of multiexponentials and other sum models. IEEE Transactions of Signal Processing, 41:313-322, 1993. |
[258] | E.G.T. Bosch. The use of mutual information in image registration. Technical Note PR-TN-2004/00364, Philips Research, Eindhoven, The Netherlands, 2004. |
[259] | M. Bosman, L.J. Tang, J.D. Ye, Y. Zhang, and V.J. Keast. Nanoscale band gap spectroscopy on zno and gan-based compounds with a monochromated electron microscope. Applied Physics Letters, 95:101110, 2009. |
[260] | E.J. Botcherby, R. juskaitis, M.J. Booth, and T. Wilson. Aberration-free optical refocusing in high numerical aperture microscopy. Optics Letters, 32(14):2007, 2007-2009. |
[261] | B. Böttcher. Electron cryo-micrsocopy of graphite in amorphous ice. Ultramicroscopy, 58:417-424, 1995. |
[262] | B. Böttcher, S.A. Wynne, and R.A. Crowther. Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy. Nature, 386(6620):88-91, 1997. |
[263] | C. Bouchiat. Entropic elasticity of double-strand DNA subject to simple spatial constraints. Journal of Statistical Mechanics: Theory and Experiment, (03):P03019, 2006. |
[264] | C. Bouchiat. Spatial Constraint Corrections to the Elasticity of dsDNA Measured with Magnetic Tweezers, 2007. |
[265] | C. Bouchiat, M. D. Wang, J.-F. Allemand, T. Strick, S. M. Block, and V. Croquette. Estimating the Persistence Length of a Worm-Like Chain Molecule from Force-Extension Measurements. Biophysical Journal, 76:409-413, 1999. |
[266] | J. Boulanger, C. Kervrann, P. Bouthemy, P. Elbau, J.-B. Sibarita, and J. Salamero. Patch-based nonlocal functional for denoising fluorescence microscopy image sequences. IEEE Transactions on Medical Image Processing, 29(2):442-454, 2010. |
[267] | H. Bouma, A. Vilanova, L.J. van Vliet, and F.A. Gerritsen. Correction for the dislocation of curved surfaces caused by the PSF in 2D and 3D CT images. Ultramicroscopy, 27(9):1501-1507, 2005. |
[268] | M. Boutin. Numerically invariant signature curves. International Journal of Computer Vision, 40(3):235-248, 2000. |
[269] | J.C. Bouwer, A. Mackey, M.R.and Lawrence, T.J. Deerinck, Y.Z. Jones, M. Terada, M.E. Martone, S. Peltier, and M.H. Ellisman. Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement. Journal of Structural Biology, 148:297-306, 2004. |
[270] | C. I. Bouzigues, P. Tabeling, and L. Bocquet. Nanofluidics in the Debye Layer at Hydrophilic and Hydrophobic Surfaces. Physical Review Letters, 101(11):114503, 2008. |
[271] | J.E. Bowie and I.T. Young. An analysis technique for biological shape - II. Acta Cytologica, 21(5):455-464, 1977. |
[272] | J.E. Bowie and I.T. Young. An analysis technique for biological shape - III. Acta Cytologica, 21(6):739-746, 1977. |
[273] | W.E. Boyce and R.C. DiPrima. Elementary differential equations and boundary value problems. John Wiley & sons, fourth edition, 1986. |
[274] | J.J.M. Braat, P. Dirksen, A.J.E.M. Janssen, S. van Haver, and S. van de Nes. Extended Nijboer-Zernike approach to aberration and birefringence retrieval in a high-numerical-aperture optical system. Journal of the Optical Society of America A, 22(12):2635-26550, 2005. |
[275] | R.N. Bracewell. Discrete Hartley transform. J. Opt. Soc. Am., 73(12):1832-1835, December 1983. |
[276] | R.N. Bracewell. The fast Hartley transform. In Proc. IEEE, pages 1010-1018, August 1984. |
[277] | R.N. Bracewell. The Fourier Transform and its Applications. McGraw-Hill, third edition, 2000,1965. |
[278] | J. Bradley, Z. Dai Rong, R. Erni, N. Browning, G. Graham, P. Weber, J. Smith, I. Hutcheon, H. Ishii, S. Bajt, C. Floss, F. Stadermann, and S. Sandford. An astronomical 2175 åfeature in interplanetary dust particles. Science, 307:244-, 2005. |
[279] | J.P. Bradley, Z.R. Dia, M. Wall, R. Erni, and N. Browning. An analytical superstem for extraterrestrial materials research. Lunar and Panetary Science, 35, 2004. |
[280] | Ido Braslavsky, Roee Amit, B.M. Jaffar Ali, Opher Gileadi, Amos Oppenheim, and Joel Stavans. Objective-type dark-field illumination for scattering from microbeads. Applied Optics, 40(31):5650-5667, 2001. |
[281] | Ido Braslavsky, Benedict Hebert, Emil Kartalov, and Stephern R. Quake. Sequence Information can be Obtained from Single DNA Molecules. Proceedings of the National Academy of Sciences of the USA, 100(7):3960-3964, 2003. |
[282] | S. Braun, J.P. Ronzheimer, M. Schreiber, S.S. Hodgaman, T. Rom, I. Bloch, and U. Schneider. Negative absolute temperature for motional degrees of freedom. Science, 339(52):52-54, 2013. |
[283] | N. Brede and M. Lakadamyali. GraspJ: an open source, real-time analysis package for super-resolution imaging. Optical Nanoscopy, 1:11, 2012. |
[284] | E. J. Breen and R. Jones. An attribute-based approach to mathematical morphology. In P. Maragos, R. W. Schafer, and M. Akmal Butt, editors, Mathematical Morphology and its Applications to Image and Signal Processing, pages 41-48, Boston, 1996. Kluwer Academic Publishers. |
[285] | E. J. Breen and R. Jones. Attribute openings, thinnings, and granulometries. Computer Vision and Image Understanding, 64(3):377-389, 1996. |
[286] | E.J. Breen, R. Jones, and H. Talbot. Mathematical morphology: A useful set of tools for image analysis. Statistics and Computing, 10:105-120, 2000. |
[287] | Howard Brenner. The slow motion of a sphere through a viscous fluid towards a plane surface. Chemical Engineering Science, 16(3-4):242-251, 1961. |
[288] | P. Breton and S.W. Zucker. Shadows and shading flow fields. In CVPR'96, pages 782-789, 1996. |
[289] | P. Breton and S.W. Zucker. Shadows and shading flow fields. In Proc. IEEE Conference on Computer Vision and Pattern Recognition - CVPR'96, pages 782-789, San Francisco, USA, 1996. |
[290] | S. Bretschneider, C. Eggeling, and S.W. Hell. Breaking the diffraction barrier in fluorescence microscopy by optical shelving. Physical Review Letters, page 218103, 2007. |
[291] | C. Bricot, J.C. Lehureau, and C. Puech. Optical readout of videodisc. IEEE Transactions on Consumer Electronics, 22(4):304-308, 1976. |
[292] | A. Briegel, S. Chen, A.J. Koster, J.M. Plitzko, and G.J. Schwartz, C.L. Jensen. Correlated light and electron cryo-micrscopy. Methods in Enzymology, 481:317-342, 2010. |
[293] | A. Briegel, X. Li, A.M. Bilwes, K.T. Hughes, G.J. Jensen, and B.R. Crane. Bacterial chemoreceptor arrays are hexagonally packed trimers of receptor dimers networked by rings of kinase and coupling proteins. Proceedings of the National Academy of Sciences USA, 2012. doi/10.1073/pnas.1115719109. |
[294] | A. Briegel, M. Pilhofer, D.N. Mastronade, and G.J. Jensen. The challenge of determining handedness in electron tomography and the use of dna origami gold nanoparticle helices as molecular standards. Journal of Structural Biology, 2013. |
[295] | A.F. Brilot, J.Z. Chen, A. Cheng, J. Pan, C.S. Harrison, S.C .and Potter, B. Carragher, R. Henderson, and N. Grigorieff. Beam-induced motion of vitrified specimen on holey carbon film. Journal of Structural Biology, 177:630-637, 2012. |
[296] | J. Brink, H. Gross, P. Tittmann, M.B. Sherman, and W. Chiu. Reduction of charging in protein electron cryomicroscopy. Journal of Microscopy, 191(1):67-73, 1998. |
[297] | J. Brink, M.B. Sherman, J. Berrniman, and W. Chiu. Evaluation of charing on macromolecules in electron mircoscopy. Ultamicroscopy, 72:41-52, 1998. |
[298] | N. van den Brink. Three dimensional image analysis of microstructures in microscopical images. Master's thesis, Delft University of Technology, Delft, The Netherlands, 1999. |
[299] | S. Brinkers. All that glitters is gold:. PhD thesis, Delft University of Technology, Delft, The Netherlands, October 2011. |
[300] | S. Brinkers, H.R.C. Dietrich, F.H. de Groote, I.T. Young, and B. Rieger. The persistence length of double stranded DNA determined using dark field tethered particle motion. Journal of Chemical Physics, 130(21):215105, 2009. |
[301] | Sanneke Brinkers, Heidelinde R. C. Dietrich, Sjoerd Stallinga, Jurriaan J. Mes, Ian T. Young, and Bernd Rieger. Single molecule detection of tuberculosis nucleic acid using dark field tethered particle motion. In IEEE International Symposium on Biomedical Imaging, page 1269, Rotterdam, The Netherlands, April 14-17 2010. |
[302] | R. Brock and T.M. Jovin. Quantitative image analysis of cellular protein translocation induced by magnetic microspheres: Application to the egf receptor. Cytometry Part A, 52A:1-11, 2003. |
[303] | R. W. Brockett and P. Maragos. Evolution equations for continuous-scale morphology. In IEEE International Conference on Acoustics, Speech and Signal Processing, volume 3, pages 125-128, 1992. |
[304] | R. W. Brockett and P. Maragos. Evolution equations for continuous-scale morphological filtering. IEEE Transactions on Signal Processing, 42(12):3377-3386, 1994. |
[305] | Bram van den Broek, Francesco Vanzi, Davide Normanno, Francesco S. Pavone, and Gijs J. L. Wuite. Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI. Nucleic Acids Research, 34(1):167-174, 2006. |
[306] | W. van den Broek, A. van Aert, and D. van Dyck. Fully automated measurement of the modulation transfer function of charge-coupled devices above the nyquist frequency. Microscopy and Microanalysis, 2012. |
[307] | W. van den Broek and C.T. Koch. General framework for quantitative three-dimensional reconstruction from arbitrary detection geometries in TEM. Physical Review B, 87:184108, 2013. |
[308] | S.G. Brohawn, N.C. Leksa, E.D. Spear, K.R. Rajashankar, and T.U. Schwartz. Structural evidence for common ancestry of the nuclear pore complex and vesicle coats. Science, 322:1369-1373, 2008. |
[309] | S.G. Brohawn and T.U. Schwartz. Molecular architecture of the Nup84-Nup145C-Sec13 edge element in the nuclear pore complex lattice. Nature structural & molecular biology, 16(11):1173-1178, 2009. |
[310] | P. Bron, J.-J. Lacapére, C. Breyton, and G. Mosser. The 9 å projection structure of cytochrome b6f complex determined by electron crystallography. Journal of Molecular Biology, 287:117-126, 1999. |
[311] | A.V. Bronnikov. Theory of quatitative phase-contrast computed tomography. Journal of the Optical Society of America A, 19:472-480, 2002. |
[312] | M.S. Bronsgeest, J.E. Barth, G.A. Schwind, L.W. Swanson, and P. Kruit. Extracting the boersch effect contribution from experimental energy spread measurements for schottky electron emitters. Journal of Vaccuum Science Technology B, 25(6):2049-254, 2007. |
[313] | I. Bronstein, Y. Israel, E. Kepten, S. Mai, Y. Shav-Tal, E. Barkai, and Y. Garini. Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells. Physical Review Letters, 103(1):018102, 2009. |
[314] | I. N. Bronstein, K. A. Semendjajew, G. Musiol, and H. Mühlig. Taschenbuch der Mathematik. Verlag Harri Deutsch, Thun, Frankfurt (Main), 4th edition, 1999. |
[315] | I.N. Bronstein and K.A. Semendjajew. Taschenbuch der Mathematik. Teubner, Thun, Frankfurt (Main), 25th edition, 1991. |
[316] | I.N. Bronstein, K.A. Semendjajew, G. Musiol, and H. Mühlig. Taschenbuch der Mathematik. Verlag Harri Deutsch, 2000. |
[317] | M.Z. Brown, D. Burschka, and G.D. Hager. Advances in computational stereo. IEEE Transactions on Pattern Analysis and Machine Intelligence, 25(8):993-1007, August 2003. |
[318] | R. Brown. Additional remarks on active molecules. The Philosophical Magazine and Annals of Philosophy, 6(34):161-166, 1829. |
[319] | N.D. Browning and S.J. Pennycook. Direct experimental determination of the atomic structure at internal interfaces. Journal of Physics D, 29:1779, 1996. |
[320] | N.D. Browning, D.J. Wallis, P.D. Nllist, and S.J. Pennycook. EELS in the STEM: Determination of materials properties on the atomic scale. Micron, 28:333, 1997. |
[321] | T. Brox, J. Weickert, B. Burgeth, and P. Mrazek. Nonlinear structure tensor. Image and Vision Computing, 24:41-55, 2006. |
[322] | M. de Bruijne, W.J. Niessen, J.B.A. Maintz, and M.A. Viergever. Localization and segmentation of aortic endografts using marker detection. IEEE Transactions on Medical Imaging, 22:473-482, 2003. |
[323] | P.W. de Bruin, V.J. Dercksen, F.H. Post, A.M. Vosselpoel, G.J. Streekstra, and F.M. Vos. Interactive 3D segmentation using connected orthogonal contours. Computers in Biology and Medicine, 34:1-18, 2004. |
[324] | H. Brusse. Quantitative structuuranalyse van aardlagen op basis van boorgatbeelden. Master's thesis, Delft University of Technology, August 1995. in Dutch. |
[325] | G. Bruun. z-transform DFT filters and FFT's. IEEE Transactions on Acoustics, Speech, and Signal Processing, 26(1):56-63, February 1978. |
[326] | C. Bryne, D. Gordon, and D. Heilper. Models for biomedical image reconstruction based on integral approximation methods. In IEEE International Symposium on Biomedical Imaging, pages 70-73, Barcelona, Spain, May 2-5 2012. IEEE. |
[327] | J.P. Buban, Q. Ramasse, B. Gipson, N.D. Browning, and H. Stahlberg. High-resolution low-dose scanning transmission electron microscopy. Journal of Electron Microscopy, pages 1-10, 2009. |
[328] | R. Buczko, G. Duscher, S>J. Pennycook, and S.T. Pantelides. Excitonic effects in core-excitation spectra of semiconductors. Physical Review Letters, 85:2168, 2000. |
[329] | E. Buhr, S. Günther-Kohfahl, and U. Neitzel. Simple method for modulation transfer function determination of digital imaging detectors from edge images. In Proceedings of SPIE, volume 5030,3, San Diego, California, USA, 16-18 February 2003. |
[330] | P.A. Bullough and R. Henderson. The projection structure of the low temperature k intermediate of the bacteriorhodopsin photocycle d etermined by electron diffraction. Journal of Molecular Biology, 286:1663-1671, 1999. |
[331] | T. Bülow and G. Sommer. Quaternionic Gabor filters for local structure classification. In 14th International Conference on Pattern Recognition (Brisbane, Australia), pages 808-810, August 17-20. |
[332] | T. Bülow and G. Sommer. Algebraically extended representations of multi-dimensional signals. In Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland), volume I, pages 559-566, June 9-11 1997. |
[333] | T. Bülow and G. Sommer. Hypercomplex signals - a novel extension of the analytic signal to the multidimensional case. IEEE Transactions on Signal Processing, 49(11):2844-2852, 2001. |
[334] | G. Bunt and F.S. Wouters. Visualization of molecular activities inside living cells with fluorescent labels. International Review of Cytology, 237:205-280, 2004. |
[335] | Theodore W. Burkhardt. Semiflexible polymer in the half plane and statistics of the integral of a Brownian curve. Journal of Physics A: Mathematical and General, 26:L1157-L1162, 1993. |
[336] | D.T. Burnette, P. Sengupta, Y. Dai, J. Lippincott-Schwartz, and B. Kachar. Bleaching/blinking assisted localization microscopy for superresolution imaging using standard fluorescent molecules. Proceedings of the National Academy of Sciences USA, 108(52):21081-6, 2011. |
[337] | C. Bustamante, J.F. Marko, E.D. Siggia, and S. Smith. Entropic Elasticity of lambda-Phage DNA. Science, 265(5178):1599-1601, 1994. |
[338] | Carlos Bustamante, Zev Bryant, and Steven B. Smith. Ten years of tension: single-molecule DNA mechanics. Nature, 421:423-427, 2003. |
[339] | Carlos Bustamante, Steven B. Smith, Jan Liphardt, and Doug Smith. Single-molecule studies of DNA mechanics. Current Opinion in Structural Biology, 10(3):279-285, 2000. |
[340] | Jason E. Butler and Eric S.G. Shaqfeh. Brownian dynamics simulations of a flexible polymer chain which includes continuous resistance and multibody hydrodynamic interactions. The Journal of Chemical Physics, 122, 2005. |
[341] | W. Caarls, M.S. Celej, A.P. Demchenko, and T.M. Jovin. Characterization of coupled ground state and excited state equilibria by fluorescence spectral deconvolution. Journal of Fluorescence, 20:181-190, 2010. |
[342] | W. Caarls, B Rieger, A.H.B. de Vries, D.J. Arndt-Jovin, and T.M. Jovin. Minimizing light exposure with the programmable array microscope. Journal of Microscopy, 241(1):101-110, 2011. |
[343] | Nathaniel C. Cady, Aaron D. Strickland, and Carl A. Batt. Optimized linkage and quenching strategies for quantum dot molecular beacons. Molecular and Cellular Probes, 21:116-124, 2007. |
[344] | J.M. Cairney, P.R. Munroe, and D.J. Sordelet. Microstructural analysis of a feal/quasicrystal-based composite prepared using a focused ion beam miller. Journal of Microscopy, 201, Pt 2:201-211, February 2001. |
[345] | E. Calabi, P.J. Olver, C. Shakiban, A. Tannenbaum, and S. Haker. Differential and numerically invariant signature curves applied to object recognition. International Journal of Computer Vision, 26(2):107-135, 1998. |
[346] | A. Calway. Incorporating orientation selectivity in wavelet transforms for multiresolution Fourier analysis of images. Technical report, Linköping University, September 1991. LiTH-ISY-I-1243. |
[347] | E. le Cam, F. Fack, J. Menissier-de Murcia, J.A.H. Cognet, A. Barbin, V. Sarantoglou, B. Revet, E. Delain, and G. de Murcia. Conformational analysis of a 139 base-pair DNA fragment containing a single-stranded break and its interaction with Human Poly(ADP-ribose) polymerase. Journal of Molecular Biology, 235(3):1062-1071, 1994. |
[348] | D.J. Campbell, editor. Exploring the Nanoworld with LEGO bricks. 2001. |
[349] | D.J. Campbell, E.R. Freidinger, and M.K. Querns. Spontaneous assembly of magnetic LEGO bricks. The Chemical Educator, 6(6):321-323, 2001. |
[350] | J. Canny. A computational approach to edge detection. IEEE Transactions on Pattern Analysis and Machine Intelligence, 8(6):679-697, November 1986. |
[351] | Frédéric Cao. Morphological scale space and mathematical morphology. In Mads Nielsen, Peter Johansen, Ole F. Olsen, and Joachim Weickert, editors, Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece), volume 1682 of Lecture Notes on Computer Science, pages 164-174, Berlin Heidelberg, September 1999. Springer-Verlag. |
[352] | M. Capitanio, F. Vanzi, C. Broggio, R. Cicchi, D. Normanno, G. Romano, L. Sacconi, and F.S. Pavone. Exploring Molecular Motors and Switches at the Single-Molecule Level. Microscopy Research and Technique, 65:194-204, 2004. |
[353] | J.-F. Cardoso. Blind signal separation: statistical principles. Proceedings of the IEEE, 86(10):2009-2025, 1998. |
[354] | G. Cariolaro, T. Erseghe, P. Kraniauskas, and N. Laurenti. A unified framework for the fractional Fourier transform. IEEE Transactions on Signal Processing, 46(12):3206-3219, December 1998. |
[355] | S. de Carlo, C. El-Bez, C. Alvarez-Rua, J. Borge, and J. Dubochet. Cryo-negative staining reduces electron-beam sensitivity of vitrified biological particles. Journal of Structural Biology, 138:216-222, 2002. |
[356] | P.M. Carlton, J. Boulanger, C. Kervrann, J.-B. Sibarita, J. Salamero, S. Gordon-Messer, D. Bressan, J.E. Haber, S. Haase, L. Shao, L. Winoto, A. Matsuda, P. Kner, S. Uzawa, M.G.F. Gustafsson, Z. Kam, D.A. Agard, and J.W. Sedat. Fast live simultaneous multiwavelength four-dimensional optical microscopy. Proceedings of the National Academy of Sciences, 2010. |
[357] | B. Carragher, N. Kisseberth, D. Kriegman, R.A. Milligan, C.S. Potter, J. Pulokas, and A. Reilein. Leginon: an automated system for acquisition of images from vitrecus ice specimens. Journal of Structural Biology, 132:33-45, 2000. |
[358] |
Alain Carr é, Val érie Lacarri ère, and William Birch. Molecular interactions between DNA and an aminated glass substrate. Journal of Colloid and Interface Science, 260:49-55, 2003. |
[359] | E. Casadio Tarabusi, J.M. Cohen, and F. Colonna. Characterization of the range of the Radon transform on homogeneous trees. Electronic Research Announcements of the American Mathematical Society, 5:11-17, February 1999. |
[360] | V. Castaldo, B. Hagen, C.W. Rieger, and P. Kruit. Sputtering limits versus signal-to-noise limits in the observation of Sn balls in a Ga+ microscope. Journal of Vacuum Science and Technology B, 26(6):2107-2115, 2008. |
[361] | F. Catté, P. Lions, J. Morel, and T. Coll. Image selective smoothing and edge detection by nonlinear diffusion. SIAM J. Numer. Anal., 29(1):182-193, February 1992. |
[362] | A. Cavallo. Four Dimensional Particle Tracking in Biological Dynamic Processes. PhD thesis, Ruprechts-Karls-Universität, Heidelberg, Germany, June 2002. |
[363] | M.S. Celej, W. Caarls, A.P. Demchenko, and T.M. Jovin. A triple-emission fluorescent probe reveals distinctive amyloid fibrillar polymorphism of wild-type r-synuclein and its familial parkinson's disease mutants. Biochemistry, 48:7465-7472, 2009. |
[364] | J. Chadoeuf, A. Brix, A. Pierret, and D. Allard. Testing local dependence of spatial structures on images. Journal of Microscopy, 200, Pt 1:32-41, October 2000. |
[365] | T.T. Chan and L.A. Vese. Active contours without edges. IEEE TRANSACTIONS ON IMAGE PROCESSING, 10(2):266-277, 2001. |
[366] | S. Chandrasekhar. Stochastic Problems in Physics and Astronomy. Revieuws of Modern Physics, 15(1):2-87, 1943. |
[367] | L.Y. Chang, A.I. Kirkland, and J.M. Tichmarsh. On the importance of fifth-order spherical aberration for a fully corrected electron microscope. Ultramicroscopy, page in press, 2006. |
[368] | S.-H. Chang, F.-H. Cheng, and G.-Z. Hsu, W.-H.and Wu. Fast algorithm for point pattern matching: Invariant to translations, rotations and scale changes. Pattern Recognition, 30(2):311-320, 1997. |
[369] | W-H. Chang, M.T.K. Chiu, C.-Y. CHen, C.F. Yen, Y.-C. Lin, Y.-P. Weng, J.-C. Chang, Y.-M. Wu, H. Cheng, J. Fu, and I-P. Tu. Zernike phase plate cryoelectron microscopy facilitates single particle analysis of unstained asymmetric protein complexes. Structure, 18:17-27, 2010. |
[370] | J. Chao, S. Ram, E.S. Ward, and R.J. Ober. A comparative study of high resolution microscopy imaging modalities using a three-dimensional resolution measure. Optics Express, 17(26):24377-24401, 2009. |
[371] | J. Chao, S. Ram, E.S. Ward, and R.J. Ober. Ultrahigh accuracy imaging modality for super-localization microscopy. Nature Methods, 2013. |
[372] | J. Chao, E.S. Ward, and R.J. Ober. Fisher information matrix for branching processes with application to electron-multiplying charge-coupled devices. Multidimensional System and Signal Processing, 23:349-379, 2012. |
[373] | Michael K. Cheezum, William F. Walker, and William H. Guilford. Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles. Biophysical Journal, 81(4):2378-2388, 2001. |
[374] | J. Chen, Y. Sato, and S. Tamura. Orientation space filtering for multiple orientation line segmentation. Pattern Analysis and Machine Intelligence, 22(5):417-429, May 2000. |
[375] | J.Z. Chen, C. Sachse, C. Xu, T. Mielke, C.M.T. Spahn, and N. Grigorieff. A dose-rate effect in single-particle electron microscopy. Journal of Structural Biology, 161:92-100, 2007. |
[376] | M.-H. Chen and P.-F. Yan. A multiscaling approach based on morphological filtering. IEEE Transactions on Pattern Analysis and Machine Intelligence, 11(7):694-700, 1989. |
[377] | Q. Chen, M. Defrise, and F. Deconinck. Symmetric phase only matched filtering of Fourier-Mellin transforms for image registration and recognition. IEEE Transactions on Pattern Analysis and Machine Intelligence, 16(12):1156-1168, 1994. |
[378] | S. Chen and R.M. Haralick. Recursive erosion, dilation, opening, and closing transforms. IEEE Transactions on Image Processing, 4(3):335-346, 1995. |
[379] | W.-H. Chen, C. Harrison Smith, and S.C. Fralick. A fast computational algorithm for the discrete cosine transform. IEEE Transactions on Communications, 25(9):1004-1009, September 1977. |
[380] | Y.S. Chen. Segmentation and association among lines and junctions for a line image. Pattern Recognition, 27(9):1135-1157, 1994. |
[381] | Y.S. Chen, S.L. Chang, and W.H. Hsu. An improved line continuation model in human visual perception. Pattern Recognition, 26(6):825-842, 1993. |
[382] | Y.S. Chen and W.H. Hsu. An interpretive model of line continuation in human visual perception. Pattern Recognition, 22(5):619-639, 1989. |
[383] | F. Cheng and A. N. Venetsanopoulos. An adaptive morphological filter for image processing. IEEE Transactions on Image Processing, 1(4):533-539, 1992. |
[384] | D.I. Chepic, A.L. Efros, A.I. Ekimov, M.G. Ivanov, V.A. Kharchenko, I.A. Kudriavtsev, and T.V. Yazeva. Auger ionization of semiconductor quantum drops in a glass matrix. Journal of Luminescence, 47(3):113-127, 1990. |
[385] |
Boutheina Cherif, Andr é Roget, Christian L. Villiers, Roberto Calemczuk, Vincent Leroy, Patrice N. Marche, Thierry Livache, and Marie-Bernadette Villiers. Clinically Related Protein-Peptide Interactions Monitored in Real Time on Novel Peptide Chips by Surface Plasmon Resonance Imaging. Clinical Chemistry, 52(2):255-262, 2006. |
[386] | J.-L. Chermant, L. Chermant, M. Coster, A.-S. Dequiedt, and C. Redon. Some fields of applications of automatic image analysis in civil engineering. Cement & Concrete Composites, 23:157-169, 2001. |
[387] | D.I. Cherny, M. Brzdov4, J. Paleček, E. Paleček, and T.M. Jovin. Sequestering of p53 into DNA-protein filaments revealed by electron microscopy. Biophysical Chemistry, 114(3):261-271, 2005. |
[388] | D.I. Cherny, C. Gooding, G.E. Eperon, M.B. Coelho, C.R. Bagshaw, C.W.J. Smith, and I.C. Eperon. Stoichiometry of a regulatory splicing complex revealed by single-molecule analyses. The EMBO Journal, 2010. |
[389] | D.I. Cherny, W. Hoyer, V. Subramaniam, and T.M. Jovin. Double-stranded DNA stimulates the fibrillation of α-synuclein in vitro and is associated with the mature fibrils: An electron microscopy study. Journal of Molecular Biology, 344(4):929-938, 2004. |
[390] | D.I. Cherny and T.M. Jovin. Electron and scanning force microscopy studies of alterations in supercoiled DNA tertiary structure. Journal of Molecular Biology, 313(2):295-307, 2001. |
[391] | D.I. Cherny, G. Striker, V. Subramaniam, S.D. Jett, E. Paleček, and T.M. Jovin. DNA bending due to specific p53 and p53 core domain-DNA interactions visualized by electron microscopy. Journal of Molecular Biology, 294(4):1015-1026, 1999. |
[392] | A. Chessel, J. Dodgson, and R.E. Carazo-Salas. Spherical spatial statistics for 3d fluorescence video-microscopy. In Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, pages 1747 -1750, May 2012. |
[393] | M.C. Cheynet, F.R. Tichelaar, S. Lazar, S. Jullian, and R. Pantel. VEELS experiments using a monochromated FEG-TEM. pages 1-2. |
[394] | W. Chiu and R.M. Glaeser. Factors affecting high resolution fixed-beam transmission electron microscopy. Ultramicroscopy, 2:207-217, 1977. |
[395] | A. Chiuso, P. Favaro, Hailin Jin, and S. Soatto. Structure from motion causally integrated over time. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(4):523-535, 2002. |
[396] | A.I. Chizihik, A.M. Chizhik, D. Khoptyar, S. Bär, A.J. Meixner, and J. Enderlein. Probing the radiative transition of single m olecules with a tunable microresonator. Nano Letters, 11:1700-1703, 2011. |
[397] | A. Chmyrov, J. Keller, T. Grotjohann, M. Ratz, E. d'Este, S. Jakobs, C. Eggeling, and S.W. Hell. Nanoscopy with more than 100,000 'doughnuts'. Nature Methods, 10(8):737-740, 2013. |
[398] | K.K. Christenson and J.A. Eades. Skew thoughts on parallelism. Ultramicroscopy, 26:113-132, 1988. |
[399] | M.-W. Chu, C.-H. Chen, F.J.G. Garcia de Abajo, J.-P. Deng, and C.-Y. Mou. Surface exciton polaritons in individual au nanoparticles in the far-ultraviolet spectral regime. Physical Review B, 77:245402, 2008. |
[400] | M.-W. Chu, V. Myroshnchenko, C.H. Chen, J.-P. Deng, C.-Y. Mou, and F.J.G. Garcia de Abajo. Crystal structure of the 30S ribosomal subunit from thermus thermophilus: Purification, crystallization and structure determination. Journal of Molecualar Biology, 2009. |
[401] | M.-W. et al. Chu. Probing surface plasmons in individual ag nanoparticles in the ultra-violet spectral regime. Nanotechnology, 20:235705, 2009. |
[402] | D.H. Chung and G. Sapiro. On the level lines and geometry of vector-valued images. IEEE Signal Processing Letters, 7(9):241-243, September 2000. |
[403] | K.L. Chung. Elementary Probability Theory with Stochastic Processes. Springer Verlag, second edition, 1974. |
[404] | K.L. Chung. A Course in Probability Theory. Academic Press, third edition, 2001 (1968). |
[405] | L.S. Churchman, Z. Öktem, R.S. Rock, J.F. Dawson, and J.A. Spudich. Single molecule high-resolution colocalization of Cy3 and Cy5 attached to macromolecules measures intramolecular distances through time. Proceedings of the National Academy of Science, 102(5):1419-1423, 2005. |
[406] | L.S. Churchmann and J.A. Spudich. Colocalization of fluorescent probes: accurate and precise registration with nanometer resolution. Cold Spring Harbor Protocolls, pages 141-150, 2012. doi:10.1101/pdb.top067918. |
[407] | G.C. Cianci, J. Wu, and K.M. Berland. Saturation modified point spread functions in two-photon microscopy. Microscopy Research and Technique, 64(2):135-141, 2004. |
[408] | A.R. Clapp, I.L. Medintz, J.M. Mauro, B.R. Fisher, M.G. Bawendi, and H. Mattoussi. Fluorescence resonance energy transfer between quantum dot donors and dye-labeled protein acceptors. Journal of the American Chemical Society, 126:301-310, 2004. |
[409] | A.H.A. Clayton, Q.S. Hanley, D.J. Arndt-Jovin, V. Subramaniam, and T.M. Jovin. Dynamic fluorescence anisotropy imaging microscopy in the frequency domain (rFLIM). Biophysical Journal, 83(3):1631-1649, 2002. |
[410] | A.H.A. Clayton, Q.S. Hanley, and P.J. Verveer. Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data. Journal of Microscopy, 213:1-5, 2004. |
[411] | W.M. Jr. Clemons, D.E. Brodersen, J.P. McCutcheon, J.L.C. May, A.P. Carter, R.J. Morgan-Warren, B.T. Wimberly, and V. Ramakrishnan. Crystal structure of the 30S ribosomal subunit from thermus thermophilus: Purification, crystallization and structure determination. Journal of Molecualar Biology, 310:827-843, 2001. |
[412] | M. Clerc and S. Mallat. The texture gradient equation for recovering shape from texture. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(4):536-549, April 2002. |
[413] | H.J.H. Clercx and P.P.J.M. Schram. Brownian particles in shear flow and harmonic potentials: A study of long-time tails. Physical Review A, 46(4):1942-1950, 1992. |
[414] | W.S. Cleveland. Robust locally weighted regression and smoothing scatterplots. Journal of the American Statistical Association, 74(368):829-836, Dec. 1979. |
[415] | J.N. Clifford, T.D.M. Bell, P. Tinnefeld, M. Heilemann, S.M. Melnikov, J.-I. Hotta, M. Sliwa, P. Dedecker, M. Sauer, J. Hofkens, and E.K.L. Yeow. Fluorescence of single molecules in polymer films: Sensitivity of blinking to local environment. The Journal of Physical Chemistry B Letters, 111(6987-69991), 2007. |
[416] | S. Cocco, J.F. Marko, and R. Monasson. Theoretical models for single-molecule DNA and RNA experiments: from elasticity to unzipping. Comptes rendus de l'Academie des Sciences Physique, 3:569-584, 2002. |
[417] | S. Cocco, J.F. Marko, R. Monasson, A. Sarkar, and J. Yan. Force-extension behavior of folding polymers. The European Physical Journal E, 10:249-263, 2003. |
[418] | W.M.J. Coene and T.J.J. Denteneer. Improved methods for the determination of the spherical aberration coefficient in high-resolution electron microscopy from micrographs of an amorphous object. Ultramicroscopy, 38:225-233, 1991. |
[419] | W.M.J. Coene, G. Jansen, M. op de Beeck, and D. van Dyck. Phase retrieval through focus variation for ultra-resolution in field-emission transmission electron microscopy. Physical Review Letters, 69(26):3743-3749, 1992. |
[420] | W.M.J. Coene, A. Thust, M. op de Beeck, and D. van Dyck. Maximum-likelihood method for focus-variation image reconstruction in high resolution transmission electron microscopy. Ultramicroscopy, 64:109-135, 1996. |
[421] | D. Coeurjolly, S. Miguet, and L. Tougne. Discrete curvature based on osculating circle estimation. In C. Arcelli, L.P. Cordella, and G. Sanniti di Baja, editors, Visual Form 2001, volume 2059 of Lecture Notes on Computer Science, pages 303-312, Capri, Italy, May 2001. Springer-Verlag. |
[422] | J.M. Coggins and A.K. Jain. A spatial filtering approach to texture analysis. Pattern Recognition Letters, 3:195-203, 1985. |
[423] | J.A.H. Cognet, C. Pakleza, D.I. Cherny, E. Delain, and E. le Cam. Static curvature and flexibility measurements of DNA with microscopy. A simple renormalization method, its assessment by experiment and simulation. Journal of Molecular Biology, 285(3):997-1009, 1999. |
[424] | A. Clifford Cohen and Betty Jones Whitten. Parameter estimation in reliability and life span models, volume 96 of Statistics: Textbooks and monographs. Marcel Dekker, Inc, New York, 1988. |
[425] | Adam E. Cohen and W.E. Moerner. Principle-component analysis of shape fluctuations of single DNA molecules. Proceedings of the National Academy of Sciences of the USA, 104(31):12622-12627, 2007. |
[426] | A.S. Cohen and A. Lapidoth. The Gaussian watermarking game. IEEE Transactions on Information Theory, 48(6):1639-1667, June 2002. |
[427] | E.A.K. Cohen and R.J. Ober. Image registration error analysis with applications in single molecule microscopy. In IEEE International Symposium on Biomedical Imaging, pages 966-969, Barcelona, Spain, May 2-5 2012. IEEE. |
[428] | F.S. Cohen and Z. Fan. Maximum likelihood unsupervised textured image segmentation. CVGIP: Graphical Models and Image Processing, 54(3):239-251, May 1992. |
[429] | L. Cohen. The history of noise. IEEE Signal Processing Magazine, 22(6):20-45, 2005. |
[430] | L.D. Cohen and R. Kimmel. Global minimum for active contour models: A minimal path approach. International Journal of Computer Vision, 24(1):57-58, 1997. |
[431] | C. Coltharp, R.P. Kessler, and J. Xiao. Accurate construction of photoactivated localization microscopy (palm) images for quantitative measurements. PLoS ONE, 7(12):e51725, 2012. |
[432] | J.W.D. Comeau, S. Constantino, and P.W. Wiseman. A guide to accurate fluorescence microscopy colocalization measurements. Biophysical Journal, 91(12):4611-4622, 2006. |
[433] | M. L. Comer and E. J. Delp. Morphological operations for color image processing. Journal of Electronic Imaging, 8(3):279-189, 1999. |
[434] | W.J. Conover. Practical Nonparametric Statistics. Wiley series in probability and mathematical statistics. Wiley, New York, Second edition edition, 1980. |
[435] | F. Constantinescu. Distributionen und ihre Anwendung in der Physik. Teubner, Stuttgart, 1974. |
[436] | J.F. Conway and A.C. Steven. Methods for reconstructing density maps of single particles from cryoelectron micrographs to subnanometer resolution. Journal of Strcutural Biology, 128:106-118, 1999. |
[437] | J.W. Cooley and J.W. Tukey. An algorithm for the machine calculation of complex Fourier series. Math. Comp., 19:297-301, April 1965. |
[438] | D. Cooper, R. Truche, P. Rivallin, J.-M. Hartmann, F. Laugier, F. Bertin, A. Chabli, and J.-L. Rouviere. Medium resolution off-axis electron holography with mv sensitivity. Applied Physics Letters, 2007. |
[439] | D.H. Cooper, B.R. Madsen, and J. Graham. Estimating motion in ultrasound images of the small bowel: Optical flow without image structure. In J. Bigün and T. Gustavsson, editors, SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis (Göteborg, Sweden), LNCS 2749, pages 571-578, Berlin, June 29 -July 2 2003. Springer-Verlag. |
[440] | T.F. Cootes, G.J. Edwards, and C.J. Taylor. Active appearance models. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23(6):681-685, June 2001. |
[441] | T. Cordes, M. Strackharn, S.W. Stahl, W. Summerer, C. Steinhauer, C. Forthmann, E.M. Puchner, J. Vogelsang, Gaub H.E., and P. Tinnefeld. Resolving single-molecule assembled patterns with superresolution blink-microscopy. Nano Letters, 10:645-651, 2010. |
[442] | T. Cordes, J. Vogelsang, M. Anaya, C. Spaguolo, A. Gietl, W. Summerer, A. Herrmann, K. Müllen, and P. Tinnefeld. Single-molecule redox blinking of perylene diimide derivatives in water. Journal of the American Chemical Society, 2010. |
[443] | R. Corless, G. Gonnet, D. Hare, D. Jeffrey, and D. Knuth. On the lambert-w function. Advances in Computational Mathematics, 5(1):329-359, 1996. |
[444] | A.J. Cosgriff, E.C .and D'Alfonso, L.J. Alleen, S.D. Findlay, A.I. Kirkland, and P.D. Nellist. Three-dimensional imaging in double aberration-corrected scanning confocal electron microscopy, part I: Elastic scattering. Ultramicroscopy, 2008. |
[445] | E.C. Cosgriff, M.P. Oxley, L.J. Allen, and S.J. Pennycock. The spatial resolution of imaging using core-loss spectroscopy in the scanning transmission electron microscope. Ultramicroscopy, 102:317-326, 2005. |
[446] | M. Coster and J.-L. Chermant. Image analysis and mathematical morphology for civil engineering materials. Cement & Concrete Composites, 23:133-151, 2001. |
[447] | S.V. Costes, D. Daelemans, E.H. Cho, Z. Dobbin, G. Pavlakis, and S. Lockett. Automatic and quantitative measurement of protein-protein colocalization in live cells. Biophysical Journal, 86:3993-4003, 2004. |
[448] | J.M. Cowely and A.F. Moodie. The scattering of electrons by thin crystals. Journal of the Physical Society of Japan, 17(supp B-II):86-91, 1962. |
[449] | J.M. Cowley. Image contrast in a transmission scanning electron microscope. Applied Physics Letters, 15(2):58-59, 1969. |
[450] | J.M. Cowley. STEM imaging with a thin annular detector. Journal of Electron Microscopy, 50(3):147-155, 2001. |
[451] | J.M. Cowley, M. Mankos, and M.R. Scheinfein. Greatly defocused, point-projection, off-axis electron holographyy. Ultramicroscopy, 63:133-147, 1966. |
[452] | J.M. Cowley and A.F. Moodie. The scattering of electrons by atoms and crystals. I. A new theorectial approach. Acta Crystallography, 10:609-620, 1957. |
[453] | J.M. Cowley and A.F. Moodie. The scattering of electrons by atoms and crystals. II. The effect of finite source size. Acta Crystallography, 12:353-360, 1959. |
[454] | J.M. Cowley and A.F. Moodie. The scattering of electrons by atoms and crystals. III. The single-crytal diffraction patterns. Acta Crystallography, 12:360-368, 1959. |
[455] | G. Cox and C.J.R. Sheppard. Practical limits of resolution in confocal and non-linear microscopy. MICROSCOPY RESEARCH AND TECHNIQUE, 63:18-22, 2004. |
[456] | I.J. Cox and C.J.R. Sheppard. Information capacity and resolution in an optical system. Journal of the Optical Society of America A, 3:1152-1158, 1986. |
[457] | I.J. Cox, C.J.R. Sheppard, and T. Wilson. Improvement in resolution by nearly confocal microscopy. Applied Optics, 21(5):778-781, 1982. |
[458] | R.W. Cox and T. Raoqiong. Two- and three-dimensional image rotation using the FFT. IEEE Transactions on Image Processing, 8(9):1297-1299, September 1999. |
[459] | S. Cox, E. Rosten, J. Monypenny, T. Jovanoivc-Talisman, D.T. Burnette, J. Lippincott-Schwartz, G.E. Jones, and R. Heintzmann. Bayesian localization microscopy reveals nanoscale podosome dynamics. Nature Methods, 9(2):195-200, 2012. |
[460] | F. Cozman. An informal introduction to quasi-Bayesian theory (and lower probability, lower expectations, choquet capacities, robust Bayesian methods, etc...) for AI. Technical report, The Robotics Institute, Carnegie Mellon University, Pittsburgh, USA, 1997. CMU-RI-TR-97-24. |
[461] | R.W. Cranage and P.S. Tofts. Ring artifacts in X-ray computed tomography. British Journal of Radiology, 61(726):529-529, 1988. |
[462] | N.A.C. Cressie. Statistics for Spatial Data. John Wiley & Sons, inc, revised edition, 1993. |
[463] | A.V. Crewe. The physics of the high-resolution scanning microscope. Rep. Prog. Phys., 43:621-642, 1980. |
[464] | A. Croisier, D. Esteban, and C. Galand. Perfect channel splitting by use of interpolation/decimation/tree decomposition techniques. In International Conference on Information Sciences and Systems, pages 443-446, Patras, Greece, August 1976. |
[465] | J.L. Crowley and A.C. Parker. A representation for shape based on peaks and ridges in the difference of low-pass transform. IEEE Transactions on Pattern Analysis and Machine Intelligence, 6(2):156-170, March 1984. |
[466] | P.A. Crozier. Book review: Transmission electron energy loss spectrometry in materials science and the eels atlas. Micron, 38:332, 2006. |
[467] | Imre Csiszar. Why Least Squares and Maximum Entropy? An Axiomatic Approach to Inference for Linear Inverse Problems. The Annals of Statistics, 19(4):2032-2066, 1991. |
[468] | R. Cucchiara and F. Filicori. The vector-gradient hough transform. IEEE Transactions on Pattern Recognition and Machine Intelligence, 20(7):746-750, July 1998. |
[469] | Xiquan Cui, Lap Man Lee, Xin Heng, Weiwei Zhong, Paul W. Sternberg, Demetri Psaltis, and Changhuei Yang. Lensless high-resolution on-chip optrofluidic microscopes for Caenorhabditis elegans and cell imaging. Proceedings of the National Academy of Sciences of the USA, 105(31):10670-10675, 2008. |
[470] | O. Cuisenaire and B. Macq. Fast euclidean distance transformation by propagation using multiple neighborhoods. Computer Vision and Image Understanding, 76(2):163-172, 1999. |
[471] | T.J. Cullip, R.E. Fredericksen, J.M. Gauch, and S.M. Pizer. Algorithms for 2d and 3d image description based on the ias. Technical report, University of North Carolina, U.S.A., 1990. TR90-034. |
[472] | P.J. Culter, M.D. Malik, L. Sheng, J.M. Byars, D.S. Lidke, and K.A. Lidke. Multi-color quantum dot tracking using a high-speed hyperspectral line-scanning microscope. PLOS One, 8(5):e64320, 2013. |
[473] | B.P. Cumming, A. Jesacher, M.J. Booth, T. Wilson, and M. Gu. Adaptive aberration compensation for three-dimensional micro-fabrication of photonic crystals in lithium niobate. Optics Express, 19(10):9419-9426, 2011. |
[474] | S.R. Curtis and A.V. Oppenheim. Reconstruction of multidimensional signals from zero crossings. Journal of the Optical Society of America A, 4(1):221-231, January 1987. |
[475] |
Aur élien Cut, Daniel A. Koster, Ralf Seidel, Chris H. Wiggins, and Nynke H. Dekker. Fast dynamics of supercoiled DNA revealed by single-molecule experiments. Proceedings of the National Academy of Sciences of the USA, 104(29):11957-11962, 2007. |
[476] | M. Dahan, S. Levi, C. Luccardini, P. Rostaing, B. Riveau, and A. Triller. Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking. Science, 302(5644):442-445, 2003. |
[477] | N. Daigle, J. Beaudouin, L. Hartnell, G. Imreh, E. Hallberg, J. Lippincott-Schwartz, and J. Ellenberg. Nuclear pore complexes from immobile networks and have a very low turnover in mammalian cells. Journal of Cell Biology, 154:71-84, 2001. |
[478] | G. van Dalen. Determination of the water droplet size distribution of fat spreads using confocal scanning laser microscopy. Journal of Microscopy, 208 Pt. 2:116-133, November 2002. |
[479] | A.J. D'Alfonso, E.C. Cosgriff, G. Behan, A.I. Kirkland, and P.D. Nellist. Three-dimensional imaging in double aberration-corrected scanning confocal electron microscopy, part II: Inelastic scattering. Ultramicroscopy, 108:1567-1578, 2008. |
[480] | H.I.C. Dalgarno, P.A. Dalgarno, A.C. Dada, C.E. Towers, G.J. Gibson, R.M. Parton, I. Davis, Warburton R.J., and A.H. Greenaway. Nanometric depth resolution from multi-focal images in microscopy. Journal of the royal society, 8:942-951, 2011. |
[481] | D. Dan, M. Lei, B. Yao, W. Wang, M. Winterhalder, A. Zumbusch, Y. Qi, L. Xia, S. Yan, Y. Yang, P. Gao, T. Ye, and W. Zhao. DMD-based LED-illumination super-resolution and optical sectioning microscopy. Scientific Reports, 3:1116, 2013. |
[482] | R. Danev and K. Nagayama. Applicability of thin film phase plates in biological electron microscopy. Biophysics, 2:35-43, 2006. |
[483] | T. Dange, D. Grünwald, A. Grünwald, R. Peters, and U. Kubitscheck. Autonomy and robustness of thranslocation through the nuclear pore complex: a single molecule study. Journal of Cell Biology, 183(1):77-86, 2008. |
[484] | M.A. D'Angelo and M.W. Hetzer. Structure, dynamics and function of nuclear pore complexes. Trends in Cell Biology, 18(10):456-466, 2008. |
[485] | A. Dani, B. Huang, J. Bergan, C. Dulac, and X. Zhuang. Superresolution imaging of chemical synapses in the brain. Neuron, 68:843-856, 2010. |
[486] | H.E. Daniels. The statistical theory of stiff chains. Proceedings of the Royal Society Edinburgh A, 63:290-311, 1952. |
[487] | P.-E. Danielsson. Euclidean distance mapping. Computer Graphics and Image Processing, 14:227-248, 1980. |
[488] | P.-E. Danielsson. Rotation-invariant linear operators with directional response. In Proceedings of the 5th international conference on Pattern Recognition (Miami Beach, Florida), volume 2, pages 1171-1176, December 1980. |
[489] | P.-E. Danielsson and Q. Lin. A new shape space for second order 3d-variations. Technical report, Linköping University, Sweden, October 2000. LiTH-ISY-R-2299. |
[490] | P.-E. Danielsson, Q. Lin, and Q.-Z. Ye. Efficient detection of second-degree variations in 2D and 3D images. Journal of Visual Communication and Image Representation, 12:255-305, 2001. |
[491] | P.-E. Danielsson and O. Seger. Rotation invariance in gradient and higher order derivative detectors. Computer Vision, Graphics, and Image Processing, 49(2):198-221, 1990. |
[492] | I. Daubechies. The wavelet transform, time-frequency localization and signal analysis. IEEE Transactions on Information Theory, 36(5):961-1005, September 1990. |
[493] | I. Daubechies, A. Grossmann, and Y. Meyer. Painless nonorthogonal expansions. J. Math. Phys., 27:1271-1283, 1986. |
[494] | J.G. Daugman. Uncertainty relation for resolution in space, spatial frequency, and orientation optimized by two-dimensional visual cortical filters. Journal of the Optical Society of America A, 2(7):1160-1169, July 1985. |
[495] | J.G. Daugman. Pattern and motion vision without laplacian zero-crossings. Journal of the Optical Society of America A, 5(7):1142-1148, 1988. |
[496] | T.L. Daulton and B.J. Little. Determination of chromium valence over the range Cr(0)-Cr(VI) by electron energy loss spectroscopy. Ultramicroscopy, 106:561-573, 2006. |
[497] | C.A. Davey and T.J. Richmond. DNA-dependent divalent cation binding in the nucleosome core particle. Proceedings of the National Academy of Sciences of the United States of America, 99:11169-11174, 2002. |
[498] | John A. Davidson. Arrays of Uniform Latex Spheres as Test Objects in Optical Microscopy. Particle and Particle Systems Characterization, 12:173-178, 1995. |
[499] | R.W. Davis, M. Simon, and N. Davidson. Electron microscope heteroduplex methods for mapping regions of base sequence homology in nucleic acids, volume 21D of Methods in Enzymology, pages 413-428. Academic Press, London, 1971. |
[500] | Carl de Boor. A Practical Guide to Splines. Springer-Verlag, New York, 2001. |
[501] | P.G. De Gennes. Dynamics of entangled polymer solutions. I. the rouse model. Macromolecules, 9(4):587-593, 1976. |
[502] | P.G. De Gennes. Dynamics of entangled polymer solutions. II. inclusion of hydrodynamic interactions. Macromolecules, 9(4):594-598, 1976. |
[503] | S.R. Deans. Hough transform from the Radon transform. IEEE Transactions on Pattern Analysis and Machine Intelligence, 3(2):185-188, March 1981. |
[504] | D. Debarre, M.J. Booth, and T. Wilson. Image based adaptive optics through optimisation of low spatial frequencies. Optics Express, 15(13):8176-8190, 2007. |
[505] | E.W. Debler, Y. Ma, H.S. Seo, K.C. Hsia, T.R. Noriega, G. Blobel, and A. Hoelz. A fence-like coat for the nuclear pore membrane. Molecular Cell, 32:815-826, 2008. |
[506] | P. Debye and E. Hückel. The theory of electrolytes. I. lowering of freezing point and related phenomena. Physikalische Zeitschrift, 24:185-206, 1923. |
[507] | P. Dedecker, B. Muls, A. Deres, H. Uji-i, J. Hotta, M. Sliwa, J.-P. Soumillion, K. Müllen, J. Enderlein, and J. Hofkens. Defocused wide-field imaging unravels structural and temporal heterogeneity in complex systems. Advanced Materials, 21:1079-1090, 2012. |
[508] | P. Dedecker, B. Muls, J. Hofkens, J. Enderlein, and J. Hotta. Orientational effects in the excitation and de-excitation of single molecules interacting with donut-mode laser beams. Optics Express, 15:3372-3383, 2007. |
[509] | R.D. Deegan, O. Bakajin, T.F. Dupont, G. Huber, S.R. Nagel, and T.A. Witten. Capillary flow as the cause of ring stains from dried liquid drops. Nature, 389:827-829, 1997. |
[510] | R.D. Deegan, O. Bakajin, T.F. Dupont, G. Huber, S.R. Nagel, and T.A. Witten. Contact line deposits in an evaporating drop. Physical Review E, 62(1):756-765, 2000. |
[511] | A.J. den Dekker, S. van Aert, D. van Dyck, A. van den Bos, and P. Geuens. Does a monochromator improve the precision in quantitative HRTEM? Ultramicroscopy, 89:275-290, 2001. |
[512] | A.J. den Dekker and A. van den Bos. Resolution: a survey. Journal of the Optical Society of America A, 14(3):547-557, 1997. |
[513] | A.J. den Dekker, J. Sijbers, and D. van Dyck. How to optimize the design of a quantitative HREM experiment so as to attain the highest precision. Journal of Microscopy, 194(1):95-104, 1999. |
[514] | E.W. Delber, Y. Ma, H.-S. Seo, K.-C. Hsia, T.R. Noriega, G. Blobel, and A. Hoelz. A fence-like coat for the nuclear pore membrane. Molecular Cell, 32:815-826, 2008. |
[515] | P. van Delft and J. Botermans. Magische vierkanten. uit “Spelen met Puzzels”. |
[516] | A. Delon, Y. Usson, J. Derouard, T. Biben, and C. Souchier. Photobleaching, mobility, and compartmentalisation: Inferences in fluorescence correlation spectroscopy. Journal of Fluorescence, 14(3):255-267. |
[517] | D. Demandolx and J. Davoust. Multicolour analysis of local image correlation in confocal microscopy. Journal of Microscopy, 185(1):21-36, 1997. |
[518] | M. Demirel and D.I. Cherny. Clustering and diversity of fluctuations for proteins. Journal of Nanomedicine, 1:41-46, 2005. |
[519] | G. DeMoment. Image reconstruction and restoration: Overview of common estimation structures and problems. IEEE Transactions on Acoustics, Speech, and Signal Processing, 37(12):2024-2036, December 1989. |
[520] | G.T. Dempsey, M. Bates, W.E. Kowtoniuk, D.R. Liu, R.Y. Tsien, and X. Zhuang. Photoswitching mechanism of cyanine dyes. Journal of the American Chemical Society, 131(51):18192-18193, 2009. |
[521] | G.T. Dempsey, J.C. Vaughan, K.H. Chen, M. Bates, and X. Zhuang. Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging. Nature Methods, 8(12):1027-1031, 2011. |
[522] | A.P. Demster, N.M. Laird, and D.B. Rubin. Maximum likelihood from incomplete data via the EM algorithm. Journal of the Royal Statistical Society B, 39:1-37, 1977. |
[523] | Yi. Deng and Joshua W. Shaevitz. Effect of aberration on height calibration in three-dimensional localization-base microscoyp and particle tracking. Applied Optics, 48(10):1886-1890, 2009. |
[524] | G. Deptuch, A. Besson, P. Rehak, M. Szelezniak, J. Wall, M. Winter, and Y. Zhu. Direct electron imaging in electron microscopy with monolithic active pixel sensors. Ultramicroscopy, 107:674-684, 2007. |
[525] | A.-S. Dequiedt, M. Coster, L. Chermant, and J.-L. Chermant. Study of phase dispersion in concrete by image analysis. Cement & Concrete Composites, 23:215-226, 2001. |
[526] | R. Deriche. Fast algorithms for low-level vision. IEEE Transactions on Pattern Analysis and Machine Intelligence, 12(1):78-87, January 1990. |
[527] | B. Derjaguin and L. Landau. Theory of the stability of strongly charged lyophobic sols and of the adhesion of strongly charged particles in solutions of electrolytes. Acta Physico Chimica URSS, 14, 1941. |
[528] | D. DeRosier, D.L. Stokes, and S.A. Darst. Averaging data derived from images of helical structures with different symmetries. Journal of Molecular Biology, 289:159-165, 1999. |
[529] | D.J. DeRosier. Correction of high-resolution data for curvature of the Ewald sphere. Ultramicrosocpy, 81(2):83-98, 2000. |
[530] | T. Dertinger, R. Colyer, G. Iyer, S. Weiss, and J. Enderlein. Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI). Proceedings of the National Academy of Sciences USA, 106(52):22287-22292, 2009. |
[531] | T. Dertinger, R. Colyer, R. Vogel, J. Enderlein, and S. Weiss. Achieving increased resolution and more pixels with superresolution optical fluctuation imaging (SOFI). Optics Express, 18(18):18875-11885, 2010. |
[532] | T. Dertinger, V. Pacheco, I. van der Hocht, R. Hartmann, I. Gregor, and J. Enderlein. Two-focus fluorescence correlation spectroscopy: A new tool for accurate and absolute diffusion measurements. ChemPhysChem, 8:433-443, 2007. |
[533] | L. Desbat. Efficient sampling on coarse grids in tomography. Inverse Problems, 9:251-269, 1993. |
[534] | T. Deschamps and L.D. Cohen. Fast extraction of minimal paths in 3d images and applications to virtual endoscopy. Medical Image Analysis, 5(4):281-299, 2001. |
[535] | H. Deschout, K. Neyts, and K. Breaeckmans. The influence of movement on the localization precision of sub-resolution particles in fluorescence microscopy. Journal of Biophotonics, 5(1):97-109, 2012. |
[536] | A. Desolneux, S. Ladjal, L. Moisan, and J.-M. Morel. Dequantizing image orientation. IEEE Transactions on Image Processing, 11(10):1129-1140, 2002. |
[537] | A. Desolneux, L. Moisan, and J.-M. Morel. Edge detection by Helmholtz principle. Journal of Mathematical Imaging and Vision, 14:271-284, 2001. |
[538] | M. N. Dessinges, B. Maier, Y. Zhang, M. Peliti, D. Bensimon, and V. Croquette. Stretching Single Stranded DNA, a Model Polyelectrolyte. Physical Review Letters, 89(24):248102-248106, 2002. |
[539] | Nicolas Destainville, Manoel Manghi, and John Palmeri. Microscopic mechanism for experimentally observed anomalous elasticity of dna in two dimensions. Biophysical Journal, 96(11):4464-4469, 2009. |
[540] |
Nicolas Destainville and Laurence Salom é. Quantification and Correction of Systematic Erros Due to Detector Time-Averaging in Single-Molecule Tracking Experiments. Biophysical Journal, 90(2):L17-L19, 2006. |
[541] | Abhishek Dhar and Debasish Chaudhuri. Triple Minima in the Free Energy of Semiflexible Polymers. Physical Review Letters, 89(6):065502, 2002. |
[542] | S. di Zeno. A note on the gradient of a multi-image. Computer Vision, Graphics, and Image Processing, 33:166-125, 1986. |
[543] | N. Diehl and H. Burkhardt. Planar motion estimation with a fast converging algorithm. In Proc. 8th Int. Conf. Pattern Recognition, ICPR'86, pages 1099-1102, Paris, France, 1989. |
[544] | K. Dierksen, D. Typke, R. Hegerl, A.J. Koster, and W. Baumeister. Towards automatic electron tomography. Ultramicroscopy, 40:71-87, 1992. |
[545] | Chrisian Dietrich, Bing Yang, Takahiro Fujiwara, Akihiro Kusumi, and Ken Jacobson. Relationship of Lipid Rafts to Transient Confinement Zones Detected by Single Particle Tracking. Biophysical Journal, 82(1):274-284, 2002. |
[546] | Heidelinde R. C. Dietrich, Bernd Rieger, Frank G.M. Wiertz, Frederik H. de Groote, Hendrik A. Heering, Ian T. Young, and Yuval Garini. Tethered particle motion mediated by scattering from gold nanoparticles and darkfield microscopy. Journal of Nanophotonics, 3:031795, 2009. |
[547] | Heidelinde R.C. Dietrich, Bart J. Vermolen, Bernd Rieger, Ian T. Young, and Yuval Garini. A new optical method for characterizing single molecule interactions based on dark field microscopy. In J. Enderlein and Z.K. Gryczynski, editors, Ultrasensitive and Single-Molecule Detection Technologies II, volume 6444, pages 644403-1 - 64403-8. Proceedings of SPIE, 2007. |
[548] |
Heidelinde R.C. Dietrich, Ian T. Young, and Yuval Garini.
Advances in the Development of a Novel Method to be used in
Proteomics using Gold Nanobeads.
In J örg Enderlein and Zygmunt K. Gryczynski, editors, Ultrasensitive and Single-Molecule Detection Technologies, volume 6092. Proceedings of SPIE, 2006. |
[549] | H.R.C. Dietrich, J. Knoll, L.R. van den Doel, G.W.K. van Dedem, P.A.S. Daran-Lapujade, L.J. van Vliet, R. Moerman, J.R. Pronk, and I.T. Young. Nanoarrays: A method for performing enzymatic assays. Analytical Chemistry, 76(14):4112-4117, 2004. |
[550] | C.D. Diez, H. Mueller, and A.S. Frangakis. Implementation and performance evaluation of reconstruction algorithms on graphics processors. Journal of Strcutural Biology, 157:288-295, 2007. |
[551] | D.C. Diez, A. Seybert, and A.S. Frangakis. Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis. Journal of Strcutural Biology, 154(2):195-205, 2006. |
[552] | H. Digabel and C. Lantuéjoul. Quantitative Analysis of Microstructures in Materials Sciences, Biology and Medicine, chapter Iterative Algorithms, pages 85-99. Dr. Rieder-Verlag, Stuttgart, 1978. |
[553] | M.A. Digman, C.M. Brown, P. Sengupta, P.W. Wiseman, A.R. Howritz, and E. Grattown. Measuring fast dynamics in solutions and cells with a laser scanning microscope. Biophysical Journal, 89:1317-1327, 2005. |
[554] | M.A. Digman, P. Sengupta, P.W. Wiseman, C.M. Brown, A.R. Howritz, and E. Grattown. Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure. Biophysical Journal - Biophysical Letters, 2005. |
[555] | M.A. Digman, P.W. Wiseman, A.R. Horwitz, and E. Gratton. Detecting protein complexes in living cells from laser scanning confocal image sequences by the cross correlation raster image spectroscopy method. Biophysical Journal, 96:707-716, 2009. |
[556] | J. Dijk, M. van Ginkel, R.J. van Asselt, L.J. van Vliet, and P.W. Verbeek. A new sharpness measure based on gaussian lines and edges. In E.F. Deprettere, A. Belloum, J.W.J. Heijnsdijk, and F. van der Stappen, editors, Proc. ASCI 2002, 8th Annual Conf. of the Advanced School for Computing and Imaging, pages 39-44, Delft, June 19-21 2002. ASCI. |
[557] | J. Dijk, M. van Ginkel, R.J. van Asselt, L.J. van Vliet, and P.W. Verbeek. A new sharpness measure based on gaussian lines and edges. In N. Petkov and M.A. Westenberg, editors, CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands), volume 2756 of Lecture Notes in Computer Science, pages 149-156, Berlin, Aug 25-27 2003. Springer. |
[558] | E.W. Dijkstra. A note on two problems in connexion with graphs. Numerische Mathematik, 1:269-271, 1959. |
[559] | E.W. Dijkstra. Why numbering should start at zero. PDF file, August 11 1982. |
[560] | Edmund A. DiMarzio. Proper Accounting of Conformations of a Polymer Near a Surface. The Journal of Chemical Physics, 42(6):2101-2106, 1965. |
[561] | Edmund A. DiMarzio and Frank L. McCrackin. One-Dimensional Model of Polymer Adsorption. The Journal of Chemical Physics, 43(2), 1965. |
[562] | P. Dirac. The physical interpretation of the quantum dynamics. Proceedings of the Royal Society of London, A113:621-641, 1927. |
[563] | R.W. Dirks, C.M. Hattinger, C. Molenaar, and S.P. Snaar. Synthesis, processing, and transport of RNA within the three-dimensional context of the cell nucleus. Crit Rev Eukaryot Gene Expr, 9(3-4):191-201, 1999. |
[564] | R.W. Dirks, C. Molenaar, and H.J. Tanke. Visualizing RNA molecules inside the nucleus of living cells. Methods, 29(1):51-57, 2003. |
[565] | R.W. Dirks, R.W. Molenaar, and H.J. Tanke. Methods for visualizing rna processing and transport pathways in living cells. Histochemistry and Cell Biology, 115(1):3-11, 2001. |
[566] | M.P. do Carmo. Differential Geometry of Curves and Surfaces. Prentice Hall, New Jersey, 1976. |
[567] | J.W. Dobrucki, D. Feret, and A. Noatynska. Scattering of exciting light by live cells in fluorescence confocal imaging: Phototoxic effects and relevance for FRAP studies. Biophysical Journal, 93:1778-1786, 2007. |
[568] | L.R. van den Doel. Quantitative Microscopic Techniques for Monitoring Dynamic Processes in Microarrays. PhD thesis, Delft University of Technology, Delft, The Netherlands, 2002. |
[569] | L.R. van den Doel and L.J. van Vliet. Quantitative evaluation of light microscopes based on image processing techniques. Bioimaging, 6(3):138-149, 1998. |
[570] | L.R. van den Doel and L.J. van Vliet. Temporal phase unwrapping algorithm for dynamic interference pattern analysis in interference-contrast microscopy. Applied Optics, 40(25):4487-4500, 2001. |
[571] | Kathleen M. Dohoney and Jeff Gelles. Chi-Sequence recognition and DNA translocation by single RecBCD helicase/nuclease molecules. Nature, 409:370-374, 2001. |
[572] | M. Doi and S.F. Edwards. The Theory of Polymer Dynamics. Oxford University Press, New York, 1986. |
[573] | I. Dologlou and G. Carayannis. Physical interpretation of signal reconstruction from reduced rank matrices. IEEE Transactions on Signal Processing, 39(7):1681-1682, July 1991. |
[574] | I. Dologlou, J.-C. Pesquet, and J. Skowronski. Projection-based rank reduction algorithms for multichannel modeling and image compression. Signal Processing, 48(2):97-109, 1996. |
[575] | H. Dömer and O. Bostanjoglo. High-speed transmission electron microscope. Review of Scientific Instruments, 74(10):4369-4372, 2003. |
[576] | X.F. Dong, P. Natarajan, M. Tihova, J.E. Johnson, and A. Schneemann. Particle polymorphism caused by deletion of a peptide molecular switch in a quasiequivalent icosahedral virus. Journal of Virology, 72:6024-6033, 1998. Ultramicroscopy. |
[577] | G. Donnert, J. Keller, R. Medda, M.A. Andrei, S.O. Rizzoli, R. Lührmann, R. Jahn, C. Eggeling, and S.W. Hell. Macromolecular-scale resolution in biological fluorescence microscopy. Proceedings of the National Academy of Sciences USA, 103(31):11440-11445, 2006. |
[578] | D.L. Donoho. Compressed sensing. IEEE Transactions of Information Theory, 52(4):1289-1306, 2006. |
[579] |
Christian Donzel, Matthias Geissler, Andr é Bernard, Heiko Wolf, Bruno Michel, J öns Hilborn, and Emmanuel Delamarche. Hydrophilic Poly(dimethylsiloxane) Stamps for Microcontact Printing. Advanced Materials, 13(15), 2001. |
[580] | S.N. Dorenbos, E.M. Reiger, U. Perinetti, V. Zwiller, T. Zijlstra, and T.M. Klapwijk. Low noise superconducting single photon detectors on silicon. Applied Physics Letters, 93:131101, 2008. |
[581] | K.-A. Dorph-Petersen, H.J.G. Gundersen, and E.B.V. Jensen. Non-uniform systematic sampling in stereology. Journal of Microscopy, 200, Pt 2:148-157, November 2000. |
[582] | L. Dorst. A coordinate system for the crystal ball. Technical report, CERN, 1980. |
[583] | L. Dorst. Clifford algebra: a practical tool for efficient geometrical representation, 1999. Tutorial presentation. |
[584] | L. Dorst and R. van den Boomgaard. An analytical theory of mathematical morphology. In J. Serra and P. Salembier, editors, Mathematical Morphology and its Applications to Signal Processing, pages 245-250. Universitat Politecnica de Catalunya (Barcelona, Spain), 1993. |
[585] | L. Dorst and R. van den Boomgaard. Morphological signal processing and the slope transform. Signal Processing, 38:79-98, 1994. |
[586] | L. Dorst and R. van den Boomgaard. World Scientific, chapter Orientation-based Representations for Mathematical Morphology, pages 13-22. 1995. |
[587] | L. Dorst and R. van den Boomgaard. The support cone: A representational tool for the analysis of boundaries and their interactions. IEEE Transactions on Pattern Analysis and Machine Intelligence, 22(2):174-178, February 2000. |
[588] | L. Dorst, S. Mann, and T. Bouma. GABLE: A matlab tutorial for geometric algebra, December 1999. |
[589] | L. Dorst and A.W.M. Smeulders. Best linear unbiased estimators for properties of digitized straight lines. IEEE Transactions on Pattern Analysis and Machine Intelligence, 8(2):276-282, March 1986. |
[590] | L. Dorst and A.W.M. Smeulders. Length estimators for digitized contours. Computer Vision, Graphics and Image Processing, 40:311-333, 1987. |
[591] | Edward R. Dougherty. Optimal conjunctive granulometric bandpass filters. Journal of Mathematical Imaging and Vision, 14:39-51, 2001. |
[592] | K.H. Downing. Possibilities of heavy atom discrimination using single-sideband techniques. Ultramicroscopy, 4:13-31, 1979. |
[593] | K.H. Downing, M.R. McCartney, and R.M. Glaeder. Experimental characterization and mitigation of specimen charging on thin films with one conducting layer. Microscopy and Microanalysis, 10:783-789, 2004. |
[594] | K.H. Downing and B.M. Siegel. Discrimination of heavy and ligth components in electron microscopy using single-sideband holographic techniques. Optik, 42:155-175, 1975. |
[595] | L.F. van Driel, J.A. Valentijn, K.M. Valentijn, R.I. Koning, and A.J. Koster. Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells. European Journal of Cell Biology, 88:669-684, 2009. |
[596] | K. van den Dries, M.B.M. Meddens, S de Keijzer, S. Shekhar, V. Subramaniam, C.G. Figdor, and A. Cambi. Interplay between myosin IIA-mediated contractility and actin network integrity orchestrates podosome composition and oscillations. Nature Communications, 4:1412, 2013. |
[597] | L.F. Drummy, J. Yang, and D.C. Martin. Low-voltage electron microscopy of polymer and organic molecular thin films. Ultramicroscopy, 99:247-256, 2004. |
[598] | K. Du, K. von Hochmeister, and F. Philipp. Quantitative comparison of image contrast and pattern between experimental and simulated high-resolution transmission electron micrographs. Ultramicroscopy, 107:281-292, 2007. |
[599] | J. Dubochet, M. Adrian, J.-J. Chang, J.-C. Homo, J. Lepault, and P. McDowall, A.W.and Schultz. Cryo-electron microscopy of vitrified specimens. Quarterly Review of Biophysics, 21:129-228, 1988. |
[600] | J.N. Dubowy and G.T. Herman. An approach to the correction of distance-dependent defocus in electron microscopic reconstruction. volume 3 of IEEE International Conference on Image Processing, pages 748-751, 2005. |
[601] | B. Dubuc and S.W. Zucker. Complexity, confusion, and perceptual grouping. part I: The curve-like representation. Journal of Mathematical Imaging and Vision, 15(1-2):55-82, 2001. |
[602] | B. Dubuc and S.W. Zucker. Complexity, confusion, and perceptual grouping. part II: Mapping complexity. Journal of Mathematical Imaging and Vision, 15(1-2):83-116, 2001. |
[603] | C. Ducroz, J.-C. Olivio-Marin, and A. Dufor. Characterization of cell shape and deformation in 3d using spherical harmonics. In IEEE International Symposium on Biomedical Imaging, Barcelona, Spain, May 2-5 2012. IEEE. |
[604] | R.O. Duda and P.E. Hart. Use of the Hough transformation to detect lines and curves in pictures. Communications of the ACM, 15(1):11-15, 1972. |
[605] | R.O. Duda, P.E. Hart, and D.G. Stork. Pattern Classification. John Wiley & Sons, second edition, 2001. |
[606] | D.E. Dudgeon and R.M. Merserau. Multidimensional Digital Signal Processing. Prentice-Hall, 1984. |
[607] | N. Dudkina, M. Kudryashev, H. Stahlberg, and E.J. Boekema. Interaction of complexes I, III, and IV within the bovine respirasome by single particle cryoelectron tomography. Proceedings of the National Academy of Science USA, 108(37):15196-15200, 2011. |
[608] | R.J. Duffin and A.C. Schaeffer. A class of nonharmonic Fourier series. Transactions of the American Mathematical Society, 72:341-366, March 1952. |
[609] | J.L. Dugelay and H. Sanson. Differential methods for the identification of 2d and 3d motion models in image sequences. Signal Processing: Image Communication, 7:105-127, 1995. |
[610] | P. Duhamel, B. Piron, and J.M. Etcheto. On computing the inverse dft. IEEE Transactions on Acoustics, Speech and Signal Processing, 36(2):285-286, February 1988. |
[611] | R. Duits, L.M.J. Florak, J. de Graaf, and B.M. ter Haar Romey. On the axioms of scale space theory. Journal of Mathematical Imaging and Vision, 20(3):267-298, 2004. |
[612] | F.A.L. Dullien. Porous Media - Fluid Transport and Pore Structure. Academic Press, second edition, 1979, 1992. |
[613] | J.S. Duncan, F.A. Lee, A.W.M. Smeulders, and B.L. Zaret. A bending energy model for measurement of cardiac shape deformaty. IEEE Transactions on Medical Imaging, 10(3):307-319, 1991. |
[614] | K.W. Dunn, M.M. Kamocka, and J.H. McDonald. A practical guide to evaluating colocalization in biological microscopy. American Journal of Physiology: Cell Physiology, 300(4):C723-C742, 2011. |
[615] | J. Durnin, Jr. Miceli, J.J., and J.H. Eberly. Diffraction-Free Beams. Physical Review Letters, 58(15):1499-1501, 1987. |
[616] | G. Duscher, R. Buczko, S.J. Pennycook, and S.T. Pantelides. Core-hole effects on energy-loss near-edge structure. Ultramicroscopy, 86:355, 2001. |
[617] | P.M. van Duynhoven, G.M.P. van Kempen, R. van Sluis, B. Rieger, P. Weegels, L.J. van Vliet, and K. Nicolay. Quantitative assessment of gas cell development during the proofing of dough by magnetic resonance imaging and image analysis. Cereal Chemistry, 80(4):360-369, 2003. |
[618] |
Zdenek Dvor ák, Jean-Marc Pascussi, and Martin Modriansk ý. Approaches to Messenger RNA Detection - Comparison of Methods. Biomedical Papers, 147(2):131-135, 2003. |
[619] | C. Dwyer. Simulation of scanning transmission electron microscope images on desktop computers. Ultramicroscopy, 110:195-198, 2010. |
[620] | C. Dwyer, R. Erni, and J. Etheridge. Method to measure spatial coherence of subangstrom electron beams. Applied Physics Letters, 93:021115, 2008. |
[621] | C. Dwyer, A.I. Kirkland, P. Hartel, H. Müller, and M. Haider. Electron nanodiffraction using sharply focused parallel probes. Applied Physics Letters, 90:151104, 2007. |
[622] | D. van Dyck. Persistent misconceptions about incoherence in electron microscopy. Ultramicroscopy, 111:894-900, 2011. |
[623] | D. van Dyck, S. van Aert, and A.J. den Dekker. Physical limits on atomic resolution. Microscopy and Microanalysis, 10:153-157, 2004. |
[624] | D. van Dyck, S. van Aert, A.J. den Dekker, and A. van den Bos. Is atomic resolution transmission electron microscopy able to resolve and re ne amorphous structures? Ultramicroscopy, 98:27-42, 2003. |
[625] | D. van Dyck, H. Lichte, and K.D. van der Mast. Sub-ångström structure characterisation: the Brite-Euram route towarde one ångström. Ultramicroscopy, 64:1-15, 1996. |
[626] | D.A. Eastham, P. Edmondson, S. Greene, S. Donnelly, E. Olsson, K. Svensson, and A. Bleloch. A design for a subminiature, low energy scanning electron microscope with atomic resolution. Journal of Appplied Physics, 105:014702, 2009. |
[627] | H. Ebeling and G. Wiedemann. Detecting structure in two dimensions combining voronoi tessellation and percolation. Physical Review E, 47(1):704-710, January 1993. |
[628] | Y. Ebenstein, N. Gassman, S. Kim, J. Antelman, Y. Kim, S. Ho, R. Samuel, X. Michalet, and S. Weiss. Lighting up individual DNA binding proteins with quantum dots. Nano Letters, 9(4):1598-1603, 2009. |
[629] | D. Eberly and J. Lancaster. On gray scale image measurements. I. arc length and area. CVGIP: Graphical Models and Image Processing, 53(6):538-549, November 1991. |
[630] | D. Eberly, J. Lancaster, and A. Alyassin. On gray scale image measurements. II. surface area and volume. CVGIP: Graphical Models and Image Processing, 53(6):550-562, November 1991. |
[631] | C. Ecker. Conformations of single polymer chains on surfaces. PhD thesis, Humboldt-Universität zu Berlin, Berlin, September 2004. |
[632] | I.A. Eckley. Wavelet Methods for Time Series and Spatial Data. PhD thesis, University of Bristol, Bristol, United Kingdom, September 2001. |
[633] | A. Edelman, P. McCorquodale, and S. Toledo. The future fast Fourier transform? SIAM Journal on Scientific Computing, 20(3):1094-1114, 1999. |
[634] | C.J. Edgcombe, A.R. Lupini, and J.H. Taylor. Robust optimization for magnetic lens design. Nuclear Instruments and Methods in Physics Research A, 427:306-309, 1999. |
[635] | S.F. Edwards. Theory of the Single Chain. Discussions of the Faraday Society, 49:43, 1970. |
[636] | A.L. Efros and M. Rosen. Random telegraph signal in the photoluminescence intensity of a single quantum dot. Physical Review Letters, 78(6):1110-1113, 1997. |
[637] | E.H. Egelman. The iterative helical real space reconstruction method: Surmounting the problems posed by real polymers. Journal of Strcutural Biology, 157:83-94, 2007. |
[638] | R.F. Egerton. New techniques in electron energy-loss spectroscopy and energy-filtered imaging. Micron, 34:127-139, 2003. |
[639] | R.F. Egerton. Limits to the spatial, energy and momentum resolution of electron energy-loss spectroscopy. Ultramicroscopy, 107:575-586, 2007. |
[640] | R.F. Egerton. Electron energy-loss spectroscopy in the tem. Reports on Progress in Physics, 72:016502, 2009. |
[641] | R.F. Egerton, P. Li, and M. Malac. Radiation damage in the tem and sem. Micron, 35:399-409, 2004. |
[642] | C. Eggeling, C. Ringemann, R. Medda, G. Schwarzmann, K. Sandhoff, S. Polyakova, V.N. Belov, B. Hein, C. von Middendorff, A. Schönle, and S. W. Hell. Direct observation of the nanoscale dynamics of membrane lipids in a living cell. Nature, 457:1159-1163, 2009. |
[643] | H. Eggers. Two fast euclidean distance transformations in z2 based on sufficient propagation. Comput. Vision Image Understanding, 69(1):106-116, 1998. |
[644] | A. Egner, C. Geisler, C. von Middendorff, H. Bock, D. Wenzel, R. Medda, M. Andresen, A.C. Stiel, S. Jakobs, C. Eggeling, A. Schönle, and S.W. Hell. Fluorescence nanoscopy in whole cells by asynchronous localization of photoswitching emitters. Biophysical Journal, 93(9):3285-3290, 2007. |
[645] | A. Egner, S. Verrier, A. Goroshkov, H-D. Shing, and S.W. Hell. 4Pi-microscopy of the Golgi apparatus in live mammalian cells. Journal of Structural Biology, 147(1):70-76, 2004. |
[646] | M. V. Ehrensperger, C. Hanus, C. Vannier, A. Triller, and M. Dahan. Multiple association states between glycine receptors and gephyrin identified by spt analysis. Biophysical Journal, 92(10):3706-3718, 2007. |
[647] | R.W. Ehrich and P.F. Lai. Elements of a structural model of texture. In Proceedings of PRIP, pages 319-326, 1978. |
[648] | M. Eibauer, C. Hoffmann, J.M. Plitzko, W. Baumeister, S. Nickell, and H. Engelhardt. Unraveling the structure of membrane proteins in situ by transfer function corrected cryo-electron tomography. Journal of Structural Biology, 2012. |
[649] | E.J. Eijlers. Scaling and Texture, Pyramids and Fractals. PhD thesis, Information Theory Group, Department of Electrical Engineering, Delft University of Technology, Delft, 1993. |
[650] | J.J. Einspahr and P.M. Voyles. Prospects for 3D, nanometer-resolution imaging by confocal STEM. Ultramicroscopy, 106:1041-1052, 2006. |
[651] | A. Einstein. Ist die Trägheit eines Körpers von seinem Energieinhalt abhängig? Annalen der Physik, 18:639-641, 1905. |
[652] | A. Einstein. Über die von der molekularkinetischen Theorie der Wärme geforderte Bewegung von in ruhenden Flüssigkeiten suspendierten Teilchen. Annalen der Physik, 17:549-560, 1905. |
[653] | A. Einstein. Zur Elektrodynamik bewegter Körper. Annalen der Physik, 17:891-921, 1905. |
[654] | S. Eisebit, J. Jüning, W.F. Schlotter, M. Lörgen, O. Hellwig, W. Eberhardt, and J. Stöhr. Lensless imaging of magnetic nanostructures by X-ray spectro-holography. Nature, 432:885-888, 2004. |
[655] | H. Eisele. Automatic Defect Detection and Evaluation in X-ray CT Images. PhD thesis, Ruprechts-Karls-Universität University, Heidelberg, Germany, December 2002. |
[656] | A. Eklund, D. Forsberg, M. Andersson, and H. Knutsson. Using the local phase of the magnitude of the local structure tensor for image registration. In A. Heyden and F. Kahl, editors, Image Analysis, Lecture Notes in Computer Science 6688, pages 414-423, Heidelberg, 2011. Springer. |
[657] | H.J. van Elburg, L.C. Kuypers, W.F. Decraemer, and J.J.J. Dirckx. Improved correction of axial geometrical distortion in index-mismatched fluorescent confocal microscopic images using high-aperture objective lenses. Journal of Microscopy, 228(1):45-54, 2007. |
[658] | J. Elder and S. Zucker. Scale space localization, blur and contour-based image coding. In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pages 27-34, San Francisco, USA, 1996. |
[659] | J.H. Elder. Are edges incomplete? International Journal of Computer Vision, 34(2/3):97-122, 1999. |
[660] | J.H. Elder and S.W. Zucker. Local scale control for edge detection and blur estimation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 20(7):699-716, 1998. |
[661] | S.L. Ellenberger. Influence of defocus on measurements in microscope images. Thesis, Technische Universiteit Delft, The Netherlands, 2000. |
[662] | J. Enderlein. Theoretical study of detection of a dipole emitter through an objective with high numerical aperture. Optics Letters, 25(9):634-636, 2000. |
[663] | J. Enderlein, I. Gregor, D. Patra, T. Dertinger, and U.B. Kaupp. Performance of fluorescence correlation spectroscopy for measuring diffusion and concentration. ChemPhysChem, 6:2324-2336, 2005. |
[664] | J. Enderlein, E. Toprak, and P.R. Selvin. Polariztion effect on position accuracy of fluorophore localization. Optics Express, 14(18):8112-8120, 2006. |
[665] | U. Endesfelder, K. Finan, S.J. Holden, P.R. Cook, A.N. Kapanidis, and M. Heilemann. Multiscale spatial organization of RNA polymerase in Escherichia coli. Biophysical Journal, 105, 2013. doi.org/10.1016/j.bpj.2013.05.048. |
[666] | A.L. Endres and R.J. Knight. Incorporating pore geometry and fluid pressure communication into modeling the elastic behavior of porous rocks. Geophysics, 62(1):106-117, January/February 1997. |
[667] | J. Engel, E. Odermatt, A. Engel, J.A. Madri, H. Furthmayr, and H.R. Timpl. Shapes, domain organizations and flexibility of laminin and fibronectin, two multifunctional proteins of the extracellular matrix. Journal of Molecular Biology, 150(1):97-120, 1981. |
[668] | J. Engelhardt, J. Keller, P. Hoyer, M. Reuss, T. Staudt, and S.W. Hell. Molecular orientation affects localization accuracy in superresolution far-field fluorescence microscopy. Nano Letters, 11:209-213, 2010. |
[669] | M. Erdelyi, E. Rees, D. Metcalf, G.S. Kaminski Schierle, L. Dudas, J. Sinko, J. Knight, and C.F. Kaminski. Correcting chromatic offset in multicolor superresolution localization microscopy. Optics Express, 21(9):10978-10988, May 2013. |
[670] | R. Erni. Aberration-Corrected Imaging in Transmission Electron Microscopy. Imperial College Press, London, UK, 2010. |
[671] | R. Erni and N.D. Browning. Valence electron energy-loss spectroscopy in monochromated scanning transmission electron microscopy. Ultramicroscopy, 104:176-192, 2005. |
[672] | R. Erni and N.D. Browning. Quantification of the size-dependent energy gap of individual CdSe quantum dots by valence electron energy-loss spectroscopy. Ultramicroscopy, 107:267-273, 2007. |
[673] | R. Erni, N.D. Browning, Z.R. Dia, and J.P. Bradley. Analysis of extraterrestrial particles using monochromated electron energy-loss spectroscopy. Micron, 36:369-379, 2005. |
[674] | R. Erni, B. Freitag, P. Hartel, H. Müller, P. Tiemeijer, M. van der Stam, M. Stekelenburg, D. Hubert, P. Specht, and V. Garibay-Febles. Atomic scale analysis of planar defects in polycrystalline diamond. Microscopy and Microanalysis, 12:492-497, 2006. |
[675] | R. Erni, S. Lazar, and N.D. Browning. Prospects for analyzing the electronic properties in nanoscale systems by VEELS. Ultramicroscopy, 108:270-276, 2008. |
[676] | R. Erni, M.D. Rossell, C. Kisielowski, and U. Dahmen. Atomic-resolution imaging with sub-50-pm electron probe. Physical Review Letters, 102:096101, 2009. |
[677] | R. Erni, M.D. Rossell, and P.N.H. Nakashima. Optimization of exit-plane waves restored from HRTEM through-focal series. Ultramicroscopy, 110:151-161, 2010. |
[678] | A. Esa, P. Edelmann, G. Kreth, L. Trakhtenbrot, N. Amariglio, G. Rechavi, M. Hausmann, and C. Cremer. Three-dimensional spectral precision distance microscopy of chromatin nanostructures after triple-colour DNA labelling: a study of the BCR region on chromosome 22 and the Philadelphia chromosome. Journal of Microscopy, 199(2):96-105, 2000. |
[679] | D. Eversole, B. Luk'Yanchuk, and A. Ben-Yakar. Plasmonic laser nanoablation of silicon by the scattering of femtosecond pulses near gold nanospheres. Applied Physics A, 89:283-291, 2007. |
[680] | D. Eyidi, C. Hebert, and P. Schattschneider. Short note on parallel illumination in the TEM. Ultramicroscopy, 106:1144-1149, 2006. |
[681] | F.G.A. Faas, M.C. Avramut, B.M. van den Berg, M.A. Mommaas, A.J. Koster, and R.B.G. Ravelli. Virtual nanoscopy: Generation of ultra-large high resolution electron microscopy maps. Journal of Cell Biology, 198(3):457-469, 2012. |
[682] | F.G.A. Faas, M. Barcena, A.V. Agronskaia, H.C. Gerritsen, K.B. Moscicika, C.A. Diebolder, L.F. van Driel, R.W.A.L. Limpens, E. Bos, R.B.G. Ravelli, R.I. Koning, and A.J. Koster. Localization of fluorescently labeled structures in frozen-hydrated samples using integrated light electron microscopy. Journal of Structural Biology, 181:283-290, 2013. |
[683] | F.G.A. Faas, B. Rieger, L.J. van Vliet, and D.I. Cherny. DNA deformations near charged surfaces: electron and atomic force microscopy views. Biophysical Journal, 97(4):1148-1157, 2009. |
[684] | F.G.A. Faas and L.J. van Vliet. 3d-orientation space; filters and sampling. In SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis (Göteborg, Sweden), LNCS 2749, pages 36-42, Berlin, June 29 -July 2 2003. Springer-Verlag. |
[685] | F.G.A. Faas and L.J. van Vliet. A crossing detector based on the structure tensor. In J. Blanc-Talon, editor, LNCS, 4678, pages 212-220, 2007. |
[686] | F.O. Fahrbach, P. Simon, and A. Rohrbach. Microscopy with self-reconstructing beams. Nature photonics, 2010. DOI: 10.1038/NPHOTON.2010.204. |
[687] | G.Y. Fan and M.H. Ellisman. Digital imaging in transmission electron microscopy. Journal of Microscopy, 200(1):1-13, 2000. |
[688] | G.Y. Fan, S.J. Young, T. Deerinck, and M.H. Ellisman. A new electron-optical mode for high contrast imaging and online stereo observation in TEM. Journal of Microscopy, 2(3):137-146, 1996. |
[689] | Hsiu-Fang Fan and Hung-Wen Li. Studying RecBCD helicase translocation along chi-DNA using tethered particle motion with a stretching force. Biophysical Journal, 96(5):1875-1883, 2009. |
[690] | D. Fanelli and O. Öktem. Electron tomography: a short overview with an emphasis on the absorption potential model for the forward problem. Inverse Problems, 24:013001, 2008. |
[691] | G. Farnebäck. Fast and Accurate Motion Estimation using Orientation Tensors and Parametric Motion Models. In Proceedings of 15th International Conference on Pattern Recognition, volume 1, pages 135-139, Barcelona, Spain, September 2000. IAPR. |
[692] | G. Farnebäck. Two-frame motion estimation based on polynomial expansion. In J. Bigün and T. Gustavsson, editors, SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis (Göteborg, Sweden), LNCS 2749, pages 363-370, Berlin, June 29 -July 2 2003. Springer-Verlag. |
[693] | O.D. Faugeras. What can be seen in three dimensions with an uncalibrated stereo rig. In G. Sandini, editor, Second European Conference on Computer Vision, Lecture Notes in Computer Science 588, pages 563-578, Santa Margherita Ligure, Italy, May 1992. Springer. |
[694] | E. Faydi, J. Andrieu, and P. Laurent. Experimental study and modeling of the ice crystal morphology of model standard ice cream. part I: Direct characterization method and experimental data. Journal of Food Engineering, 48:283-291, 2001. |
[695] | E. Faydi, J. Andrieu, P. Laurent, and R. Peczalski. Experimental study and modeling of the ice crystal morphology of model standard ice cream. part II: Heat transfer data and texture modeling. Journal of Food Engineering, 48:293-300, 2001. |
[696] | D. Fellmann, J. Pulokas, R.A. MIlligan, B. Carragher, and C.S. Potter. A relational database for cryoEM: experience at one year and 50000 images. Journal of Structural Biology, 137:273-282, 2002. |
[697] | M. Felsberg and G. Sommer. The multidimensional isotropic generalization of quadrature filters in geometric algebra. In 2nd International Workshop on Algebraic Frames for the Perception-Action Cycle, AFPAC 2000, Kiel, Germany, pages 175-185. Springer Verlag, 2000. |
[698] | M. Felsberg and G. Sommer. Structure multivector for local analysis of images. In Proc. Dagstuhl Workshop on Theoretical Foundations of Computer Vision, 2000. |
[699] | M. Felsberg and G. Sommer. The monogenic signal. IEEE Transactions on Signal Processing, 49(12):3136-3144, 2001. |
[700] | M. Felsberg and G. Sommer. Scale adaptive filtering derived from the Laplace equation. In DAGM Symposium, München, Germany, 2001. extended version. |
[701] | M. Felsberg and G. Sommer. Image features based on a new approach to 2D rotation invariant quadrature filters. In A. Heyden, G. Sparr, M. Nielsen, and P. Johansen, editors, ECCV 2002 (Copenhagen, Denmark), volume 2350 of Lecture Notes in Computer Science, pages 369-383. Springer Verlag, 2002. |
[702] | M. Felsberg and G. Sommer. The monogenic scale-space: A unifying approach to phase-based image processing in scale-space. Journal of Mathematical Imaging and Vision, 21(1):5-26, 2004. |
[703] | T.W. Fens. Petrophysical Properties from Small Rock Samples using Image Analysis Techniques. PhD thesis, Delft University of Technology, Delft, The Netherlands, 2000. |
[704] | J.J. Feranandez, J.R. Sanjurjo, and J.-M. Carazo. A spectral estimation approach to contrast transfer function detection in electron microscopy. Ultramicroscopy, 68:267-295, 1997. |
[705] | L.R. Feret. La grosseur des grains. Assoc. Intern. Essais Math. 2D, Zurich, 1931. |
[706] | J.-J. Fernandez. Computational methods for electron tomography. Micron, 43(10):1010-1030, 2012. |
[707] | J.-J. Fernandez, C.O.S. Sorzano, R. Marabini, and J.-M. Carazo. Strategies for structural determination of biological specimens. IEEE Signal Processing Magazine, 23(3):84-94, 2006. |
[708] | J.J. Fernandez, S. Li, and R.A. Crowther. CTF determination and correction in electron cryotomography. Ultramicroscopy, 106:587-596, 2006. |
[709] | M. Ferraro and T.M. Caelli. Relationship between integral transform invariances and Lie group theory. Journal of the Optical Society of America A, 5(5):738-742, May 1988. |
[710] | G. Ficz, R. Heintzmann, and D.J. Arndt-Jovin. Polycomb group complexes exchange rapidly in living Drosophila. Development, 132(17):3964-3976, 2006. |
[711] | R.D. Finn, E.V. Orlova, B. Gowen, M. Buck, and M. van Heel. Escherichia coli RNA polymerase core and holoenzyme structures. EMBO Journal, 19(24):6833-6844, 2000. |
[712] | L. Finzi and D.D. Dunlap. Single-molecule approaches to probe the structure, kinetics, and thermodynamics of nucleoprotein complexes that regulate transcription. JOURNAL OF BIOLOGICAL CHEMISTRY, 285(25):18973-18978, 2010. |
[713] | L. Finzi and J. Gelles. Measurement of lactose repressor-mediated loop formation and breakdown in single dna molecules. Science, 267(5196):378-380, 1995. |
[714] | B. Fischl and E.L. Schwartz. Adaptive nonlocal filtering: A fast alternative to anisotropic diffusion for image enhancement. IEEE Transactions on Pattern Analysis and Machine Intelligence, VOL. 21(NO. 1), 1999. |
[715] | N.I. Fisher. Statistical Analysis of Circular Data. Cambridge University Press, 1993. |
[716] | J.E. Fitzgerald, J. Lu, and M.J. Schnitzer. Estimation theoretic measure of resolution for stochastic localization microscopy. Physical Review Letters, 109:048102, 2012. |
[717] | R. Fitzhugh. Statistical properties of the asymmetric random telegraph signal, with applications to single-channel analysis. Mathematical Biosciences, 64:75-89, 1983. |
[718] | Marshall Fixman and Richard Alben. Polymer conformational statistics. I. Probability distribution. The Journal of Chemical Physics, 58(4):1553-1558, 1973. |
[719] | D.J. Fleet and A.D. Jepson. Computation of component image velocity from local phase information. International Journal of Computer Vision, 5:77-104, 1990. |
[720] | L.M.J. Florack. The Syntactical Structure of Scalar Images. PhD thesis, University of Utrecht, The Netherlands, 1993. |
[721] | L.M.J. Florack. Image Structure. Kluwer Academic Publishers, 1997. |
[722] | L.M.J. Florack, B.M. ter Haar Romeny, J.J. Koenderink, and M.A. Viergever. Scale and the differential structure of images. Image and Vision Computing, 10(6):376-388, July 1992. |
[723] | L.M.J. Florack, B.M. ter Haar Romeny, J.J. Koenderink, and M.A. Viergever. Linear scale-space. Journal of Mathematical Imaging and Vision, 4(4):325-351, December 1994. |
[724] | L.M.J. Florack, B.M. ter Haar Romeny, M.A. Viergever, and J.J. Koenderink. The Gaussian scale-space paradigm and the multiscale local jet. International Journal of Computer Vision, 18:61-75, 1996. |
[725] | L.M.J. Florack, R. Maas, and W.J. Niessen. Pseudo-linear scale-space theory. International Journal of Computer Vision, 31(2/3):247-259, 1999. |
[726] | L.M.J. Florack, W.J. Niessen, and M. Nielsen. The intrinsic structure of optic flow incorporating measurement duality. International Journal of Computer Vision, 27(3):263-286, 1998. |
[727] | J.D. Foley, A. van Dam, S.K. Feiner, and J.F. Hughes. Computer graphics, principles and practice. Addison-Wesley, London, 2 edition, 1996. |
[728] | J. Fölling, M. Bossi, H. Bock, R. Medda, C.A. Wurm, B. Hein, S. Jacobs, C. Eggeling, and S.W. Hell. Fluorescence nanoscopy by ground-state depletion and single-molecule return. Nature Methods, 5:943-945, 2008. |
[729] | M.R. Foreman, S.S. Sherif, and P. Török. Photon statistics in single molecule orientational imaging. Optics Express, 15(21):13597-13606, 2007. |
[730] | M.R. Foreman and P. Török. Fundamental limits in single-molecule orientation measurements. New Journal of Physics, 13:093013, 2011. |
[731] | G. D. Forney. Viterbi algorithm. Proceedings of the Ieee, 61(3):268-278, 1973. |
[732] | F. Förster, O. Medalia, N. Zauberman, W. Baumeiser, and D. Fass. Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography. Proceedings of the National Academy of Sciences of the United States of America, 102(13):4729-4734, 2005. |
[733] | T. Förster. Zwischenmolekulare Energiewanderung und Fluoreszenz. Annalen der Physik, 2(6):55-75, 1948. |
[734] | W. Förstner and E. Gülch. A fast operator for detection and precise location of distinct points, corners and centres of circular features. In ISPRS Intercommission Workshop (Interlaken), pages 149-155, June 1987. |
[735] | Seth Fraden and Georg Maret. Angular correlations and the isotropic-nematic phase transition in suspensions of tobacco mosaic virus. Physical Review E, 48(4):2816-2838, 1993. |
[736] | J.B. Fraleigh. A First Course in Abstract Algebra. Addison-Wesley, 5th edition, 1994. |
[737] | J. Frank. Computer Processing of Electron Microscope Images, chapter The Role of Correlation Techniques in Computer Image Processing, pages 197-233. Springer Verlag, 1980. |
[738] | J. Frank. Three-Dimensional Electron Microscopy of Macromolecular Assemblies. Oxford University Press, 2 edition, 2006. |
[739] | J. Frank. Single-particle reconstructionof biological macromolecules in electron microscopy - 30 years. Quaterly Reviews of Biophysics, 42(3):139-158, 2009. |
[740] | J. Frank and L. Al-Ali. Signal to noise ratio of electron micrographs obtained by cross correlation. Nature, 256:376-379, 1975. |
[741] | J. Frank, A. Verschoor, and M. Boublik. Computer averaging of electron micrographs of 40s ribosomal subunits. Science, 214, 1981. |
[742] | T. Frankel. The Geometry of Physics. Cambridge University Press, Cambridge, 1997. |
[743] | E.M. Franken, M.A. van Almsick, P.M.J. Rongen, L.M.J. Florack, and B.M. ter Haar Romenij. An efficient method for tensor voting using steerable filters. In LNCS, 3954, pages 228-240, 2006. |
[744] | E.M. Franken, R. Duits, and B.M. ter Haar Romenij. Nonlinear diffusion on the 2d euclidean motion group. In LNCS, 4485, pages 461-472, 2007. |
[745] | J.T. Fredrich. 3d imaging of porous media using laser scanning confocal microscopy with application to microscale transport processes. Physics and Chemistry of the Earth (A), 24(7):551-561, 1999. |
[746] | J.T. Fredrich and W.B. Lindquist. Statistical characterization of the three-dimensional microgeometry of porous media and correlation with macroscopic transport properties. Int. J. Roch Mech. & Min. Sci., 34(3-4):Paper No. 85, 1997. |
[747] | J.T. Fredrich, B. Menéndez, and T.F. Wong. Imaging the pore structure of geomaterials. Science, 268:276-279, April 1995. |
[748] | W.T. Freeman. Steerable Filters and Local Analysis of Image Structure. PhD thesis, Massachusetts Institute of Technology, 1992. |
[749] | W.T. Freeman and E.H. Adelson. The design and use of steerable filters. IEEE Transactions on Pattern Analysis and Machine Intelligence, 13(9):891-906, September 1991. |
[750] | B. Freitag, S. Kujawa, P.M. Mul, J. Ringnalda, and P.C. Tiemeijer. Breaking the spherical and chromatic aberration barrier in transmission electron microscopy. Ultramicroscopy, 102:209-214, 2005. |
[751] | J. Freitag and H. Rose. Resolution and contrast of crystalline objects in high-resolution scanning electron microscopy. Optik, 59:407-429, 1981. |
[752] | Nasser A. Frej and Dennis C. Prieve. Hindered diffusion of a single sphere very near a wall in a nonuniform force field. Journal of Chemical Physics, 98(9):7552-7564, 1993. |
[753] | J.W.M. Frenken, L. Kuipers, and J.B. Sanders. Thermal roughening investigated by scanning tunnelling microscopy. Faraday Discussions, 95:27-36, 1993. |
[754] | D.L. Fried. Noise in photoemission current. Applied Optics, 4(1):79-80, 1965. |
[755] | H. Friedrich, M.R. McCartney, and P.R. Buseck. Comparison of intensity distributions in tomograms from BF TEM, ADF TEM, HAADF STEM, and calculated tilt series. Ultramicroscopy, 106:18-27, 2005. |
[756] | J. Froment. A compact and multiscale image model based on level sets. In Scale-Space Theories in Computer Vision, Lecture Notes in Computer Science, pages 152-163. Springer Verlag, 1999. |
[757] | C. Frontali. Excluded-volume effect on the bidimensional conformation of DNA molecules adsorbed to protein films. Biopolymers, 27(8):1329-1331, 1988. |
[758] | C. Frontali, E. Dore, A. Ferrauto, E. Gratton, A. Bettini, M.R. Pozzan, and E. Valdevit. An absolute method for the determination of the persistence length of native DNA from electron micrographs. Biopolymers, 18(6):1353-1373, 1979. |
[759] | J. Fu, A.L. Gnatt, D.A. Bushnell, G.J. Jensen, N.E. Thompson, R.R. Burgess, P.R. David, and R.D. Kornberg. Yeast RNA polymerase II at 5å resolution. Cell, 98:799-810, 1999. |
[760] | K. Fujita, M. Kobayashi, S. Kawano, M. YTamanaka, and S. Kawata. High-resolution confocal microscopy by saturated excitation of fluorescence. Physical Review Letters, 99:228105, 2007. |
[761] | S. Fujita and H. Shimoyama. A new evaluation method of electron optical performance of high beam current probe forming systems. Journal of Electron Mircoscopy, 54(5):413-427, 2005. |
[762] | Y. Fujiyoshi. The structural study of membranse proteins by electron crystallography. Adv. Biophysics, 35:25-80, 1998. |
[763] | T. Fukano, H. Hama, and A. Miyawaki. Similar diffusibility of membrane proteins across the axon-soma and dendrite-soma boundaries revealed by a novel FRAP technique. Journal of Structural Biology, 147:12-18, 2004. |
[764] | T. Fukano and A. Miyawaki. Whole-field fluorescence microscope with digital micromirror device: Imaging of biological samples. Applied Optics, 42(19):4119-4124, 2003. |
[765] | K. Fukunaga. Introduction to Statistical Pattern Recognition. Academic Press, New York, 1972. |
[766] | M. Funaro, E. Oja, and H. Valpula. Independent component analysis for artefact separation in astrophysical images. Neural Networks, 16(4):469-478, 2003. |
[767] | S. Fürhapter, A. Jesacher, S. Bernet, and M. Ritsch-Marte. Spiral interferometry. Optics Letters, 30(15):1953-1955, 2005. |
[768] | I.S. Gabashvili, R.K. Agrawal, C.M.T. Spahn, R.A. Gracssucci, D.I. Svergun, J. Frank, and P. Penczek. Solution structure of the E. coli 70S ribosome at 11.5å resolution. Cell, 100:537-549, 2000. |
[769] | D. Gabor. Theory of communication: Part i: Analysis of information. Journal of the Institution of Electrical Engineers, 93(26):429-441, November 1946. |
[770] | D. Gabor. Theory of communication: Part ii: The analysis of hearing. Journal of the Institution of Electrical Engineers, 93:442-445, 1946. |
[771] | D. Gabor. Theory of communication: Part iii: Frequency compression and expansion. Journal of the Institution of Electrical Engineers, 93:445-457, 1946. |
[772] | T.W.J. jr. Gadella, R.M. Clegg, and T.M. Jovin. Fluorescence lifetime imaging microscopy: Pixel-by-pixel analysis of phase-modulation data. Bioimaging, 2(3):139-159, 1994. |
[773] | T.W.J. jr. Gadella and T.M. Jovin. Oligomerization of epidermal growth factor receptors on A431 cells studied by time-resolved fluorescence imaging microscopy. A stereochemical model for tyrosine kinase receptor activation. Journal of Cell Biology, 129(6):1543-1558, 1995. |
[774] | T.W.J. jr. Gadella and T.M. Jovin. Fast algorithms for the analysis of single and double exponential decay curves with a background term. application to time-resolved imaging microscopy. Bioimaging, 5(1):19-39, 1997. |
[775] | Roberto Galletto, Ichiro Amitani, Ronald J. Baskin, and Stephen C. Kowalczykowski. Direct observation of individual RecA filaments assembling on single DNA molecules. Nature, 443(7113):875-878, 2006. |
[776] | E.J. Garboczi, K.A. Snyder, J.F. Douglas, and M.F. Thorpe. Geometrical percolation threshold of overlapping ellipsoids. Physical Review E, 52(1), July 1995. |
[777] | Y. Garini, G.I. Bar-Am, D. Cabib, and N. Katzir. Signal to noise analysis of multiple color fluorescence imaging microscopy. Cytometry, 35(3):214-226, 1999. |
[778] | Y. Garini, B.J. Vermolen, and I.T. Young. From micro to nano: recent advances in high-resolution microscopy. Current Opinion in Biotechnology, 16(1):3-12, 2005. |
[779] | L.P. Gaspar, J.E. Johnson, J.L. Silva, and A.T. da Poian. Partially folded states of the capsid protein of cowpea severe mosaic virus in the disassembly pathway. Journal of Molecular Biology, 273:456-466, 1997. |
[780] | D. Gatica-Perez, C. Gu, M.-T. Sun, and S. Ruiz-Correa. Extensive partition operators, gray-level connected operators, and region merging/classification segmentation algorithms: theoretical links. IEEE Transactions on Image Processing, 10(9):1332 -1345, 2001. |
[781] | J.M. Gauch and S.M. Pizer. The intensity axis of symmetry and its application to image segmentation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 15(8):753-770, August 1993. |
[782] | J.M. Gauch and S.M. Pizer. Multiresolution analysis of ridges and valleys in grey-scale images. IEEE Transactions on Pattern Analysis and Machine Analysis, 15(6):635-646, June 1993. |
[783] | C.F. Gauss. Disquisitiones Arithmeticae. Königlichen Gesellschaft der Wissenschaft, Göttingen, 1801. |
[784] | I. Gautier, C. Tramier, J. Coppey, R.B. Pansu, J-C. Nicolas, K. Kemnitz, and M. Coppey-Moisan. Homo-FRET microscopy in living cells to measure monomer-dimer transition of GFP-tagged proteins. Biophysical Journal, 80(6):3000-3008, 2001. |
[785] | Stephanie Geggier and Alexander Vologodskii. Sequence dependence of DNA bending rigidity. Proceedings of the National Academy of Sciences of the USA, 107(35):15421-15426, 2010. |
[786] | C. Geisler, A. Schonle, C. von Middendorff, H. Bock, C. Eggeling, A. Egner, and S. W. Hell. Resolution of lambda/10 in fluorescence microscopy using fast single molecule photo-switching. Applied Physics A - Materials Science and Processing, 88(2):223-226, 2007. |
[787] | S. Geissbuehler, N.L. Bocchio, C. Dellagiacoma, C. Berclaz, M. Letenegger, and T. Lasser. Mapping molecular statistics with balanced super-resolution optical fluctuation imaging (bSOFI). Optical Nanoscopy, 1(4), 2012. |
[788] | S. Geissbuehler, C. Dellagiacoma, and T. Lasser. Comparison between SOFI and STORM. BIOMEDICAL OPTICS EXPRESS, 2(3):408-420, 2011. |
[789] | I.M. Gel'fand, M.I. Graev, and N.Ya. Vilenkin. Generalized Functions. Volume 5, Integral Geometry and Representation Theory. Academic Press, 1966. |
[790] | I.M. Gel'fand and G.E. Shilov. Generalized Functions. Volume 1, Properties and Operations. Academic Press, 1964. |
[791] | Jeff Gelles, Bruce J. Schnapp, and Michael P. Sheetz. Tracking kinesin-driven movements with nanometric-scale precision. Nature, 331(6155):450-453, 1988. |
[792] | S. Geman and D. Geman. Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Transactions on Pattern Analysis and Machine Intelligence, 6(6):721-741, November 1984. |
[793] | M.J. Gemkow, J. Dichter, and D.J. Ardent-Jovin. Develpoment regulation of DNA-topoisomerases during drosophila embryogenesis. Experimental Cell Research, 262:114-121, 2001. |
[794] | A. Genc, L. Kovarik, M. Gu, H. Cheng, P. Plachinda, L. Pullan, B. Freitag, and C. Wang. Xeds stem tomography for 3d chemical characterization of nano scale particles. Ultramicroscopy, 131:24-32, 2013. |
[795] | A. Genovesio, T. Liedl, V. Emiliani, W.J. Parak, M. Coppey-Moisan, and J.-C. Olivo-Marin. Tracking in 3-D+t microscopy: Method and application to the tracking of endocytosed quantum dots. IEEE Transactions on Image Processing, 15(5):1062-1070, 2006. |
[796] | W.G.M. Geraets. Computer Aided Analysis of the Radiographic Trabecular Pattern. PhD thesis, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands, 1994. |
[797] | W.G.M. Geraets, P.F. van der Stelt, P. Lips, and F.C. van Ginkel. The radiographic trabecular pattern of hips in patients with hip fractures and in elderly control subjects. Bone, 22(2):165-173, 1998. |
[798] | R.W. Gerchberg. Super-resolution through error energy reduction. Optica Acta, 21(9):709-720, 1974. |
[799] | R.W. Gerchberg and W.O. Saxton. A practical algorithm for the determination of phase from image and diffraction plane pictures. Optik, 35(2):237-246, 1972. |
[800] | G. Gerig, O. Kübler, R. Kikinis, and F.A. Jolesz. Nonlinear anisotropic filtering of MRI data. IEEE Transactions on Medical Imaging, 11(2):221-232, June 1992. |
[801] | D. Gerlich, J. Beaudouin, M. Gebhard, J. Ellenberg, and R. Eils. Four-dimensional imaging and quantitative reconstruction to analyse complex spatiotemporal processes in living cells. Nature Cell Biology, 9:852-855, 2001. |
[802] | D. Gerlich, J. Mattes, and R. Eils. Quantitative motion analysis and visualization of cellular structures. Methods, 29:3-13, 2003. |
[803] | J.M. Geusebroek, F. Cornelissen, A.W.M. Smeulders, and H. Geerts. Robust autofocusing in microscopy. Cytometry, 39(1):1-9, 2000. |
[804] | J.M. Geusebroek, A.W.M. Smeulders, and J. van de Weijer. Fast anisotropic Gauss filtering. In A. Heyden, editor, Proceedings of the ECCV 2002, volume 2350 of Lecture Notes in Computer Science, pages 99-112. Springer-Verlag, 2002. |
[805] | J.M. Geusebroek, A.W.M. Smeulders, and J. van de Weijer. Fast anisotropic gauss filtering. IEEE Transactions on Image Processing, 12(8):938-943, 2003. |
[806] | R.N. Ghosh and W.W. Webb. Automated detection and tracking of individual and clustered cell surface low density lipoprotein receptor molecules. Biophysical Journal, 66(5):1301-1318, May 1994. |
[807] | P.C. Gibbons, J.J. Ritsko, and S.E. Schnatterly. Inelastic electron scattering spectrometer. Review of Scientific Intstruments, 46(11):1546-1554, 1975. |
[808] | Sarah Frisken Gibson and Frederick Lanni. Diffraction by a Circular Aperture as a Model for Three-Dimensional Microscopy. Journal of the Optical Society of America A, 6(9):1357-1367, 1989. |
[809] | Sarah Frisken Gibson and Frederick Lanni. Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy. Journal of the Optical Society of America A, 8(10):1601-1613, 1991. |
[810] | B.N.G. Giepmans, T.J. Deerinck, B.L. Smarr, Y.Z. Jones, and M.H. Ellisman. Correlated light and electron microscopic imaging of multiple endogenous proteins using quantum dots. Nature Methods, 10:743-749, 2005. |
[811] | J. Gil and M. Werman. Computing 2-D min, median, and max filters. IEEE Transactions on Pattern Analysis and Machine Intelligence, 15(5):504-507, May 1993. |
[812] | P. Gilbert. Iterative methods for the three-dimensional reconstruction of a object from projections. Journal of Theoretical Biology, 36(1):105-117, 1972. |
[813] | A. M. Gilfillan and C. Tkaczyk. Integrated signalling pathways for mast-cell activation. Nat Rev Immunol, 6(3):218-30, 2006. |
[814] | W. Gilles. Universal computer program for seeking of a collision free path for an industrial robot. In Proceedings of the 15th ISIR Conference (Tokyo), 1985. |
[815] | M. van Ginkel. Diffusion generated scale-space for blob analysis. Master's thesis, Delft University of Technology, Delft, The Netherlands, August 1995. |
[816] |
M. van Ginkel.
Image Analysis using Orientation Space based on Steerable
Filters.
PhD thesis, Delft University of Technology, Delft, The Netherlands,
2002.
digital version available: http://www.ph.tn.tudelft.nl/PHDTheses/MvGinkel/thesis_vanginkel.html. |
[817] | M. van Ginkel. Image Analysis using Orientation Space based on Steerable Filters. PhD thesis, Delft University of Technology, Delft, The Netherlands, 2002. |
[818] | M. van Ginkel, G.M.P. van Kempen, C.L. Luengo Hendriks, B. Rieger, and L.J. van Vliet. DIPlib: a scientific image processing library, 1995-. Pattern Recognition Group, Department of Applied Physics, Delft University of Technology, http://www.qi.tnw.tudelft.nl/DIPlib. |
[819] | M. van Ginkel, M.A. Kraaijveld, L.J. van Vliet, E.P. Reding, P.W. Verbeek, and H.J. Lammers. Robust curve detection using a Radon transform in orientation space. In J. Bigün and T. Gustavsson, editors, Proceedings of the 13th Scandinavian Conference on Image Analysis, Lecture Notes in Computer Science 2749, pages 125-132. Springer, June 29-July 2 2003. |
[820] | M. van Ginkel, C.L. Luengo Hendriks, and L.J. van Vliet. An short introduction to the radon and hough transforms and how they relate to each other. Technical report, Pattern Recognition Group, Delft University of Technology, December 2003. Technical Report PH-2003-03. |
[821] | M. van Ginkel, P.W. Verbeek, and L.J. van Vliet. Multi-orientation estimation: Selectivity and localization. In H.E. Bal, H. Corporaal, P.P. Jonker, and J.F.M. Tonino, editors, Proceedings of the 3rd Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands), pages 99-105, June 2-4 1997. |
[822] | M. van Ginkel, P.W. Verbeek, and L.J. van Vliet. Curvature estimation for overlapping curved patterns using orientation space. In B. ter Haar Romeny, D.H.J. Epema, and J.F.M. Tonino, editors, Proceedings of the third annual conference of the Advanced School for Computing and Imaging (Lommel, Belgium), pages 173-178, June 9-11 1998. |
[823] | M. van Ginkel, P.W. Verbeek, and L.J. van Vliet. Orientation selectivity for orientation estimation. In Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland), volume I, pages 533-537, June 9-11 1997. |
[824] | M. van Ginkel, L.J. van Vliet, and P.W. Verbeek. Robust curvature estimation by finding optimal circular segments in orientation space. In L.J. van Vliet, J.W.K. Heijnsdijk, T. Kielmann, and P.M.W. Knijnenburg, editors, ASCI2000, Proc. 6th Annual Conference of the Advanced School for Computing and Imaging (Lommel, Belgium), pages 299-306. ASCI, Delft, June 14-16 2000. |
[825] | M. van Ginkel, L.J. van Vliet, and P.W. Verbeek. Applications of image analysis in orientation space. In A.M. Vossepoel and F.M. Vos, editors, Fourth Quinqennial Review 1996-2001 of the Dutch Society for Pattern Recognition and Image Processing, pages 365-380. 2001. |
[826] | M. van Ginkel, L.J. van Vliet, P.W. Verbeek, M.A. Kraaijveld, and E.P. Reding. Robust curve detection using a radon transform in orientation space applied to fracture detection in borehole images. In R.L. Lagendijk, J.W.J. Heijnsdijk, A.D. Pimentel, and M.H.F. Wilkinson, editors, ASCI2001, Proc. 7th Annual Conference of the Advanced School for Computing and Imaging (Heijen, the Netherlands), pages 84-91. ASCI, Delft, May 30-June 1 2001. |
[827] | M. van Ginkel, J. van de Weijer, P.W. Verbeek, and L.J. van Vliet. Curvature estimation from orientation fields. In B.K. Ersboll and P. Johansen, editors, SCIA'99, Proc. 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland), pages 545-551. Pattern Recognition Society of Denmark, Lyngby, June 7-11 1999. |
[828] | M. van Ginkel, J. van de Weijer, P.W. Verbeek, and L.J. van Vliet. Curvature estimation from orientation fields. In B.K. Ersboll and P. Johansen, editors, SCIA'99, pages 545-551. Pattern Recognition Society of Denmark, 1999. |
[829] | B. van Ginneken and B. M. ter Haar Romeny. Applications of locally orderless images. In Mads Nielsen, Peter Johansen, Ole F. Olsen, and Joachim Weickert, editors, Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece), volume 1682 of Lecture Notes on Computer Science, pages 10-21. Springer-Verlag. |
[830] | B. van Ginneken and B.M. ter Haar Romeny. Applications of locally orderless images. Journal of Visual Communication and Image Representation, 11(2):196-208, 2000. |
[831] | L. Giordano, T.M. Jovin, M. Irie, and E.A. Jare-Erijman. Diheteroarylethenes as thermally stable photoswitchable acceptors in photochromic fluorescence resonance energy transfer (pcFRET). Journal of the American Chemical Society, 124:7481-7489, 2002. |
[832] | B. Gipson, X. Zeng, Z.Y. Zhang, and H. Stahlberg. 2dx - user-friendly image processing for 2d crystals. Journal of Strcutural Biology, 157:64-72, 2007. |
[833] | C.O. Girit, J.C. Meyer, M.D. Erni, R.and Rossel, C. Kisielowski, Li. Yang, C.-H. Park, M.F. Crommie, M.L. Cohen, S.G. Louie, and A. Zettl. Graphene at the edge: Stability and dynamics. Science, 323:1705-1707, 2009. |
[834] | A. Giro, A. Bergia, G. Zuccheri, H.H.J. Bink, C.W.A. Pleij, and B. Samori. Single molecule studies of RNA secondary structure: AFM of TYMV viral RNA. Microscopy Research and Technique, 65(4):235-245, 2004. |
[835] | F. Gittes, J. Mickey, B. Nettleton, and J. Howard. Flexural rigidity of microtubules and actin filaments measured from thermal fluctuations in shape. Journal of Cell Biology, 120(4):923-934, November 1993. |
[836] | R.M. Glaeser and K.H. Downing. Specimen charging on thin films with one conducting layer: discussion of physical principles. Microscopy and Microanalysis, 10:790-796, 2004. |
[837] | M. van der Glas, F.M. Vos, and A.M. Vossepoel. Assessment of center of rotation of the glenohumeral joint by a modified Hough transform. In W.J. Niessen and M.A. Viergever, editors, 4th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001, Utrecht, The Netherlands, volume 2208 of Lecture Notes on Computer Science, 2001. |
[838] | M. van der Glas, F.M. Vos, and A.M. Vossepoel. Assessment of center of rotation of the glenohumeral joint by a modified Hough transform. volume 2208 of Lecture Notes on Computer Science, 2001. |
[839] | K. Glossop, P.J.G. Lisboa, P.C. Russell, A. Siddans, and G.R. Jones. An implementation of the hough transformation for the identification and labeling of fixed period sinusoidal curves. Computer Vision and Image Understanding, 74(1):96-100, April 1999. |
[840] | William Gobush, Hiromi Yamakawa, W. H. Stockmayer, and W. S. Magee. Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior. The Journal of Chemical Physics, 57(7):2839-2843, 1972. |
[841] | V. Goetcherian. From binary to grey tone image processing using fuzzy logic concepts. Pattern Recognition, 12:7-15, 1980. |
[842] | M. Gökstorp. Depth Computation in Robot Vision. PhD thesis, Linköping University, Linköping, Sweden, 1995. |
[843] | D. Goldberg. What every computer scientist should know about floating-point arithmetic. ACM Computing Surveys, 23(1):5-48, 1991. |
[844] | D. Goldberg. What every computer scientist should know about floating-point arithmetic. ACM Computing Surveys, 23(1):5-48, 1991. A reprint. Extended? |
[845] | L. Goldfarb. A unified approach to pattern recognition. Pattern Recognition, 17(5):575-582, 1984. |
[846] | L. Goldfarb. Metric data models and associative memories. In IASTED/AFCET International Symposium on Robotics and Artificial Intelligence, University Paul Sabatier, Toulouse, volume 3, pages 53-73, 1986. |
[847] | A.J. Goldman, R.G. Cox, and H. Brenner. Slow viscous motion of a sphere parallel to a plane wall - I Motion through a quiescent fluid. Chemical Engineering Science, 22(4):637-651, 1967. |
[848] | E. Goldmann. A new window on the cell's inner workings. Science, 298:1155-1156, 2002. |
[849] | G.N. Gol'tsman, O. Okunev, G. Chulkova, A. Lipatov, A. Semenov, K. Smirnov, B. Voronov, A. Dzardanov, C. Williams, and R. Sobolewski. Picosecond superconduction single-photon optical detector. Applied Physics Letters, 79(6):705-707, 2001. |
[850] | G.H. Golub and C.F. van Loan. Matrix Computations. John Hopkins University Press, Baltimore, 3 edition, 1996. |
[851] | T. Gonen, P. Sliz, J. Kistler, Y. Cheng, and T. Walz. Aquaporin-o membrane junctions reveal the structure of a closed water pore. Nature, 429:193-196, 2004. |
[852] | I.J. Good. The interaction algorithm and practical Fourier analysis. J. Roy. Statist. Soc. Ser. B, B. 20:361-372, 1958. Addendum in vol B. 22, 1960, pp. 372-375. |
[853] | I.J. Good. The relationship between two fast Fourier transforms. IEEE Transactions on Computers, C-20(3):310-317, March 1971. |
[854] | A. Gopinath, G. Xu, D. Ress, O. Öktem, S. Subramaniam, and C. Baja. Shape-based regularization of electron tomographic reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING, 31(12):2241-2253, 2012. |
[855] | M.P. Gordon, T. Ha, and P.R. Selvin. Single-molecule high-resolution imaging with photobleaching. Proceedings of the National Academy of Sciences of the United States of America, 101(17):6462-6465, 2004. |
[856] | A. Goshtasby. On edge focusing. Image and Vision Computing, 12(4):247-256, May 1994. |
[857] | T.J. Gould, D. Burke, J. Bewersdorf, and M.J. Booth. Adaptive optics enables 3D STED microscopy in aberrating specimens. Optics Express, 20(19):20998-21009, 2012. |
[858] | T.J. Gould, M.S. Gunewardene, M.V. Gudheti, V.V. Verkhusha, S.-R. Yin, J.A. Gosse, and S.T. Hess. Nanoscale imaging of molecular positions and anisotropies. Nature Methods, 5(12):1027-1031, 2008. |
[859] | J. Goutsias. Markov random fields: Interacting particle systems for statistical image modeling and analysis. Technical report, Department of Electrical and Computer Engineering, The Johns Hopkins University, USA, 1996. |
[860] | John Goutsias and Henk J.A.M. Heijmans. Fundamenta morphologicae mathematicae. Fundamenta Informaticae, 41:1-31, 2000. |
[861] | A. Gove, S. Grossberg, and E. Mingolla. Brightness perception, illusory contours, and corticogeniculate feedback. Visual Neuroscience, 12(6):1027-1052, 1995. |
[862] | M. Grabenbauer, W.J. Geerts, J. Fernadez-Rodriguez, A. Hoenger, A.J. Koster, and T. Nilsson. Correlative microscopy and electron tomography of gfp through photooxidation. Nature Methods, 2:857-862, 2005. |
[863] | Mason Graff and A. Bruno Frazier. Resonance Light Scattering (RLS) Detection of Nanoparticle Separations in a Microelectrical Field-Flow Fractionation System. IEEE Transactions on Nanotechnology, 5(1):8-13, 2006. |
[864] | D.J. Graham, P. Magdalinos, and D. Pimentel. Detergent foam images as analogue/digital model fluids. 2. investigation of neighborship partition of the radial distribution function. Journal of Physical Chemistry B, 101:11212-11220, 1997. |
[865] | C. Gramkov. On averaging rotations. Journal of Mathematical Imaging and Vision, 15:7-16, 2001. |
[866] | G.H. Granlund. In search of a general picture processing operator. Computer Graphics and Image Processing, 8:155-173, 1978. |
[867] | G.H. Granlund. From multidimensional signals to the generation of responses. In G. Sommer and J.J. Koenderink, editors, Algebraic Frames for the Perception-Action Cycle (AFPAC 1997), volume 1315 of Lecture Notes on Computer Science, Kiel, Germany, 1997. Springer-Verlag. |
[868] | G.H. Granlund. An associative perception-action structure using a localized space variant information representation. In Proceedings of Algebraic Frames for the Perception-Action Cycle (AFPAC), Kiel, Germany, September 10-11 2000. |
[869] | G.H. Granlund and H. Knutsson. Signal processing for computer vision. Kluwer Academic Publishers, Boston/Dordrecht/London, 1995. |
[870] | A. Gray. Modern Differential Geometry of Curves and Surfaces. CRC Press, Florida, 1994. |
[871] | M. Grayson. The heat equation shrinks embedded plane curves to round points. Journal of Differential Geometry, 26:285-314, 1987. |
[872] | H. Grecco, K.A. Lidke, R. Heintzmann, D.S. Lidke, C. Spagnuolo, O.E. Martinez, E.A. Jares-Erijman, and T.M. Jovin. Ensemble and single particle photophysical properties (two-photon excitation, anisotropy, FRET, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells. Microscopy Research and Technique, 65(3):169-179, 2004. |
[873] | H. E. Grecco, K. A. Lidke, R. Heintzmann, D. S. Lidke, C. Spagnuolo, O. E. Martinez, E. A. Jares-Erijman, and T. M. Jovin. Ensemble and single particle photophysical proper-ties (two-photon excitation, anisotropy, fret, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells. Microscopy Research and Technique, 65(4-5):169-179, 2004. |
[874] | H. Greenspan, M. Porat, and Y.Y. Zeevi. Projection-based approach to image analysis: Pattern recognition and representation in the position-orientation space. IEEE Transactions on Pattern Analysis and Machine Intelligence, 14(11):1105-1110, November 1992. |
[875] | W. Greiner, L. Neise, and H. Stöcker. Theoretische Physik, Thermodynamik und statische Mechanik. Verlag Harri Deutsch, Frankfurt, 2 edition, 1993. |
[876] | L.D. Griffin. Scale-imprecision space. Image and Vision Computing, 15(5):369-398, 1997. |
[877] | A.K. Griffith. Edge detection in simple scenes using a priori information. IEEE Transactions on Computers, 22(4):371-381, April 1973. |
[878] | E.R. Griffs, S. Xu, and M.A. Powers. Nup98 localizes to both nuclear and cytoplasmic sides of the nuclear pore and binds to two distinct nucleoporin subcomplexes. Molecular Biology of the Cell, 14:600-610, 2003. |
[879] | N. Grigorieff. Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22Å in ice. Journal of Molecular Biology, 277:1033-1046, 1998. |
[880] | N. Grigorieff, T.A. Ceska, K.H. Downing, J.M. Baldwin, and R. Henderson. Electron-crystallographic refinement of the structure of bacteriorhopdopsin. Journal of Molecular Biology, 259:393-421, 1996. |
[881] | V. Grillo and E. Carlino. A novel method for focus assessment in atomic resolution STEM HAADF experiments. Ultramicrosocpy, 106:603-613, 2006. |
[882] | P. Grivet. Electron Optics. Pergamon Press, London, 1965. Copy Peter Tiemeijer. |
[883] | A. Grossman and J. Morlet. Decomposition of Hardy functions into square integrable wavelets of constant shape. SIAM Journal on Mathematical Analysis, 15(4):723-736, July 1984. |
[884] | A. Grossmann and J. Morlet. Decomposition of Hardy functions into square integrable wavelets of constant shape. SIAM Journal of Mathematics, 15:723-736, 1984. |
[885] | T. Grotjohann, I. Testa, M. Reuss, T. Brakemann, C. Eggeling, S.W. Hell, and S. Jakobs. rsEGFP2 enables fast RESOLFT nanoscopy of living cells. eLIFE, 1:e00248, 2012. |
[886] | T. Grotjohann, T. Testa, M. Leutenegger, H. Bock, N.T. Urban, F. Lavoie-Cardinal, K.I. Willig, C. Eggeling, and S.W. Hell. Diffraction-unlimited all-optical imaging and writing with a photochromic GFP. Nature, 478:204-208, 2011. |
[887] | G. Grover, S.R.P. Pavani, and R. Piestun. Performance limits on three-dimensional particle localization in photon-limited microscopy. Optics letters, 35(19):3306-3308, October 2010. |
[888] | K. Grünewald, P. Desai, D.C. Winkler, J.B. Heymann, D. Belnap, W. Baumeister, and A.C. Steven. Three-dimensional structure of herpes simplex virus from cryo-electron tomography. Science, 302:1396-1398, 2003. |
[889] | K. Grünewald, O. Medalia, A. Gross, A.C. Steven, and W. Baumeister. Prospects of electron cryotomography to visualize macromolecular complexes inside cellular compartments: implications of crowding. Biophysical Chemistry, 100:577-591, 2003. |
[890] | D. Grünwald and R.H. Singer. In vivo imaging of labelled endogenous b-actin mRNA during nucleocytoplasmic transport. Nature, 467:604-609, 2010. |
[891] | D. Grünwald, R.H. Singer, and M. Rout. Nuclear export dynamics of RNA-protein complexes. Nature, 475:333-341, 2011. |
[892] | I. Gryczynski, H. Malak, and J.R. Lakowicz. Three-photon induced fluorescence of 2,5-diphenyloxazole with a femtosecond Ti:sapphire laser. Chemical Physics Letters, 245(1):30-35, 1995. |
[893] | L. Gu, V. Srot, W. Sigle, C. Koch, P. van Aken, F. Scholz, S.B. Thapa, C. Kirchner, M. Jetter, and M. Ruehle. Band-gap measurements of direct and indirect semiconductors using monochromated electrons. Physical Review B, 75:195214, 2007. |
[894] | Y. Gu, Z.H. Zhou, D.B. McCarthy, L.J. Reed, and J.K. Stoops. 3d electron microscopy reveals the variables deposition and protein dynamics of the peripheral pyruvate dehydrogenase component about the core. Proceedings of the National Academy of Sciences of the United States of America, 100(23):7015-7020, 2003. |
[895] | Jeffrey S. Guasto. Micro- and Nano-scale Colloidal Dynamics Near Surfaces. PhD thesis, Brown University, 2008. |
[896] | A. Gubbens, M. Barfels, C. Trevor, R. Twesten, P. Mooney, P. Thomas, N. Menon, B. Kraus, C. Mao, and B. Mcginn. The gif quantum, a next generation post-column imaging energy filter. Ultramicroscopy, 2010. |
[897] | A. Guessoum and R.M. Merserau. Fast algorithms for the multidimensional discrete Fourier transform. IEEE Transactions on Acoustics, Speech and Signal Processing, 34(4):937-943, August 1986. |
[898] | L. Gui and W. Merzkirch. A comparative study of the mqd method and several correlation-based piv evaluation algorithms. Experiments in Fluids, 28(1):36-44, 2000. |
[899] | S. Gull, A. Lasenby, and C. Doran. Imaginary numbers are not real - the geometric algebra of spacetime. Found. Phys., 23:1775, 1993. |
[900] | L. Gunawan, S. Lazar, O. Gautreau, C. Narnagea, A. Pignolet, and G.A. Botton. Locating la atoms in epitaxial bi3.25la0.75ti3o12 films through atomic resolution electron energy loss spectroscopy mapping. Applied Physics Letters, 95:192902, 2009. |
[901] | M.S. Gunewardene, F.V. Subach, T.J. Gould, G.P. Penoncello, M.V. Gudheti, V.V. Verkhusha, and S.T. Hess. Superresolution imaging of multiple fluorescent proteins with highly overlapping emission spectra in living cells. Biophysical Journal, 101:1522-1528, 2011. |
[902] | Anshu M. Gupta and Sam F. Edwards. Mean-field theory of phase transitions in liquid-crystalline polymers. Journal of Chemical Physics, 98(2):1588-1596, 1993. |
[903] | M. G. L. Gustafsson. Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution. Proceedings of the National Academy of Sciences of the United States of America, 102(37):13081-13086, 2005. |
[904] | M.G.L. Gustafsson. Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. Journal of Microscopy, 198(2):82-87, 2000. |
[905] | M.G.L. Gustafsson, D.A. Agard, and J.W. Sedat. I5M: 3D widefield light microscopy with better than 100 nm axial resolution. Journal of Microscopy, 195(1):10-16, 1999. |
[906] | N. Gyobu, K. Tani, Y. Hiroaki, A. Kamegawa, K. Mitsuoka, and Y. Fujiyoshi. Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique. Journal of Structural Biology, 146:325-333, 2004. |
[907] | B.-Y. Ha and D. Thirumalai. A mean-field model for semiflexible chains. Journal of Chemical Physics, 103(21):9408-9412, 1995. |
[908] | T. Ha, J. Glass, T. Enderle, D.S. Chemla, and S. Weiss. Hindered rotational diffusion and rotational jumps of single molecules. Physical Review Letters, 80(10):2093-2096, 1998. |
[909] | D. M. Haaland, J. A. Timlin, M. B. Sinclair, M. H. Van Benthem, M. J. Martinez, A. D. Aragon, and M. Werner-Washburne. Multivariate curve resolution for hyperspectral image analysis: applications to microarray technology, volume 4959 of In Spectral Imaging: Instrumentation, Applications, and Analysis. International Society for Optical Engineering, San Jose, CA., 2003. |
[910] | B.M. ter Haar Romeny, L.M.J. Florack, A.H. Salden, and M.A. Viergever. Higher order differential structure of images. Image and Vision Computing, 12(6):317-325, 1994. |
[911] | F. de Haas, A.O. Paatero, L. Mindich, D.H. Bamford, and S.D. Fuller. A symmetry mismatch at the site of RNA packaging in the polymerase complex of dsRNA bacteriophage φ6. Journal of Molecular Biology, 294:357-372, 1999. |
[912] | H. Hadwiger. Vorlesungen über Inhalt, Oberfläche und Isoperimetrie. Springer-Verlag, Berlin, 1957. |
[913] | O. Haeberlé, M. Ammar, H. Furukawa, K. Tenjimbayashi, and P. Török. Point spread function of optical microscopes imaging through stratified media. Optics Express, 11(22):2964-2969, 2003. |
[914] | G.M. Hagen, K.A. Lidke, B. Rieger, D.S. Lidke, W. Caarls, D.J. Arndt-Jovin, and T.M. Jovin. Single Molecule Dynamics in Life Sciences, chapter Dynamics of membrane receptors: single molecule tracking of quantm dot liganded epidermal growth factor, pages 117-130. Wiley, 2008. |
[915] | P.J. Hagerman. Flexibility of DNA. Annual Review of Biophysics and BioEngineering, 17:265-286, 1988. |
[916] | L. Haglund. Adaptive Multidimensional Filtering. PhD thesis, Linköping University, Linköping, Sweden, 1992. |
[917] | L. Haglund, H. Knutsson, and G.H. Granlund. Scale and orientation adaptive filtering. In Proceedings of the 8th Scandinavian Conference on Image Analysis, pages 847-855, Tromsø, Norway, May 1993. |
[918] | M. Haider, H. Mueller, and S. Uhlemann. Present and future hexapole aberration correctors for high-resolution electron microscopy. Advances in Imaging and Electron Physics, 153:43-119, 2008. |
[919] | M. Haider, H. Rose, S. Uhlemann, E. Schwan, B. Kabius, and K. Urban. A spherical-aberration-corrected 200 kV transmission electron microscope. Ultramicroscopy, 75:53-60, 1998. |
[920] | M. Haider, S. Uhlemann, and J. Zach. Upper limits for the residual aberrations of a high-resolution aberration-corrected STEM. Ultramicroscopy, 81:163-175, 2000. |
[921] | P. Haider, M .and Hartel, H. Müller, S. Uhlemann, and J. Zach. Information transfer in a tem corrected for spherical and chromatic aberration. Microscopy and Microanalysis, 16:393-408, 2010. |
[922] | J. Hall, M. Ponzi, M. Gonfalini, and G. Maletti. Automatic extraction and characterization of geological features and textures from borehole images and core photographs. In SPWLA 37th Annual Logging Symposium, June 16-19 1996. |
[923] | H.C. Hamaker. The London-Van Der Waals Attraction Between Spherical Particles. Physica , 4(10):1058-1072, 1937. |
[924] | M. Hammel and H. Rose. Optimum rotationally symmetric detector configurations for phase-contrast imaging in scanning transmission electron microscopy. Ultramicroscopy, 58:403-415, 1995. |
[925] | Lin Han, Bertrand Lui, Seth Blumberg, John F. Beausang, Philip C. Nelson, and Rob Philips. Calibration of Tethered Particle Motion Experiments. In C.J. Benham, S. Harvey, W.K. Olson, D.W. Sumners, and D. Swigon, editors, Mathematics of DNA Structure, Funcion and Interactions, volume 150 of The IMA Volumes in Mathematics and its Applications. Springer, 2009. |
[926] | R. Han, Y. Zhang, H. Dong, X .and Gai, and E.S. Yeung. Spectral imaging of single molecules by transmission grating-based epi-fluorescence microscopy. Analytica Chimica Acta, 619:209-214, 2008. |
[927] | Y. Han, A.M. Alsayed, M. Nobili, J. Zhang, T.C. Lubensky, and A.G. Yodh. Brownian Motion of an Ellipsoid. Science, 314, 2006. |
[928] | Allan G. Hanbury and Jean Serra. Morphological operators on the unit circle. IEEE Transactions on Image Processing, 10(12):1842-1850, December 2001. |
[929] | Q.S. Hanley, D.J. Ardent-Jovin, and T.M. Jovin. Spectrally resolved fluorescence lifetime imaging microscopy. Applied Spectroscopy, (56):155-166, 2002. |
[930] | Q.S. Hanley, V. Subramaniam, D.J. Arndt-Jovin, and T.M. Jovin. Fluorescence lifetime imaging: Multi-point calibration, minimum resolvable differences, and artifact suppression. Cytometry, 43:248-260, 2001. |
[931] | Q.S. Hanley, P.J. Verveer, and T.M. Jovin. Spectral imaging in a programmable array microscope by hadamard transform fluorescence spectroscopy. Applied Spectroscopy, (53):1-10, 1999. |
[932] | K. Hansen and J.D. Andersen. Understanding the Hough transform: Hough cell support and its utilization. Image and Vision Computing, 15(3):205-218, 1997. |
[933] | M.B. Hansen. Spatial Statistics for Network Structures in Processed Milk. PhD thesis, The Royal Veterinary and Agricultural University Copenhagen, Copenhagen, Denmark, 1995. |
[934] | M.B. Hansen, A.J. Baddeley, and R.D. Gill. First contact distributions for spatial patterns: Regularity and estimation. Advances in Applied Probability, 31(1):15-33, 1999. |
[935] | M.B. Hansen and E.W. van Zwet. Nonparametric estimation of the chord length distribution. Advances in Applied Probability, 33, 2001. |
[936] | B.M. Hanser, M.G.L. Gustafsson, D.A. Agard, and J.W. Sedat. Phase-retrieved pupil functions in wide-field fluorescence microscopy. Journal of Microscopy, 216:32-48, 2004. |
[937] | John Happel. Low Reynolds number hydrodynamics. Noordhoff, Leyden, The Netherlands, 2nd edition edition, 1973. |
[938] | M.A. Haque. A two-dimensional fast cosine transform. IEEE Transactions on Acoustics, Speech and Signal Processing, 33(6):1532-1538, December 1985. |
[939] | K. Harada, T. Akashi, Y. Togawa, and T. Matsuda. Double-biprism electron interferometry. Applied Physics Letters, 84(17):3219-3231, 2004. |
[940] | K. Harada, T. Akashi, Y. Togawa, T. Matsuda, and A. Tonomura. Optical system for double-biprism electron holography. Journal of Electron Microscopy, 54(1):19-27, 2005. |
[941] | G. Harauz and M. van Heel. Exact filters for general geometry three dimensional reconstruction. Optik, 78(4):146-156, 1997. |
[942] | S. Harlepp, J. Robert, N.C. Darnton, and D. Chateney. Subnanometric measurements of evanescent wave penetration depth using total internal reflection microscopy combined with fluorescent correlation spectroscopy. Applied Physics Letters, 85(17), 2004. |
[943] | G.S. Harms, M. Sonnleitner, G.J. Schütz, H.J. Gruber, and T. Schmidt. Single-molecule anisotropy imaging. Bipphysical Journal, 77:2864-2870, 1999. |
[944] | H.S. von Harrach. Instrumental factors in high-resolution FEG STEM. Ultramicroscopy, 58:1-5, 1995. |
[945] | H.S. von Harrach. Development of the 300-kv vacuum generator stem (1985-1996). Advances in Imaging and Electron Physics, 159:287-322, 2009. |
[946] | T.P. Harrigan and R.W. Mann. Characterization of microstructural anisotropy in orthotropic materials using a second rank tensor. Journal of Materials Science, 19:761-767, 1984. |
[947] | C. Harris and M. Stephens. A combined corner and edge detector. In Proceedings of the fourth Alvey Vision Conference, pages 147-151. University of Manchester, 31 August-2 September 1988. |
[948] | C.G. Harris. Determination of ego-motion from matched points. In Proceedings of the Alvey Vision Conference, 1987. |
[949] | R.A. Harris and J.E. Hearst. On Polymer Dynamics. The Journal of Chemical Physics, 44(7):2595, 1966. |
[950] | A. Harscher and H. Lichte. Experimental study of amplitude and phase detection limits in electron holography. Ultramicroscopy, 64:57-66, 1996. |
[951] | P. Hartel, H. Rose, and C. Dinges. Conditions and reasons for incoherent imaging in STEM. Ultramicroscopy, 63:93-114, 1996. |
[952] | R. Hartley, R. Gupta, and T. Chang. Stereo from uncalibrated cameras. In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition - CVPR'92, pages 761-764, Urbana-Champaign, USA, 15-18 June 1992. |
[953] | R.I. Hartley. Estimation of relative camera positions for uncalibrated cameras. In G. Sandini, editor, Second European Conference on Computer Vision, Lecture Notes in Computer Science 588, pages 579-587, Santa Margherita Ligure, Italy, May 1992. Springer. |
[954] | L.H. Hartwell, J.J. Hopfield, S. Leibler, and A.M. Murray. From molecular to modular cell biology. Nature, 402:C47-C50, 1999. |
[955] | A.R. Harutyunyan, G. Chen, T.M. Paronyan, E.M. Pigos, O.A. Kuznetsov, K. Hewaparakrama, S.M. Kim, D. Zakharov, E.A. Stach, and G.U. Sumanasekera. Preferential growth of single-walled carbon nanotubes with metallic conductivity. Science, 326:116-120, 2009. |
[956] | H. Hassanieh, P. Indyk, D. Katabi, and E. Price. Nearly optimal sparse fourier transform. Technical report, Massachusetts Institute of Technology, USA, arXiv:1201.2501v1 [cs.DS], Jan 2012. |
[957] | G. Haurauz and M. van Heel. Exact filters for general geometry three dimensional reconstruction. Optik, 78:146-156, 1986. |
[958] | H. Haußecker and B. Jähne. A tensor approach for local structure analysis in multi-dimensional images. In B. Girod, H. Niemann, and H.-P. Seidel, editors, Proceedings 3D Image Analysis and Synthesis, Proceedings in Artificial Intelligence 3, pages 171-178. Universität Erlangen-Nürnberg, November 18-19 1996. |
[959] | H. Haußecker and B. Jähne. A tensor approach for precise computation of dense displacement vector fields. In E. Paulus and F.M. Wahl, editors, Proc. Mustererkennung 1997 (Braunschweig, Germany), Informatik Aktuell, pages 199-208. Springer, September 15-17 1997. |
[960] | H.W. Haussecker and D.J. Fleet. Computing optical flow with physical models of brightness variation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23(6):661-673, June 2001. |
[961] | M. Hauta-Kasari, Parkkinen J., T. Jaaskelainen, and R. Lenz. Multi-spectral texture segmentation based on the spectral co-occurrence matrix. Pattern Analysis & Applications, 2:275-284, 1999. |
[962] | W. A. Havelka, R. Henderson, J.A.W. Heymann, and D. Oesterhelt. Projection structure of halorhodopsin from halobacterium halobium at 6 å resolution obtrained by electron cryo-microscopy. Journal of Molecular Biology, 234:837-846, 1993. |
[963] | W.A. Havelka, R. Henderson, and D. Oesterhelt. Three-dimensional structure of halorhodopsin at 7 å resolution. Journal of Molecular Biology, 247:726-738, 1995. |
[964] | S. Haykin. Neural Networks, a comprehensive foundation. Prentice-Hall, second edition, 1999. |
[965] | D. Hearn and M.P. Baker. Computer Graphics. Prentice Hall, Englewood Cliffs, New Jersey, 2 edition, 1997. |
[966] | Richard J. Heaton, Alexander W. Peterson, and Rosina M. Georgiadis. Electrostatic surface plasmon resonance: Direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches. Proceedings of the National Academy of Sciences of the USA, 98(7):3701-3704, 2001. |
[967] | B. Hebert, S. Costantino, and P. W. Wiseman. Spatiotemporal image correlation spectroscopy (stics) theory, verification, and application to protein velocity mapping in living cho cells. Biophysical Journal, 88(5):3601-3614, 2005. |
[968] | C. Hebert and P. Schattschneider. A proposal for dichroic experiments in the electron microscope. Ultramicroscopy, 96:463-468, 2003. |
[969] | F. Hediger, A. Taddei, F.R. Neumann, and S.M. Gasser. Methods for Visualizing Chromatin Dynamics in Living Yeast, volume 375 of Methods in Enzymology, chapter 22. Elsevier Academic Press, 2004. |
[970] | D.J.. Heeger. Optical flow from spatio-temporal filters. International Journal of Computer Vision, 1:279-302, 1988. |
[971] | M. van Heel. Similarity measures between images. Ultramicroscopy, 21:95-100, 1987. |
[972] | M. van Heel, B. Gowen, R. Matadeen, E.V. Orlova, R. Finn, T. Pape, D. Cohen, H. Stark, R. Schmidt, M. Schatz, and A. Patwardhan. Single-particle electron cryo-microscopy: towards atomic resolution. Quarterly Review of Biophysics, 33(4):307-369, 2000. |
[973] | M. van Heel, E.V. Orlova, G. Harauz, H. Stark, P. Dube, F. Zemlin, and M. Schatz. Angular reconstitution in three-dimensional electron microscopy: historical and theoretical aspects. Scanning Microscopy, 11:195-210, 1997. |
[974] | M. van Heel and M. Schatz. Fourier shell correlation threshold criteria. Journal of Structural Biology, 151:250-262, 2005. |
[975] | I. Heertje. Vet zonder vet. Natuur en Techniek, 65(2):30-40, 1997. |
[976] | I. Heertje, E.C. Roijers, and H.A.C.M. Hendrikx. Liquid crystalline phases in the structuring of food products. Lebensmittel-Wissenschaft und Technologie, (31):387-396, 1998. |
[977] | Martin Hegner, Steven B. Smith, and Carlos Bustamante. Polymerization and mechanical properties of single RecA-DNA filaments. Proceedings of the National Academy of Sciences of the USA, 96(18):10109-10114, 1999. |
[978] | M.T. Heideman. Computation of an odd-length dct from a real-valued dft of the same length. IEEE Transactions on Signal Processing, 40(1):54-61, January 1992. |
[979] | E.C. Heider, M. Barhoum, E.M. Peterson, J. Schaefer, and J.M. Harris. Identification of single fluorescent labels using spectroscopic microscopy. Applied Spectroscopy, 64(1):37-45, 2010. |
[980] | H.J.A.M. Heijmans. Morphological Image Operators, volume 25 of Advances in Electronics and Electron Physics. Academic Press, San Diego, 1994. |
[981] | M. Heilemann, D.P. Herten, R. Heintzmann, C. Cremer, C. Müller, P. Tinnefeld, K.D. Weston, J. Wolfrum, and M. Sauer. High-resolution colocalization of single dye molecules by fluorescence lifetime imaging microscopy. Analytical Chemistry, 74(14):3511-3517, 2002. |
[982] | M. Heilemann, S. van de Linde, M. Schüttpelz, R. Kasper, B. Seefeldt, A. Mukherjee, P. Tinnefeld, and M. Sauer. Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes. Angewannte Chemie, 47(33):6172-6176, 2008. |
[983] | M. Heilemann, E. Margeat, R. Kasper, M. Sauer, and P. Tinnefeld. Carbocyanine dyes as efficient reversible single-molecule optical switch. Journal of the American Chemical Society, 127(11):3801-3806, 2005. |
[984] | B. Hein. Live Cell STED Microscopy Using Genetically Encoded Markers. PhD thesis, Georg-August-Universität Göttingen, Göttingen, Germany, 2009. |
[985] | S. von Heine, O. Kratky, G. Porod, and P.J. Schmitz. Eine verfeinerte Theorie der Röntgenkleinwinkelstreuung des verknäuelten Fadenmoleküls und ihre Anwendung auf Cellulosenitrat in Lösung. Macromolecular Chemistry and Physics, 44(1):682-726, 1961. |
[986] | R. Heintzmann. Saturated patterned excitation microscopy with two-dimensional excitation patterns. Micron, 34(7):283-291, 2003. |
[987] | R. Heintzmann. Estimating missing information by maximum likelihood deconvolution. Micron, 38:136-144, 2007. |
[988] | R. Heintzmann and M.G.L. Gustafsson. Subdiffraction resolution in continuous samples. Nature Photonics, 3:362-364, 2009. |
[989] | R. Heintzmann, Q.S. Hanley, D.J. Ardent-Jovin, and T.M. Jovin. A dual path programmable array microscope (PAM): simultaneous acquisition of conjugate and non-conjugate images. Journal of Microscopy, 204:119-135, 2001. |
[990] | R. Heintzmann, T.M. Jovin, and C. Cremer. Saturated patterned excitation microscopy concept for optical resolution improvement. Journal of Optical Society of America A, 19(8):1599-1609, 2002. |
[991] | R. Heintzmann, K.A. Lidke, and T.M. Jovin. Double-pass fourier transform imaging spectroscopy. Optics Express, 12:753-763, 2004. |
[992] | R. Heintzmann, V. Sarafis, P. Munroe, J. Nailon, Q.S. Hanley, and T.M. Jovin. On resolution enhancement by subtraction of confocal signals taken at different pinhole sizes. Micron, 34(7):293-300, 2003. |
[993] | J. Hekrdla. Index transforms of multidimensional cyclic convolutions and discrete Fourier transforms. IEEE Transactions on Acoustics, Speech, and Signal Processing, 34(4):996-996, August 1986. |
[994] | Y. Hel-Or and P.C. Teo. Canonical decomposition of steerable functions. Journal of Mathematical Imaging and Vision, 9:83-95, 1998. |
[995] | S. Hell and E. H. K. Stelzer. Fundamental improvement of resolution with a 4pi-confocal fluorescence microscope using 2-photon excitation. Optics Communications, 93(5-6):277-282, 1992. |
[996] | S.W. Hell. Towards fluorescence nanoscopy. Nature Biotechnology, 21(11):1347-1355, 2003. |
[997] | S.W. Hell. Far-field optical nanoscopy. Science, 316:1153-1158, 2007. |
[998] | S.W. Hell. Microscopy and its focal switch. Nature Methods, 6:24-32, 2009. |
[999] | S.W. Hell, M. Dyba, and S. Jackobs. Concepts for nanoscale resolution in fluorescence microscopy. Current Opinion in Neurobiology, 14(5):599-609, 2004. |
[1000] | S.W. Hell, S. Jakobs, and L. Kastrup. Imaging and writing at the nanoscale with focused visible light through saturable optical transitions. Applied Physics A, 77:859-860, 2003. |
[1001] | S.W. Hell, S. Lindek, C. Cremer, and E.H.K. Stelzer. Measurement of the 4pi-confocal point spread function proves 75 nm axial resolution. Applied Physics Letter, 64(11):1335-1337, 1994. |
[1002] | S.W. Hell, G. Reiner, C. Cremer, and E.H.K. Stelzer. Aberrations in confocal fluorescence microscopy induced by mismatching in refractive index. Journal of Microscopy, 169(3):391-405, 1993. |
[1003] | S.W. Hell, R. Schmidt, and A. Egner. Diffraction-unlimited three-dimensional optical nanoscopy with opposing lenses. Nature Photonics, 3:381-387, 2009. |
[1004] | S.W. Hell, J. Soukka, and P.E. Hänninen. Two- and multiphoton detection as an imaging mode and means of increasing the resolution in far-field light microscopy: a study based on photon-optics. Bioimaging, 3(2):64-69, 1995. |
[1005] | S.W. Hell and J. Wichmann. Breaking the diffraction limit resolution by stimulated emission: stimulated-emission-depletion microscopy. Optics Letters, 19(11):780-783, 1994. |
[1006] | J.A. Helmuth, G. Paul, and I. F. Sbalzarini. Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images. BMC Bioinformatics, 11(372), 2010. |
[1007] | P.R. Hemmer and T. Zapata. The universal scaling laws that determine the achievable resolution in different schemes for super-resolution imaging. Journal of Optics, 14:083002, 2012. |
[1008] | Michael Henderson and Mary C. Meyer. Exploring the Confidence Interval for a Binomial Parameter in a First Course in Statistical Computing. The American Statistician, 55(4):337-344, 2001. |
[1009] | R. Henderson. Image contrast in high-resolution electron microscopy of biological macromlecules: TMV in ice. Ultramicroscopy, 46:1-18, 1992. |
[1010] | R. Henriques, M. Lelek, E.F. Fornasiero, F. Valtorta, C. Zimmer, and M.M. Mhlanga. QuickPALM: 3d real-time photoactivation nanoscopy image processing in ImageJ. Nature Methods, 7(5):339-340, 2010. |
[1011] | H.G.E. Hentschell and I. Procaccia. The infinite number of generalized dimensions of fractals and strange attractors. Physica D, 8(3):435-444, 1983. |
[1012] | M. Herberthsson, A. Brun, and H. Knutsson. Pairs of orientation in the plane. In Proceedings of the SSBA Symposium on Image Analysis, SSBA, March 2006. |
[1013] | M. van Herk. A fast algorithm for local minimum and maximum filters on rectangular and octagonal kernels. Pattern Recognition Letters, 13:517-521, July 1992. |
[1014] | H. Hermann and J. Ohser. Determination of microstructural parameters of random spatial surface fractals by measuring chord length distributions. Journal of Microscopy, 170, Pt 1:87-93, April 1993. |
[1015] | J.J. Hermans and R. Ullman. The statistics of stiff chains, with applications to light scattering. Physica, 18(11):951-971, 1952. |
[1016] | J. Hernando, E.M.H.P. van Dijk, J.P. Hoogenboom, J.-J. Garcia-Lopez, D.N. Reinhoudt, M. Crego-Calama, M.F. Garcia-Parajo, and N.F. van Hulst. Effect of disorder on ultrafast exciton dynamics probed by single molecule spectroscopy. Physical Review Letters, 97:216403, 2006. |
[1017] | R.A. Herring, K. Saitoh, N. Tanaka, and T. Tanji. Coherent electron interference from amorphous tem specimens. Journal of Electron Microscopy, 2010. |
[1018] | A. Hertzmann, C.E. Jacobs, N. Oliver, B. Curless, and D.H. Salesin. Image analogies. In SIGGRAPH, Computer Graphics Proceedings, pages 327-340. ACM Press, 2001. |
[1019] | S.T. Hess, T.P.K. Girirajan, and M.D. Mason. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophysical Journal, 91(11):4258-4272, 2006. |
[1020] | S.T. Hess, T.J. Gould, M.V. Gudhetl, S.A. Maas, K.D. Mills, and J. Zimmerberg. Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories. Proceedings of the National Academy of Sciences, 104(44):17370-17375, 2007. |
[1021] | D. Hestenes. Invariant body kinematics: I. saccadic and compensatory eye movements. Neural Networks, 7(1):65-77, 1994. |
[1022] | D. Hestenes. Invariant body kinematics: II. reaching and neurogeometry. Neural Networks, 7(1):79-88, 1994. |
[1023] | C.J.D. Hetherington, L.Y.S. Chang, S. Haigh, P.D. Nellist, L.C. Gontard, R.E. Dunin-Borkowski, and A.I. Kirkland. High-resolution tem and the application of direct and indirect aberration correction. Microscopy and Microanalysis, 14:60-67, 2008. |
[1024] | P. Heun, T. Laroche, K. Shimada, P. Furrer, and S.M. Gasser. Chromoson dynamics in the yeast interphase nucleus. Science, 294(5549):2181-2187, December 2001. |
[1025] | M.G.L. van den Heuvel, R. Bondesan, M. Cosentino Langomarsino, and C. Dekker. Single-molecule observation of anomalous electrohydrodynamic orientation of microtubules. Physical Review Letters, 101:118301, 2008. |
[1026] | D. Hilbert. Foundations of Geometry. Open Court, La Salle, Illinois, 1971. |
[1027] | C.J. Hilditch. Linear skeletons from square cupboards. In Meltzer B. and Mitchie D., editor, Machine Intelligence, pages 404-420. University Press Edinburgh, 1969. |
[1028] | E.C. Hildreth. The computation of the velocity field. Proceedings of the Royal Society of London B, 221:189-220, 1984. |
[1029] | R. Hilfer. Geometric and dielectric characterization of porous media. Physical Review B, 44(1):60-75, July 1991. |
[1030] | R. Hilfer. Local-porosity theory for flow in porous media. Physical Review B, 45(13):7115-7121, April 1992. |
[1031] | J. Hill, R.and Notte and B. Ward. The alis he ion source and its application to high resolution microscopy. Physics Procedia, 1:135-141, 2008. |
[1032] | J. Hillyard and J. Silcox. Thickness effects in ADF STEM zone axis images. Ultramicroscopy, 52:325-334, 1993. |
[1033] | A. Hilton, J. Illingworth, and T. Windeatt. Statistics of surface curvature estimates. Pattern Recognition, 28(8):1201-1221, 1995. |
[1034] | E. Hinde, F. Cardarelli, M.A. Digman, and E. Gratton. In vivo pair correlation analysis of EGFP intranuclear diffusion reveals DNA-dependent molecular flow. Proceedings of the National Academy of Sciences USA, 107(38):16560-16565, 2010. |
[1035] | Y. Hiraoka, D.A. Agard, and J.W. Sedat. Temporal and spatial coordination of chromosome movement, spindle formation, and nuclear envelope breakdown during prometaphase in drosophila melanogaster embryos. The Journal of Cell Biology, 111(6):2815-2828, 1992. |
[1036] | Y. Hiraoka, J.W. Sedat, and D.A. Agard. The use of a charge-coupled device for quantitative optical microscopy of biological structures. Science, 238:36-41, 1987. |
[1037] | J. Hirsh and R. Schleif. High resolution electron microscopic studies of genetic regulation. Journal of Molecular Biology, 108(2):471-490, 1976. |
[1038] | Donald F. Hodgson and Eric J. Amis. Dilute solution behavior of cyclic and linear polyelectrolytes. Journal of Chemical Physics, 95(10):7653-7663, 1991. |
[1039] | R.A. Hoebe, C.H. van Oven, T.W. jr Gadella, P.B. Dhonukshe, C.J. van Noorden, and E.M.M. Manders. Controlled light-exposure microscopy reduces photobleaching and phototoxicity in fluorescence live-cell imaging. Nature Biotechnology, 25(2):249-253, 2007. |
[1040] | H. Hofmann, T. Voss, K. Kühn, and J. Engel. Localization of flexible sites in thread-like molecules from electron micrographs. comparison of interstitial, basement membrane and intima collagens. Journal of Molecular Biology, 172(3):325-343, 1984. |
[1041] | M. Hofmann, C. Eggeling, S. Jakobs, and S.W. Hell. Breaking the diffraction barrier in fluorescence microscopy at low light intensities by using reversibly photoswitchable proteins. Proceedings of the National Academy of Sciences USA, 102(49):17565-17569, 2005. |
[1042] | M. Hohenstein. Single sideband imagin in high-resolution electron microscopy. Applied Physics A, 54:485-492, 1992. |
[1043] | M.F. Hohmann-Marriott, A.A. Sousa, A.A. Azari, S. Glushakova, G. Zhang, J. Zimmerberg, and R.D. Leapmann. Nanoscale 3d cellular imaging by axial scanning transmission electron tomography. Nature Methods, 6(10):729-732, 2009. Supplementary Information. |
[1044] | M.F. Hohmann-Marriott, A.A. Sousa, A.A. Azari, S. Glushakova, G. Zhang, J. Zimmerberg, and R.D. Leapmann. Nanoscale 3d cellular imaging by axial scanning transmission electron tomography. Nature Methods, 6(10):729-732, 2009. |
[1045] | M. Hohn, G. Tang, G. Goodyear, P.R. Baldwin, Z. Huang, P.A. Penczek, C. Yang, R.M. Glaeser, P.D. Adama, and S.J. Ludtke. Sparx, a new environment for cryo-em image processing. Journal of Strcutural Biology, 157:47-55, 2007. |
[1046] | S.J. Holden, S. Uphoff, and A.N. Kapanidis. Daostorm: an algorithm for high-density super-resolution microscopy. Nature Methods, 8(4):279-280, 2011. |
[1047] | A. Holmes and C. Taylor. Developing a measure of similarity between pixel signatures. In T. Pridmore and D. Elliman, editors, 10th British Machine Vision Conference, volume 2, pages 614-623, 1999. |
[1048] | L. Holtzer, T. Meckel, and T. Schmidt. Nanometric three-dimensional tracking of individual quantom dots in cells. Applied Physics Letters, 90:053902, 2007. |
[1049] | J. Honerkamp. Statistical Physics: An Advanced Approach with Applications. Springer-Verlag, 1998. |
[1050] | A. Hopt and E. Neher. Highly nonlinear photodamage in two-photon fluorescence microscopy. Biophysical Journal, 80(4):2029-2036, April 2001. |
[1051] | Stefan Horbelt, Michael Liebling, and Michael Unser. Discretization of the radon transform and of its inverse by spline convolutions. IEEE Transactions on Medical Imaging, 21(4):363-376, April 2002. |
[1052] | B.K.P. Horn and B.G. Schunck. Determining optical flow. Technical report, Massachusetts Institute of Technology, April 1980. A.I. Memo No. 572. |
[1053] | B.K.P. Horn and B.G. Schunck. Determining optical flow. Artificial Intelligence, 17:185-203, 1981. |
[1054] | P.V.C. Hough. Method and means for recognizing complex patterns. US misc nr. 3069654, 1962. |
[1055] | W. Hoyer, T. Antony, D.I. Cherny, G. Heim, T.M. Jovin, and V. Subramaniam. Dependence of α-synuclein aggregate morphology on solution conditions. Journal of Molecular Biology, 322(2):383-393, 2002. |
[1056] | W. Hoyer, D.I. Cherny, V. Subramaniam, and T.M. Jovin. Rapid self-assembly of α-synuclein observed by in situ atomic force microscopy. Journal of Molecular Biology, 340(1):127-139, 2004. |
[1057] | K. C. Hsia, P. Savropoulos, G. Blobel, and A. Hoelz. Architecture of a coat for the nuclear pore membrane. Cell, 131:1313-1326, 2007. |
[1058] | C.-C. Hsu and J.S. Huang. Partitioned Hough transform for ellipsoid detection. Pattern Recognition, 23:275-282, 1990. |
[1059] | B. Huang, H. Babcock, and X. Zhuang. Breaking the diffraction barrier: Super-resolution imaging of cells. Cell, 143:1047-1058, 2010. |
[1060] | B. Huang, S.A. Jones, B. Brandenburg, and X. Zhuang. Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution. Nature Methods, 5(12):1047-1053, 2008. |
[1061] | B. Huang, W. Wang, M. Bates, and X. Zhuang. Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy. Science, 319:810-813, 2008. |
[1062] | C.-L. Huang and Y.-T. Chen. Motion estimation method using a 3d steerable filter. Image and Vision Computing, 13(1):21-32, February 1995. |
[1063] | F. Huang, T.M.P. Hartwich, F.E. Rivera-Molina, Y. Lin, C. Whitney, J.J. Long, P.D. Uchil, J.R. Myers, M.A. Baird, W. Mothes, M.W. Davidson, D. Toomre, and J. Bewersdorf. Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms. Nature Methods, 10(7):653-658, 2013. |
[1064] | F. Huang, S.L. Schwartz, J.M. Byars, and K.A. Lidke. Simultaneous multiple-emitter fitting for single molecule super-resolution imaging. Biomedical Optics Express, 2(5):1377-1393, 2011. |
[1065] | N.E. Huang, Z. Shen, S.R. Long, M.C. Wu, H.H. Shih, Q. Zheng, N.-C. Yen, C.C. Tung, and H.H. Liu. The empirical mode decomposition and the Hilbert spectrum for nonlinear and non-stationary time series analysis. Proceedings of the Royal Society of London A, 454:903-995, 1998. |
[1066] | T. Huang, L.M. Browning, and X.-H. Nancy Xu. Far-field photostable optical nanoscopy (PHOTON) for real-time superresolution single-molecular imaging of signaling pathways of single live cells. Nanoscale, 4:2797, 2012. |
[1067] | T.S. Huang, G.J. Yang, and G.Y. Tang. A fast two-dimensional median filtering algorithm. IEEE Transactions on Acoustics, Speech, and Signal Processing, 27(1):13-18, February 1979. |
[1068] | D.H. Hubel and T.N. Wiesel. Receptive fields, binocular interaction and functional architecture in the cat's visual cortex. The Journal of Physiology, 160:106-154, 1962. |
[1069] | F. Hue, C.L. Johnson, S. Lartigue-Korinek, G. Wang, P.R. Buseck, and M.J. Hytch. Calibration of projector lens distortions for quantitative high-resolution tem. Microsc Microanal, 11 (Suppl 2):552-553, 2005. |
[1070] | Timothy R. Hughes and Daniel D. Shoemaker. DNA microarrays for expression profiling. Current Opinion in Chemical Biology, 5:21-25, 2001. |
[1071] | S. Huh, S. Eom, D.F. Elmer Ker, L. Weiss, and T. Kanade. Mitosis detection of hematopoietic stem cell populations in time-lapse phase-contrast microscopy images. In IEEE International Symposium on Biomedical Imaging, pages 390-393, Barcelona, Spain, May 2-5 2012. IEEE. |
[1072] | Jan Huisken, Jim Swoger, Filippo Del Bene, Joachim Wittbrodt, and Ernst H. K. Stelzer. Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy. Science, 305(5686):1007-1009, 2004. |
[1073] | R. Hummel and R. Moniot. Reconstructions from zero crossings in scale space. IEEE Transactions on Acoustics, Speech and Signal Processing, 37(12):2111-2130, December 1989. |
[1074] | R.A. Hummel. Representation based on zero-crossings in scale-space. In IEEE Proceedings of the International Conference on Computer Vision and Pattern Recognition, pages 204-209, 1986. |
[1075] | R.A. Hummel, B. Kimia, and S.W. Zucker. Deblurring gaussian blur. Computer Vision, Graphics, and Image Processing, 38:66-80, 1987. |
[1076] | M.J. Humphry, B. Kraus, A.C. Hurst, A.M. Maiden, and J.M. Rodenburg. Ptychographic electron microscopy using high-angle dark-field scattering for sub-nanometre resolution imaging. Nature communications, 3:730-736, 2012. DOI: 10.1038/ncomms1733. |
[1077] | D.J. Hurley, M.S. Nixon, and J.N. Carter. Force field energy functionals for image feature extraction. In T. Pridmore and D. Elliman, editors, 10th British Machine Vision Conference, volume 2, pages 604-613, 1999. |
[1078] | J. Hurri, H. Gävert, J. Särelä, and A. Hyvärinen. FastICA: An implementation of the fast fixed-point algorithm for independent component analysis in MATLAB, version 2.3, 2004. Helsinki University of Technology, http://www.cis.hut.fi/projects/ica/fastica/. |
[1079] | J.L. Hutchison, J.M. Titchmarsh, D.J.H. Cockayne, R.C. Doole, C.J.D. Hetherington, A.I. Kirkland, and H. Sawada. A versatile double aberration-corrected, energy filtered HREM/STEM for materials science. Ultramicroscopy, 103:7-15, 2005. |
[1080] | Changbong Hyeon, Ruxandra I. Dima, and D. Thirumalai. Size, shape, and flexibility of RNA structures. The Journal of Chemical Physics, 125(3):194905, 2006. |
[1081] | Changbong Hyeon and D. Thirumalai. Kinetics of interior loop formation in semiflexible chains. The Journal of Chemical Physics, 124(10):104905, 2006. |
[1082] | N. E. Hynes, K. Horsch, M. A. Olayioye, and A. Badache. The erbb receptor tyrosine family as signal integrators. Endocr Relat Cancer, 8(3):151-9, 2001. |
[1083] | M.J. Hytch, E. Snoeck, and R. Kilaas. Quantitative measurement of displacement and strain fields from hrem micrographs. Ultramicroscopy, 74:131-146, 1998. |
[1084] | D. Hyun Chung and G. Sapiro. On the level lines and geometry of vector valued images. IEEE Signal Processing Letters, 7:241-243, 2000. |
[1085] | A. Hyvärinen. Fast and robust fixed-point algorithms for independent component analysis. IEEE Transactions on Neural Networks, 10(3):626-634, 1999. |
[1086] | A. Hyvärinen, J. Karhumen, and E. Oja. Independant Component Analysis. Wiley Interscience, New York, 2001. |
[1087] | C.V. Iancu, E.R. Wright, J.B. Heymann, and G.J. Jensen. A comparison of liquid nitrogen and liquid helium as cryogens for electron cryotomography. Journal of Structural Biology, 153:231-240, 2006. |
[1088] | H. Iddir, M.M. Disko, S. Ogut, and N.D. Browning. Atomic scale characterization of the pt/tio2 interface. Micron, 36:233-241, 2005. |
[1089] | IEEE. IEEE Standard for Binary Floating-Point Arithmetic. Standards Committee of the IEEE Computer Society, 1985. Std. 754-1985. |
[1090] | IEEE. IEEE Standard for Radix-Independent Floating-Point Arithmetic. Technical Committee on Microprocessors and Microcomputers of the IEEE Computer Society, 1987. Std. 854-1987. |
[1091] | H. Illers, D. van den Broucke, and E. Buhr. Measurement of correlated noise in images of computed radiography systems and its influence on the detective quantum efficiency. In Proceedings of SPIE, San Diego, California, USA, 2004. |
[1092] | H. Illers, E. Buhr, D. Bergmann, and C. Hoeschen. Measurement of the detective quantum efficiency (dqe) of digital x-ray imaging devices according to the standard iec 62220-1. In SPIE Proceedings, volume 5368, pages 177-187, Bellingham, Washington, USA, 2004. |
[1093] | J. Illingworth and J. Kittler. A survey of the Hough transform. Computer Vision, Graphics and Image Processing, 44(1):87-116, 1988. |
[1094] | J. Immerk. Fast noise variance estimation. Computer Vision and Image Understanding, 64(2):300-302, 1996. |
[1095] | M.A. Ioannidis and I. Chatzis. On the geometry and topology of 3d stochastic porous media. Journal of Colloid and Interface Science, 229:323-334, 2000. |
[1096] | T. Isabell, J. Brink, M. Kawasaki, B. Armbruster, I. Ishikawa, E. Okunishi, H. Sawada, Y. Okura, K. Yamazaki, T. Ishikawa, M. Kawazu, M. Hori, M. Terao, M. Kanno, S. Tanba, and Y. Kondo. Development of a 200kv atomic resolution analytical electron microscope. Microscopy Today, pages 8-10, 2009. |
[1097] | H. Isack and Y. Boybov. Energy-based geometric multi-model fitting. International Journal of Computer Vision, 97:123-147, 2012. |
[1098] | D. Isailovic, Y. Xu, T. Copus, S. Sarawat, and S.M. Nauli. Multimodal spectral imaging of cells using a transmission diffraction grating on a light microscope. Applied Spectroscopy, 65(6):575-583, 2011. |
[1099] | T. Ishitani, C. Kamiya, and M. Sato. Influence of random noise on the contrast-to-gradient image resolution in scanning electron microscopy. Journal of Electron Mircoscopy, 54(2):85-97, 2005. |
[1100] | T. Ishitani and M. Sato. Contrast-to-gradient method for the evaluation of image resolution in scanning electron microscopy. Journal of Electron Mircoscopy, 51(6):369-382, 2002. |
[1101] | T. Ishitani and M. Sato. A method for personal expertise-independent evaluation of image resolution in scanning electron microscopy. Scanning, 24(4):191-203, 2003. |
[1102] | T. Ishitani and M. Sato. Contrast-to-gradient method for the evaluation of image resolution taking account of random noise in scanning electron microscopy. Journal of Electron Mircoscopy, 53(3):245-255, 2004. |
[1103] | K. Ishizuka. Contrast transfer of crystal images in TEM. Ultramicroscopy, 5:55-65, 1980. |
[1104] | L.A. Iverson. Toward Discrete Geometric Models for Early Vision. PhD thesis, McGill University, Montréal, Canada, 1994. |
[1105] | L.A. Iverson and S.W. Zucker. Logical/linear operators for image curves. IEEE Transactions on Pattern Analysis and Machine Intelligence, 17(10):982-996, October 1995. |
[1106] | I. Izeddin, J. Boulanger, V. Racine, C.G. Specht, A. Kechkar, D. Nair, A. Triller, D. Choquet, M. Dahan, and J.B. Sibarita. Wavelet analysis for single molecule localization microscopy. Optics Express, 20(3):2081-2095, 2012. |
[1107] | Paul T. Jackway. On the scale-space theorem of chen and yan. IEEE Transactions on Pattern Analysis and Machine Intelligence, 20(3):351-352, 1998. |
[1108] | Paul T. Jackway and Mohamed Deriche. Scale-space properties of the multiscale morphological dilation-erosion. IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(1):38-51, January 1996. |
[1109] | C. Jacobsen, S. Wirick, G. Flynn, and C. Zimba. Soft x-ray spectroscopy from image sequences with sub-100nm spatial resolution. Journal of Microscopy, 197(2):173-184, 2001. |
[1110] | Volker Jacobsen, Patrick Stoller, Christian Brunner, Viola Vogel, and Vahid Sandoghdar. Interferometric optical detection and tracking of very small gold nanoparticles at a water-glass interface. Optics Express, 14(1):405, 2006. |
[1111] | A. Jaffer. Algebra and the lambda calculus. Dr. Dobbs's Journal, pages 36-40, September 1993. |
[1112] | B. Jähne. Spatio-Temporal Image Processing. Number 751 in Lecture Notes in Computer Science. Springer-Verlag, Berlin, 1993. |
[1113] | B. Jähne. Digital Image Processing. Springer, Berlin, 4th edition, 1997. |
[1114] | B. Jähne. Practical handbook on Image Processing for Scientific Applications. CRC Press, 1997. |
[1115] | B. Jähne. Practical Handbook on Image Processing for Scientific Applications. CRC Press, New York, 1997. |
[1116] | B. Jähne. Digital Image Processing. Springer-Verlag, Berlin, 2002. |
[1117] | A. Jain and R. Dubes. Algorithms for Clustering Data. Prentice Hall, 1988. |
[1118] | A.K. Jain. A sinusoidal family of unitary transforms. IEEE Transactions on Pattern Analysis and Machine Intelligence, 1(4):356-365, October 1979. |
[1119] | A.K. Jain. Fundamentals of Digital Image Processing. Prentice-Hall, 1989. |
[1120] | A.K. Jain, R.P.W. Duin, and J. Mao. Statistical pattern recognition: A review. IEEE Transactions on Pattern Analysis and Machine Intelligence, 22(1):4-37, 2000. |
[1121] | M. Jakobsen and T.A. Johansen. Anisotropic approximations for mudrocks: a seismic laboratory study. Geophysics, 65(6):1711-1725, November/December 2000. |
[1122] | E.M. James and N.D. Browning. Practical aspects of atomic resolution imaging and analysis in STEM. Ultramicroscopy, 78:125-139, 1999. |
[1123] | E.M. James and J.M Rodenburg. A method for measuring the effective source coherence in a field emission transmission electron microscope. Applied Surface Science, 111:174-179, 1997. |
[1124] | T. Jamieson, R. Bakhshi, D. Petrova, R. Pocock, M. Imani, and A.M. Seifalian. Biological applications of quantum dots. Biomaterials, 28(31):4717-4732, 2007. |
[1125] | F. Jamitzky, R.W. Stark, W. Bunk, S. Thalhammer, C. Räth, T. Aschenbrenner, G.E. Morfill, and W.M. Heckl. Scaling-index method as an image processing tool in scanning-probe microscopy. Ultramicroscopy, 86(1-2):241-246, 2001. |
[1126] | R.C. Jansen, K. Reinink, and G.W.A.M. van der Heijden. Analysis of grey level histograms by using statistical methods for mixtures of distributions. Pattern Recognition Letters, 14:585-590, 1993. |
[1127] | K. Jaqaman, D. Loerke, M. Mettlen, H. Kuwara, S. Grinstein, S.L. Schmid, and G. Danuser. Robust single-particle tracking in live-cell time-lapse sequences. Nature Methods, 5(8):695-702, 2008. |
[1128] | E.A. Jares-Erijman and T.M. Jovin. Determination of dna helical handedness by fluorescence resonance energy transfer. Journal of Molecular Biology, 257(3):597-617, 1996. |
[1129] | E.A. Jares-Erijman and T.M. Jovin. FRET imaging. Nature Biotechnology, 21(7):1138-1395, 2003. |
[1130] | E.A. Jares-Erijman and T.M. Jovin. Imaging molecular interactions in living cells by FRET microscopy. Current Opinion in Chemical Biology, 2006. |
[1131] | J.F. Jarvis and C.S. Roberts. A new technique for displaying continuous tone images on a bilevel display. IEEE Transactions on Communications, pages 891-898, August 1976. |
[1132] | F. Jaskolski, C. Mulle, and O.J. Manzoni. An automated method to quantify and visualize colocalized fluorescent signals. Journal of Neuroscience Methods, 146(1):42-49, 2005. |
[1133] | G.J. Jensen and A. Briegel. How electron cryotomography is opening a new window onto prokaryotic ultrastructure. Current Opinion in Structural Biology, 17:260-267, 2007. |
[1134] | G.J. Jensen and R.D. Kornberg. Defocus-gradient corrected back-projection. Ultramicroscopy, 84:57-64, 2000. |
[1135] | A.D. Jepson and D.J. Fleet. Scale-space singularities. In O. Faugeras, editor, Computer Vision - ECCV90. Proceedings, 1990, pages 50-55. Springer-Verlag, 1990. |
[1136] | A.D. Jepson and D.J. Fleet. Phase singularities in scale-space. Image and Vision Computing, 9(5):338-343, October 1991. |
[1137] | A. Jesacher, S. Fürhapter, S. Bernet, and M. Ritsch-Marte. Shadow effects in spiral phase contrast microscopy. Physics Review Letters, 94:233902, 2005. |
[1138] | D. Jeulin. Morphological modeling of images by sequential random functions. Signal Processing, 16:403-431, 1989. |
[1139] | D. Jeulin. Random models for morphological analysis of powders. Journal of Microscopy, 172, Pt 1:13-21, October 1993. |
[1140] | D. Jeulin. Random texture models for material structures. Statistics and Computing, 10:121-132, 2000. |
[1141] | D. Jeulin and M.B. Kurdy. Directional mathematical morphology for oriented image restoration and segmentation. Acta Stereology, 11(suppl. I):545-550, 1992. |
[1142] | D. Jeulin, P. Monnaie, and F. P?onnet. Gypsum morphological analysis and modeling. Cement & Concrete Composites, 23:299-311, 2001. |
[1143] | A. Jezierska, H. Talbot, C. Chaux, J.-C. Pesquet, and G. Engler. Poisson-gaussian noise parameter estimation in fluorescence microscopy imaging. In IEEE International Symposium on Biomedical Imaging, pages 1663-1666, Barcelona, Spain, May 2-5 2012. IEEE. |
[1144] | N. Ji, D.E. Milkie, and E. Betzig. Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues. Nature Methods, 7(2):141-150, 2010. |
[1145] | C.-L. Jia, M. Lentzen, and K. Urban. High-resolution transmission electron microscopy using negative spherical aberration. Microscopy and Mircoanalysis, 10:174-184, 2004. |
[1146] | C.-L. Jia, S.-B. Mi, K. Urban, I. Verjoiu, M. Alexe, and D. Hesse. Atomic-scale study of electric dipoles near charged and uncharged domain walls in ferroelectric films. Nature, 7:57-61, 2008. |
[1147] | L. Jiang, Z. Liu, D. Georgieva, M.E. Kuil, and J.P. Abrahams. A novel approximation method of ctf amplitude correction of 3d single particle reconstruction. Ultramicroscopy, 2010. |
[1148] | N. Jiang, B. Jiang, R. Erni, N.D. Browning, and J.C.H. Spence. Experimental and theoretical improvements on understanding of the O K-edge of TeO2. Ultramicroscopy, 106:123-129, 2006. |
[1149] | W. Jiang, M.L. Baker, Q. Wu, C. Bajaj, and W. Chiu. Applications of a bilateral denoising filter in biological electron microscopy. Journal of Structural Biology, 144:114-122, 2003. |
[1150] | W. Jiang, M.L. Baker, Q. Wu, C. Bajaj, and W. Chiu. Applications of a bilateral denoising filter in biological electron microscopy. Journal of Structural Biology, 144:114-122, 2003. |
[1151] | X. Jiang, R. chen, and S.F. Bent. Spatial control over atomic layer deposition using microcontact-printed resists. Surface & Coatings Technology, 201:8799-8807, 2008. |
[1152] | S. Jin, P. M. Haggie, and A. S. Verkman. Single-particle tracking of membrane protein diffusion in a potential: Simulation, detection, and application to confined diffusion of cftr cl- channels. Biophysical Journal, 93(3):1079-1088, 2007. |
[1153] | S. Jin and A. S. Verkman. Single particle tracking of complex diffusion in membranes: Simulation and detection of barrier, raft, and interaction phenomena. Journal of Physical Chemistry B, 111(14):3625-3632, 2007. |
[1154] | J.R. Jinscheck and S. Helveg. Image resolution and sensitivity in an environmental transmission electron microscope. Micron, 43:1156-1168, 2012. |
[1155] | J.R. Jinschek, E. Yucelen, H.A. Calderon, and B. Freitag. Quantitative atomic 3-d imaging of single/double sheet graphene structure. Carbon, 2010. |
[1156] | Kyubong Jo, Dalia M. Dhingra, Theo Odijk, Juan J. de Pablo, Michael D. Graham, Rod Runnheim, Dan Forrest, and David C. Schwartz. A single-molecule barcoding system using nanoslits for DNA analysis. Proceedings of the National Academy of Sciences of the USA, 104(8):2673-2678, 2007. |
[1157] | M. Joanicot and B. Revet. DNA conformational studies from electron microscopy. I. Excluded volume effect and structure dimensionality. Biopolymers, 26(2):315-326, 1987. |
[1158] | P. Johansen, M. Nielsen, and O.F. Olsen. Branch points in one-dimensional Gaussian scale space. Journal of Mathematical Imaging and Vision, 13(3):193-203, 2000. |
[1159] | P. Johansen, S. Skelboe, K. Grue, and J.D. Andersen. Representing signals by their toppoints in scale space. In Proceeding of the 8th International Conference on Pattern Recognition, volume 1, pages 215-217, 1986. |
[1160] | C.W. Jones, J.C. Wang, R.W. Briehl, and M.S. Turner. Measuring forces between protein fibers by microscopy. Biophysical Journal, 88(4):2433-2441, 2005. |
[1161] | Ronald Jones and Pierre Soille. Periodic lines: Definition, cascades, and application to granulometries. Pattern Recognition Letters, 17(10):1057-1063, 1996. |
[1162] | S.A. Jones, S.-H. Shim, J. He, and X. Zhuang. Fast, three-dimensional super-resolution imaging of live cells. Nature Methods, 8(6):499-505, 2011. |
[1163] | N. de Jong and J.M. Bonard. Carbon nanotube electron sources and applications. Philosophical Transactions of the Royal Society of London A, 362:2239-2266, 2004. |
[1164] | N. de Jonge, N. Poirier-Demes, H. Dermes, D.B. Peckys, and D. Drouin. Nanometer-resolution electron microscopy through micrometers-thick water layers. Ultramicroscopy, 110:1114-1119, 2010. |
[1165] | P.P. Jonker. Skeletons in N dimensions using shape primitives. Pattern Recognition Letters, 23(6):677-686, 2002. |
[1166] | R. Josth, M. Dubska, A. Herout, and J. Havel. Real-time line detection using accelerated high-resolution hough transform. In A. Heyden and F. Kahl, editors, Image Analysis, Lecture Notes in Computer Science 6688, pages 784-793, Heidelberg, 2011. Springer. |
[1167] | T. Jovanovic-Talisman, J. Tetenbaum-Novatt, A.S. McKenney, A. Zilman, R. Peters, M.P. Rout, and B.T. Chait. Artificial nanopores that mimic the transport selectivity of the nuclear pore complex. Nature, 457:1023-1027, 2008. |
[1168] | T.M. Jovin. Quantum dots finally come of age. Nature Biotechnology, 21:32-33, 2003. |
[1169] | T.M. Jovin and D.J. Arndt-Jovin. FRET microscopy: Digital imaging of fluorescence resonance energy transfer. application in cell biology. In E. Kohen, editor, Cell Structure and Function by Microspectrofluorometry, pages 99-117. Academic Press, New York, 1989. |
[1170] | T.M. Jovin, W. Caarls, and A. de Vries. Optical modulator device and spatio-temporally light modulated imaging system. WO 2011/116904, 29 Septemeber 2011. |
[1171] | D.C. Joy. SMART- a programm to measure SEM resolution and imaging performance. Journal of Microscopy, 208(1):24-34, 2002. |
[1172] | B. Kabius, P. Hartel, M. Haider, H. Müller, S. Uhlemann, U. Loebau, J. Zach, and H. Rose. First application of cc-corrected imaging for high-resolution and energy-filtered tem. Journal Of Electron Microscopy, 1:1-9, 2009. |
[1173] | A. Kadyrov and M. Petrou. The trace transform and its applications. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23(8), 2001. |
[1174] | W. Kahan. The baleful effect of computer benchmarks upon applied mathematics, physics and chemistry. Mathematics Dept., and Elect. Eng. & Computer Sci. Dept., University of California, USA, 1995. |
[1175] | U. Kaise, D.A. Muller, J.L. Grazul, A. Chuvilin, and M. Kawasaki. Direct observation of defect-mediated cluster nucleation. Nature materials, 1:102-106, 2002. |
[1176] | A. C. Kak and M. Slaney. Principles of Computerized Tomographic Imaging. IEEE Press, 1988. |
[1177] | Y. Kalaidzidis. Intracelluar objects tracking. European Journal of Cell Biology, 86:569-578, 2007. |
[1178] | Y. Kalaidzidis. Multiple objects tracking in fluorescence microscopy. Journal of Mathematical Biology, 58:57-80, 2009. |
[1179] | S.N. Kalitzin, B. ter Haar Romeny, and M.A. Viergever. Invertible apertured orientation filters in image analysis. International Journal of Computer Vision, 31(2/3):145-158, 1999. |
[1180] | S.N. Kalitzin, B.M. ter Haar Romeny, and M.A. Viergever. Invertible orientation bundles on 2d scalar images. In Proceedings of the First International Conference on Scale-Space Theory in Computer Vision, Lecture Notes in Computer Science, pages 77-88. Springer-Verlag, July 1997. |
[1181] | E.A. Kaltenbacher and R.C. Hardie. High resolution infrared image reconstruction using multiple, low resolution, aliased frames. In SPIE Proceedings, volume 2751, pages 142-152, 1996. |
[1182] | M. Kampmann, C.E. Atkinson, A.L. Mattheyses, and S.M. Simon. Mapping the orientation of nuclear pore proteins in living cells with polarized fluorescence microscopy. Nature structural & molecular biology, 18(6):643-650, 2011. |
[1183] | M. Kampmann and G. Blobel. Three-dimensional structure and flexibility of a membrane-coating module of the nuclear pore complex. Nature structural & molecular biology, 16(7):782-789, 2009. |
[1184] | P. Kanchanawong, G. Shtengel, A.M. Pasapera, E.B. Ramko, M.W. Davidson, H.F. Hess, and C.M. Waterman. Nanoscale architecture of integrin-based cell adhesions. Nature, 468:580-584, 2010. |
[1185] | S. Kanmani, C. Babu Rao, and B. Raj. On the computation of the minkowski dimension using morphological operations. Journal of Microscopy, 170, Pt 1:81-85, April 1993. |
[1186] | H.P. Kao and A.S. Verkman. Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position. Biophysical Journal, 67(3):1291-1300, 1994. |
[1187] | A.M.L. Kappers, S.F. te Pas, J.J. Koenderink, and A.J van Doorn. Detection of divergence in optical flow fields. Journal of the Optical Society of America A, 13(2):227-235, 1996. |
[1188] | J.N. Kapur, P.K. Sahdoo, and A.K.C. Wong. A new method for gray-level picture thresholding using the entropy of the histogram. Computer Vision, Graphics, and Image Processing, 29(3):273-285, 1985. |
[1189] | J. Karlholm. Local Signal Models for Image Sequence Analysis. PhD thesis, Linköping University, Linköping, Sweden, 1998. |
[1190] | M.A. Karreman. Light will guide you. PhD thesis, Utrecht University, March 2013. |
[1191] | M. Karuppasamy, F Karimi Nejadasl, M. Vulovic, A.J. Koster, and R.B.G. Ravelli. Radiation damage in single-particle cryo-electron microscopy: effects of dose and dose rate. Journal of Synchrotron Radiation, 18:398-412, 2011. |
[1192] | M. Kass and A. Witkin. Analyzing oriented patterns. Computer Vision, Graphics and Image Processing, 37:362-385, 1987. |
[1193] | M. Kass, A. Witkin, and D. Terzopoulos. Snakes: Active contour models. International Journal of Computer Vision, pages 321-331, 1988. |
[1194] | A.I. Katsevich. Local tomography for the generalized radon transform. SIAM J. Appl. Math., 57(4):1128-1162, August 1997. |
[1195] | R. Kaufmann, P. Müller, M. Hausmann, and C. Cremer. Imaging label-free intracellular structures by localisation microscopy. Micron, 42:348-352, 2011. |
[1196] | R. Kaufmann, P. Müller, G. Hildenbrand, M. Hausmann, and C. Cremer. Analysis of Her2/neu membrane protein clusters in different types of breast cancer cells using localization microscopy. Journal of Microscopy, 242(1):46-54, 2011. |
[1197] | S.M. Kay. Fundamentals of Statistical Processing: Estimation Theory. Prentice Hall, New Jersey, 1993. |
[1198] | I. Kazantsev, J. Klukowska, G.T. Herman, and L. Cernetic. Fully three-dimensional defocus-gradient corrected backprojection in cryoelectron microscopy. Ultramicroscopy, 110:1128-1142, 2010. |
[1199] | P. Kazemian, S.A.M. Mentink, C. Rodenburg, and C.J. Humphreys. Quantitative secondary electron energy filtering in a scanning electron microscope and its applications. Ultramicroscopy, 107:140-150, 2006. |
[1200] | A. Kechkar, D. Nair, M. Heilemann, Da. Choquet, and J.-B. Sibarita. Real-time analysis and visualization for single-molecule based super-resolution microscopy. PLoS ONE, 8(4):e62918, 04 2013. |
[1201] | M.R. Keenan and P.G. Kotula. Accounting for poisson noise in the multivariate analysis of ToF-SIMS spectrum images. Surface and Interface Analysis, 36(3):203-212, 2004. |
[1202] | N. Kehtarnavaz and R.J.P. de Figueiredo. A 3-d contour segmentation scheme based on curvature and torsion. IEEE Transactions on Pattern Analysis and Machine Intelligence, 10(5):707-713, September 1988. |
[1203] | F.J. Keil. Modelling of phenomena within catalyst particles. Chemical Engineering Science, 51(10):1543-1567, May 1996. |
[1204] | Y. Keller and Y. Shkolnisky. A signal processing approach to symmetry detection. IEEE Transactions on Image Processing, 15(8):2198-2207, 2006. |
[1205] | G.M.P. van Kempen. Image Restoration in Fluorescence Microscopy. PhD thesis, Delft University of Technology, Delft, The Netherlands, 1999. |
[1206] | G.M.P. van Kempen, N. van den Brink, L.J. van Vliet, M. van Ginkel, and P.W. Verbeek. The application of a local dimensionality estimator to the analysis of 3d microscopic network structures. In SCIA'99, Proc. 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland), pages 447-455, June 7-11 1999. |
[1207] | G.M.P. van Kempen and L.J. van Vliet. Background estimation in nonlinear image restoration. Journal of the Optical Society of America, 17(3):425-434, 2000. |
[1208] | G.M.P. van Kempen and L.J. van Vliet. Mean and variance of ratio estimators used in fluorescence ratio imaging. Cytometry, 39(4):300-305, 2000. |
[1209] | G.M.P. van Kempen, L.J. van Vliet, P.J. Verveer, and H.T.M. van der Voort. A quantitative comparison of image restoration methods for confocal microscopy. Journal of Microscopy, 185(3):354-365, 1997. |
[1210] | R.L. Kendrick, D.S. Acton, and A.L. Duncan. Phase-diversity wave-front sensor for imaging systems. Applied Optics, 33(27):6533-6546, 1994. |
[1211] | D.J. Kerbyson and T.J. Atherton. Circle detection using Hough transform filters. In Image Processing and Its Applications, pages 370-374, 4-6 July 1995. |
[1212] | Christoph Kessler. The digoxigenin:anti-digoxigening (DIG) technology - a survey on the concept and realization of a novel bioanalytical indicator system. Molecular and Cellular Probes, 5:161-205, 1991. |
[1213] | David A. Kessler and Yitzhak Rabin. Distribution functions for filaments under tension. Journal of Chemical Physics, 121(2):1155-1164, 2004. |
[1214] | R. G. Keys. Cubic convolution interpolation for digital image processing. IEEE Transactions on Acoustics, Speech, and Signal Processing, 29(6):1153-1160, 1981. |
[1215] | N. Khaneja, M. I. Miller, and U. Grenander. Dynamic programming generation of curves on brain surfaces. IEEE Transaction on Pattern Analysis and Machine Intelligence, 20(11):1260-1265, 1998. |
[1216] | A. Khotanzad and Y.H. Hong. Invariant image recognition by Zernike moments. IEEE Transactions on Pattern Analysis and Machine Intelligence, 12(5):489-497, May 1990. |
[1217] | A. Khursheed and H.Q. Hoang. Redesign of the scanning electron microscope for parallel energy spectral acquisition. Ultramicroscopy, 108:151-157, 2007. |
[1218] | A. Kiel, J. Kovacs, A. Mokhir, R. Krämer, and D.-P. Herten. Direct monitoring of formation and dissociation of individual metal complexes by single-molecule fluorescence spectroscopy. Angewandte Chemie Interational Edition, 46:3363-3366, 2007. |
[1219] | E. Kim, H. Xiong, C.C. Striemer, D.Z. Fang, P.M. Fauchet, J.L. McGrath, and S. Amemiya. A structure-permeability relationship of ultrathin nanoporous silicon membrane: a comparison with the nuclear envelope. Journal of the American Chemical Society, 130:4230-4231, 2008. |
[1220] | H.S. Kim, M.L. Yu, M.G.R. Thomson, E. Kratchmer, and T.H.P. Chang. Energy distributions of zr/o/w schottky electron emission. Journal of Applied Physics, 81:461-465, 1997. |
[1221] | H.S. Kim, M.L. Yu, M.G.R. Thomson, E. Kratchmer, and T.H.P. Chang. Performance of zr/o/w schottky emitters at reduced temperatures. Journal of Vaccum Science and Technology B, 15:2284-2288, 1997. |
[1222] | N.H. Kim, A.C. Bovik, and S.J. Aggarwal. Shape description of biological objects via stereo light microscopy. IEEE Transactions on Systems, 20(2):475-489, 1990. |
[1223] | B. Kimia, A. Tannenbaum, and S.W. Zucker. On the evolution of curves via a function of curvature. i. the classical case. Journal of Mathematical Analysis and Applications, 163:438-458, 1992. |
[1224] | C. Kimme, D. Ballard, and J. Sklansky. Finding circles by an array of accumulators. Communications of the ACM, 18(2):120-122, February 1975. |
[1225] | K. Kimoto, G. Kothleitner, W. Grogger, Y. Matsui, and F. Hofer. Advantages of a monochromator for bandgap measurements using electron energy-loss spectroscopy. Micron, 36:185-189, 2005. |
[1226] | D. Kincaid. Numerical analysis; mathematics of scientific computing. Pacific Grove, Brooks/Cole, 1991. |
[1227] | T.J. Kippenberg, R. Holzwarth, and S.A. Diddams. Microresonator-based optical frequency combs. Science, 332:555-560, 2011. |
[1228] | N. Kirchgessner. Extraktion Physiologischer Koordinatensysteme von Pflanzenwurzeln und -Blättern aus Bildsequenzen. PhD thesis, Ruprechts-Karls-Universität University, Heidelberg, Germany, April 2003. |
[1229] | E.J. Kirkland, R.F. Loane, and J. Silcox. Simulation of annular dark field STEM images using a modified mutlislice method. Ultramicroscopy, 23:77-96, 1987. |
[1230] | S.J. Kirkpatrick and D.D. Duncan. Performance of a gradient-based shift estimator in a spatially sparse data environment: tracking the sub-pixel motion of fluorescent particles. Journal of Microscopy, 212(1):64-72, 2008. |
[1231] | H. Kirshner, F. Aguet, D. Sage, and M. Unser. 3-D PSF fitting for fluorescence microscopy: implementation and localization application. Journal of Microscopy, 249(1):13-25, 2013. |
[1232] | N. Kiryati and A.M. Bruckstein. Antialiasing the Hough transform. CVGIP: Graphical Models and Image Processing, 53(3):213-222, May 1991. |
[1233] | N. Kiryati and A.M. Bruckstein. On navigating between friends and foes. IEEE Transactions on Pattern Analysis and Machine Intelligence, 13(6):602-606, June 1991. |
[1234] | N. Kiryati and A.M. Bruckstein. What 's in a set of points? IEEE Transactions on Pattern Analysis and Machine Intelligence, 14(4):496-500, April 1992. |
[1235] | K. Kishita, H. Sakai, H. Tanaka, H. Saka, K. Kuroda, M. Sakamoto, A. Watabe, and T. Kamnio. Development of an analytical environmental tem system and its application. Journal of Electron Microscopy, 58:331-339, 2009. |
[1236] | C. Kisielowski. Detection of single atoms and buried defects in three dimensions by aberration-corrected electron microscope with 0.5-aa information limit. Microscopy and Microanalysis, 14:469-477, 2008. |
[1237] | C. Kisielowski, C.J.D. Hetherington, Y.C. Wang, R. Kilaas, M.A. O'keefe, and A. Thust. Imaging columns of the light elements carbon,nitrogen and oxygen with sub ångstrom resolution. Ultramicroscopy, 89:243-263, 2001. |
[1238] | L. Kitchen and A. Rosenfeld. Gray-level corner detection. Pattern Recognition Letters, 1(2):95-102, 1982. |
[1239] | J. Kittler and J. Illingworth. Minimum error thresholding. Pattern Recognition, 19(1):41-47, 1986. |
[1240] | T. A. Klar, M. Dyba, and S.W. Hell. Stimulated emission depletion microscopy with an offset depleting beam. Applied Physics Letters, 78(4):393-395, 2001. |
[1241] | J.-C. Klein and J. Serra. The texture analyzer. Journal of Microscopy, 95(2):349-356, 1972. |
[1242] | Benno Klotzek. Einführung in die Differentialgeometrie. Verlag Harri Deutsch, Thun, Frankfurt am Main, 1994. |
[1243] | P. Kner, B.B. Chhun, E.R. Griffs, L. Winoto, and M.G.L. Gustafsson. Super-resolution video microscopy of live cells by structured illumination. Nature Methods, 6(5):339-344, 2009. |
[1244] | T.P.J. Knowles, D.A. White, A.A. Abate, J.J. Agresti, S.I.A. Cohen, R.A. Sperling, E.J. de Genst, C.M. Dobson, and D.A. Weitz. Observation of spatial propagation of amyloid assembly from single nuclei. Proceedings of the National Academy of Science USA, 108(36):14746-14751, 2011. |
[1245] | D.E. Knuth. Digital halftones by dot diffusion. ACM Transactions on Graphics, 6(4):245-273, October 1987. |
[1246] | H. Knutsson. Filtering and Reconstruction in Image Processing. PhD thesis, Linköping University, Linköping, Sweden, 1982. |
[1247] | H. Knutsson. Producing a continuous and distance preserving 5-d vector representation of 3-d orientation. In IEEE Computer Society Workshop on Computer Architecture for Pattern Analysis and Image Database Management, pages 175-182. Miami Beach, Florida, November 18-20 1985. |
[1248] | H. Knutsson. A tensor representation of 3-d structure. In 5th IEEE-ASSP and EURASIP Workshop on Multidimensional Signal Processing, Noorwijkerhoudt, Netherlands, September 1987. |
[1249] | H. Knutsson. Representing local structure using tensors. In The 6th Scandinavian Conference on Image Analysis, pages 244-251, Oulu, Finland, June 19-22 1989. |
[1250] | H. Knutsson. Representing local structure using tensors. In SCIA'89, pages 244-251, 1989. |
[1251] | H. Knutsson and M. Anderson. Loglets: Generalized quadrature and phase for local spatio-temporal structure estimation. In J. Bigün and T. Gustavsson, editors, SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis (Göteborg, Sweden), LNCS 2749, pages 741-748, Berlin, June 29 -July 2 2003. Springer-Verlag. |
[1252] | H. Knutsson and M.T. Andersson. Robust n-dimensional orientation estimation using quadrature filters and tensor whitening. Technical report, Linköping University, Sweden, 1995. LiTH-ISY-R-1798. |
[1253] | H. Knutsson and G. H. Granlund. Fourier domain design of line and edge detectors. In Proceedings of the 5th International Conference on Pattern Recognition, Miami, Florida, December 1980. |
[1254] | H. Knutsson and G.H. Granlund. Texture analysis using two-dimensional quadrature filters. In IEEE Computer Society Workshop on Computer Architecture for Pattern Analysis and Image Database Management, Pasadena, October 1983. |
[1255] | H. Knutsson, L. Haglund, and H. Bårman. A tensor based approach to structure analysis and enhancement in 2D, 3D and 4D. In Workshop Program, Seventh Workshop on Multidimensional Signal Processing, Lake Placid, New York, USA, September 1991. IEEE Signal Processing Society. |
[1256] | H. Knutsson and C.-F. Westin. Normalized convolution - a technique for filtering incomplete and uncertain data. In K. A. Høgda, B. Braathen, and K. Heia, editors, SCIA'93, Proceedings of the 8th Scandinavian Conference on Image Analysis, volume 2, pages 997-1006, Tromsø Norway, 1993. Norwegian Society for Image Processing and Pattern Recognition. |
[1257] | H. Knutsson, C.-F. Westin, and M. Andersson. Representing local structure using tensors II. In A. Heyden and F. Kahl, editors, Image Analysis, Lecture Notes in Computer Science 6688, pages 545-556, Heidelberg, 2011. Springer. |
[1258] | H. Knutsson, R. Wilson, and G.H. Granlund. Anisotropic filtering controlled by image content. In Proceedings of the 2nd Scandinavian Conference on Image Analysis (Finland), 1981. |
[1259] | H. Knutsson, R. Wilson, and G.H. Granlund. Anisotropic non-stationary image estimation and its applications - Part I: Restoration of noisy images. IEEE Transactions on Communications, 31(3):388-397, March 1983. Report LiTH-ISY-I-0462, Linköping University, Sweden, 1981. |
[1260] | H. Knutsson, R. Wilson, and G.H. Granlund. Anisotropic non-stationary image estimation and its applications - Part II: Predictive image coding. IEEE Transactions on Communications, 31(3):398-406, March 1983. |
[1261] | H. Knutsson, R. G. Wilson, and G. H. Granlund. Anisotropic filtering operations for image enhancement and their relation to the visual system. In Proceedings of IEEE Computer Society Conference on Pattern Recognition and Image Processing, Dallas, Texas, August 1981. |
[1262] | J.J. Koenderink. The structure of images. Biological Cybernetics, 50:363-370, 1984. |
[1263] | J.J. Koenderink. Image structure. NATO ASI Series, vol. F39, Mathematics and Computer Science in Medical Imaging, Springer-Verlag, 1988. |
[1264] | J.J. Koenderink and A.J. van Doorn. Representation of local geometry in the visual system. Biological Cybernetics, 55:367-375, 1987. |
[1265] | J.J. Koenderink and A.J. van Doorn. Receptive field families. Biological Cybernetics, 63:291-297, 1990. |
[1266] | J.J. Koenderink and A.J. van Doorn. Generic neighborhood operators. IEEE Transactions on Pattern Analysis and Machine Intelligence, 14(6):597-605, June 1992. |
[1267] | J.J. Koenderink and A.J. van Doorn. Second-order optic flow. Journal of the Optical Society of America A, 9(4):530-538, 1992. |
[1268] | J.J. Koenderink and A.J. van Doorn. Surface shape and curvature scales. Image and Vision Computing, 10(8):557-565, 1992. |
[1269] | J.J. Koenderink and A.J. van Doorn. The structure of locally orderless images. International Journal of Computer Vision, 31(2/3):159-168, 1999. |
[1270] | J.J. Koenderink and A.J. van Doorn. Image processing done right. In A. Heyden, editor, Proceedings of the ECCV 2002, volume 2350 of Lecture Notes in Computer Science, pages 158-172. Springer-Verlag, 2002. |
[1271] | J.J. Koenderink and W. Richards. Two-dimensional curvature operators. Journal of the Optical Society of America A, 5(7):1136-1141, July 1988. |
[1272] | H. Kohl and H. Rose. Theory of image formation by inelastically scattered electrons in the electron microscope. Advances in Electronics and Electron Physics, 65:173-224, 1985. |
[1273] | S. Köhler, V. Schaller, and A.R. Bausch. Structure formation in active networks. Nature Materials, 10:462-468, 2011. |
[1274] | T. Kohonen. Self-Organizing Maps, volume 30 of Springer Series in Information Sciences. Springer-Verlag, 1995. |
[1275] | T. Kohonen. Self-Organizing Maps, volume 30 of Springer Series in Information Sciences, chapter 5.8-5.10. Springer-Verlag, 1995. |
[1276] | J. Komenda. Automatic recognition of complex microstructures using the image classifier. Materials Characterization, 46(2-3):87-92, 2001. |
[1277] | B.G. Kopek, G. Shtengel, C. Shan Xu, D.A. Clayton, and H.F. Hess. Correlative 3d superresolution fluorescence and electron microscopy reveal the relationship of mitochondrial nucleoids to membranes. Proceedings of the National Academy of Science USA, 109(16):6136-6141, 2012. |
[1278] | P. Kornprobst, S. Sand, R. Deriche, and G. Aubert. Image sequence analysis via partial differential equations. Journal of Mathematical Imaging and Vision, 11:5-26, 1999. |
[1279] | A.J. Koster, A. van den Bos, and K.D. van der Mast. An autofocus method for a TEM. Ultramicroscopy, 21:209-222, 1987. |
[1280] | G. Kothleitner and F. Hofer. Optimization of the signal to noise ratio in EFTEM elemental maps with regard to different eonization edge types. Micron, 29(5):349-357, 1998. |
[1281] | G. Kothleitner and F. Hofer. EELS performance measurements on a new high energy resolution imaging filter. Micron, 34:211-218, 2003. |
[1282] | G. Kothleitner, C. Mitterbauer, W. Grogger, H. Zandbergen, P.C. Tiemeijer, B. Freitag, M. Barfels, and F. Hofer. First applications of electron energy-loss spectroscopy with high energy resolution. In Mat. Res. Soc. Symp. Proc., volume 738, pages 27-32, 2003. |
[1283] | P. G. Kotula, M. R. Keenan, and J. R. Michael. Automated analysis of sem x-ray spectral images: a powerful new microanalysis tool. Microscopy and Microanalysis, 9:1-17, 2004. |
[1284] | B.P. Kouskousis, Embden J. van, D. Morrish, S.M. Russell, and M. Gu. Super-resolution imaging and statistical analysis of CdSe/CdS core/shell semiconductor nanocrystals. Journal of Biophotonics, 3(7):437-445, 2010. |
[1285] | M.A. Kraaijveld and W.J.M. Epping. Harnessing advanced image analysis technology for quantitative core and borehole image interpretation. In proceedings of the 41st SPWLA annual symposium, Dallas, page paper VV, June 4-7 2000. |
[1286] | A.M. Kram, G.T. Oostergetel, and E.F.J. van Bruggen. Localization of branching enzyme in potato tuber cells with the use of immunoelectron microscopy. Plant Physiology, 101:237-243, 1993. |
[1287] | O. Kratky and G. Porod. Röntgenuntersuchungen gelöster Fadenmoleküle. Rec. Trav. Chim. Pays-Bas Belg, 68:1106-1124, 1949. |
[1288] | A. Kress, P. Ferrand, H. Rigneault, T. Trombik, H.-T. He, D. Marguet, and S. Brasselet. Probing orientational behvior of MHC class I protein and lipid probes in cell membranes by fluorescence polarization-resolved imaging. Biophysical Journal, 101:468-476, 2011. |
[1289] | G. Krieger and C. Zetzsche. Nonlinear image operators for the evaluation of local intrinsic dimensionality. IEEE Transactions on Image Processing, 5(6):1026-1042, June 1996. |
[1290] | O.L. Krivanek, G.K. Corbin, N. Dellby, B.F. Elston, R.J. Keyse, M.F. Murfitt, C.S. Own, Z.S. Szilagyi, and J.W. Woodruff. An electron microscope for the aberration-corrected era. Ultramicroscopy, 108:179-195, 2008. |
[1291] | O.L. Krivanek, N. Delby, R.J. keyse, M.F. Murfitt, C.S. Own, and Z.S. Szilagyi. Advances in aberration-corrected scanning transmission electron microscopy and electron energy-loss spectroscopy. Advances in Imaging and Electron Physics, 153:121-160, 2008. |
[1292] | O.L. Krivanek, N. Delby, R.J. Keyse, M.F. Murfitt, C.S. Own, and Z.S. Szilagyi. Advances in Imaging and Electron Physics, volume 153, chapter Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy, pages 121-160. Elsevier, 2010. |
[1293] | O.L. Krivanek, N. Dellby, and A.R. Lupini. Towards sub- electron beams. Ultramicroscopy, 78:1-11, 1999. |
[1294] | O.L. Krivanek, N. Dellby, and A.R. Lupini. Autoadjusting charged-particle probe-forming apparatus. EP application number: 01308443.9, 2001. pending. |
[1295] | O.L. Krivanek, N. Dellby, and A.R. Lupini. Autoadjusting charged-particle probe-forming apparatus. EP1197986, 2002. |
[1296] | O.L. Krivanek, N. Dellby, and A.R. Lupini. Autoadjusting charged-particle probe-forming apparatus. US6552340, 2003. |
[1297] | O.L. Krivanek, A.J. Gubbens, and N. Dellby. Developments in eels instrumentation for spectroscopy and imaging. Mirosc. Mircoanal. Microstruct, 2:315-332, 1999. |
[1298] | O.L. Krivanek, J.P. Ursin, N.J. Bacon, G.J. Corbin, N. Delby, P. Hrncirik, M.F. Murfitt, C.S. Own, and Z.S. Szilagyi. High-energy resolution monochromator for aberration-corrected scanning transmission electron microscopy/electron energy-loss spectroscopy. Philosophical Transactions of the Royal Society, 367:3683-3697, 2009. |
[1299] | P. Krizek, I. Raska, and G.M Hagen. Minimizing detection errors in single molecule localization microscopy. Optics Express, 19(4):3226-3235, 2011. |
[1300] | P. Krizek, I. Raska, and G.M. Hagen. Flexible structured illumination microscope with a programmable illumination array. Optics Express, 20(22):24585-24589, 2013. |
[1301] | B. Kromann, T.J. Gould, M.F. Juette, J.E. Wilhjelm, and J. Bewersdorf. Quantitative pupil analysis in stimulated emission depletion microscopy using phase retrieval. Optics Letters, 37(11):1805-1807, 2012. |
[1302] | J.P. Kroustrup, H.J.G. Gundersen, and M. V, h. Stereological analysis of three-dimensional structure organization of surfaces in multiphase specimens: Statistical methods and model-inferences. Journal of Microscopy, 149, Pt 2:135-152, February 1988. |
[1303] | A. Krysting, P.M. Bendix, D.G. Stamou, and L.B. Oddershede. Heat profiling of three-dimensionally optically trapped gold nanoparticles using vesicle cargo release. Nano Letters, 11:888-892, 2011. |
[1304] | P. Kube and P. Perona. Scale-space properties of quadratic feature detectors. IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(10):987-999, October 1996. |
[1305] | C. Kübel, A. Voigt, R. Schoenmakers, M. Otten, D. Su, T.-C. Lee, A. Carlsson, and J. Bradley. Recent advances in electron tomography: TEM and HAADF-STEM tomography for materials science and semiconductor applications. Microscopy and Microanalysis, 11(5):378-400, 2005. |
[1306] | L. Kubinova and J. Janacek. Confocal microscopy and stereology: Estimating volume, number, surface area and length by virtual test probes applied to three-dimensional images. Microscopy Research and Technique, 53(6):425-435, 2001. |
[1307] | U. Kubitscheck. Single protein molecules visualized and tracked in the interior of eukaryotic cells. Single Molecule, 3(5-6):267-274, 2002. |
[1308] | U. Kubitscheck, D. Grünwald, A. Hoekstra, D. Rohleder, T. Kues, J.P. Siebrasse, and R. Peters. Nuclear transport of single molecules: dwell times at the nuclear pore complex. Journal of Cell Biology, 168(2):233-243, 2005. |
[1309] | U. Kubitscheck, O. Kückmann, T. Kues, and R. Peters. Imaging and tracking of single GFP molecules in solution. Biophysical Journal, 78:2170-2179, April 2000. |
[1310] | T. Kues and U. Kubitscheck. Single molecule motion perpendicular to the focal plane of a microscope: Application to splicing factor dynamics within the cell nucleus. Single Molecule, 3(4):218-224, 2002. |
[1311] | T. Kues, R. Peters, and U. Kubitscheck. Visualization and tracking of single protein molecules in the cell nucleus. Biophysical Journal, 80(6):2954-2967, 2001. |
[1312] | S. Kujawa and D. Krahl. Performance of a low-noise ccd camera adapted to a transmission electron microscope. Ultramicrosopy, 46:395-403, 1992. |
[1313] | S. Kujawa, D. Krahl, H. Niedrig, and E. Zeitler. Second-rank aberrations of a magnetic imaging energy filter: measurement and correction. Optik, 86:39-46, 1990. |
[1314] | D. Kundur and D. Hatzinakos. Blind image deconvolution. IEEE Signal Processing Magazine, 13(3):43-64, May 1996. |
[1315] | E.R.S. Kunji, E.N. Spudich, R. Grisshammer, R. Henderson, and J.L. Spudich. Electron crystallographic analysis of two-twodimensional crystals of sensory rhodopsin ii:a 6.9 å projection structure. Journal of Molecular Biology, 308:279-293, 2001. |
[1316] | M. Kuno, D. P. Fromm, H. F. Hamann, A. Gallagher, and D. J. Nesbitt. "on"/"off" fluorescence intermittency of single semiconductor quantum dots. Journal of Chemical Physics, 115(2):1028-1040, 2001. |
[1317] | M.B. Kurdy and D. Jeulin. Directional mathematical morphology operations. Acta. Stereology, 8(2):473-480, 1989. |
[1318] | K. Kurmochi, T. Yamazaki, Y. Kotaka, Y. Kikuchi, I. Hashimoto, and K. Watanabe. Measurement of twofold astigmatism of probe-forming lens using low-order zone-axis ronchigram. Ultramicroscopy, 108:339-345, 2008. |
[1319] | K. Kurmochi, T. Yamazaki, Y. Kotaka, M. Ohtsuka, I. Hashimoto, and K. Watanabe. Effect of chromatic aberration on atomic-resolved spherical aberration corrected stem images. Ultramicroscopy, 110:36-42, 2009. |
[1320] | A. Kurz, M. Schwering, and D.-P. Herten. Quantification of fluorescent samples by photon-antibunching. In J. Enderlein, Z. Karol, R. Erdmann, F. Koberling, and I. Gregor, editors, Single Molecule Spectroscopy and Superresolution Imaging V, SPIE, pages 82280K-1, 2012. |
[1321] | A. Kusumi, Y. Sako, and M. Yamamoto. Confined lateral diffusion of membrane receptors as studied by single particle tracking (nanovid microscopy). Biophysical Journal, 65:2021-2040, 1993. |
[1322] | R. Kutka and S. Stier. Extraction of line properties based on direction fields. IEEE Transactions on Medical Imaging, 15(1):51-58, February 1996. |
[1323] | M. Kuwahara, K. Hachimura, S. Eiho, and M. Kinoshita. Processing of ri-angiocardiographic images. Digital Processing of Biomedical Images, pages 187-203, 1976. |
[1324] | M. Kuwahara, K. Hachimura, and M. Kinoshita. Image enhancement and left ventricular contour extraction techniques applied to radioisotope angiocardiograms. Audiomedica, 3:107-119, 1980. |
[1325] | O.-H. Kwon and A.H. Zewail. 4d electron tomography. Science, (328):1668-1673, 2010. |
[1326] | J. Kybic, T. Blu, and M. Unser. Generalized sampling: A variational approach - part i: Theory. IEEE Transactions on Signal Processing, 50(8):1965-1976, 2002. |
[1327] | J. Kybic, T. Blu, and M. Unser. Generalized sampling: A variational approach - part II: Applications. IEEE Transactions on Signal Processing, 50(8):1977-1985, 2002. |
[1328] | Material Science Division Argonne National Laboratory. Technical report, 2000. |
[1329] | A.J. Lacey, N.A. Thacker, S. Crossley, and R.B. Yates. A multi-stage approach to the dense estimation of disparity from stereo SEM images. Image and Vision Computing, 16(5):373-383, 1998. |
[1330] | A.J. Lacey, N.A. Thacker, and R.B. Yates. Surface approximation from industrial SEM images. In Proceedings of the British Machine Vision Conference, Edinburgh, Scotland, 1996. University of Edinburgh. |
[1331] | E. Lachmanovich, D.E. Shvartsman, Y. Malka, C. Botvin, Y.I. Henis, and A.M. Weiss. Co-localization analysis of complex formation among membrane proteins by computerized fluorescence microscopy: application to immunofluorescence co-patching studies. Journal of Microscopy, 212(2):122-131, November 2003. |
[1332] | B.C. Lagerholm, L. Averett, G.E. Weinreb, K. Jacobson, and N.L. Thompson. Analysis method for measuring submicroscopic distances with blinking quantum dots. Biophysical Journal, 91(10):3050-3060, 2006. |
[1333] | Jolanta B. Lagowski, Jaan Noolandi, and Bernie Nickel. Stiff chain model-functional integral approach. Journal of Chemical Physics, 95(2):1266-1296, 1991. |
[1334] | J.M. Lahtinen, T. Hjelt, T. Ala-Nissila, and Z. Chvoj. Diffusion of hard disks and rodlike molecules on surfaces. Physical Review E, 64, 2001. |
[1335] | J.R. Lakowicz. Principles of Fluorescence Spectroscopy. Kluwer Academic Press, New York, 2nd edition, 1999. |
[1336] | A. Lambacher and P. Fromherz. Fluorescence interference-contrast microscopy on oxidized silicon using a monomolecular dye layer. Applied Physics A, 63(3):207-216, 1996. |
[1337] | Meredith Newby Lambert, Eva Vöcker, Seth Blumberg, Stefanie Redemann, Arivalagan Gajraj, Jens-Christian Meiners, and Nils. G. Walter. Mg2+-Induced Compaction of Single RNA Molecules Monitored by Tethered Particle Microscopy. Biophysical Journal, 90:3672-3685, 2006. |
[1338] | P. Lambert and L. Macaire. Filtering and segmentation: the specificity of color images. In International Conference on Color in Graphics and Image Processing CGIP'2000, 2000. |
[1339] | A. Lampe, V. Haucke, S.J. Sigrist, M. Heilemann, and J. Schmoranzer. Multi-colour direct STORM with red emitting carbocyanines. Biology of the Cell, 104:1-9, 2012. |
[1340] | H. Landau. Necessary density conditions for sampling and interpolation of certain entire function. Acta Mathematica, 117(1):37-52, 1967. |
[1341] | L.D. Landau and E.M. Lifshitz. Theory of Elasticity. Pergamon Press, first edition, 1959. |
[1342] | L.D. Landau and E.M. Lifshitz. Statistical Physics, Part 1. Pergamon Press, second edition, 1969. |
[1343] | L.D. Landau and E.M. Lifshitz. Statistical Physics, Part 1. Butterworth-Heinemann, third edition, 1999. |
[1344] | D. Lando, U. Endesfelder, H. Berger, L. Subramanian, P.D. Dunne, J. McColl, D. Klenerman, A.M. Carr, M. Sauer, R. Allshire, M. Heilemann, and E.D. Laue. Quantitative single-molecule microscopy reveals that cenp-acnp1 deposition occurs during g2 in fission yeast. Open Biology, 2:120078, 2012. |
[1345] | A. Landström, F. Nellros, H. Jonsson, and M. Thurley. Image reconstruction by prioritized incremental normalized convolution. In A. Heyden and F. Kahl, editors, Image Analysis, Lecture Notes in Computer Science 6688, pages 176-185, Heidelberg, 2011. Springer. |
[1346] | S. Lanzavecchia, F. Cantele, P.L. Bellon, L. Zampighi, M. Kreman, E. Wrigth, and G.A. Zampighi. Conical tomography of freeze-fracture replicas: a method for the study of integral membrane proteins inserted in phospholipid bilayers. Journal of Structural Biology, 149:87-98, 2005. |
[1347] | S. Lanzavecchia, R.H. Wade, A. Ghiretti Magaldi, G. Tognon, and P.L. Bellon. A two-exposure technique for ice-embedded samples successfully reconstructs the chlorocruorin pigment of sabella spallanzanii at 2.1 nm resolution. Journal of Structural Biology, 127:53-63, 1999. |
[1348] | I. Laptev and T. Lindeberg. Interest point detection and scale-selection in space-time. In L.D. Griffin and M. Lillholm, editors, Proceedings of the fourth Int. Conf. on Scale Space, volume 2695 of Lecture Notes on Computer Science, pages 372-387, Isle of Skye, United Kingdom, 2003. |
[1349] | K.G. Larkin. Natural demodulation of two-dimensional fringe patterns. II. stationary phase analysis of the spiral phase quadrature transform. Journal of the Optical Society of America A, 18(8):1871-1881, August 2001. |
[1350] | K.G. Larkin. Uniform estimation of orientation using local and nonlocal 2-D energy operators. Optics Express, 13(20):8097-8121, 2005. |
[1351] | K.G. Larkin, D.J. Bone, and M.A. Oldfield. Natural demodulation of two-dimensional fringe patterns. I. general background of the spiral phase quadrature transform. Journal of the Optical Society of America A, 18(8):1862-1870, August 2001. |
[1352] | F. Larsson and M. Felsberg. Using fourier descriptors and spatial models for traffic sign recognition. In A. Heyden and F. Kahl, editors, Image Analysis, Lecture Notes in Computer Science 6688, pages 238-249, Heidelberg, 2011. Springer. |
[1353] | A. Lasenby and C. Doran. A lecture course in geometric algebra. http://www.mrao.cam.ac.uk/ clifford/ptIIIcourse/course99/, Geometric Algebra Research Group, Cambridge University, 1999. |
[1354] | Niels Laurens, Stuart R. W. Bellamy, August F. Harms, Yana S. Kovacheva, Stephen F. Halford, and Gijs J. L. Wuite. Dissecting protein-induced DNA looping dynamics in real time. Nucleic Acids Research, 2009. |
[1355] | W.M. Lawton. Multidimensional chirp algorithms for computing Fourier transforms. IEEE Transactions on Image Processing, 1(3):429-431, July 1992. |
[1356] | S. Lazar, G.A. Botton, M.-Y. Wu, F.D. Tichelaar, and H.W. Zandbergen. Materials science applications of HREELS in near edge structure analysis and low-energy loss spectroscopy. Ultramicroscopy, 96:533-546, 2003. |
[1357] | S. Lazar, G.A. Botton, and H.W. Zandbergen. Enhancement of resolution in core-loss and low-loss spectroscopy in a monochromated microscope. Ultramicroscopy, 106:1091-1103, 2006. |
[1358] | S. Lazar, C. Hébert, and H.W. Zandbergen. Investigation of hexagonal and cubic GaN by high-resolution electron energy-loss spectroscopy and density functional theory. Ultramicroscopy, 98:249-257, 2004. |
[1359] | S. Lazar, Y. Shao, L. Gunawan, R. Nechache, A. Pignolet, and G.A. Botton. Imaging, core-loss, and low-loss electron-energy-loss spectroscopy mapping in aberration-corrected stem. Microscopy and Microanalysis, 16:1-9, 2010. |
[1360] | S. Leach. Singular value decomposition - a primer. Web download-able. Department of Computer Science, Brown University, Providence, U.S.A. |
[1361] | V.F. Leavers. The dynamic generalized Hough transform. In O. Faugeras, editor, Computer Vision - ECCV90. Proceedings, 1990, pages 592-594. Springer-Verlag, 1990. |
[1362] | V.F. Leavers. Shape Detection in Computer Vision Using the Hough Transform. Springer-Verlag, London, 1992. |
[1363] | V.F. Leavers. Analysis of wear particles using the radon transform. In A. Sanfeliu, J.J. Villanueva, M. Vanrell, R. Alquezar, T. Huang, and J. Serra, editors, ICPR15, Proc. 15th Int. Conference on Pattern Recognition (Barcelona, Spain), pages 764-766. IEEE Computer Society Press, Los Alamitos, September 3-7 2000. |
[1364] | V.F. Leavers. Use of the two-dimensional Radon transform to generate a taxonomy of shape for the characterization of abrasive powder particles. IEEE Transactions on Pattern Analysis and Machine Intelligence, 22(12):1411-1423, December 2000. |
[1365] | B.G. Lee. FCT - a fast cosine transform. In Proc. IEEE ICASSP, pages 28A.3.1-28A.3.4, 1984. |
[1366] | G.M. Lee, A. Ishihara, and K.A. Jacobson. Direct observation of brownian motion of lipids in a membrane. Proceedings of the National Academy of Sciences of the USA, 88(14):6274-6278, July 1991. |
[1367] | J.-S. Lee. Digital image smoothing and the sigma filter. Computer Vision, Graphics, and Image Processing, 24:255-270, 1983. |
[1368] | Kyung-Hoon Lee, Aldo Morales, and Sung-Jea Ko. Adaptive basis matrix for the morphological function processing opening and closing. IEEE Transactions on Image Processing, 6(5):769-774, May 1997. |
[1369] | M.S. Lee and G. Medioni. Grouping ., -, ->, ?, into regions, curves, and junctions. Computer Vision and Image Understanding, 76(1):54-69, October 1999. |
[1370] | N.K. Lee, A.N. Kapanidis, Y. Wang, X. Michalet, J. Mukhopadhyay, R.H. Ebright, and S. Weiss. Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation. Biophysical Journal, 88(4):2939-2953, 2005. |
[1371] | S.-H. Lee and R. Blake. Neural synergy in visual grouping: When good continuation meets common fate. Vision Research, 41(16):2057-2064, July 2001. |
[1372] | S.-H. Lee, J.Y. Shin, A. Lee, and C. Bustamante. Counting single photoactivatable fluorescent molecules by photoactivated localization microscopy (PALM). Proceedings of the National Academy of Sciences USA, 109(43):17436-17441, 2012. |
[1373] | W. de Leeuw. Presentation and Exploration of Flow Data. PhD thesis, Delft University of Technology, The Netherlands, 1997. |
[1374] | S. Lehar. Harmonic resonance in visual perception suggests a novel form of neural communication, 1994. Rejected. Department of Cognitive and Neural Systems, Center for Adaptive Systems, Boston, U.S.A. |
[1375] | M. Lehmann, H. Lichte, D. Geiger, G. Lang, and E. Schweda. Electron holography at atomic dimensions - present state. Materials Characterization, 42:249-263, 1999. |
[1376] | T.M. Lehmann, A. Kaser, and R. Repges. A simple parametric equation for pseudocoloring grey scale images keeping their original brightness progression. Image and Vision Computing, 15:251-257, 1997. |
[1377] | K.N. Leibovic (ed). Science of Vision. Springer-Verlag, 1990. |
[1378] | A.P. Leis, M. Beck, M. Gruska, C. Best, R. Hegerl, W. Baumeister, and J.W. Leis. The essential role of digital signal processing in automated tomography. IEEE Signal Processing Magazine, 23(3):95-103, 2006. |
[1379] | B. Lencova, M. Lenc, and P.W. Hawkes. A pitfall in the calculation of higher order aberrations. Ultramicroscopy, 108:737-740, 2008. |
[1380] | M. Lentzen. The tuning of a Zernike phase plate with defocus and variable spherical aberration and its use in HRTEM imaging. Ultramicroscopy, 99:211-220, 2004. |
[1381] | M. Lentzen, B. Jahnen, C.L. Jia, A. Thust, K. Tillmann, and K. Urban. High-resolution imaging with an aberration-corrected transmission electron microscope. Ultramicroscopy, 92:233-242, 2002. |
[1382] | R. Lenz. Optimal filters for the detection of linear patterns in 2-D and higher dimensional images. Pattern Recognition, 20(2):163-172, 1987. |
[1383] | R. Lenz. Rotation-invariant operators and scale-space filtering. Pattern Recognition Letters, 6:151-154, 1987. |
[1384] | R. Lenz. Group Theoretical Methods in Image Processing. Springer-Verlag, 1990. |
[1385] | A. Leonardis and R. Bajcsy. Finding parametric curves in an image. In G. Sandini, editor, Second European Conference on Computer Vision, Lecture Notes in Computer Science 588, pages 653-657, Santa Margherita Ligure, Italy, May 1992. Springer. |
[1386] | K. Lepinay, F. Lorut, R. Pantel, and T. Epicier. Chemical 3d tomography of 28 nm high k metal gate transistor: STEM XEDS experimental method and results. Micron, 47:43-49, 2013. |
[1387] | T. Leung and J. Malik. Contour continuity in region based image segmentation. In 5th. Euro. Conf. Computer Vision, Freiburg, Germany, June 1998. |
[1388] | Y. Leung, J.S. Zhang, and Z.B. Xu. Clustering by scale-space filtering. IEEE Transactions on Pattern Analysis and Machine Intelligence, 22(12):1396-1410, December 2000. |
[1389] | M.E. Leunissen and D. Frenkel. Numerical study of DNA-functionalized microparticles and nanoparticles: Explicit pair potentials and their implications for phase behavior. Journal of Chemical Physics, 134:084702, 2011. |
[1390] | F. Levert, A. Cassany, M. Kann, and J.-B. Sibarita. Automatic non-parametric capsid segmentation using wavelets transform and graph. In IEEE International Symposium on Biomedical Imaging, Barcelona, Spain, May 2-5 2012. IEEE. |
[1391] | G. Levi and U. Montanari. A grey-weighted skeleton. Information and Control, 17(1):62-91, August 1970. |
[1392] | V. Levi, Q.Q. Ruan, and E. Grattown. 3-D particle tracking in a two-photon microscope: Application to the study of molecular dynamics in cells. Biophysical Journal, 88(4):2919-2929, 2005. |
[1393] | P. Levitz. Evaluation of 3d structural properties of porous materials from 2d sections: Morphology and chord length distribution functions. www. |
[1394] | M. Levoy, Z. Zhang, and I. Mcdowall. Recording and controlling the 4D light field in a microscope using microlens arrays. Journal of Microscopy, 235(2):144-162, 2009. |
[1395] | A. Lewis, R. Felberbaum, and M. Hochstrasser. A nuclear envelope protein linking nuclear pore basket assembly, SUMO protease regulation, and mRNA surveillance. Journal of Cell Biology, 178:813-827, 2007. |
[1396] | B.C. Li and S.D. Ma. Approximation of an arbitrary filter and its recursive implementation. Pattern Recognition, 27(12):1767-1774, 1994. |
[1397] | H. Li and A.M. Vossepoel. Generation of the Euclidean skeleton by a bisector decision rule on a two-shortest-vector distance map. In H.J.A.M. Heijmans and J.B.T.M. Roerdink, editors, Mathematical Morphology and its Applications to Image and Signal Processing, volume 12 of Computational Imaging and Vision, pages 151-158. Kluwer, Dordrecht, 1998. |
[1398] | Jinyu Li, Philip C. Nelson, and M.D. Betterton. DNA entropic elasticity for short molecules attached to beads. PhD thesis, 2006. |
[1399] | Q. Li, R. Han, X. Meng, H. Gai, and E.S. Yeung. Tracking single quantum dot and its spectrum in free solution with controllable thermal diffusion suppression. Analytical Biochemistry, 277:176-181, 2008. |
[1400] | Q. Li, A. Lau, T.J. Morris, L. Guo, C.B. Fordyce, and E.F. Stanley. A syntaxin 1, gα0, and n-type calcium channel complex at a presynaptic nerve terminal: Analysis by quantitative immunocolocalization. Journal of Neuroscience, 24(16):4070-4081, 2004. |
[1401] | T. Li, S. Kheifets, D. Medellin, and M.G. Raizen. Measurement of the instantaneous velocity of a brownian particle. Science, 328:1673-1676, 2010. |
[1402] | W. Li and W. Leung. A maximum likelihood approach for image registration using control point and intensity. IEEE Transactions on Image Processing, 13(8):1115-1127, 2004. |
[1403] | X. Li and T. Chen. Nonlinear diffusion with multiple edginess thresholds. Pattern Recognition, 27(8):1029-1037, 1994. |
[1404] | X. Li, P. Mooney, C.R. Zheng, S.and Booth, M.B. Braunfeld, S. Gubbens, D.A. Agard, and C. Yifan. Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM. Nature Methods, 10(6):584-590, 2013. |
[1405] | Y. Liang, E.Y. Ke, and Z.H. Zhou. IMIRS: a high-resolution 3d reconstruction pachage integrated with a relational image database. Journal of Structural Biology, 137:292-304, 2002. |
[1406] | H.Y. Liao and J. Frank. Definition and estimation of resolution in single-particle reconstructions. Structure, 18(7):768-775, July 2010. |
[1407] | H. Lichte. Electron holography approaching atomic resolution. Ultramicroscopy, 20:293-304, 1986. |
[1408] | H. Lichte. Parameters for gih-resolution electron holography. Ultramicroscopy, 51:15-20, 1993. |
[1409] | H. Lichte. Electron holography: optimum position of the biprism in the electron microscope. Ultramicroscopy, 64:89-109, 1996. |
[1410] | H. Lichte. Performance limits of electron holography. Ultramicroscopy, 108:256-262, 2007. |
[1411] | H. Lichte, D. Geiger, A. Harscher, E. Heindl, M. Lehman, D. Malamidis, A. Orchowski, and W.-D. Rau. Artefacts in electron holography. Ultramicroscopy, 64:67-77, 1996. |
[1412] | H. Lichte and M. Lehmann. Electron holography - basics and applications. Reports on Progress in Physics, pages 1-43, 2008. |
[1413] | D.R. Lide, editor. Handbook of Chemistry and Physics. CRC Press, 60th edition, 1980. |
[1414] | D.R. Lide, editor. Handbook of Chemistry and Physics. CRC Press, 82th edition, 1992. |
[1415] | D. S. Lidke, N. L. Andrews, J. R. Pfeiffer, H. D. T. Jones, M. B. Sinclair, D. M Haaland, A. R. Burns, B. S. Wilson, Oliver. J. M., and K. A. Lidke. Exploring membrane protein dynamics by multicolor single quantum dot imaging using wide field, tirf, and hyperspectral microscopy. Proc. of SPIE, 6448:6448Y1-8, 2007. |
[1416] | D.S. Lidke, F. Huang, J.N. Post, B. Rieger, J. Thomas, J.L.and Pouyssegur, T.M. Jovin, and P. Lenormand. ERK nuclear translocation is dimerization-independent but controlled by the rate of phosphorylation. Journal of Biological Chemistry, 285:3092-3102, 2010. |
[1417] | D.S. Lidke, K.A. Lidke, B. Rieger, T.M. Jovin, and D.J. Arndt-Jovin. Reaching out for signals: filopodia sense EGF and respond by directed retrograde transport of activated receptors. Journal of Cell Biology, 170:619-626, 2005. |
[1418] | D.S. Lidke, P. Nagy, B.G. Barisas, R. Heintzmann, J.N. Post, K.A. Lidke, A.H.A. Clayton, D.J. Arndt-Jovin, and T.M. Jovin. Imaging molecular interactions in cells by dynamic and static fluorescence anisotropy (rFLIM and emFRET). Biochemical Society Transactions, 31(5):1020-1027, 2003. |
[1419] | D.S. Lidke, P. Nagy, R. Heintzmann, D.J. Arndt-Jovin, J.N. Post, H. Grecco, E.A. Jares-Erijman, and T.M. Jovin. Quantum dot ligands provide new insights into erbB/HER receptor-mediated signal transduction. Nature Biotechnology, 22(2):198-203, 2004. |
[1420] | K. A. Lidke and R. Heintzmann. Localization fluorescence microscopy using quantum dot blinking. In 4th IEEE International Symposium on Biomedical Imaging, pages 936-939, Metro Washington DC, USA., 2007. |
[1421] | K.A. Lidke, B. Rieger, T.M. Jovin, and R. Heintzmann. Superresolution by localization of quantum dots using blinking statistics. Optics Express, 13(18):7052-7062, 2005. |
[1422] | K.A. Lidke, B. Rieger, D.S. Lidke, and T.M. Jovin. The role of photon statistics in fluorescence anisotropy imaging. IEEE Transactions on Image Processing, 14(9):1237-1245, 2005. |
[1423] | M.N.M. van Lieshout. Size distributions in stochastic geometry. Technical report, CWI, Amsterdam, 1997. PNA-R9715. |
[1424] | L.M. Lifshitz and S.M. Pizer. A multiresolution hierarchical approach to image segmentation based on intensity extrema. IEEE Transactions on Pattern Analysis and Machine Intelligence, 12(6):529-540, June 1990. |
[1425] | C.L. Lin and J.D. Miller. Pore structure and network analysis of filter cake. Chemical Engineering Journal, 80, 221-231 2000. |
[1426] | J.A. Lin and J.M. Cowley. Calibration of the operating parameters for an HB5 STEM instrument. Ultramicroscopy, 19:31-42, 1986. |
[1427] | Q. Lin. Enhancement, Extraction, and Visualization of 3D Volume Data. PhD thesis, Linköping University, Sweden, 2003. |
[1428] | T. Lin, Z. Chen, R. Usha, C.V. Stauffacher, J.-B. Dai, T. Schmidt, and J.E. Johnson. The refined crystal structure of cowpea mosaic virus at 2.8 resolution. Virology, 265:20-34, 1999. |
[1429] | S. van de Linde, S. Wolter, M. Heilemann, and M. Sauer. The effect of photoswitching kinetics and labeling densities on super-resolution fluorescence imaging. Journal of Biotechnology, 149:260-266, 2010. [ http ] |
[1430] | T. Lindeberg. Scale-space for discrete signals. IEEE Transactions on Pattern Analysis and Machine Intelligence, 12(3):234-254, 1990. |
[1431] | T. Lindeberg. Discrete Scale-Space Theory and the Scale-Space Primal Sketch. PhD thesis, Royal Institute of Technology Stockholm, Sweden, 1991. |
[1432] | T. Lindeberg. Discrete derivative approximations with scale-space properties: A basis for low-level feature extraction. Journal of Mathematical Imaging and Vision, 3:349-376, 1993. |
[1433] | T. Lindeberg. On scale selection for differential operators. In Proc. 8th Scandinavian Conference on Image Analysis (Tromsø Norway), pages 857-866, May 1993. |
[1434] | T. Lindeberg. Scale-space theory: A basic tool for analyzing structures at different scales. Journal of Applied Statistics, 21(2):224-270, 1994. |
[1435] | T. Lindeberg. Scale-Space Theory in Computer Vision. Kluwer, 1994. |
[1436] | T. Lindeberg. Edge detection and ridge detection with automatic scale selection. International Journal of Computer Vision, 30(2):117-154, 1998. |
[1437] | T. Lindeberg. Feature detection with automatic scale selection. International Journal of Computer Vision, 30(2):79-116, 1998. |
[1438] | T. Lindeberg. Principles for automatic scale selection. Technical Report ISRN KTH/NA/P-98/14-SE, Computational Vision and Active Perception Laboratory, Royal Institute of Technology, Stockholm, Sweden, August 1998. |
[1439] | T. Lindeberg. Generalized axiomatic scale-space theory. In Advances in Imaging and Electron Physics, Volume 178, pages 1-96. 2013. |
[1440] | T. Lindeberg and J. Gårding. Shape from texture from a multi-scale perspective. In Proceeding of the 4th International Conference on Computer Vision, Berlin, Germany, 1993. |
[1441] | S. Lindek and E.H.K. Stelzer. Optical transfer functions for confocal theta fluorescence microscopy. Journal of the Optical Society of America A, 13(3):479-482, 1996. |
[1442] | M. Lindenbaum, M. Fischer, and A. Bruckstein. On Gabor's contribution to image enhancement. Pattern Recognition, 27(1):1-8, 1993. |
[1443] | M. Lindner, G. Nir, S. Medalion, H.R.C. Dietrich, Y. Rabin, and Y. Garini. Force-free measurements of the conformations of DNA molecules tethered to a wall. Physical Review E, 83:011916, 2011. |
[1444] | Moshe Lindner, Guy Nir, Heidelinde R. C. Dietrich, Ian T. Young, Elad Tauber, I. Bronshtein, Liat Altman, and Yuval Garini. Studies of Single Molecules in their Natural Form. Israel Journal of Chemistry, 49:283-291, 2009. |
[1445] | D. Lingwood and K. Simons. Lipid rafts as a membrane organizing principle. Science, 327:46-53, 2009. |
[1446] | J. Lippincott-Schwartz and S. Manley. Putting super-resolution fluorescence microscopy to work. Nature Methods, 6(1):21, 2009. |
[1447] | S.G. Lipson, H. Lipson, and D.S. Tannhauser. Optical Physics. Cambridge University Press, Cambridge, 3rd edition edition, 2001. |
[1448] | Gang Logan Liu, Yi-Tao Long, Yeonho Choi, Taewook Kang, and Luke P. Lee. Quantized plasmon quenching dips nanospectroscopy via plasmon resonance energy transfer. Nature Methods, 4(12):1015-1017, 2007. |
[1449] | K. Liu, G.A. Schwind, and L.W. Swanson. Off-axis emission properties for the extended schottky electron source. J. Vac. Sci. Technol. B, 27:2547-2552, 2009. |
[1450] | S-C. Liu and S. Chang. Dimension estimation of discrete-time fractional brownian motion with application to image texture classification. IEEE Transaction on Image Processing, 6(8):1176-1184, 1997. |
[1451] | R.F. Loane, P. Xu, and J. Slicox. Thermal vibrations in convergent-beam electron diffraction. Acta Crystallography, A47:267-278, 1991. |
[1452] | R.F. Loane, P. Xu, and J. Slicox. Incoherent imaging of zone axis crystals with ADF STEM. Ultramicroscopy, 40:121-138, 1992. |
[1453] | M.T.J. van Loenhout, J.W.J. Kerssemakers, I. De Vlaminck, and C. Dekker. Non-bias-limited tracking of spherical particles, enabling nanometer resolution at low magnification. Biophysical Journal, 102(10):2362-2371, 2012. |
[1454] | A. Loman, I. Gergor, C. Stutz, M. Mund, and J. Enderlein. Measuring rotational diffusion of macromolecules by fluorescence correlation spectroscopy. Photochem. Photobiol. Sci., 9:627-636, 2010. |
[1455] | S. Loncaric. A survey of shape analysis techniques. Pattern Recognition, 31(8):983-1001, 1998. |
[1456] | A.M. López, D. Lloret, J. Serrat, and J.J. Villanueva. Multilocal creaseness based on the level-set extrinsic curvature. Computer Vision and Image Understanding, 77:111-144, 2000. |
[1457] | A.M. López, F. Lumbreras, J. Serrat, and J.J. Villanueva. Evaluation of methods for ridge and valley detection. IEEE Transactions on Pattern Analysis and Machine Intelligence, 21(4):327-335, April 1999. |
[1458] | C. Lorenz, I.-C. Carlsen, T.M. Buzug, C. Fassnacht, and J. Weese. A multi-scale line filter with automatic scale selection based on the Hessian matrix for medical image segmentation. In B.M. ter Haar Romeny, L. Florack, J.J. Koenderink, and M.A. Viergever, editors, Scale-Space Theory in Computer Vision, First International Conference, volume 1252 of Lecture Notes in Computer Science, pages 152-163, Utrecht, The Netherlands, 1997. Springer. |
[1459] | G.F. Lorusso and D.C. Joy. Experimental resolution measurement in critical dimension scanning electron microscope metrology. Scanning, 25(4):175-180, 2003. |
[1460] | A. Löschberger, S. van de Linde, M.C. Dabauvalle, B. Rieger, M. Heilemann, G. Krohne, and M. Sauer. Super-resolution imaging visualizes the eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution. Journal of Cell Sciences, 125(3):570-575, 2012. |
[1461] | G. Louverdis, M.I. Vardavoulia, I. Andreadis, and Ph. Tsalides. A new approach to morphological color image processing. Pattern Recognition, 35:1733-1741, 2002. |
[1462] | M. Lovell, G. Williamson, and P. Harvey. Borehole imaging: Applications and case histories, Geological Society special publication, no. 159. Geological Society, London, 1999. |
[1463] | S.T. Low-Nam, K.A. Lidke, P.J. Cutler, R.C. Roovers, P.M.P. van Bergen en Henegouwen, B.S. Wilson, and D.S. Lidke. ErbB1 dimerization is promoted by domain co-confinement and stabilized by ligand binding. Nature Structural & Molecular Biology, 18(11):1244-1252, 2011. |
[1464] | D.W. Lozier and F.W.J. Olver. Numerical evaluation of special functions. In W. Gautschi, editor, Mathematics of Computation 1943-1993: A Half-Century of Computational Mathematics, volume 48 of Proceedings of Symposia in Applied Mathematics, pages 79-125. American Mathematical Society, December 1994. http://math.nist.gov/nesf/. |
[1465] | Yongjun Lu, Brock Weers, and Nancy C. Stellwagen. DNA Persistencde Length Revisited. Biopolymers, 61:261-275, 2002. |
[1466] | G.M.R. De Luca, R.M.P. Breedijk, R.A.J. Brandt, C.H.C. Zeelenberg, B.E. de Jong, W. Timmermanns, L.N. Azar, R.A. Hoebe, S. Stallinga, and E.M.M. Manders. Re-scan confocal microscopy: scanning twice for better resolution. Biomedical Optical Express, 4(11):2644-2656, 2013. |
[1467] | B.D. Lucas and T. Kanade. An iterative image registration technique with an application to stereo vision. In P.J. Hayes, editor, Proceedings of the Seventh Int. Conf. on Artificial Intelligence, pages 674-679, Vancouver, B.C., Canada, August 1981. William Kaufmann. |
[1468] | S.J. Ludtke, J. Jakana, J.-L. Song, D.T. Chuang, and W. Chiu. A 11.5 single particle reconstruction of GroEL using EMAN. Journal of Molecular Biology, 314:253-262, 2001. |
[1469] | C. L. Luengo Hendriks, P. Malm, and E. Bengtsson. Medical Image Processing: Techniques and Applications, chapter Rapid prototyping of image analysis applications. Biological and Medical Physics, Biomedical Engineering Series. Springer, 2011. ISBN 978-1-4419-9769-2. |
[1470] | C.L. Luengo Hendriks. Improved resolution in infrared imaging using randomly shifted images. Master's thesis, Pattern Recognition Group, Faculty of Applied Sciences, Delft University of Technology, Delft, 1998. |
[1471] | C.L. Luengo Hendriks. Constrained and dimensionality-independent path openings. IEEE Transactions on Image Processing, 19(6):1587-1595, 2010. |
[1472] | C.L. Luengo Hendriks, M. van Ginkel, P.W. Verbeek, and L.J. van Vliet. The generalized radon transform: Sampling and memory considerations. In N. Petkov and M.A. Westenberg, editors, Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, CAIP 2003, volume 2756 of Lecture Notes on Computer Science, pages 681-688, Berlin, 2003. Springer-Verlag. |
[1473] | C.L. Luengo Hendriks, M. van Ginkel, P.W. Verbeek, and L.J. van Vliet. The generalized radon transform: Sampling, accuracy and memory considerations. Pattern Recognition, 38(12):2494-2505, 2005. |
[1474] | C.L. Luengo Hendriks, M. van Ginkel, and L.J. van Vliet. Underestimation of the radius in the radon transform for circles and spheres. Technical report, Pattern Recognition Group, Delft University of Technology, May 2003. Technical Report PH-2003-02. |
[1475] | C.L. Luengo Hendriks, G.M.P. Kempen, and L.J. van Vliet. Improving the accuracy of isotropic granulometries. Pattern Recognition Letters, 28:865-872, 2007. |
[1476] | C.L. Luengo Hendriks, S.V.E. Keränen, M.D. Biggin, and D.W. Knowles. Automatic channel unmixing for high-throughput quantitative analysis of fluorescence images. Optics Express, 15(19):12306-123117, 2007. |
[1477] | C.L. Luengo Hendriks, B. Rieger, M. van Ginkel, G.M.P. van Kempen, and L.J. van Vliet. DIPimage: a scientific image processing toolbox for MATLAB, 1999-. Delft University of Technology, http://www.qi.tnw.tudelft.nl/DIPlib. |
[1478] | C.L. Luengo Hendriks and L.J. van Vliet. Resolution enhancement of a sequence of undersampled shifted images. In M. Boasson, J.A. Kaandorp, J.F.M. Tonino, and M.G. Vosselman, editors, ASCI'99, Proc. 5th Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands), pages 95-102. ASCI, Delft, 1999. |
[1479] | C.L. Luengo Hendriks and L.J. van Vliet. Improving resolution to reduce aliasing in an undersampled image sequence. In M. M. Blouke, G.M. Williams, N. Sampat, and T. Yeh, editors, Sensors and Camera Systems for Sensors and Camera Systems for Scientific, Industrial, and Digital Photography Applications, volume 3965 of Proc. SPIE Electronic Imaging 2000 Conf., pages 2134-222, San Jose, 2000. |
[1480] | C.L. Luengo Hendriks and L.J. van Vliet. Morphological scale-space to differentiate microstructures of food products. In L.J. van Vliet et al., editor, Proceedings of the third annual conference of the Advanced School for Computing and Imaging (Heijen, the Netherlands), pages 289-293, June 14-16 2000. |
[1481] | C.L. Luengo Hendriks and L.J. van Vliet. A rotation-invariant morphology for shape analysis of anisotropic objects and structures. In C. Arcelli, L.P. Cordella, and G. di Baja Sanniti, editors, Proc. 4th International Workshop on Visual Form, volume 2059 of Lecture Notes on Computer Science, pages 378-387, Capri, Italy, 2001. Springer-Verlag. |
[1482] | C.L. Luengo Hendriks and L.J. van Vliet. Segmentation-free estimation of length distributions using sieves and ria morphology. In M. Kerckhove, editor, Proc. Third International Conference on Scale-Space, volume 2106 of Lecture Notes on Computer Science, pages 389-406, Vancouver, Canada, 2001. Springer-Verlag. |
[1483] | C.L. Luengo Hendriks and L.J. van Vliet. Segmentation-free estimation of length distributions using sieves and ria morphology. In Proc. 7th Annual Conference of the Advanced School for Computing and Imaging, pages 129-136, Heijen, the Netherlands, 2001. ASCI, Delft. |
[1484] | C.L. Luengo Hendriks and L.J. van Vliet. Basic morphological operations, band-limited images and sampling. In L.D. Griffin and M. Lillholm, editors, Scale Space Methods in Computer Vision, Proceedings of the Fourth International Conference, Scale-Space 2003, volume 2695 of Lecture Notes on Computer Science, pages 313-324, Berlin, 2003. Springer-Verlag. |
[1485] | C.L. Luengo Hendriks and L.J. van Vliet. Discrete morphology with line structuring elements. In N. Petkov and M.A. Westenberg, editors, Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, CAIP 2003, volume 2756 of Lecture Notes on Computer Science, pages 722-729, Berlin, 2003. Springer-Verlag. |
[1486] | C.L. Luengo Hendriks and L.J. van Vliet. Using line segments as structuring elements for sampling-invariant measurements. IEEE Transactions on Pattern Analysis and Machine Intelligence, 27(11):1826-1831, 2005. |
[1487] | N.R. Lugg, B. Freitag, S.D. Findlay, and L.J.. Allen. Energy-filtered transmission electron microscopy based on inner-shell ionization. Ultramicroscopy, 2010. |
[1488] | F. Luisier, T. Blu, and M. Unser. A new SURE approach to image denoising: Interscale orthonormal wavelet thresholding. IEEE Transactions on Image Processing, 16(3):593-606, 2007. |
[1489] | B. Lukiç, S. Jeney, Z. Sviben, A. Kulik, E.-L. Florin, and L. Forró. Motion of a colloidal particle in an optical trap. Physical Review E, 76:011112, 2007. |
[1490] | W. Lukosz. Übertragung nicht-negativer signale durch lineare filter. Journal of Modern Optics, 9(4):335-364, 1962. |
[1491] | R. Lumia, L. Shapiro, and O. Zuniga. A new connected components algorithm for virtual memory computers. Computer Vision, Graphics, and Image Processing, 22:287-300, 1983. |
[1492] | D. Luo, J. Barker, J.C. McGrath, and C.J. Daly. Iterative multilevel thresholding and splitting for three-dimensional segmentation of live cell nuclei using laser scanning confocal microscopy. Journal of Computer-Assisted Microscopy, 10(4):151-162, 1998. |
[1493] | A.R. Lupini. Aberration correction in STEM. PhD thesis, University of Cambridge, Cambridge, United Kingdom, 2001. Copy Bernd Rieger. |
[1494] | A.R. Lupini and S.J. Pennycook. Localization in elastic and inelastic scattering. Ultramicroscopy, 96:313-322, 2003. |
[1495] | A.R. Lupini and S.J. Pennycook. Rapid autotuning for crystalline specimens from an inline hologram. Journal of Electron Microscopy, 57(6):195-201, 2008. |
[1496] | A.R. Lupini, P. Wang, P.D. Nellist, A.I. Kirkland, and S.J. Pennycook. Aberration measurement using the ronchigram contrast transfer function. Ultramicroscopy, 110:891-898, 2010. |
[1497] | J. Lyklema, H.P. van Leeuwen, T. van Vliet, and A.-M Cazabat. Fundamentals of Interface and Colloid Science, volume Volume I: Fundamentals. Academic Press Limited, London, UK, 1991. |
[1498] | Y. Ma, M.R. Shortreed, and E.S. Yeung. High-throughput single-molecule spectroscopy in free solution. Analytical Chemistry, 72:4640-4645, 2000. |
[1499] | S.E. Maccagnano-Zacher, K.A. Mkhoyan, E.J. Kirkland, and J. Silcox. Effects of tilt on high-resolution adf-stem imaging. Ultramicroscopy, 187:718-726, 2008. |
[1500] | V.K. Madisetti and D.B. Williams, editors. The Digital Signal Processing Handbook. IEEE Press/CRC Press, 1997. |
[1501] | Brendan Maher. Spring theory. Nature, 448:984-986, 2007. |
[1502] | Berenike Maier, David Bensimon, and Vincent Croquette. Replication by a single DNA polymerase of a stretched single-stranded DNA. Proceedings of the National Academy of Sciences of the USA, 97(22):12002-12007, 2000. |
[1503] | J.B.A. Maintz, P.A. van den Elsen, and M.A. Viergever. Evaluation of ridge seeking operators for multimodality medical image matching. IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(4):353-365, 1996. |
[1504] | J.B.A. Maintz, P.A. van den Elsen, and M.A. Viergever. Evaluation of ridge seeking operators for multimodality medical image matching. PAMI, 18(4):353-365, 1996. |
[1505] | J.B.A. Maintz and M.A. Viergever. A survey of medical image registration. Medical Image Analysis, 1(1):1-37, 1998. |
[1506] | E. Majorovits, B. Barton, K. Schultheiß, F. Perez-Willard, D. Gerthsen, and R.R. Schröder. Optimizing phase contrast in transmission electron microscopy with an electrostatic (boersch) phase plate. Ultramicroscopy, 107:213-226, 2007. |
[1507] | S. Majumdar and D.S. Jayas. Classification of cereal grains using machine vision: III. texture models. Transactions of the American Society of Agricultural Engineers, 43(6):1681-1687, 2000. |
[1508] | M. Malac, M. Beleggia, R. Egerton, and Y. Zhu. Bright-field TEM imaging of single molecules: Dream or near future? Ultramicroscopy, 107:40-49, 2006. |
[1509] | M. Malac, M. Beleggia, R. Egerton, and Y. Zhu. Imaging of radiation-sensitive samples in transmission electron microscopes equipped with zernike phase plates. Ultramicroscopy, 108:126-140, 2007. |
[1510] | G. Malandain and S. Fernández-Vidal. Euclidean skeletons. Image and Vision Computing, 16(5):317-327, 1998. |
[1511] | S. Malkusch, U. Endesfelder, J. Mondry, M. Helleri, P.J. Verveer, and M. Heilemann. Coordinate-based colocalization analysis of single-molecule localization microscopy data. Histochem Cell Biol, 137:1-10, 2012. |
[1512] | R. Malladi, J.A. Sethian, and B.C. Vemuri. Shape modeling with front propagation: A level set approach. IEEE Transactions on Pattern Analysis and Machine Intelligence, 17(2):158-175, February 1995. |
[1513] | S.G. Mallat. A theory for multiresolution signal decomposition: The wavelet representation. IEEE Transaction on Pattern Analysis and Machine Intelligence, 11(7):674-693, July 1989. |
[1514] | S.G. Mallat. A wavelet tour of signal processing. John Wiley & Sons, New York, 2nd edition edition, 1999. |
[1515] | S.G. Mallat and W.L. Hwang. Singularity detection and processing with wavelets. IEEE Transactions on Information Theory, 38(2):617-643, March 1992. |
[1516] | S.G. Mallat and S. Zhong. Characterization of signals from multiscale edges. IEEE Transactions on Pattern Analysis and Machine Intelligence, 14(7):710-732, June 1992. |
[1517] | S.P. Mallick, B. Carragher, C.S. Potter, and D.J. Kriegman. Ace: Automated ctf estimation. Ultramicroscopy, 104:8-29, 2005. |
[1518] | F. Malmberg, R. Strand, and I. Nyström. Generalized hard constraints for graph segmentation. In A. Heyden and F. Kahl, editors, Image Analysis, Lecture Notes in Computer Science 6688, pages 36-47, Heidelberg, 2011. Springer. |
[1519] | E.J. Mancini and S.D. Fuller. Supplanting crystallography or supplementing microscopy? a combined approach to the study of an enveloped virus. Acta Crystallographica Section D, 56:1278-1287, 2000. |
[1520] | E.M.M. Manders, R. Hoebe, J. Strackee, A.M. Vossepoel, and J.A. Aten. Largest contour segmentation: A tool for the localization of spots in confocal images. Cytometry Part A, 23(1):15-21, 1996. |
[1521] | E.M.M. Manders, J. Stap, G.J. Brakenhoff, R. van Driel, and J.A. Aten. Dynamics of three-dimensional replication patterns during the s-phase, analysed by double labelling of dna and confocal microscopy. Journal of Cell Science, 103:857-862, 1992. |
[1522] | E.M.M. Manders, F.J. Verbeek, and J.A. Aten. Measurement of co-localization of objects in dual-colour confocal images. Journal of Microscopy, 169(3):375-382, 1993. |
[1523] | S. Manely, J.M. Gilette, G.H. Patterson, H. Shroff, H.F. Hess, E. Betzig, and J. Lippincott-Schwarz. High-density mapping of single-molecule trajectories with photoactivated localization microscopy. Nature Methods, 5(2):156-158, 2008. |
[1524] | S. Manely, J.M. Gillette, and J. Lippincott-Schwartz. Single-Particle Tracking Photoactivated Localization Microscopy for Mapping Single-Molecule Dynamics, volume 475 of Methods in Enzymology, chapter 5, pages 109-120. Elsevier, 2010. |
[1525] | M. Manghi, C. Tardin, J. Baglio, P. Rousseau, L. Salome, and N. Destainville. Probing DNA conformational changes with high temporal resolution by tethered particle motion. Physical Biology, 7:046003, 2010. |
[1526] | S. Manley, J. M. Gillette, G. H. Patterson, H. Shroff, H. F. Hess, E. Betzig, and J. Lippincott-Schwartz. High-density mapping of single-molecule trajectories with photoactivated localization microscopy. Nature Methods, 5(2):155-157, 2008. |
[1527] | P. Maragos. Pattern spectrum and multiscale shape representation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 11(7):701-716, 1989. |
[1528] | P. Maragos and R. W. Schafer. Morphological skeleton representation and coding of binary images. IEEE Transactions on Acoustics, Speech, and Signal Processing, 34(5):1228-1244, 1986. |
[1529] | Petros Maragos. Morphological systems: Slope transforms and max-min difference and differential equations. Signal Processing, 38(1):57-77, 1994. |
[1530] | Petros Maragos. Slope transforms: Theory and application to nonlinear signal processing. IEEE Transactions on Signal Processing, 43(4):864-877, 1995. |
[1531] | Petros Maragos. Differential morphology and image processing. IEEE Transactions on Image Processing, 5(6):922-937, 1996. |
[1532] | Petros Maragos and Fernand Meyer. Nonlinear pdes and numerical algorithms for modeling levelings and reconstruction filters. In Mads Nielsen, Peter Johansen, Ole F. Olsen, and Joachim Weickert, editors, Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece), volume 1682 of Lecture Notes on Computer Science, pages 363-374, Berlin Heidelberg, September 1999. Springer-Verlag. |
[1533] | K.V. Mardia, R.J. Morris, A.N. Walder, and J.J Koenderink. Estimation of torsion. Journal of Applied Statistics, 26:373-381, 1999. |
[1534] | J. Marek, Demjénová, Z. Tomori, J. Janáček, I. Zolotová, F. Valle, M. Farve, and G. Dietler. Interactive measurement and characterization of DNA molecules by analysis of AFM images. Cytometry Part A, 63(2):87-93, 2005. |
[1535] | K.J. Marfurt, R.L. Kirlin, S.L. Farmer, and M.S. Bahorich. 3-d seismic attributes using a semblance-based coherency algorithm. Geophysics, 63(4):1150-1165, July-August 1998. |
[1536] | V. Mariani, A.D. Schenk, A. Philippsen, and A. Engel. Simulation and correction of electron images of tilted planar weak-phase samples. Journal of Structural Biology, 174:259-268, 2011. |
[1537] | J.F. Marko. Introduction to Single-DNA Micromechanics, June 2, 2005 2005. |
[1538] | John F. Marko and Simona Cocco. The micromechanics of DNA. Physics World, 16(3), 2003. |
[1539] | John F. Marko and Eric D. Siggia. Fluctuations and Supercoiling of DNA. Science, 265(5171):506-508, 1994. |
[1540] | John F. Marko and Eric D. Siggia. Stretching DNA. Macromolecules, 28(26):8759-8770, 1995. |
[1541] | D. Marr. Vision. Freeman, San Francisco, USA, 1982. |
[1542] | D. Marr and E. Hildreth. Theory of edge detection. Proceedings of the Royal Society of London B, 207:187-217, 1980. |
[1543] | G.D. Marshall, A. Jesacher, A. Thayil, M.J. Withford, and M. Booth. Three-dimensional imaging of direct-written photonic structures. Optics Letters, 36(5):695-697, 2011. |
[1544] | W.F. Marshall, A. Straight, J.F. Marko, J. Swedlow, A. Dernburg, A.W. Murray, D.A. Agard, and J.W. Sedat. Interphase chromosomes undergo constrained diffusional motion in living cells. Current Biology, 7(12):930-939, 1998. |
[1545] | J.B. Martens. Local orientation analysis in images by means of the hermite transform. IEEE Transactions on Image Processing, 6(8):1103-1116, August 1997. |
[1546] | B.R. Martin, B.N.G. Giepmanns, S.R. Adams, and R.Y. Tsien. Mammalian cell-based optimization of the biarsenical binding tetracysteine motif for improved fluorescence and affinity. Nature biotechnology, 23(10):1308-1314, 2005. |
[1547] | C. san Martin, R.M. Burnett, F. de Hass, R. Heinkel, T. Rutten, S.D. Fuller, S.J. Butcher, and D.H. Bamford. Combined EM/X-ray imaging yields a quasi-atomic model of the adenovirus-related bacteriophage PRD1 and shows key capsid and membrane interactions. Structure, 9:917-930, 2001. |
[1548] |
Douglas S. Martin, Martin B. Forstner, and Josef A. K äs. Apparent Subdiffusion Inherent to Single Particle Tracking. Biophysical Journal, 83(4):2109-2117, 2002. |
[1549] | G. Martinez and K. Tsuno. Design of Wien filters with high resolution. Ultramicroscopy, 100:105-114, 2004. |
[1550] | G. Martinez and K. Tsuno. The use of multipole fields for aberration correctionin pi/2 wien filters. Physics Procedia, 1:193-198, 2008. |
[1551] | M. J. Martinez, A. D. Aragon, A. L. Rodriguez, J. M. Weber, J. A. Timlin, M. B. Sinclair, D. M. Haaland, and M. Werner-Washburne. Identification and removal of contaminating fluorescence from commercial and in-house printed dna microarrays. Nucleic Acids Research, 31(4):e18, 2003. |
[1552] | T.L. Marzetta. A simple derivation of the constrained multiple parameter cramer-rao bound. IEEE Transactions on Signal Processing, 41(6):2247-2249, 1993. |
[1553] | D.L. Massart, J. Smeyers-Verbeke, X. Capron, and Karin Schlesier. Visual Presentation of Data by Means of Box Plots. LC-GC Europe, 18(4):215-218, 2005. |
[1554] | Jr. Massey, Frank J. The Kolmogorov-Smirnov test for goodness of fit. Journal of the American Statistical Association, 46:68-78, 1951. |
[1555] | D.N. Mastronarde. Dual-axis tomography: An approach with alignment methods that preserve resolution. Journal of Structural Biology, 120:343-352, 1997. |
[1556] | G. Matheron. Elements pour une Theorie des Milieux Poreux. Masson, Paris, 1967. |
[1557] | G. Matheron. Random Sets and Integral Geometry. Wiley, New York, 1975. |
[1558] | G. Matheron and J. Serra. The birth of mathematical morphology. In H. Talbot and R. Beare, editors, Mathematical Morphology, Proceedings of the VI International Symposium ISMM, Sydney, April 2002, Collingwood, Australia, 2002. CSIRO Publishing. |
[1559] | A. Matov, K. Applegate, P. Kumar, C. Thoma, W. Krek, G. Danuser, and T. Wittmann. Analysis of microtubule dynamic instability using a plus-end growth marker. Nature Methods, 7(9):761-768, 2010. |
[1560] | T. Mattfeldt, H. Frey, and C. Rose. Second-order stereology of benign and malignant alterations of the human mammary gland. Journal of Microscopy, 171, Pr 2:143-151, August 1993. |
[1561] | T. Mattfeldt, H.-W. Gottfried, V. Schmidt, and H.A. Kestler. Classification of spatial textures in benign and cancerous glandular tissues by stereology and stochastic geometry using artificial neural networks. Journal of Microscopy, 198, Pt 2:143-158, May 2000. |
[1562] | T. Mattfeldt and D. Stoyan. Improved estimation of the pair correlation function of random sets. Journal of Microscopy, 200, Pt 2:158-173, November 2000. |
[1563] | A.L. Mattheyes, M. Kampmann, C.E. Aktinson, and S.M. Simon. Fluorescence anisotropy reveals order and disorder of protein domains in the nuclear pore complex. Biophysical Journal, 99:1706-1717, 2010. |
[1564] | A.L. Mattheyses, A.D. Hoppe, and D. Axelrod. Polarized fluorescence resonance energy transfer microscopy. Biophysical Journal, 87(4):2787-2797, 2004. |
[1565] | J.C. Maxwell. On hills and dales. The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science, 40(269):421-427, 1870. |
[1566] | B.H. Mayall, J.D. Tucker, M.L. Christensen, L.J. van Vliet, and I.T. Young. Experience with the Athena semi-automated karyotyping system. Cytometry, 11(1):59-72, 1990. |
[1567] | S.J. Maybank. Optical flow and the taylor expansion. Pattern Recognition Letters, 4:243-246, 1986. |
[1568] | M.M. Maye, M.T. Kumara, D. Nykypanchuk, W.B. Sherman, and O. Gang. Switching binary states of nanoparticle superlattices and dimer clusters by DNA strands. Nature Nanotechnology, 5:116, 2010. |
[1569] | Robert M. Mazo. Brownian Motion: fluctuations, dynamics, and applications. International series of monographs on physics. Clarendon Press, Oxford, 2002. |
[1570] | J.P. Jr. McGuire and R.A. Chipman. Polarization aberrations. 1. rotationally symmetric optical systems. Applied Optics, 33(22):5080-5100, 1994. |
[1571] | J.P. Jr. McGuire and R.A. Chipman. Polarization aberrations. 2. tilted and decentered optical systems. Applied Optics, 33(22):5101-5107, 1994. |
[1572] | D.B. McIntosh, N. Ribeck, and O.A. Saleh. Detailed scaling analysis of low-force polyelectrolyte elasticity. Physical Review E, 80(4):041803, 2009. |
[1573] | R.A. McLaughlin and M.D. Alder. The hough transform versus the upwrite. IEEE Transactions on Pattern Analysis and Machine Intelligence, 20(4):396-400, April 1998. |
[1574] | B.J. McMorran, A. Agrawal, I.M. Anderson, A.A. Herzing, H.J. Lezec, J.J. McClelland, and J. unguris. Electron vortex beams with high quanta of orbital angular momentum. Science, 331:192-195, 2011. |
[1575] | K.R. Mecke. Morphological characterization of patterns in reaction-diffusion systems. Physical Review E, 53(5):4794-4800, May 1996. |
[1576] | O. Medalia, I. Weber, A.S. Frangakis, D. Nicastro, G. Gerisch, and W. Baumeister. Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography. Ultramicroscopy, 298:1209-1213, 2002. |
[1577] | Shlomi Medalion, Shay M. Rappaport, and Yitzhak Rabin. Coupling of twist and writhe in short DNA loops . The Journal of Chemical Physics, 132(4):045101, 2010. |
[1578] | M.B.M. Meddens, B. Rieger, C.G. Figdor, A. Cambi, and K. van den Dries. Automated podosome identification and characterization in fluorescence microscopy images. Microscopy and Microanalysis, 19(1):180-189, 2013. doi:10.1017/S1431927612014018. |
[1579] | I.L. Medintz, S.A. Trammell, H. Mattoussi, and J.M. Mauro. Reversible modulation of quantum dot photoluminescence using a protein- bound photochromic fluorescence resonance energy transfer acceptor. Journal of the American Chemical Society, 126:30-31, 2004. |
[1580] | E. Meijering. A chronology of interpolation: From ancient astronomy to modern signal and image processing. Proceedings of the IEEE, 90(3):319-342, March 2002. |
[1581] | E. Meijering and M. Unser. A note on cubic convolution interpolation. IEEE Transactions on Image Processing, 12(4):477-479, April 2003. |
[1582] | Arnold Meijster and Michael H.F. Wilkinson. A comparison of algorithms for connected set openings and closings. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(4):484-494, April 2002. |
[1583] | P.M. Merlin and D.J. Farber. A parallel mechanism for detecting curves in pictures. IEEE Transactions on Computers, 24:96-98, January 1975. |
[1584] | H. Metzger. Transmembrane signalling: the joy of aggregation. Journal of Immunology, 149:1477-1487, 1992. |
[1585] | Fernand Meyer and Petros Maragos. Morphological scale-space representation with levelings. In Mads Nielsen, Peter Johansen, Ole F. Olsen, and Joachim Weickert, editors, Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece), volume 1682 of Lecture Notes on Computer Science, pages 187-198, Berlin Heidelberg, September 1999. Springer-Verlag. |
[1586] | Fernand Meyer and Petros Maragos. Multiscale morphological segmentations based on watershed, flooding, and eikonal pde. In Mads Nielsen, Peter Johansen, Ole F. Olsen, and Joachim Weickert, editors, Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece), volume 1682 of Lecture Notes on Computer Science, pages 351-362, Berlin Heidelberg, September 1999. Springer-Verlag. |
[1587] | J.C. Meyer, C.O. Girit, M.F. Crommie, and A. Zettl. Imaging and dynamics of light atoms and molecules on graphene. Nature, 454:319-323, 2008. |
[1588] | J.C. Meyer, C. Kisielowski, R. Erni, M.D. Rossell, M.F. Crommie, and A. Zettl. Direct imaging of lattice atoms and topological defects in graphene membranes. Nano Letters, 8:3582-3586, 2008. |
[1589] | R.R. Meyer, A.I. Kirkland, and W.O. Saxton. A new method for the determination of the wave aberration function for high resolution TEM 1. Measurement of the symmetric aberrations. Ultramicroscopy, 92:89-109, 2002. |
[1590] | R.R. Meyer, A.I. Kirkland, and W.O. Saxton. A new method for the determination of the wave aberration function for high-resolution TEM. 2. Measurement of the antisymmetric aberrations. Ultramicroscopy, 99:115-123, 2004. |
[1591] | R.R. Meyer and A.I. Krikland. The effects of electron and photon scattering on signal and noise transfer properties of scintillators in ccd cameras used for electron detection. Ultramicroscopy, 75:23-33, 1998. |
[1592] | J. Miao, T. Ohsuna, O. Terasaki, K.O. Hodgson, and M.A. O'Keefe. Atomic resolution three-dimensional electron diffraction microscopy. Physical Review Letters, 89, 2002. |
[1593] | M. Michaelis and G. Sommer. Junction classification by multiple orientation detection. In Jan-Olof Eklundh, editor, ECCV'94, Third European Conference on Computer Vision, pages 101-108, Stockholm, Sweden, May 1994. |
[1594] | M. Michaelis and G. Sommer. A lie group approach to steerable filters. Pattern Recognition Letters, 16:1165-1174, 1995. |
[1595] | X. Michalet, F. Pinaud, T. D. Lacoste, M. Dahan, M. P. Bruchez, A. P. Alivisatos, and S. Weiss. Properties of fluorescent semiconductor nanocrystals and their application to biological labeling. Single Molecules, 2(4):261-276, 2001. |
[1596] | K. Michielsen and H. De Raedt. Morphological image analysis. Computer Physics Communications, 132:94-103, 2000. |
[1597] | K. Michielsen and H. de Raedt. Integral-geometry morphological image analysis. Physics Report, 347:461-538, 2001. |
[1598] | C. von Middendorff, A. Egner, C. Geisler, S.W. Hell, and A. Schönle. Isotropic 3D nanoscopy based on single emitter switching. Optics Express, 16(25):20774-20788, December 2008. |
[1599] | P.A. Midgley and R.E. Dunin-Borkowski. Electron tomography and holography in materials science. Nature Materials, 8:271-280, 2009. |
[1600] | P.A. Midgley and M. Weyland. 3D electron microscopy in the physical sciences: the development of Z-contrast and EFTEM tomography. Ultramicroscopy, 96:413-431, 2003. |
[1601] | P. Milanfar. A model of the effect on image motion in the radon transform domain. IEEE Transaction on Image Processing, 8(9):1276-1281, 1999. |
[1602] | A-C. Milazzo, G. Moldovan, J. Lanman, L. Jin, J.C. Bouwer, S. Klienfelder, S.T. Peltier, M.H. Ellisman, A.I. Kirkland, and N.-H. Xoung. Characterization of a direct detection device imaging camera for transmission electron microscopy. Ultramicroscopy, 110:744-747, 2010. |
[1603] | S.L. Miller. A production of amino acids under possible primitive earth conditions. Science, 117:528-529, 1953. |
[1604] | J.L.S. Milne, D. Shi, P.B. Rosenthal, J.S. Sunshine, G.J. Domingo, X. Wu, B.R. Brooks, R.N. Perham, R. Henderson, and S. Subramaniam. Molecular architecture and mechanism of an icosahedral pyruvate dehydrogenase complex: a multifunctional catalytic machine. EMBO Journal, 21:5587-5598, 2002. |
[1605] | J.W. Milnor. Topology from the differentiable viewpoint. Princeton University Press, Princeton, New Jersey, 1965. |
[1606] | G. Min and C.J.R. Sheppard. Image formation in two-photon fluorescence microscopy. Optik, 86:104-106, 1990. |
[1607] | G. Min and C.J.R. Sheppard. Comparison of three-dimensional imaging properties between two-photon and single-photon fluorescence microscopy. Journal of Microscopy, 177:128-137, 1995. |
[1608] | W. Min, S. Lu, S. Chong, R. Roy, G.R. Holtom, and X.S. Xie. Imaging chromophores with undetectable fluorescence by stimulated emission microscopy. Nature, 461(22):1105-1109, 2009. |
[1609] | J.A. Mindell and N. Grigorieff. Accurate determination of local defocus and specimen tilt in electron microscopy. Journal of Structural Biology, 142:334-347, 2003. |
[1610] | MinGW. Minimalist gnu for windows. 2008. [ http ] |
[1611] | H. Minkowski. Volumen und Oberflächen. Mathematische Annalen, pages 447-495, 1903. |
[1612] | A.A. Mironov, A.A.Jr. Mironov, G.V. Beznoussekno, A. Trucco, P. Lupetti, J.D. Smith, W.J.C. Geerts, A.J. Koster, K.N.J. Burger, M.E. Martone, T.J. Deerinck, M.H. Ellisman, and A. Luini. ER-to-Golgi carriers arise through direct en bloc protrusion and multistage maturation of specialized ER exit domains. Developmental Cell, 5:583-594, 2003. |
[1613] | M.J. Mirza and K.L. Boyer. Performance evaluation of a class of M-estimators for surface parameter estimation in noisy range data. IEEE Transactions on Robotics and Automation, 9(1):75-85, February 1993. |
[1614] | C.W. Misner, K.S. Thorne, and J.A. Wheeler. Gravitation. W.H. Freeman and Company, New York, 1999. |
[1615] | A. Mitiche, R. Grisell, and J.K. Aggarwal. On smoothness of a vector field-application to optical flow. IEEE Transactions on Pattern Analysis and Machine Intelligence, 10(6):943-949, 1988. |
[1616] | M. Mitome, K. Ishizuka, and Y. Bando. Quantitativeness of phase measurement by transport of intensity equation. Journal of electron microscopy, pages 1-9, 2009. |
[1617] | S. Mitra (Ed) and G. Sicuranza (Ed). Nonlinear Image Processing. Academic Press, 2000. |
[1618] | K. Mitsuishi, M. Takeguchi, Y. Kondo, F. Hosokawa, K. Okamoto, T. Sannomiva, M. Hori, and T. Iwama. Ultrahigh-vacuum third-order spherical aberration (cs) corrector for a scanning transmission electron microscope. Microscopy and Microanalysis, 12:1-5, 2006. |
[1619] | C. Mitterbauer, G. Kothleitner, W. Grogger, H. Zandbergen, B. Freitag, P.C. Tiemeijer, and F. Hofer. Electron energy-loss near-edge structures of 3d transition metal oxides recorded at high-energy resolution. Ultramicroscopy, 96:469-480, 2003. |
[1620] | C. Mitterbauer, G. Kothleitner, F. Hofer, P.C. Tiemeijer, B.H. Freitag, and H.W. Zandbergen. High energy resolution EELS using a monochromoized 200kV TEM: Comparative investigation of titanum oxides. In Microscoc. Microanal., volume 9S3, pages 1-2, 2003. |
[1621] | K. Miyashita, K. Yamamoto, T. Hirayama, and T. Tanji. Direct observation of electrostatic microfields by four-electron-wave interference using two electron biprisms. Journal of Electron Microscopy, 53(6):577-582, 2004. |
[1622] | K.A. Mkhoyan, P.E. Batson, J. Cha, W.J. Schaff, and J. Silcox. Direct determination of local lattice polarity in crystals. Science, 312:1354, 2006. |
[1623] | M.J. Mlodzianoski, M.F. Juette, G.L. Beane, and J. Bewersdorf. Experimental characterization of 3d localization techniques for particle-tracking and super-resolution microscopy. Optics Express, 17(10):8264-8277, 2009. |
[1624] | M.J. Mlodzianoski, J.M. Schreiner, S.P. Callahan, K. Smolkova, A. Dlaskova, J. Santorova, P. Jezek, and J. Bewersdorf. Sample drift correction in 3d fluorescence photoactivation localization microscopy. Optics Express, 19(16):15009-15019, 2011. |
[1625] | J. Mœller. Aspects of spatial statistics, stochastic geometry and Markov chain monte carlo methods. www, 2000. D. Sc. thesis. |
[1626] | W.E. Moerner. New directions in single-molecule imaging and analysis. Proceedings of the National Academy of Sciences of the USA, 104(31):12596-12602, 2007. |
[1627] | F. Mokhtarian, N. Khalili, and P. Yuen. Curvature computation on free-form 3-d meshes at multiple scales. Computer Vision and Image Under Standing, 83:118-139, 2001. |
[1628] | F. Mokhtarian and A.K. Machworth. A theory of multiscale, curvature-based shape representation for planar curves. IEEE Transactions on Pattern Analysis and Machine Analysis, 14(8):789-805, August 1992. |
[1629] | C. Molenaar. Methods for molecular analysis in living cells. PhD thesis, Leiden University Medical Center, Leiden, The Netherlands, June 2003. |
[1630] | C. Molenaar, K. Wiesmeijer, N.P. Verwoerd, S. Khazen, R. Eils, H.J. Tanke, and R.W. Dirks. Visualizing telomere dynamics in living mammalian cells using PNA probes. The EMBO Journal, 22(24):6631-6641, 2003. |
[1631] | O. Monga, N. Ayache, and P.T. Sander. From voxel to intrinsic surface features. Image and Vision Computing, 10(6):403-417, 1992. |
[1632] | O. Monga and S. Benayoun. Using partial derivatives of 3d images to extract typical surface features. Computer Vision and Image Understanding, 61(2):171-189, 1995. |
[1633] |
Andrea Montanari and Marc M ézard. Hairpin Formation and Elongation of Biomolecules. Physical Review Letters, 86(10):2178-2181, 2001. |
[1634] | U. Montanari. A method for obtaining skeletons using a quasi-euclidean distance. Journal of the Association for Computing Machinery, 15(4):600-624, 1968. |
[1635] | T.K. Moon. The expectation-maximization algorithm. IEEE Signal Processing Magazine, 13(6):47-60, November 1996. |
[1636] | P.. Mooney. Optimization of image collection for cellular electron microscopy. Methods in cell biology, 79:661-719, 2007. |
[1637] | E.H. Moore. On the reciprocal of the general algebraic matrix. Bulletin of the American Mathematical Society, 26:394-395, 1920. |
[1638] | D.G. Morgan, J.-F. Mnntret, A. Neuhof, T.A. Rapoport, and C.W. Akey. Structure of the mammalian ribosome-channel complex at 17 resolution. Journal of Molecular Biology, 324:871-886, 2002. |
[1639] | J.P. Morniroli, F. Houdellier, C. Roucau, J. Puiggali, S. Gesti, and A. Redjaimia. Lacdif, a new electron diffraction technique obtained with the lacbed configuration and a cs corrector: Comparison with electron precession. Ultramicroscopy, 108:100-115, 2007. |
[1640] | J.P. Morniroli and J.W. Steeds. Microdiffratction as a tool for crystal structure identification and determination. Ultramicroscopy, 45:219-239, 1992. |
[1641] | J. David Moroz and Philip Nelson. Torsional directed walks, entropic elasticity, and DNA twist stiffness. Proceedings of the National Academy of Sciences of the USA, 94(26):14418-14422, 1997. |
[1642] | J. David Moroz and Philip Nelson. Entropic Elasticity of Twist-Storing Polymers. Macromolecules, 31:6333-6347, 1998. |
[1643] | Alex Morriss-Andrews, Joerg Rottler, and Steven S. Plotkin. A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality. The Journal of Chemical Physics, 132(3):035105, 2010. |
[1644] | M.C. Morrone and D.C. Burr. Feature detection in human vision: a phase-dependent energy model. Proc. Roc. Soc. Lond. B, 235:221-245, 1988. |
[1645] | M.C. Morrone and R.A. Owens. Feature detection from local energy. Pattern Recognition Letters, 6:303-313, December 1987. |
[1646] | K.I. Mortensen, L.S. Churchman, J.A. Spudich, and H. Flyvbjerg. Optimized localization analysis for single-molecule tracking and super-resolution microscopy. Nature Methods, 7(5):377-384, 2010. |
[1647] | C. Moser, T. Mayr, and I. Klimant. Filter cubes with built-in ultrabright light-emitting diodes as exchangeable excitation light sources in fluorescence microscopy. Journal of Microscopy, 222:135-140, 2006. |
[1648] | F. Mouche, N. Boisset, J. Lamy, F. Zal, and J.N. Lamy. Structural comparison of cephalopod hemocyanins: Phylogenetic significance. Journal of Structural Biology, 127:199-212, 1999. |
[1649] | F. Mouche, N. Boisset, and P.A. Penczek. Lumbricus terrestris hemoglobin - the architecture of linker chains and structural variation of the central toroid. Journal of Structural Biology, 133:176-192, 2001. |
[1650] | F. Mouche, Y. Zhu, J. Pulokas, C.S. Potter, and B. Carragher. Automated three-dimensional reconstruction of keyhole limpet hemocyanin type 1. Journal of Structural Biology, 144:301-312, 2003. |
[1651] | V. Mourik, K. Zuo, S.M. Frolov, S.R. Plissard, E.P.A.M. Bakkers, and L.P. Kouwenhouven. Signatures of majorana fermions in hybrid superconductor-semiconductor nanowire devices. Science, 336:1003-1008, 2012. |
[1652] | N. Mücke, L. Kreplak, R. Krimse, T. Wedig, H. Herrmann, U. Aebi, and J. Langowski. Assessing the flexibility of intermediate filaments by atomic force microscopy. Journal of Molecular Biology, 335(5):1241-1250, 2004. |
[1653] | E. Mudry, K. Belkebir, J. Girard, J. Savatier, E. Le Moal, C. Nicoletti, M. Allain, and A. Sentenac. Structured illumination microscopy using unknown speckle patterns. Nature Photonics, 6:312-314, 2012. |
[1654] | M. Mühlich and T. Aach. Analysis of multiple orientations. IEEE Transactions on Image Processing, 18(7):1424-1437, 2009. |
[1655] | E.A. Mukamel, H. Babcock, and X. Zhuang. Statistical deconvolution for superresolution fluorescence microscopy. Biophysical Journal, 102:2391-2400, 2012. |
[1656] | E.A. Mukamel and M.J. Schnitzer. Unified resolution bounds for conventional and stochastic localization fluorescence microscopy. Physical Review Letters, 109:168102, 2012. |
[1657] | C.B. Müller and J. Enderlein. Image scanning microscopy. Physical Review Letters, 104:198101, 2010. |
[1658] | D.A. Muller, L. Fitting Kourkoutis, M. Murfitt, J.H. Song, H.Y. Hwang, J. Silcox, N. Dellby, and O.L. Krivanek. Atomic-scale chemical imaging of composition and bonding by aberration-corrected microscopy. Science, 319:1073-1076, 2008. |
[1659] | D.A. Muller and J. Grazul. Optimizing the environment for sub-0.2 nm scanning transmission electron microscopy. Journal of Electron Microscopy, 50(3):219-226, 2001. |
[1660] | D.A. Muller, E.J. Kirkland, M.G. Thomas, J.L. Grazul, L. Fitting, and M. Weyland. Room design for high-performance electron microscopy. Ultramicroscopy, 106:1033-1040, 2006. |
[1661] | D.A. Muller and J. Silcox. Delocalization in inelastic scattering. Ultramicroscopy, 59:195-213, 1995. |
[1662] | H. Müller, S. Uhlemann, P. Hartel, and M. Haider. Advancing the hexapole cs-corrector for the scanning transmission electron microscope. Microscopy and Microanalysis, 12:442-455, 2006. |
[1663] | H. Muller, S. Uhlemann, P. Hartel, and M. Haider. Aberration-corrected optics: from an idea to a device. Physcis Procedia, 1:167-178, 2008. |
[1664] | S.A. Müller and A. Engel. Biological scanning transmission electron microscopy: Imaging and single molecule mass determination. Chimia, 60(11):749-752, 2006. |
[1665] | S.P. Müller, C.K. Abbey, F.J. Rybicki, S.C. Moore, and M.F. Kijewski. Measures of performance in nonlinear estimation tasks: prediction of estimation performance at low signal-to-noise ratio. Physics in Medicine and Biology, 50:3697-3715, 2005. |
[1666] | J.C. Mullikien, L.J. van Vliet, H. Netten, F.R. Boddeke, G.W. van der Feltz, and I.T. Young. Methods for CCD camera characterization. In H.C. Titus and A. Waks, editors, SPIE Proceedings, volume 2173, pages 73-84, San Jose, CA, February 9-10 1994. |
[1667] | J.C. Mullikin. The vector distance transform in two and three dimensions. Graphical Models and Image Processing, 54(6):526-535, 1992. |
[1668] | Bruce R. Munson, Donald F. Young, and Theodore H. Okiishi. Fundamentals of Fluid Mechanics. John Wiley & Sons, Inc, New York, 3rd edition, 1998. |
[1669] | H. Munthe-Kaas and M. Haveraaen. Coordinate free numerics. part 1: How to avoid index wrestling in tensor computations. Technical report, Department of Informatics, University of Bergen, Norway, 1995. |
[1670] | E. Murdy, E. le Moral, P. Ferrand, P.C. Chaumet, and A. Sentenac. Isotropic diffraction-limited focusing using a single objective lens. Physical Review Letters, 105:203903, 2010. |
[1671] | J.L.A.N. Murk, B.M. Humbel, U. Ziese, J.M. Griffith, G. Posthuma, J.W. Slot, A.J. Koster, A.J. Verkleij, H.J. Geuze, and M.J. Kleijmeer. Endosomal compartmentalization in three dimensions: Implications for membrane fusion. Proceedings of the National Academy of Sciences of the United States of America, 100(23):13332-13337, 2003. |
[1672] | S. Muto, R.C. Pueter, and K. Tatsumi. Spectral restoration and energy resolution improvement of electron energy-loss spectra by pixon reconstruction: I. Principle and test examples. Journal of Electron Microscopy, 55(4):215-223, 2006. |
[1673] | S. Muto, K. Tatsumi, R.C. Puetter, T. Yosida, Y. Yamamoto, and Y. Sasano. Spectral restoration and energy resolution improvement of electron energy-loss spectra by pixon reconstruction: II. Application to practical ELNES analysis of low SNR. Journal of Electron Microscopy, 55(4):225-230, 2006. |
[1674] | M. Nagao and T. Matsuyama. Edge preserving smoothing. Computer Graphics and Image Processing, 9:394-407, 1979. |
[1675] | H.H. Nagel. Displacement vectors derived from second-order intensity variations in image sequences. Computer Graphics and Image Processing, 21:85-117, 1983. |
[1676] | H.H. Nagel and W. Enkelmann. An investigation of smoothness constraints for the estimation of displacement vector fields form image sequences. IEEE Transactions of Pattern Recognition and Machine Intelligence, 8:168-176, 1986. |
[1677] | P. Nagy, D.J. Ardent-Jovin, and T.M. Jovin. Small interfering RNAs suppress the expression of endogenous and GFP-fused epidermal growth factor receptor (erbb1) and induce apoptosis in erbb1-overexpressing cells. Experimental Cell Research, 285(1):39-49, 2003. |
[1678] | P. Nagy, J. Claus, T.M. Jovin, and D.J. Arndt-Jovin. Distribution of resting and ligand-bound ErbB1 and ErbB2 receptor tyrosine kinases in living cells using number and brightness analysis. Proceedings of the National Academy of Sciences of the United States of America, 107(38):16524-16529, 2010. |
[1679] | Y. Nakagawa and A. Rosenfeld. A note on the use of local min and max operations in digital picture processing. IEEE Transactions on Systems, Man and Cybernetics, 8(8):3, 1978. |
[1680] | Y. Nakajima, H. Inomata, H. Nogawa, Y. Sato, S. Tamura, K. Okazaki, and S. Torii. Physics-based flow estimation of fluids. Pattern Recognition, 36:1203-1212, 2003. |
[1681] | N. Nakanishi, Y. Kotaka, and T. Yamazaki. An expanded approach to noise reduction from high-resolution stem images based on the maximum entropy method. Ultramicroscopy, 2005. accepted. |
[1682] | M.J. Narasimha and A.M. Peterson. On the computation of the discrete cosine transform. IEEE Transactions on Communications, 26:934-936, June 1978. |
[1683] | G.P. Nason, R. von Sachs, and G. Kroisandt. Wavelet processes and adaptive estimation of the evolutionary wavelet spectrum. Journal of the Royal Statistical Society B, 62:271-292, 2000. |
[1684] | R.A. Neher and E. Neher. Applying spectral fingerprinting to the analysis of FRET images. Microscopy Research and Technique, 64:185-195, 2004. |
[1685] | R.A. Neher and E. Neher. Optimizing imaging parameters for the separation of multiple labels in a fluorescence image. Journal of Microscopy, 213(1):46-62, 2004. |
[1686] | F. Karimi Nejadasl, M. Karuppasamy, A.J. Koster, and R.B.G. Ravelli. Defocus estimationfromstroboscopiccryo-electronmicroscopydata. Ultramicroscopy, 111:1592-1598, 2011. |
[1687] | J. Nelayah, L. Gu, W. Sigle, C.T. Koch, I. Pastoriza-Santos, L.M. Liz-Marzan, and P.A. van Aken. Direct imaging of surface plasmon resonances on single triangular silver nanoprisms at optical wavelength using low-loss eftem imaging. Optics Letters, 34(7):1003-1005, 2009. |
[1688] | P.D. Nellist, G. behan, A.I. Kirkland, and C.J.D. Hetherington. Confocal operation of a transmission electron microscope with two aberration correctors. Applied Physics Letters, 89:124105, 2006. |
[1689] | P.D. Nellist, M.F. Chisholm, N. Dellby, O.L. Krivanek, M.F. Murfitt, Z.S. Szilagyi, A.R. Lupini, A. Borisevick, W.H. jr. Sides, and S.J. Pennycook. Direct sub-angstrom imaging of a crystal lattice. Science, 305:1741, 2004. |
[1690] | P.D. Nellist, E.C. Cosgriff, G. Behan, and A.I. Kirkland. Imaging modes for scanning confocal electron microscopy in a double aberration-corrected transmission electron microscope. Microscopy and Microanalysis, 14:82-88, 2008. |
[1691] | P.D. Nellist and S.J. Pennycook. Accurate structure determination from image reconstruction in ADF STEM. Journal of Microscopy, 1-2:159-170, 1998. |
[1692] | P.D. Nellist and S.J. Pennycook. Subangstrom resolution by underfocused incoherent transmission electron microscopy. Physical Review Letters, 81(19):4156-4159, 1998. |
[1693] | P.D. Nellist and S.J. Pennycook. Incoherent imaging using dynamically scattered coherent electrons. Ultramicroscopy, 78:111-124, 1999. |
[1694] | P.D. Nellist and S.J. Pennycook. The principle and interpretation of annular dark-field z-contrast imaging. In Advances in Imaging and Electron Physics, 113, pages 147-203. 2000. |
[1695] | P.D. Nellist and S.J. Pennycook. The principles and interpretation of annular dark-field z-contrast imaging. Advances in Imaging and Electron Physics, 113:147-203, 2000. Copy Bernd,Rolf. |
[1696] | P.D. Nellist and J.M. Rodenburg. Beyond the conventional information limit: the relevant coherence function. Ultramicroscopy, 54:61-74, 1994. |
[1697] | Edward Nelson. Dynamical Theories of Brownian Motion, 2001. |
[1698] | P.C. Nelson, C. Zurla, D. Brogioli, J.F. Beausang, L. Finzi, and D. Dunlap. Tethered particle motion as a diagnostic of DNA tether length. Journal of Physical Chemistry B, 2006. |
[1699] | Philip C. Nelson. Colloidal particle motion as a diagnostic of DNA conformational transitions. Current Opinion in Colloid & Interface Science, 2007. |
[1700] |
M. Netopil \\\ik. Orientation-dependent rotational diffusion coefficient of rod-like macromolecules in semi-dilute solution. Rheologica Acta, 29:172-173, 1990. |
[1701] | H. Netten, L.J. van Vliet, F.R. Boddeke, P. de Jong, and I.T. Young. A fast scanner for fluorescence microscopy using a 2-D CCD amd time delayed integration. Bioimaging, 2:184-192, 1994. |
[1702] | Richard M. Neumann. Entropic Elasticity of Weakly Perturbed Polymers, January 22, 2001 2001. |
[1703] | K.G. Neumüller, K. Elsayad, J.M. Reisecker, M.N. Waxham, and K.G. Heinze. Photounbinding of calmodulin from a family of CaM binding peptides. PlOS one, 5(11):14050, 2010. |
[1704] | V. van Ngo, M. Hernandez, B. Roth, and D.C. Joy. STEM imaging of lattic fringes and beyond in a UHR in-lens field-emission SEM. Microscopy Today, (3):12-16, 2007. |
[1705] | Lam K. Nguyen, Miguel Bravo-Zanoguera, Albert L. Kellner, and Jeffrey H. Price. Magnification Corrected Optical Image Splitting for Simultaneous Multiplanar Acquisition. In Daniel L. Farkas and Robert C. Leif, editors, Optical Diagnostics of Living Cells III, volume 3921, pages 31-40. Proceedings of SPIE, 2000. |
[1706] | W. Niblack and D. Petkovic. On improving the accuracy of the Hough transform: Theory, simulations, and experiments. In Proceedings of the IEEE Computer Society Conference CVPR (Ann-Arbor), pages 574-579, June 1988. |
[1707] | W.V. Nicholson and R.M. Glaser. Review: Automatic particle detection in electron microscopy. Journal of Structural Biology, 133:90-101, 2001. |
[1708] | S. Nickell, F. Förster, A. Linaroudis, W. del Net, F. Beck, R. Hegerl, W. Baumeister, and J.M. Plizko. TOM software toolbox: acquisition and analysis for electron tomography. Journal of Strcutural Biology, 149(3):227-234, 2004. |
[1709] | N. Nielsen, L. Florack, and R. Deriche. Regularization, scale-space and edge-detection filters. Journal of Mathematical Imaging and Vision, 7(4):291-307, 1997. |
[1710] | C.M. Niessen, L.M.H. van der Raaij-Helmer, E.H.M. Hulsman, R. van der Neut, M.F. Jonkman, and A. Sonnenberg. Deficiency of the β4 subunit in junctional epidermolysis bullosa with pyloric atresia: consequences for hemidesmosome formation and adhesion properties. Journal of Cell Science, 109:1695-1706, July 1996. |
[1711] | W.J. Niessen, J.S. Duncan, M. Nielsen, L.M.J. Florack, B.M. ter Haar Romeny, and M.A. Viergever. A multiscale approach to image sequence analysis. Computer Vision and Image Understanding, 65(2):259-268, 1997. |
[1712] | W.J. Niessen, B.M. ter Haar Romeny, L.M.J. Florack, A.H. Salden, and M.A. Viergever. Nonlinear diffusion of scalar images using well-posed differential operators. In CVPR'94 (Seattle, U.S.A.), pages 92-97, 1994. |
[1713] | R.P.J. Nieuwenhuizen. Resolution in localization microscopy. Master's thesis, Delft University of Technology, Delft, The Netherlands, March 2011. |
[1714] | R.P.J. Nieuwenhuizen, K.A. Lidke, M. Bates, D. Leyton Puig, D. Grünwald, S. Stallinga, and B. Rieger. Measuring image resolution in optical nanoscopy. Nature Methods, 10:557-562, June 2013. |
[1715] | R.P.J. Nieuwenhuizen, S. Stallinga, and B. Rieger. Image resolution in optical nanoscopy. In P. Verma and A. Egner, editors, Nanoimaging and Nanospectroscopy, SPIE Conference vol. 8815, page 881508, San Diego, USA, Augustus 26-30 2013. doi: 10.1117/12.2025352. |
[1716] | R.P.J. Nieuwenhuizen, S. Stallinga, and B. Rieger. Cell Membrane Nanodomains: from Biochemistry to Nanoscopy, chapter Visualization and Resolution in Localization Microscopy. Taylor and Francis, 2014. |
[1717] | N. Nikolaidis and I. Pitas. Nonlinear processing and analysis of angular signals. IEEE Transactions on Signal Processing, 46(12):3181-3194, December 1998. |
[1718] | M. Nirmal, B.O. Dabbausi, M.G. Bawendi, J.J. Macklin, J.K. Trautman, T.D. Harris, and L.E. Brus. Fluorescience intermittency in single cadmium selenide nanocrystals. Nature, 383(6603):802-805, 1996. |
[1719] | M. Nitzberg and T. Shiota. Nonlinear image filtering with edge and corner enhancement. IEEE Transactions on Pattern Analysis and Machine Intelligence, 14(8):826-833, August 1992. |
[1720] | Sanjun Niu. A Label-free, Fluorescence Based Assay for Microarray. PhD thesis, Virginia Polytechnic Institute and State University, 2004. |
[1721] | A. Noble. Finding corners. Image and Vision Computing, 6(2):121-128, May 1988. |
[1722] | E. Nogales and N. Grigorieff. Molecular machines: Putting the pieces together. Journal of Cell Biology, 152:F1-F10, 2-1. |
[1723] | T. Nomaguchi, T. Kawasaki, Y. Kimura, and Y. Takai. Separation of linear and non-linear imaging components in high-resolution transmission electron microscope images. Journal of Electron Microscopy, 53:403-406, 2004. |
[1724] | S. van Noorden, M.W.A. Caan, M. van der Graaf, L.J. van Vliet, and F.M. Vos. A comparison of the cingulum in amyotrophic lateral sclerosis using kernel matchin. In T. T. Jiang, N. Navab, J.P.W. Pluim, and M.A. Viergever, editors, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010, LNCS 6362, pages 249-256, Beijing, China, September 20-24 2010. Springer. |
[1725] | K. Nordberg. Signal representation and signal processing using operators. Technical report, Linköping University, Linköping, Sweden, 1992. LiTH-ISY-I-1387. |
[1726] | K. Nordberg. Signal Representation and Processing using Operator Groups. PhD thesis, Linköping University, Linköping, Sweden, 1994. |
[1727] | K. Nordberg, G.H. Granlund, and H. Knutsson. Representation and learning of invariance. Technical Report LiTH-ISY-I-1552, Linköping University, 1994. |
[1728] | K. Nordberg, H. Knutsson, and G.H. Granlund. Signal representation using operators. Technical report, Linköping University, 1992. LiTH-ISY-I-1342. |
[1729] | K. Nordberg, H. Knutsson, and G.H. Granlund. On the invariance of the orientation and the tensor field representation. Technical report, Linköping University, Linköping, Sweden, 1993. LiTH-ISY-R-1530. |
[1730] | K. Nordberg, H. Knutsson, and G.H. Granlund. Local curvature from gradients of the orientation tensor field. Technical report, Linköping University, Linköping, Sweden, 1995. LiTH-ISY-R-1783. |
[1731] | C.T. Nottbohm, A. Beyer, A.S. Sologubenko, I. Ennen, A. Hütten, H. Rösner, W. Eck, J. Mayer, and Gölzhäuser. Novel carbon nanosheets as support for ultrahigh-resolution structural analysis of nanoparticles. Ultramicroscopy, 108:885-892, 2008. |
[1732] | K. Nummiaro, E. Koller-Meier, and L. van Gool. An adaptive color-based particle filter. Image and Vision Computing, 21(1):99-110, 2003. |
[1733] | NVIDIA. Compute unified device architecture (cuda), 2007. http://www.nvidia.com. |
[1734] | H. Nyquist. Certain topics in telegraph transmission theory. Transactions of the AIEE, pages 617-644, 1928. [reprinted in: Proceedings of the IEEE, vol. 90, no. 2, pp. 280-305, February 2002]. |
[1735] | I. Nyström, G. Sanniti di Baja, and S. Svensson. Curve skeletonization by junction detection in surface skeletons. In C. Arcelli, L.P. Cordella, and G. Sanniti di Baja, editors, IWVF4, 4th International Workshop on Visual Form, volume 2059 of Lecture Notes on Computer Science, pages 229-238. Springer-Verlag, 2001. |
[1736] | R.J. Ober, Z. Lin, and Q. Zou. Calculations of the fisher information matrix for multidimensional data sets. IEEE Transactions on Signal Processing, 51(10):2679-2691, 2003. |
[1737] | R.J. Ober, S. Ram, and S.E. Ward. Localization accuracy in single-molecule microscopy. Biophysical Journal, 86(2):1185-1200, 2004. |
[1738] | R.J. Ober and E.S. Ward. Estimation tool, 2009. University of Texas, Southwestern http://www4.utsouthwestern.edu/wardlab. |
[1739] | M.R. Oberholzer, N.J. Wagner, and Abraham M. Lenhoff. Grand canonical brownian dynamics simulation of colloidal adsorption. Journal of Chemical Physics, 107(21):9157-9167, 1997. |
[1740] | R.M. O'Conner and J.T. Fredrich. Microscale flow modeling in geologic materials. Phys. Chem. Earth (A), 24(7):611-616, 1999. |
[1741] | C.O. Ocuna. Texture modeling using Gibbs distribution. CVGIP: Graphical Models and Image Processing, 54(3):210-222, May 1992. |
[1742] | Theo Odijk. Polyelectrolytes near the Rod Limit. Journal of Polymer Science: Polymer Physics Edition, 15:477-483, 1977. |
[1743] | Theo Odijk. On the Ionic-Strength Dependence of the Intrinsic Viscosity of DNA. Biopolymers, 18:3111-3113, 1979. |
[1744] | Theo Odijk. Note on DNA grafted to a surface (experiments Heidi Dietrich, TU Delft), August 4, 2005 2005. |
[1745] | Theo Odijk. Private communication, 05 September 2008 2008. |
[1746] | E. Oho, Y. Hoshino, and T. Ogashiwa. New generation scanning electron microscopy technology based on the concept of active image processing. Scanning, 19(7):483-488, 1997. |
[1747] | E. Oho and K. Toyomura. Strategies for optimum use of superposition diffractogram in scanning electron microscopy. Scanning, 23(5):351-356, 2001. |
[1748] | A.M. van Oijen, J. Köhler, J. Schmidt, M. Müller, and G.J. Brakenhoff. 3-dimensional super-resolution by spectrally selective imaging. Chemical Physics Letters, 292:183-187, 1998. |
[1749] | H. Okamoto. Subnanometre single-molecule localization, registration and distance measurements. Physical Review A, 38:043807, 2010. |
[1750] | S. Okayama, S. Haraichi, and H. Matsuhata. Reference sample for the evaluation of SEM image resolution at a high magnification - nanometer-scale Au particles on an HOPG substrate. Journal of Electron Mircoscopy, 54(4):345-350, 2005. |
[1751] | M.A. O'Keefe. 'resolution' in high-resolution electron microscopy. Ultramicroscopy, 47:282-297, 1992. |
[1752] | B.H. Okker. Contour continuation using space variant mathematical morphology. Master's thesis, Delft University of Technology, January 2003. |
[1753] | O. Öktem. A short overview of the COMET (constrained maximum entropy tomography) methodology for solving inverse problems. Technical report, KTH, Sweden, 2001. |
[1754] | N. Olivier, D. Debarre, and E. Beaurepaire. Dynamic aberration correction for multiharmonic microscopy. Optics Letters, 34(20):3145-3147, 1009. |
[1755] | J.-C. Olivo-Marin. Extraction of spots in biological images using multiscale products. Pattern Recognition, 35(9):1989-1996, September 2002. |
[1756] | T. Olsen and J. DeStefano. Wavelet localization of the Radon transform. IEEE Transactions on Signal Processing, 42(8):2055-2067, August 1994. |
[1757] | P. Olver, G. Sapiro, and A. Tannenbaum. Differential invariant signatures and flows in computer vision: a symmetry group approach. In Ter Haar Romeny B.M., editor, Geometry-driven diffusion in computer vision, chapter 11, pages 255-306. Kluwer Academic Publishers, 1994. |
[1758] | F. öm, M. Felsberg, and R. Lenz. Color persistent anisotropic diffusion of images. In A. Heyden and F. Kahl, editors, Image Analysis, Lecture Notes in Computer Science 6688, pages 262-272, Heidelberg, 2011. Springer. |
[1759] | B. O'Neill. Elementary Differential Geometry. Academic Press, New York, 1997. |
[1760] | A.V. Oppenheim, A.S. Willsky, and I.T. Young. Signals and Systems. Prentice-Hall International, London, 1983. |
[1761] | A.V. Oppenheim, A.S. Willsky, and I.T. Young. Signals and Systems. Prentice-Hall, 1983. |
[1762] | E.V. Orlova, P. Dube, J.R. Harris, E. Beckman, F. Zemlin, J. Markl, and M. van Heel. Structure of keyhole limpet hemocyanin type 1 (klh1) at 15 a resolution by electron cryomicroscopy and angular reconstitution. Journal of Molecular Biology, 271(3):417-437, 1997. |
[1763] | R.S. Orr. The order of computation for finite discrete gabor transforms. IEEE Transactions on Signal Processing, 41(1):122-130, January 1993. |
[1764] | V. Ortalan, M. Herra, D.G. Morgan, and N.D. Browning. Application of image processing to stem tomography of low-contrast materials. Ultramicroscopy, 110:67-81, 2009. |
[1765] | S. Osher and L.I. Rudin. Feature-oriented image enhancement using shock filters. SIAM J. Numer. Anal., 27(4):919-940, August 1990. |
[1766] | S. Osher and J.A. Sethian. Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations. Journal of Computational Physics, 79:12-49, 1988. |
[1767] | Y. Oshima and et al. Direct imaging of lithium atoms in LiV2O4 by spherical aberration-corrected electron microscopy. Journal of Electron Microscopy, pages 1-5, 2010. |
[1768] | J. Oton, C.O.S. Sorzano, E. Pereiro, J. Cucenca-Alba, R. Navarro, J.M. Carazo, and R. Marabini. Image formation in cellular X-ray microscopy. Journal of Structural Biology, 178:29-37, 2012. |
[1769] | N. Otsu. A threshold selection method from gray-level histograms. IEEE Transactions on Systems, Man and Cybernetics, 9:62-66, 1979. |
[1770] | M.T. Otten and W.M.J. Coene. High-resolution imaging on a field emission TEM. Ultramicroscopy, 48:77-91, 1993. |
[1771] | Matthias Otto, Jochen Eckert, and Thomas A. Vilgis. Persistence lengths of semiflexible chains - Methods and approximations. Macromolecular Theory and Simulations, 3(3):543-555, 1994. |
[1772] | R.R.D. Oudejans, R. Verheijen, F.C. Bakker, J.C. Gerrits, M. Steinbrcker, and P.J. Beek. Errors in judging 'offside' in football. Nature, 404:33, 2000. |
[1773] | R.A. Owens. Feature-free images. Pattern Recognition Letters, 15:35-44, January 1994. |
[1774] | Duhamel. P. and M. Vetterli. Fast Fourier transforms: a tutorial review and a state of the art. Signal Processing, 19:259-299, 1990. |
[1775] | A.W. Paeth. A fast algorithm for general raster rotation. In M. Green, editor, Graphics Interface '86, pages 77-81, 1986. |
[1776] | D.H. Paik, Y. Seol, W.A. Halsey, and T.T. Perkins. Integrating a high-force optical trap with gold nanoposts and a robust gold-dna bond. Nano Letters, 9(8):2978-2983, 2009. |
[1777] | H. Pape, C. Clauser, and J. Iffland. Permeability prediction based on fractal pore-space geometry. Geophysics, 64(5):1447-1460, September/October 1999. |
[1778] | A. Papoulis. Topics in signal analysis. In International Conference on Information Sciences and Systems, pages 247-249, Patras, Greece, August 1976. |
[1779] | A. Papoulis. Signal Analysis. McGraw-Hill, New York, 1977. |
[1780] | A. Papoulis and S.U. Pillai. Probability, Random Variables and Stochastic Processes. McGraw-Hill, fourth edition, 2002, 1965. |
[1781] | Athanasios Papoulis. Probability, random variables, and stochastic processes. McGraw-Hill series in electrical engineering, Communications and signal processing. McGraw-Hill, Singapore, Third edition edition, 1991. |
[1782] | P. Parent and S.W. Zucker. Trace inference, curvature consistency, and curve detection. IEEE Transactions on Pattern Recognition and Machine Intelligence, 11(8):823-839, August 1989. |
[1783] | L. Parida, D. Geiger, and R. Hummel. Junctions: Detection, classification, and reconstruction. IEEE Transactions on Pattern Recognition and Machine Intelligence, 20(7):687-698, July 1998. |
[1784] | H. Park, T. Hanson, S.R. Duff, and P.R. Selvin. Nanometre localization of single ReAsH molecules. Journal of Microscopy, 216(3):199-205, 2004. |
[1785] | H.S. Park, J.S. Baskin, B. Barwick, O.H. Kwon, and A.H. Zewail. 4d ultra fast electron microscopy: Imaging of atomic motions, acoustic resonances, and moire fringe dynamics. Ultramicroscopy, 110:7-19, 2009. |
[1786] | K.-R. Park and C.-N. Lee. Scale-space using mathematical morphology. IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(11):1121-1126, 1996. |
[1787] | I. Parmryd, J. Adler, R. Patel, and A.I. Magee. Imaging metabolism of phosphatidylinositol 4,5-bisphosphate in t-cell gm1-enriched domains containing ras proteins. Experimental Cell Research, 285(1):27-38, 2003. |
[1788] | R. Parthasarathy. Rapid, accurate particle tracking by calculation of radial symmetry centers. Nature Methods, 9(7):724-726, 2012. |
[1789] | D. Patra, I. Gergor, and J. Enderlein. Defocused imaging of quantum-dot angular distribution of radiation. Applied Physics Letters, 87:101103, 2005. |
[1790] | G.H. Patterson, S.M. Knobel, W.D. Sharif, S.R. Kain, and D.W. Piston. Use of green fluorescent protein and its mutants in quantitative fluorescence microscopy. Biophysical Journal, 73(5):2782-2790, 1997. |
[1791] | A. Patwardhan. Coherent, non-planar illumination of a defocused specimen: consequences for transmission electron microscopy. Optik, 13(1):4-12, 2002. |
[1792] | E.J. Pauwels, L.J. van Gool, P. Fiddelaers, and T. Moons. An extended class of scale-invariant and recursive scale space filters. IEEE Transactions on Pattern Analysis and Machine Intelligence, 17(7):691-701, July 1995. |
[1793] | S.R.P. Pavani and R. Piestun. Three dimensional tracking of fluorescent microparticles using a photon-limited double-helix response system. Optics Express, 16(26):22048-22057, 2008. |
[1794] | K.S. Pedersen and M. Nielsen. The Hausdorff dimension and scale-space normalization of natural images. Journal of Visual Communication and Image Representation, 11:266-277, 2000. |
[1795] | C.-H. Peh and Loong-Fah Cheong. Synergizing spatial and temporal texture. IEEE Transactions on Image Processing, 11(10):1179-1191, 2002. |
[1796] | S.-C. Pei, J.-J. Ding, and J.-H. Chang. Efficient implementation of quaternion fourier transform, convolution, and correlation by 2d complex fft. IEEE Transactions on Signal Processing, 49(11):2783-2797, 2001. |
[1797] | S.-C. Pei and L.-G. Liou. Using moments to acquire the motion parameters of a deformable object without correspondence. Image and Vision Computing, 12(8):475-485, 1994. |
[1798] | S.-C. Pei and M.-H. Yeh. An introduction to discrete finite frames. Signal Processing Magazine, pages 84-96, November 1997. |
[1799] | P.A. Penczek. Resolution measures in single particle analysis. 2002. |
[1800] | P.A. Penczek. Three-dimensional spectral signal-to-noise ratio for a class of reconstruction algorithms. Journal of Structural Biology, 138:34-46, 2002. |
[1801] | P.A. Penczek. Resolution Measures in Molecular Electron Microscopy, volume 482. Academic Press, 2010. p 73-100. |
[1802] | Y. Peng, P.D. Nellist, and S.J. Pennycook. HAADF-STEM imaging with sub-ångstrom probes, a full bloch wave analysis. Journal of Electron Microscopy, 53:257, 2004. |
[1803] | T. Pengo. PALM-siever: Visualization and analysis platform for single-molecule localization microscopy, 2013. [Online; accessed 12-September-2013]. [ http ] |
[1804] | S.J. Pennycook and L.A. Boatner. Chemically sensitive structure imaging with a scanning transmission electron microscope. Nature, 336:565, 1988. |
[1805] | S.J. Pennycook and D.E. Jesson. High-resolution incoherent imaging of crystals. Physical Review Letters, 64:938, 1990. |
[1806] | S.J. Pennycook, A.R. Lupini, A. Borisevich, M. Varela, Y. Peng, P.D. Nellist, G. Duscher, R. Buczko, and S.T. Pantelides. Transmission electron microscopy: Overview and challenges. In Characterization and Metrology for ULSI Technology, volume 683 of AIP Conference, page 627. American Institute of Physics, 2003. |
[1807] | S.J. Pennycook, A.R. Lupini, M. Varela, A. Borisevich, Y. Peng, and P.D. Nellist. Quantum mechanical resolution limits to imaging and spectroscopy in the transmission electron microscope. In J. McGuire, editor, From the Atomic to the Nano Scale, page 126. Old Dominion Universtity, 2003. |
[1808] | S.J. Pennycook, B. Rafferty, and P.D. Nellist. Z-contrast imaging in an aberration-corrected scanning transmission electron microscope. Microscopy and Microanalysis, 6:343, 2000. |
[1809] | R. Penrose. A generalized inverse for matrices. Proceedings of the Cambridge Philosophical Society, 51:406-413, 1955. |
[1810] | R. Penrose. On best approximate solution of linear matrix equations. Proceedings of the Cambridge Philosophical Society, 52:17-19, 1956. |
[1811] | G. Perfetti, E. van de Casteele, B. Rieger, W.J. Wildeboer, and G.M.H. Meesters. X-ray micro tomography and image analysis as complementary methods for morphological characterization and coating thickness measurement of coated particles. Advanced Powder Technology, 21:663-675, 2010. |
[1812] | Thomas T. Perkins, Stephern R. Quake, Douglas E. Smith, and Steven Chu. Relaxation of a Single DNA Molecule Observed by Optical Microscopy. Science, 264:822-826, 1994. |
[1813] | P. Perona. Deformable models for early vision. IEEE Transactions on Pattern Analysis and Machine Intelligence, 17(5):488-499, May 1995. |
[1814] | P. Perona. Orientation diffusions. IEEE Transactions on Image Processing, 7(3):457-467, March 1998. |
[1815] | P. Perona and J. Malik. Scale-space and edge detection using anisotropic diffusion. IEEE Transactions on Pattern Analysis and Machine Intelligence, 12(7):629-639, July 1990. |
[1816] | A. Pertsinidis, Y. Zhang, and S. Chu. Subnanometre single-molecule localization, registration and distance measurements. Nature, 466:647-651, 2010. |
[1817] | Kevin A. Peterlinz, Rosina M. Georgiadis, Tonya M. Herne, and Michael J. Tarlov. Observation of Hybridization and Dehybridization of Thiol-Tethered DNA Using Two-Color Surface Plasmon Resonance Spectroscopy. Journal of the American Chemical Society, 119:3401-3402, 1997. |
[1818] | Inge M. Peters, Bart G. de Grooth, Juleon M. Schins, Carl G. Figdor, and Jan Greve. Three dimensional single-particle tracking with nanometer resolution. Review of Scientific Instruments, 69(7):2762-2766, 1998. |
[1819] | P.J. Peters, M. Vey, E. van Donselaar, A. Jr. Mironov, S. Erpel, D. Peretx, E. Lexlerc, S.J. DeArmond, D.R. Burton, R.A. Williamson, and S.B. Prusiner. Trafficking of prion proteins through a novel caveolae-mediated endosomal pathway. Journal of Cell Biology, 162:703-717, 2001. |
[1820] | N. Petersen, P.L. Hoddelius, P. Wiseman, O. Seger, and K. Magnusson. Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application. Biophys. J., 65:1135-1146, 1993. |
[1821] | T.Q. Pham, M. Bezuijen, L.J. van Vliet, K. Schutte, and C.L. Luengo Hendriks. Performance of optimal registration estimators. In Z. Rahman, R.A. Schowengerdt, and S.E. Reichenbach, editors, Visual Information Processing XIV, volume 5817 of Proceedings of SPIE Defense & Security, pages 133-144, Orlando, USA, March 29-30 2005. |
[1822] | T.Q. Pham and L.J. van Vliet. Normalized averaging using adaptive applicability functions with applications in image reconstruction from sparsely and randomly sampled data. In J. Bigün and T. Gustavsson, editors, SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis (Göteborg, Sweden), LNCS 2749, pages 485-492, Berlin, June 29 -July 2 2003. Springer-Verlag. |
[1823] | T.Q. Pham, L.J. van Vliet, and K. Schutte. Robust fusion of irregularly sampled data using adaptive normalized convolution. EURASIP Journal on Applied Signal Processing, pages 1-12, 2006. |
[1824] | A. Philippsen, H.-A. Engel, and A. Engel. The contrast-imaging function for tilted specimens. Ultramicroscopy, 107:202-212, 2007. |
[1825] | K. Piche, J. Leach, A.S. Johnson, J.Z. Salvail, M.I. Kolobov, and R.W. Boyd. Experimental realization of optical eigenmode super-resolution. Optics Express, 20(24):26424-26433, 2012. |
[1826] | J.D. Picka. Variance-Reducing Modifications for Estimators of Dependence in Random Sets. PhD thesis, University of Chicago, Chicago, USA, December 1996. |
[1827] | C.M. Pieper and J. Enderlein. Fluorescence correlation spectroscopy as a tool for measuring the rotational diffusion of macromolecules. Chemical Physics Letters, 516:1-11, 2011. |
[1828] | R. Pike, D. Presotto, S. Dorward, B. Flandrena, K. Thompson, H. Trickey, and P. Winterbottom. Plan 9 from Bell labs. Computing Systems, 8(3):221-254, 1995. |
[1829] | Michael C. Pirrung. How to Make a DNA Chip. Angewandte Chemie International Edition, 41(8):1276-1289, 2002. |
[1830] | S.M. Pizer, T.J. Cullip, and R.E. Fredericksen. Toward interactive object definition in 3d scalar images. Technical report, University of North Carolina, U.S.A., 1990. TR90-034. |
[1831] | J.R. Plaisier, L. Jiang, and J.P. Abrahams. Cyclops: New modular software suite for cryo-em. Journal of Strcutural Biology, 157:19-27, 2007. |
[1832] | J.P.W. Pluim, J.B.A. Maintz, and M.A. Viergever. Mutual-information-based registration of medical images: a survey. IEEE Transactions on Medical Imaging, 22:986-1004, 2003. |
[1833] | Maksymilian Pluta. Advanced Light Microscopy, volume 1: Principles and Basic Properties. Elsevier, Amsterdam, 1988. |
[1834] | Maksymilian Pluta. Advanced Light Microscopy, volume 2: Specialized Methods. Elsevier, Amsterdam, 1989. |
[1835] | F. Podczeck. A shape factor to assess the shape of particles using image analysis. Powder Technology, 93:47-53, 1997. |
[1836] | A.P. Pogany and P.S. Turner. Reciprocity in electron diffraction and microscopy. Acta Crystallography A, 24:103-109, 1968. |
[1837] | A.J. Pomfret, W.J. Rice, and D.L. Stokes. Application of the iterative helical real-space reconstruction method to large membranous tubular crystals of p-type atpases. Journal of Strcutural Biology, 157:106-116, 2007. |
[1838] | M.N. Pons, H. Vivier, K. Belaroui, B. Bernard-Michel, F. Cordier, D. Oulahana, and J.A. Dodds. Particle morphology: from cisulatisation to measurement. Powder Technology, 103:44-57, 1999. |
[1839] | B. Porat. Digital Signal Processing of Random Signals. Prentice Hall, 1994. |
[1840] | B. Porat. Digital Signal Processing of Random Signals: Theory and Methods, chapter 11.4. Prentice Hall, 1994. |
[1841] | G. Porod. X-ray and light scattering by chain molecules in solution. Journal of Polymer Science, 10(2):157-166, 1953. |
[1842] | Dietmar Porschke. Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations. Biophysical Chemistry, 40:169-179, 1991. |
[1843] | J.N. Post, K.A. Lidke, B. Rieger, and D.J. Arndt-Jovin. One- and two-photon photoactivation of a paGFP-fusion protein in live Drosophila embryos. FEBS Letters, 579(2):325-330, 2005. |
[1844] | L. Pothuaud, P. Porion, E. Lespessailles, C.L. Benhamou, and P. Levitz. A new method for three-dimensional skeleton graph analysis of porous media: Application to trabecular bone microarchitecture. Journal of Microscopy, 199, Pt 2:149-161, August 2000. |
[1845] | C.S. Potter, H. Chu, B. Frey, C. Green, N. Kisseberth, T.J. Madden, K.L. Miller, K. Nahrstedt, J. Pulokas, A. Reilein, D. Tcheng, D. Weber, and B. Carragher. Leginon: a system for fully automated acquisition of 1000 electron micrographs a day. Ultramicroscopy, 77:153-161, 1999. |
[1846] | C.S. Potter, J. Pulokas, P. Smith, C. Suloway, and B. Carragher. Robotic grid loading system for a transmission electron microscope. Journal of Structural Biology, 146:431-440, 2004. |
[1847] | Noelle Pouget, Cynthia Dennis, Catherine Turlan, Mikhail Grigoriev, Michael Chandler, and Laurence Salome. Single-particle tracking for DNA tether length monitoring. Nucleic Acids Research, 32(9), 2004. |
[1848] | A.D. Poularikas (ed). The Transforms and Applications Handbook. CRC Press, 1996. |
[1849] | June I. Pounder, Wade K. Aldous, and Gail L. Woods. Comparison of real-time polymerase chain reaction using the Smart Cycler and the Gen-Probe amplified Mycobacterium tuberculosis direct test for detection of M. tuberculosis complex in clinical specimens . Diagnostic Microbiology and Infectious Disease, 54(3):217-222, 2006. |
[1850] | C. Poynton. Frequently asked questions about color. http://www.inforamp.net/ poynton, 1999. |
[1851] | P. Prabhat, S. Ram, E.S. Ward, and R.J. Ober. Simultaneous imaging of different focal planes in fluorescence microscopy for the study of cellular dynamics in three dimensions. IEEE Transactions on Nanobioscience, 3(4):237-242, 2004. |
[1852] | Prashant Prabhat, Zhuo Gan, Jerry Chao, Sripad Ram, Carlos Vaccaro, Steven Gibbons, Raimond J. Ober, and E. Sally Ward. Elucidation of intracellular recycling pathways leading to exocytosis of the Fc receptor, FcRn, by using multifocal plane microscopy. Proceedings of the National Academy of Sciences of the USA, 104(14):5889-5894, 2007. |
[1853] | Prashant Prabhat, Sripad Ram, E. Sally Ward, and Raimond J. Ober. Simultaneous imaging of several focal planes in fluorescence microscopy for the study of cellular dynamics in 3D. In Jose-Angel Conchello, Carol J. Cogswell, and Tony Wilson, editors, Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIII, volume 6090, page 60900L. Proceedings of SPIE, 2006. |
[1854] |
A. Pralle, M. Prummer, E.-L Florin, E.H.K. Stelzer, and J.K.H. H örber. Three-Dimensional High-resolution Particle Tracking for Optical Tweezers by Forward Scattered Light. Microscopy Research and Technique, 44(5):378-386, 1999. |
[1855] | W.K. Pratt. Generalized Wiener filtering computation techniques. IEEE Trans. Comput., C-21:297-303, 1972. |
[1856] | W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flannery. Numerical Recipes in C: The Art of Scientific Computing. Cambridge University Press, Cambridge, 2 edition, 1992. |
[1857] | Dennis C. Prieve and Nasser A. Frej. Total Internal Reflection Microscopy: a Tool for Measuring Colloidal Forces. Langmuir, 6(2):396-403, 1990. |
[1858] | Dennis C. Prieve and John Y. Walz. Scattering of an evanescent surface wave by a microscopic dielectric sphere. Applied Optics, 32(9), 1993. |
[1859] | J. Princen, J. Illingworth, and J. Kittler. A formal definition of the Hough transform: Properties and relationships. Journal of Mathematical Imaging and Vision, 1:153-168, 1992. |
[1860] | J. Princen, J. Illingworth, and J. Kittler. Hypothesis testing: A framework for analyzing and optimizing Hough transform performance. IEEE Transactions on Pattern Analysis and Machine Intelligence, 16(4):329-341, April 1994. |
[1861] | M. Proesmans, P. Pauwels, and L. van Gool. Coupled geometry-driven diffusion equations for low-level vision. In Ter Haar Romeny B.M., editor, Geometry-driven diffusion in computer vision, chapter 9, pages 191-228. Kluwer Academic Publishers, 1994. |
[1862] | J. Pulokas, C. Green, N. Kisseberth, C.S. Potter, and B. Carragher. Improving the positional accuracy of the goniometer on the Philips CM series TEM. Journal of Structural Biology, 128:250-256, 1999. |
[1863] | P.N. Pusey. Brownian motion goes ballistic. Science, 332:802-803, 2011. |
[1864] | E.G. van Putten, D. Akbulut, J. Bertolotti, W.L. Vos, A. Lagendijk, and A.P. Mosk. Scattering lens resolves sub-100 nm structures with visible light. Physical Review Letters, 106:193905, 2011. |
[1865] | P. Pyenta, P. Schwille, W. Webb, D. Holowka, and B. Baird. Lateral diffusion of membrane lipid-anchored probes before and after aggregation of cell surface ige-receptors. J. Phys. Chem. A, 107:8310-8318, 2003. |
[1866] | H. Qian and E.L. Elson. Quantitative study of polymer conformation and dynamics by single-particle tracking. Biophysical Journal, 78:1598-1805, 1999. |
[1867] | H. Qian and E.L. Elson. Single-particle tracking: Brownian dynamics of viscoelastic materials. Biophysical Journal, 79:137-143, 2000. |
[1868] | H. Qian, M.P. Sheetz, and E.L. Elson. Single particle tracking; analysis of diffusion flow in two-dimensional systems. Biophysical Journal, 60:910-921, 1991. |
[1869] | Hong Qian. A mathematical analysis for the Brownian dynamics of a DNA tether. Journal of Mathematical Biology, 41(4):331-340, 2000. |
[1870] | Hong Qian. Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials. Biophysical Journal, 79(1):137-143, 2000. |
[1871] | Z. Qian, C. Lu, M. An, and R. Tolimieri. Self-sorting in-place FFT algorithm with minimum working space. IEEE Transactions on Signal Processing, 42(10):2835-2836, October 1994. |
[1872] | X. Qu, D. Wu, L. Mets, and N.F. Scherer. Nanometer-localized multiple single-molecule fluorescence microscopy. Proceedings of the National Academy of Science USA, 101(31):11298-11303, 2004. |
[1873] | J. Quintanilla and S. Torquato. Clustering in a continuum percolation model. Adv. Appl. Probab., 29:327-336, 1997. |
[1874] | J. Quintanilla and S. Torquato. Percolation for a model of statistically inhomogeneous random media. Journal of Chemical Physics, 111(13), October 1999. |
[1875] | S. Quirin, D.S. Peterka, and R. Yuste. Instantaneous three-dimensional sensing using spatial light modulator illumination with extended depth of field imaging. Optics Express, 21(13):16007-16021, 2013. |
[1876] | L. Råde and B. Westergren. Mathematical Handbook for Science and Engineering. Springer Verlag, 4th edition, 1999. |
[1877] | C.M. Rader. Discrete Fourier transforms when the number of data samples is prime. Proceedings of the IEEE, 56(6):1107-1108, June 1968. |
[1878] | J. Radon. Über die Bestimmung von Funktionen durch ihre Integralwerte längs gewisser Mannigfaltigkeiten. Berichte Sächsische Akademie der Wissenschaften, Leipzig, Mathematisch-Physikalische Klasse, 69:262-277, 1917. |
[1879] | B. Rafferty and L.M. Brown. Direct and indirect transitions in the region of the band gap using electron-energy-loss spectroscopy. Physical Review B, 58(16):10326-10337, 1998. |
[1880] | B. Rafferty, P.D. Nellist, and S.J. Pennycook. On the origin of transverse incoherence in Z-constrast STEM. Journal of Electron Microscopy, 50(3):227-233, 2001. |
[1881] | I.R. Ragnemalm. Neighborhoods for distance transformation using ordered propagation. CVGIP: Image Understanding, 56(3):399-409, November 1992. |
[1882] | E.S. Rajagopal. Statistical theory of particle size distributions in emulsions and suspensions. Kolloid-Zeitschrift, 162(2):85-92, February 1959. |
[1883] | S. Ram, P. Prabhar, J. Chao, E.S. Ward, and R.J. Ober. High accuracy 3d quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells. Biophysical Journal, 95(12):6025-6043, 2008. |
[1884] | S. Ram, P. Prabhat, E.S. Ward, and R.J. Ober. Improved single particle localization accuracy with dual objective multifocal plane mircoscopy. Optics Express, 17(8):6881-6898, 2009. |
[1885] | S. Ram, E.S. Ward, and R.J. Ober. Beyond Rayleighs criterion: A resolution measure with application to single-molecule microscopy. Proceedings of the National Academy of Sciences USA, 103(12):4457-4462, 2006. |
[1886] | Sripad Ram, Jerry Chao, Prashant Prabhat, E. Sally Ward, and Raimond J. Ober. A novel approach to determining the three-dimensional location of microscopic objects with applications to 3D particle tracking. In Jose-Angel Conchello, Carol J. Cogswell, and Tony Wilson, editors, Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIV, volume 6443, page 64430D. Proceedings of SPIE, 2007. |
[1887] | Sripad Ram, E. Sally Ward, and Raimond J. Ober. How accurately can a single molecule be localized in three dimensions using a fluorescence microscope? In Imaging, Manipulation and Analysis of Biomolecule and Cells: Fundamentals and Applications III, volume 5699 of Proceedings of SPIE, pages 426-435, 2005. |
[1888] | Q.M. Ramasse and A.L. Bleloch. Wavelet image analysis in aberration-corrected scanning transmission electrion microscopy. In Elextron Microscopy and Analysis Group Conference EMAG2003 (Oxford, UK), pages 343-345. IOP Publishing Ltd, 2003. |
[1889] | Q.M. Ramasse and A.L. Bleloch. Diagnosis of aberrations from crystalline samples in aberration corrected STEM. In 13th European Microscopy Congress EMC 2004 (August 22-27, Antwerpen, Belgium), pages 1-2. European Microscopy Society, 2004. |
[1890] | Q.M. Ramasse and A.L. Bleloch. Diagnosis of aberrations from crystalline samples in scanning transmission electron microscopy. Ultramicroscopy, 2005. |
[1891] | T. Randen and H. Husœy. Filtering for texture classification: A comparative study. IEEE Transactions on Pattern Analysis and Machine Intelligence, 21(4):291-310, April 1999. |
[1892] | N.A. Ranson, G.W. Farr, A.M. Roseman, B. Gowen, W.A. Fenton, A.L. Horwich, and H.R. Saibil. ATP-bound states of GroEL captured by cryo-electron microscopy. Cell, 107:869-879, 2001. |
[1893] | A.R. Rao and R.C. Jain. Computerized flow field analysis: Oriented texture fields. IEEE Transactions on Pattern Analysis and Machine Intelligence, 14(7):693-709, July 1992. |
[1894] | A.R. Rao and B.G. Schunck. Computing oriented texture fields. CVGIP: Graphical Models and Image Processing, 53(2):157-185, March 1991. |
[1895] | R. Rao. Encyclopedia of Imaging Science and Technology, volume 2, chapter Wavelet Transforms, pages 1444-1450. John Wiley&Sons, 2002. |
[1896] | I. Rasnik, S. A. McKinney, and T. Ha. Nonblinking and longlasting single-molecule fluorescence imaging. Nature Methods, 3(11):891-893, 2006. |
[1897] | P.A. Rattey and A.G. Lindgren. Sampling the 2-D Radon transform. IEEE Transactions on Acoustics, Speech and Signal Processing, 29(5):994-1002, October 1981. |
[1898] | E.I. Rau and V.N.E. Robinson. An annular toroidal backscattered electron energy analyser for use in scanning electron microscopy. Scanning, 18:556-561, 1996. |
[1899] | W.D. Rau, P. Schwander, F.H. Baumann, W. Hoeppner, and A. Ourmazd. Two-dimensional mapping of the electrostatic potential in transistors by electron holography. Physical Review Letters, 82(12):2614-2617, 1999. |
[1900] | C. Raven. Numerical removal of ring artefacts in microtomography. Review of Scientific Instruments, 69(8):2978-2980, 1998. |
[1901] | Lord Rayleigh. On the problem of random vibrations, and of random flights in one, two, or three dimensions. Philosophical Magazine, 37:321-347, 1919. |
[1902] | Kristian Rechendorff, Guillaume Witz, Jozef Adamcik, and Giovanni Dietler. Persistence length and scaling properties of single-stranded DNA adsorbed on modified graphite. Journal of Chemical Physics, 131(9):095103, 2009. |
[1903] | C. Redon, L. Chermant, J.-L. Chermant, and M. Coster. Assessment of fibre orientation in reinforced concrete using Fourier image transform. Journal of Microscopy, 191 Pt 3:258-265, September 1998. |
[1904] | M.G. Reed and C.V. Howard. Stereological estimation of covariance using linear dipole probes. Journal of Microscopy, 195, Pt 2:96-103, August 1999. |
[1905] | T.R. Reed and H. Wechsler. Segmentation of textured images and gestalt organization using spatial/spatial-frequency representations. IEEE Transactions on Pattern Analysis and Machine Intelligence, 12(1):1-12, January 1990. |
[1906] | E.J. Rees, M. Erdelyi, D. Pinotsi, A. Knight, D. Metcalf, and C.F. Kaminski. Blind assessment of localisation microscope image resolution. Optical Nanoscopy, 1:12, 2012. |
[1907] | S.E. Reichenbach, S.K. Park, and R. Narayanswamy. Characterizing digital image acquisition devices. Optical Engineering, 30:170-177, 1991. |
[1908] | L. Reimer. Transition Electron Microscopy. Springer Verlag, Berlin, 4th edition, 1997. sold out, reprint 2006. |
[1909] | F. Reinders. Feature-Based Visualization of Time-Dependent Data. PhD thesis, Delft University of Technology, The Netherlands, 2001. |
[1910] | J.H. Reisner. An early history of the electron microsope in the united states. Adavances in electronics and electron physics, 73 edition, 1989. sold out, reprint 2006. |
[1911] | Wolfram Research. Mathematica 4, 1998. www.wolfram.com. |
[1912] | D. Rhinow and W. Kuhlbrandt. Electron cryo-microscopy of biological specimens on conductive titanium-silicon metal glass films. Ultramicroscopy, 108:698-705, 2008. |
[1913] | B. Richards and E. Wolf. Electromagnetic diffraction in optical systems. II. structure of the image field in an aplanatic system. Proceedings of the Royal Society of London A, 253(1274):358-379, 1959. |
[1914] | D. de Ridder, J. Kittler, and R.P.W. Duin. Probabilistic PCA and ICA subspace mixture models for image segmentation. In M. Mirmehdi and B. Thomas, editors, Proceedings British Machine Vision Conference 2000, pages 112-121. BMVA, Bristol, UK 2000. |
[1915] |
B. Rieger.
Structure from Motion in nD Image Analysis.
PhD thesis, Delft University of Technology, Delft, The Netherlands,
2004.
digital version available: http://www.ph.tn.tudelft.nl/Publications/PHDTheses/BRieger/thesis_rieger.html. |
[1916] | B. Rieger, H.R.C. Dietrich, L.R. van den Doel, and L.J. van Vliet. Diffusion of microspheres in sealed and open microarrays. Microscopy Research and Technique, 65(3):218-225, 2004. |
[1917] | B. Rieger, L.R. van den Doel, and L.J. van Vliet. Ring formation in nanoliter cups: Quantitative measurements of flow in micromachined wells. Physical Review E, 68(3):036312, 2003. |
[1918] | B. Rieger, C. Molenaar, R.W. Dirks, and L.J. Vliet. Alignment of the cell nucleus from labeled proteins only for 4D in vivo imaging. Microscopy Research and Technique, 64:142-150, 2004. |
[1919] | B. Rieger, C. Molenaar, R.W. Dirks, and L.J. van Vliet. Affine correction without correspondence applied to 4d cellular motion in confocal microscopy. In S. Vassiliadis, L.M.J. Florak, J.W.J Heijnsdijk, and A. van den Steen, editors, ASCI'03, Proceedings of the 9th Annual Conference of the Advanced School for Computing and Imaging (Lommel, Belgium), June 4-6 2003. |
[1920] | B. Rieger, F.J. Timmermans, and L.J. van Vliet. Estimation of curvature on surfaces in 3d grey-value images. In Proc. ASCI 2002, 8th Annual Conf. of the Advanced School for Computing and Imaging, pages 170-177, June 2002. |
[1921] | B. Rieger, F.J. Timmermans, L.J. van Vliet, and P.W. Verbeek. Curvature estimation of surfaces in 3d grey-value images. In C. Suen R. Kasturi, D. Laurendeau, editor, ICPR'02, Proc. 16th Int. Conf. on Pattern Recognition, volume 1. IEEE Computer Society, August 11-15 2002. |
[1922] | B. Rieger, F.J. Timmermans, L.J. van Vliet, and P.W. Verbeek. On curvature estimation of iso-surfaces in 3D gray-value images and the computation of shape descriptors. IEEE Transactions on Pattern Recognition and Machine Intelligence, 26(8):1088-1094, 2004. |
[1923] | B. Rieger and G.N.A. van Veen. Method to determine image sharpness and resolution in scanning electron microscopy images. In M. Luysberg, K. Tillmann, and T. Weirich, editors, EMC 2008, Vol.1: Instrumentation and Methods, pages 613-614, Berline, September 1-5 2008. Springer Verlag. |
[1924] | B. Rieger and L.J. van Vliet. Estimation of curvature of n-dimensional space curves in grey-value images. In R. Lagendijk, A. Pimentel, and M. Wilkinson, editors, Proc. ASCI 2001, 7th Annual Conf. of the Advanced School for Computing and Imaging, pages 436-442, Delft, May 30 -June 1 2001. ASCI. |
[1925] | B. Rieger and L.J. van Vliet. Curvature of n-dimensional space curves in grey-value images. IEEE Transactions on Image Processing, 11(7):738-745, 2002. |
[1926] | B. Rieger and L.J. van Vliet. Representing orientation in n-dimensional spaces. In N. Petkov and M.A. Westenberg, editors, CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands), LNCS 2756, pages 17-24, Berlin, August 25-27 2003. Springer Verlag. |
[1927] | B. Rieger and L.J. van Vliet. A systematic approach to nD orientation representation. Image and Vision Computing, 22(6):453-459, 2004. |
[1928] | B. Rieger, L.J. van Vliet, and P.W. Verbeek. Estimation of curvature based shape properties of surfaces in 3d grey-value images. In J. Bigün and T. Gustavsson, editors, SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis (Göteborg, Sweden), LNCS 2749, pages 262-267, Berlin, June 29 -July 2 2003. Springer-Verlag. |
[1929] | B. Rieger, L.J. van Vliet, and P.W. Verbeek. Continuous orientation representation for arbitrary dimensions - a generalized knutsson mapping. In A. Heyden and F. Kahl, editors, Proceedings of the 17th Scandinavian Conference on Image Analysis, SCIA 2011, LNCS 6688, pages 774-783, Heidelberg, May 23-27 2011. Springer. |
[1930] | J. Ries, C. Kaplan, E. Platonova, H. Eghlidi, and H. Ewers. A simple, versatile method for GFP-based super-resolution microscopy via nanobodies. Nature Methods, 9(6):582-587, 2012. |
[1931] | D.L. Ringach and R. Shapley. Spatial and temporal properties of illusory contours and amodal boundary completion. Vision Research, 36(19):3037-3050, 1996. |
[1932] | J. Rink, E. Ghigo, Y. Kalaidzidis, and M. Zerial. Rab conversion as a mechanism of progression from early to late endosomes. Cell, 122:735-749, 2005. |
[1933] | M.D. Rintoul and S. Torquato. Precise determination of the critical threshold and exponents in a three-dimensional continuum percolation model. J. Phys. A: Math Gen, 30:585-592, 1997. |
[1934] | O. Rioul and M. Vetterli. Wavelets and signal processing. IEEE Signal Processing Magazine, pages 14-38, October 1991. |
[1935] | B.D. Ripley. Statistical Inference for Spatial Processes. Cambridge University Press, 1988. |
[1936] | D.M. Ritchie. The evolution of the unix time-sharing system. AT&T Bell Laboratories Technical Journal, 63(6):1577-1593, October 1984. |
[1937] | D.M. Ritchie and K. Thompson. The UNIX time-sharing system. Communications of the ACM, 17(7):365-375, July 1974. |
[1938] | Ken Ritchie, Xiao-Yuan Sha, Junko Kondo, Kokoro Iwasawa, Takahiro Fujiwara, and Akihiro Kusumi. Detection of Non-Brownian Diffusion in the Cell Membrane in Single Molecule Tracking. Biophysical Journal, 88(3):2266-2277, 2005. |
[1939] | C. Rivetti and S. Codeluppi. Accurate length determination of DNA molecules visualized by atomic force microscopy: evidence for a partial B- to A-form transition on mica. Ultramicroscopy, 87(1-2):55-66, 2001. |
[1940] | C. Rivetti, M. Guthold, and C. Bustamante. Scanning force microscopy of DNA deposited onto mica: Equilibration versus kinetic trapping studied by statistical polymer chain analysis. Journal of Molecular Biology, 264:919-932, 1996. |
[1941] | C. Rivetti, C. Walker, and C. Bustamante. Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility. Journal of Molecular Biology, 280(1):41-59, 1998. |
[1942] | B. Robbins and R. Owens. 2D feature detection via local energy. Image and Vision Computing, 15(5):353-368, 1997. |
[1943] | B.J. Robbins. The Detection of 2D Image Features using Local Energy. PhD thesis, University of Western Australia, Australia, August 1996. |
[1944] | M.J. Roberti, C.W. Bertoncini, R. Klement, E.A. Jares-Erijman, and T.M. Jovin. Fluorescence imaging of amyloid formation in living cells by a functional, tetracysteine-tagged alpha-synuclein. Nature Methods, 4:345-351, 2007. |
[1945] | M.J. Roberti, T.M. Jovin, and E. Jares-Erijman. Confocal fluorescence anisotropy and frap imaging of alpha-synuclein amyloid aggregates in living cells. PLoS ONE, 6:e23338, 2011. |
[1946] | A. Roberts. Curvature attributes and their application to 3d interpreted horizons. First Break, 19(2):85-100, February 2001. |
[1947] | R.M. Robertson. Diffusion of isolated dna molecules: Dependence on length and topology. Proceedings of the National Academy of Sciences of the USA, 103(19):7310-7314, 2006. |
[1948] | K. Robinson and P.F. Whelan. Efficient morphological reconstruction: a downhill filter. Pattern Recognition Letters, 25(15):1759-1767, 2004. |
[1949] | M.D. Robinson and P. Milanfar. Fundamental performance limits in image registration. IEEE Transactions on Image Processing, 13(9):1185-1199, 2004. |
[1950] | J.V. Rocheleau, M. Edidin, and D.W. Piston. Intrasequence GFP in class I MHC molecules, a rigid probe for fluorescence anisotropy measurements of the membrane environment. Biophysical Journal, 84:4078-4086, 2003. |
[1951] | D. Rockmore. The FFT - an algorithm the whole family can use. Computing in Science & Engineering, 2(1):60-64, January/February 2000. |
[1952] | J.M. Rodenburg, A.C. Hurst, and A.G. Cullis. Transmission microscopy without lenses for objects of unlimited size. Ultramicroscopy, 107:227-231, 2006. |
[1953] | P.J. Rodrigo, V.R. Daria, and J. Glückstad. Real-time interactive optical micromanipulation of a mixture of high- and low-index particles. Optics Express, 12(7):1417-1425, 2004. |
[1954] | P.J. Rodrigo, V.R. Daria, and J. Glückstad. Four-dimensional optical manipulation of colloidal particles. Applied Physics Letters, 86(7):074103, 2005. |
[1955] | P.J. Rodrigo, V.R. Daria, and J. Glückstad. Real-time three-dimensional optical micromanipulation of multiple particles and living cells. Optics Letters, 29(19):2270-2273, 2005. |
[1956] | R. Rodriguez-Sanchez, J.A. Garcia, J. Fdez-Valdivia, and X.R. Fdez-Valdivia. Origins of illusory percepts in digital images. Pattern Recognition, 33:2007-2017, 2000. |
[1957] | Maarten B.J. Roeffaers, Gert De Cremer, Hiroshi Uji-i, Beniot Muls, Bert F. Sels, Pierre A. Jacobs, Frans C. De Schryver, Dirk E. De Vos, and Johan Hofkens. Single-molecule fluorescence spectroscopy in (bio)catalysis. Proceedings of the National Academy of Sciences of the USA, 104(31):12603-12609, 2007. |
[1958] | G.K. Rohde, A.S. Barnett, P.J. Basser, and C. Pierpaoli. Estimating intensity variance due to noise in registered images: Applications to diffusion tensor MRI. NeuroImage, 26:673-684, 2005. |
[1959] | K. Rohr. On 3d differential operators for detecting point landmarks. Image and Vision Computing, 15:219-233, 1997. |
[1960] | A. Rohrbach. Artifacts resulting from imaging in scattering media: a theoretical prediction. Optics Letters, 34(19):3041-3043, 2009. |
[1961] | P.M. Rojo and J. Harrington. A method to remove fringes from images using wavelets. The Astrophysical Journal, 649(553-560), 2006. |
[1962] | Ronald. Test. bladievla, 2012. |
[1963] | V. Ronchi. Resolving power of calculates and detected images. Journal of the Optical Society of America, 51:458-460, 1961. |
[1964] | V. Ronchi. Forty years of history of a grating interferometer. Applied Optics, 3(4):437-452, 1964. |
[1965] | C. Ronse. Erosion of narrow image features by combination of local low rank and max filters. In Proceedings of the Second IEE International Conference on Image Processing and its Applications, pages 77-81, London, 1986. |
[1966] | F. Rooms, W. Philips, and D.S. Lidke. Simultaneous degradation estimation and restoration of confocal images and performance evaluation by colocalization analysis. Journal of Microscopy, 218(1):22-36, 2005. |
[1967] | H. Rose. Zur theorie der bildentstehung im elektronenmikroskop. Optik, 42:217-244, 1975. |
[1968] | H. Rose. Nonstandard imaging methods in electron microscopy. Ultramicroscopy, 2:251-267, 1977. |
[1969] | H. Rose. Information transfer in transmission electron microscopy. Ultramicroscopy, 15:173-192, 1984. |
[1970] | H. Rose. Theory of electron-optical achromats and apochromats. Ultramicroscopy, 93:293-303, 2002. |
[1971] | H. Rose. Outline of an ultracorrector compensating for all primary chromatic and geometrical aberrations of charged-particle lenses. Nuclear Instruments and Methods in Physics Research A, 519:12-27, 2004. |
[1972] | H. Rose. Prospects for aberration-free electron microscopy. Ultramicroscopy, 103:1-6, 2005. |
[1973] | A. Rosenfeld. Picture Processing by Computer, chapter 8. Picture Segmentation, pages 151-153. Academic Press, 1969. Section 8.4.e. Coordinate Conversion. |
[1974] | A. Rosenfeld. Picture Processing by Computer. Academic Press, 1969. |
[1975] | A. Rosenfeld and J.L. Pfaltz. Distance functions on digital pictures. Pattern Recognition, 1(1):33-61, july 1968. |
[1976] | P.B. Rosenthal and R. Henderson. Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. Journal of Molecular Biology, 333(4):721-745, 2003. |
[1977] | M.J. Rossow, J.M. Sasaki, M.A. Digmann, and E. Gratton. Raster image correlation spectroscopy in live cells. Nature Protocols, 5(11):1761-1773, 2010. |
[1978] | D. Rotem and Y.Y. Zeevi. Image reconstruction from zero crossings. IEEE Transactions on Acoustics, Speech, and Signal Processing, 34(5):1269-1277, October 1986. |
[1979] | S. Roth, C.J.R. Sheppard, K. Wicker, and R. Heintzmann. Optical photon reassignment microscopy (OPRA). Optical nanoscopy, 2:5, 2013. doi:10.1186/2192-2853-2-5. |
[1980] | Prince E. Rouse. A Theory of the Linear Viscoelastic Properties of Dilute Solutions of Coiling Polymers. The Journal of Chemical Physics, 21(7):1272-1280, 1953. |
[1981] | M.P. Rout, J.D. Aitchison, M.O. Magnasco, and B.T. Chait. Virtual gating and nuclear transport: the hole picture. Trends in Cell Biology, 13:622-628, 2007. |
[1982] | M.P. Rout, J.D. Aitchison, A. Suprapto, K. Hjertaas, Y.M. Zhao, and B.T. Chait. The yeast nuclear pore complex: Composition, architecture, and transport mechanism. Journal of Cell Biology, 148:635-651, 2000. |
[1983] | W.E. Jr. Royer, K. Strand, M. van Heel, and W.A. Hendrickson. Structural hierarchy in erythrocruorin, the giant respiratory assemblage of annelids. Biochemistry, 97:7107-7111, 2000. |
[1984] | J.L. Rubenstein. Structural analysis of membrane protein complexes by single particle electron microscopy. Methods, 41:409-416, 2007. |
[1985] | Michael Rubinstein and Ralph H. Colby. Polymer Physics. Oxford University Press Inc., New York, 2006. |
[1986] | T. Ruckstuhl and D. Verdes. Supercritical angle fluorescence (SAF) microscopy. Optics Express, 12(18):4246-4254, 2004. |
[1987] | W. Rudin. Functional Analysis. McGraw-Hill, second edition, 1991, 1973. |
[1988] | M.E. Rudnaya, W. van den Broek, R.M.P. Doornbos, R.M.M. Mattheij, and J.M.L. Maubach. Defocus and twofold astigmatism correction in HAADF-STEM. Ultramicroscopy, 111:1043-1054, 2011. |
[1989] | M.E. Rudnaya, R.M.M. Mattheij, and J.M.L. Maubach. Evaluating sharpness functions for automated scanning electron microscopy. Journal of Microscopy, 2010. |
[1990] | A.G.T. Ruiter, J.A. Veerman, M.F. Garcia-Parajo, and N.F. van Hulst. Single molecule rotational and translational diffusion observed by near-field scanning optical microscopy. Journal of Physical Chemistry, 101:7318-7323, 1997. |
[1991] | T. Ruiz, G. Koppenschläger, and M. Radermacher. The first three-dimensional structure of phosphofructokinase from saccharomyces cerevisiae determined by electron microscopy of single particles. Journal of Structural Biology, 136:167-180, 2001. |
[1992] | T. Ruiz, G. Koppenschläger, and M. Radermacher. The 10.8- structure of saccharomyces cerevisiae phosphofructokinase determined by cryoelectron microscopy: localization of putative fructose 6-phosphate binding sites. Journal of Structural Biology, 143:124-134, 2003. |
[1993] | P.H. Rull. BARRY: An autonomous train-spotter, 1993. |
[1994] | H. Rullgr, L.-G. Öfverstedt, S. Masich, B. Daneholt, and O. Öktem. Simulation of transmission electron microscope images of biological specimens. Journal of Microscopy, 243(3):234-256, 2011. |
[1995] | C. Runge and H. Konitz. Vorlesungen über Numerisches Rechnen. Springer Verlag, 1924. |
[1996] | L.W. Runnels and S.F. Scarlata. Theory and application of fluorescence homotransfer to melittin oligomerization. Biophysical Journal, 69(4):1569-1583, 1995. |
[1997] | J. Ruprecht and J. Nield. Determining the structure of biological macromolecules by transmission electron microscopy, single particle analysis and 3d reconstruction. Biophysics and Molecular Biology, 75:121-164, 2001. |
[1998] | J.A. Rushing, H.S. Ranganath, T.H. Hinke, and S.J. Graves. Using association rules as texture features. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23(8):845 -858, 2001. |
[1999] | R.S. Ruskin, Z. Yu, and N. Grigorieff. Quantitative characterization of electron detectors for transmission electron microscopy. Journal of Structural Biology, 2013. http://dx.doi.org/10.1016/j.jsb.2013.10.016. |
[2000] | M.J. Rust, M. Bates, and X.W. Zhuang. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nature Methods, 3(10):793-795, 2006. |
[2001] | H. Rutishauer. Lectures on numerical mathematics. Birkhäuser, 1990. |
[2002] | D. Rutovitz. Datastructures for operations on digital images. In G.C. Cheng, R.S. Ledley, D.K. Pollock, and A. Rosenfeld, editors, Pictorial Pattern Recognition, pages 105-133, Washington, DC, 1968. Thompson. |
[2003] | John Elie Sader. Accurate Analytic Formulae for the Far Field Effective Potential and Surface Charge Density of a Uniformly Charged Sphere. Journal of Colloid and Interface Science, 188(2):508-510, 1997. |
[2004] | K. Sader, A. Brown, R. Brydon, and A. Bleloch. Quantitative analysis of image contrast in phase contrast STEM for low dose imaging. Ultramicroscopy, 110:1324-1331, 2010. |
[2005] | Reza Sadr, Christel Hohenegger, Haifeng Li, Peter J. Mucha, and Minami Yoda. Diffusion-induced bias in near-wall velocimetry. Journal of Fluid Mechanics, 577:443-456, 2007. |
[2006] | E.B. Saff and A.B.J. Kuijlaars. Distributing many points on a sphere. the Mathematical Intelligencer, 19(1):5-11, 1997. |
[2007] | P.G. Saffman and M. Delbrück. Brownian motion in biolocial membranes. Proc. Nat. Acad. Sci. USA, 72(8):3111-3113, 1975. |
[2008] | D. Sage, F.R. Neumann, F. Hediger, S.M. Gasser, and M. Unser. Automatic tracking of individual fluorescence particles: Application to the study of chromosome dynamics. IEEE Transactions on Image Processing, 14(9):1372-1383, 2005. |
[2009] | A. Saghi and P.A. Midgley. Electron tomography in the (S)TEM: From nanoscale morphological analysis to 3D atomic imaging. Annu. Rev. Mater. Res., 42:59-79, 2012. |
[2010] | P. Saint-Marc, J.S. Chen, and G. Medioni. Adaptive smoothing: A general tool for early vision. IEEE Transactions on Pattern Analysis and Machine Intelligence, 13(6):514, 1991. |
[2011] | Nobuhiko Saito, Kunihiko Takahashi, and Yasuo Yunoki. The Statistical Mechanical Theory of Stiff Chains. Journal of the Physical Society of Japan, 22(1):219-226, 1967. |
[2012] | T. Saito and J. Toriwaki. New algorithms for euclidean distance transformation of an n-dimensional digitized picture with applications. Pattern Recognition, 27(11):1551-1565, 1994. |
[2013] | A.H. Salden, B.M. ter Haar Romeny, and M.A. Viergever. Differential integral geometry of linear scale-space. Journal of Mathematical Imaging and Vision, 9:5-27, 1998. |
[2014] | O.A. Saleh, D.B. McIntosh, P. Pincus, and N. Ribeck. Nonlinear Low-Force Elasticity of Single-Stranded DNA Molecules. Physical Review Letters, 102(6):068301, 2009. |
[2015] | Joseph Samuel and Supurna Sinha. Elasticity of semiflexible polymers. Physical Review E, 66:050801, 2002. |
[2016] | K. Sandberg, D.N. Mastronarde, and G. Beylkin. A fast reconstruction algorithm for electron microscope tomography. Journal of Structural Biology, 144:61-72, 2003. |
[2017] | B. Sander, M.M. Golas, and H. Stark. Automatic ctf correction for single particles based upon multivariate statistical analysis of individual power spectra. Journal of Structural Biology, 142:392-401, 2003. |
[2018] | B. Sander, M.M. Golas, and H. Stark. Advantages of ccd detectors for de novo three-dimensional structure determination in single-particle electron microscopy. Journal of Structural Biology, 151:92-105, 2005. |
[2019] | A. Santos and I.T. Young. Model-based resolution - applying the theory in quantitative microscopy. Applied Optics, 39(17):2948-2958, 2000. |
[2020] | J.L.C. Sanz and T.T. Huang. Image representation by sign information. IEEE Transactions on Pattern Analysis and Machine Intelligence, 11(7):729-738, July 1989. |
[2021] | G. Sapiro, R. Kimmel, D. Shaked, B. Kimia, and A.M. Bruckstein. Implementing continuous-scale morphology via curve evolution. Pattern Recognition, 26(9):1363-1372, 1993. |
[2022] | W. G. J. H. M. van Sark, P. L. T. M. Frederix, A. A. Bol, H. C. Gerritsen, and A. Meijerink. Blueing, bleaching, and blinking of single cdse/zns quantum dots. Chemphyschem, 3(10):871-879, 2002. |
[2023] | Abhijit Sarkar. Theoretical micromechanics of DNA and DNA-protein complexes. PhD thesis, University of Illinois at Chicago, 2002. |
[2024] | L. J. Sartor and A. R. Weeks. Morphological operations on color images. Journal of Electronic Imaging, 10(2):548-559, 2001. |
[2025] | T. Sasaki, H. Sawada, F. Hosokawa, Y. Kohno, T. Tomita, T. Kaneyama, Y. Kondo, K. Kimoto, Y. Sato, and K. Suenaga. Performance of low-voltage stem/tem with delta corrector and cold field emission gun. Journal of Electron Microscopy, 2010. |
[2026] | Y. Sato, C.-F. Westin, A. Bhalerao, S. Nakajima, N. Shiraga, S. Tamura, and R. Kikinus. Tissue classification based on 3D local intensity structures for volume rendering. IEEE Transactions on Visualization and Computer Graphics, 6(2):160-179, April-June 2000. |
[2027] | Paul H.M. Savelkoul, Arnold Catsburg, Sije Mulder, Ludo Oostendorp, Jurjen Schirm, Hans Wilke, Adri G.M. van der Zanden, and Gerda T. Noordhoek. Detection of Mycobacterium tuberculosis complex with Real Time PCR: Comparison of different primer-probe sets based on the IS6110 element. Journal of Microbiological Methods, 66(1):177-180, 2006. |
[2028] | H. Sawada, T. Sannomiya, F. Hosokawa, T. Kaneyama, Y. Kondo, Y. Tanishiro, and K. Takayanagi. Method to measure aberrations from ronchigram by auto-correlation function. volume IMC 16, Sapporo, Japan. |
[2029] | H. Sawada, T. Sannomiya, F. Hosokawa, T. Nakamichi, T. Kaneyama, T. Tomita, Y. Kondo, T. Tanaka, Y. Oshima, Y. Tanishiro, and K. Takayanagi. Measurement method of aberration from ronchigram by autocorrelation function. Ultramicroscopy, 108:1467-1475, 2008. |
[2030] | H. Sawada, T. Sasaki, F. Hosokawa, S. Yuasa, M. Terao, M. Kawazoe, T. Nakamichi, T. Kaneyama, Kondo. Y., K. Kimoto, and K. Suenaga. Higher-order aberration corrector for an image-forming system in a transmission electron microscope. Ultramicroscopy, pages 1-4, 2010. |
[2031] | H. Sawada, T. Sasaki, F. Hosokawa, S. Yuasa, M. Terao, T. Kawazoe, M .and Nakamichi, T. Kaneyama, Y. Kondo, K. Kimoto, and K. Suenada. Correction of higher order geometrical aberration by triple 3-fold astigmatism field. Journal of electron microscopy, pages 1-7, 2009. |
[2032] | H. Sawada, Y. Tanishiro, N. Ohashi, T. Tomita, F. Hosokawa, T. Kaneyama, Y. Kondo, and K. Takayanagi. Stem imaging of 47-pm-separated atomic columns by a spherical aberration-corrected electron microscope with a 300-kv cold field emission gun. Journal of electron microscopy, 58:357-361, 2009. |
[2033] | H. Sawada, T. Tomita, M. Naruse, T. Honda, P. Hambridge, P. Hartel, M. Haider, C. Hetherington, R. Doole, A. Kirkland, J. Hutchison, J. Titchmarsh, and D. Cockayne. Experimental evaluation of a spherical aberration-corrected TEM and STEM. Journal of Electron Microscopy, 54(2):119-121, 2005. |
[2034] | I. Saxl. Contact distances and random free paths. Journal of Microscopy, 170, Pt 1:53-64, April 1993. |
[2035] | M.J. Saxton. Single-particle tracking: the distribution of diffusion coefficients. Biophysical Journal, 72:1744-1753, 1997. |
[2036] | M.J. Saxton. A Biological Interpretation of Transient Anomalous Subdiffusion. I. Qualitative Model. Biophysical Journal, 92(4):1178-1191, 2007. |
[2037] | W.O. Saxton. Computer Techniques for Image Processing of Electron Microscopy. Academic Press, New York, 1978. |
[2038] | W.O. Saxton. Quantitative comparision of images and transforms. Journal of Microscopy, 1-2:52-60, 1998. |
[2039] | W.O. Saxton. A new way of measuring microscope aberrations. Ultramicroscopy, 81:41-45, 2000. |
[2040] | W.O. Saxton and W. Baumeister. The correlation averaging of a regularly arranged bacterial cell envelope protein. Journal of Microscopy, 127(2):127-138, 1982. |
[2041] | B.A. Scalettar, J.R. Swedlow, J.W. Sedat, and D.A. Agard. Dispersion, aberration and deconvolution in multi-wavelength fluorescence images. Journal of Microscopy, 182:50-60, 1996. |
[2042] | R.Q.J. Schaapveld, L. Borradori, D. Geerts, M.R. van Leusden, I. Kuikman, M.G. Nievers, C.M. Niessen, R.D.M. Steenbergen, P.J.F. Snijders, and A. Sonnenberg. Hemidesmosome formation is initiated by the β4 integrin subunit, requires complex formation of β4 and h.d1/plectin, and involves a direct interaction between β4 and the bullous pemphigoid antigen. Journal of Cell Biology, 142(1):271-284, July 1998. |
[2043] | D.W. Schaefer, J.F. Joanny, and P. Pincus. Dynamics of Semiflexible Polymers in Solution. Macromolecules, 13(5):1280-1289, 1980. |
[2044] | Dorothy A. Schafer, Jeff Gelles, Michael P. Sheetz, and Robert Landick. Transcription by single molecules of RNA polymerase observed by light microscopy. Nature, 352(6334):444-448, 1991. |
[2045] | B. Schaffer, U. Hohenester, A. Truegler, and F. Hofer. High-resolution surface plasmon imaging of gold nanoparticles by energy-filtered transmission electron microscopy. Physical Review B, 79:041401, 2009. |
[2046] | J. Scharcanski and C.T.J. Dodson. Local spatial anisotropy and its variability. Journal of Pulp and Paper Science, 25(11):393-397, November 1999. |
[2047] | J. Scharcanski and C.T.J. Dodson. Stochastic texture image estimators for local spatial anisotropy and its variability. IEEE Transactions on Instrumentation and Measurement, 49(5):971-979, October 2000. |
[2048] | H. Scharr. Optimale Operatoren in der Digitalen Bildverarbeitung. PhD thesis, Ruprechts-Karls-Universität University, Heidelberg, Germany, May 2000. |
[2049] | D. Scharstein and R. Szeliski. A taxonomy and evaluation of dense two-frame stereo correspondence algorithms. International Journal of Computer Vision, 47(1):7-42, April-June 2002. |
[2050] | M. Schatz, E.V. Orlova, G. Harauz, H. Stark, P. Dube, F. Zemlin, and M. van Heel. Angular reconstitution in three-dimensional electron microscopy: practical and technical aspects. Scanning Microscopy, 11:179-193, 1997. |
[2051] | J.C. Schatzman. Index mappings for the fast Fourier transform. IEEE Transactions on Signal Processing, 44(3):717-719, March 1996. |
[2052] | F. Scheck. Mechanics: From Newton's Law to Deterministic Chaos. Springer, Berlin, 1999. |
[2053] | J.A. Schellman. Flexibility of DNA. Biopolymers, 13(1):217-226, 1974. |
[2054] | J.A. Schellman. The flexibility of DNA : I. Thermal fluctuations. Biophysical Chemistry, 11(3):321-328, 1980. |
[2055] | J.A. Schellman. The flexibility of DNA : II. Spontaneous and ligand induced distortions. Biophysical Chemistry, 11(3):329-337, 1980. |
[2056] | J.A. Schellman and S.C. Harvey. Static contributions to the persistence length of DNA and dynamic contributions to DNA curvature. Biophysical Chemistry, 55(1):95-114, 1995. |
[2057] | V.M.E. Schenkeveld and I.T. Young. Simulations of measurements of fluorescene lifetimes using noise-modulated light. Journal of Fluorescence, 7(1):55-58, 1997. |
[2058] | S.H.W. Scheres and S. Chen. Prevention of overfitting in cryo-em structure determination. Nature Methods, 9(9):853-854, July 2012. |
[2059] | S.H.W. Scheres, M. Valle, and J.-M. Carazo. Fast maximum-likelihood refinement of electron microscopy images. Bioinfomatics, 21 S2:ii243-ii244, 2005. |
[2060] | S.H.W. Scheres, M. Valle, R. Nuñez, C.O.S. Sorzano, R. Marabini, G.T. Herman, and J.-M. Carazo. Maximum-likelihood multi-reference refinement for electron microscopy images. Journal of Molecular Biology, 348:139-149, 2005. |
[2061] | L. Schermelleh, R. Heintzmann, and H. Leonhardt. A guide to super-resolution fluorescence microscopy. The journal of cell biology, 190(2):165-175, 2010. |
[2062] | S. Schimpfert, E.A. Klein, A. Briegel, V. Hughes, J. Kahnt, K. Bolte, U.G. Maier, Y.V. Brun, G.J. Jensen, Z. Gitai, and M. Thanbichler. General protein diffusion barries create compartments within barcterial cells. Cell, 151:1270-1282, 2012. |
[2063] | P. Schiske. Die untere grenze des farbfehlers magnetischer linsen bei vorgeschriebener maximalfeldstaerke. Optik, 13:502-503, 1956. |
[2064] | V. Schlager1, S.E. Schausberger, D. Stifter, and B. Heise1. Coherence probe microscopy imaging and analysis for fiber-reinforced polymers. In A. Heyden and F. Kahl, editors, Image Analysis, Lecture Notes in Computer Science 6688, pages 424-434, Heidelberg, 2011. Springer. |
[2065] | J. Schlessinger. Ligand-induced, receptor-mediated dimerization and activation of egf receptor. Cell, 110(6):669-72, 2002. |
[2066] | M. Schmeisser, B.C. Heisen, M. Luettich, B. Busche, F. Hauer, T. Koske, K.-H. Knauber, and H. Stark. Parallel, distributed and GPU computing technologies in single-particle electron microscopy. Acta Crystallographica Section D, 65(6):659-671, 2009. |
[2067] | R. Schmidt, C.A. Wurm, S. Jakobs, J. Engelhardt, A. Egner, and S.W. Hell. Spherical nanosized focal spots unravels the interior of cells. Nature Methods, 5(6):539-544, 2008. |
[2068] | I. Schoen, J. Ries, E. Klotzsch, H. Ewers, and V. Vogel. Binding-activated localization microscopy of DNA structures. Nano Letters, 2011. |
[2069] | I. Schoenberg. Über variationsvermindernde lineare transformationen. Mathematische Zeitschrift, 32:321-328, 1930. |
[2070] | W. Schöne. Differentialgeometrie. Teubner, Leipzig, 1990. |
[2071] | G. Schönhense and H. Spiecker. Correction of chromatic and spherical aberration in electron microscopy utilizing the time structure of pulsed excitation sources. Journal of Vacuum Science Technology B, 20(6):2526-2534, 2002. |
[2072] | A. Schönle and S.W. Hell. Calculation of vectorial three-dimensional transfer functions in large angle focusing systems. Journal of the Optical Society of America A, 19(10):2121-2126, 2002. |
[2073] |
Gerhard J. Sch ütz, Ph. Pastushenko, Vassili, Hermann J. Gruber, Hans-G ünter Knaus, Bernt Pragl, and Hansgeorg Schindler. 3D Imaging of Individual Ion Channels in Live Cells at 40 nm Resolution. Single Molecules, 1(1):25-31, 2000. |
[2074] | G.J. Schütz, Axman M., and H. Schindler. Imaging single molecules in three dimensions. Single Molecules, 2(2):69-74, 2001. |
[2075] | M. Schwering, A. Kiel, A. Kurz, K. Lymperopoulos, A. Sprödefeld, R. Krämer, and D.-P. Herten. Far-field nanoscopy with reversible chemical reactions. Angewandte Chemie International Edition, 50:2940-2945, 2011. |
[2076] | M. Schwertner, M.J. Booth, M.A.A. Neil, and T. Wilson. Measurement of specimen induced aberrations of biological samples using phase stepping interferometry. Journal of Microscopy, 213(1):11-19, 2004. |
[2077] | M. Schwertner, M.J. Booth, and T. Wilson. Characterizing specimen induced aberrations for high na adaptive optical microscopy. Optics Express, 12(26):6540-6552, 2004. |
[2078] | M. Schwertner, M.J. Booth, and T. Wilson. Simulation of specimen-induced aberrations for objects with spherical and cylindrical symmetry. Journal of Microscopy, 215(3):271-280, 2004. |
[2079] | David W. Scott. On optimal and data-based histograms. Biometrika, 66(3):605-610, 1979. |
[2080] | T.W. Sederberg, D.C. Anderson, and R.N. Goldman. Implicit representation of parametric curves and surfaces. Computer Vision, Graphics, and Image Processing, 28(1):72-84, 1984. |
[2081] | D.E. Segall, P.C. Nelson, and R. Phillips. Volume-exclusion effects in tethered-particle experiments: Bead size matters. Physical Review Letters, 96:088306, 2006. |
[2082] | S. Semrau, L. Holtzer, M. Gonzales-Gaitan, and T. Schmidt. Quantification of biological interactions with particle image cross-correlation spectroscopy (piccs). Biophysical Journal, 100(7):1810-1818, 2011. |
[2083] | J. Sengupta, R.K. Agrawal, and J. Frank. Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA. Proceedings of the National Academy of Sciences of the United States of America, 98:11991-11996, 2001. |
[2084] | P. Sengupta, T. Jovanovic-Talisman, D. Skoko, M. Renz, S.L. Veatch, and J. Lippincott-Schwartz. Probing protein heterogeneity in the plasma membrane using PALM and pair correlation analysis. Nature Methods, 8(11):969-975, 2011. |
[2085] | Yeonee Seol, Jinyu Li, Philip C. Nelson, Thomas T. Perkins, and M.D. Betterton. Elasticity of Short DNA Molecules: Theory and Experiment for Contour Lengths of 0.6-7 um. Biophysical Journal, 93(12):4360-4373, 2007. |
[2086] | A. Serge, N. Bertaux, H. Rigneault, and D. Marguet. Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes. Nature Methods, 5(8):687-694, 2008. |
[2087] | L. Serino, G. Sanniti di Baja, and C. Arcelli. Using the skeleton for 3d object decomposition. In A. Heyden and F. Kahl, editors, Image Analysis, Lecture Notes in Computer Science 6688, pages 447-456, Heidelberg, 2011. Springer. |
[2088] | J. Serra. Image Analysis and Mathematical Morphology. Academic Press, London, 1982. |
[2089] | J. Serra, editor. Image Analysis and Mathematical Morphology, Volume 2: Theoretical Advances. Academic Press, London, 1988. |
[2090] | I.K. Sethi and R. Jain. Finding trajectories of feature points in monocular image sequences. IEEE Transactions on Pattern Analysis and Machine Intelligence, 9:56-73, 1987. |
[2091] | J. A. Sethian. Level Set Methods and Fast Marching Methods: Evolving Interfaces in Computational Geometry, Fluid Mechanics, Computer Vision, and Materials Science. Cambridge University Press, Cambridge, 1996. |
[2092] | J.A. Sethian. Curvature and the evolution of fronts. Communications in Mathematical Physics, 101:487-499, 1985. |
[2093] | M. Sezgin and B. Sankur. Survey over image thresholding techniques and quantitative performance evaluation. Journal of Electronic Imaging, 13(1):146-165, 2004. |
[2094] | Joshua W. Shaevitz and Daniel A. Fletcher. Enhanced three-dimensional deconvolution microscopy using a measured depth-varying point-spread function. Journal of the Optical Society of America A, 24(9):2622-2627, 2007. |
[2095] | Leila Shafarenko, Maria Petrou, and Josef Kittler. Automatic watershed segmentation of randomly textured color images. IEEE Transactions on Image Processing, 6(11):1530-1544, November 1997. |
[2096] | N.C. Shaner, R.E. Campbell, P.A. Steinbach, B.N.G. Giepmans, A.E. Palmer, and R.Y. Tsien. Improved monomeric red, orange and yellow fluorescent proteins derived from discosoma sp. red fluorescent protein. Nature Biotechnology, 22(12):1567-1672, 2004. |
[2097] | N.C. Shaner, P.A. Steinbach, and R.Y. Tsien. A guide to choosing fluorescent proteins. Nature Methods, 2:905-909, 2005. |
[2098] | Z. Shang and F.J. Sigworth. Hydration-layer models for cryo-EM image simulation. Journal of Structural Biology, 180:10-16, 2012. |
[2099] | C.E. Shannon. A mathematical theory of communication. The Bell System Technical Journal, 27:379-423, 623-656, July, October 1948. |
[2100] | C.E. Shannon. Communication in the presence of noise. Proceedings of the IRE, 37(1):10-21, 1949. [reprinted in: Proceedings of the IEEE, vol. 86, no. 2, pp. 447-457, February 1998]. |
[2101] | Z. Shao. On the fifth order aberration in a sextupole corrected probe forming system. Rev. Sci. Instrum., 59(11):2428-2437, 1988. |
[2102] | Z. Shao. On the fifth order aberration in a sextupole corrected probe forming system. Review of Scientific Instruments, 59(11):2428-2437, 1998. |
[2103] | S.D. Shapiro. Transformations for the computer detection of curves in noisy pictures. Computer Graphics and Image Processing, 4:328-338, 1975. |
[2104] | S.D. Shapiro. Feature space transforms for curve detection. Pattern Recognition, 10:129-143, 1978. |
[2105] | S.D. Shapiro. Properties of transforms for the detection of curves in noisy pictures. Computer Graphics and Image Processing, 8:219-236, 1978. |
[2106] |
C. J. R. Sheppard and P. T ör ök. Effects of specimen refractive index on confocal imaging. Journal of Microscopy, 185(3):366-374, 1997. |
[2107] | C.J.R. Sheppard. The spatial frequency cut-off in three-dimensional imaging. Optik, 72(4):131-133, 1986. |
[2108] | C.J.R. Sheppard. The spatial frequency cut-off in three-dimensional imaging ii. Optik, 74(3):128-129, 1986. |
[2109] | C.J.R. Sheppard. Super-resolution in confocal microscopy. Optik, 80(2):53-54, 1988. |
[2110] | Colin J.R. Sheppard. Annular pupils, radial polarization, and superresolution. Applied Optics, 43(22):4322-4327, 2004. |
[2111] | I.A. Shevelev. Second-order features extraction in the cat visual cortex: selective and invariant sensitivity of neurons to the shape and orientation of crosses and corners. BioSystems, 48:195-204, 1998. |
[2112] | J.R. Shewchuk. Adaptive precision floating-point arithmetic and fast robust geometric predicates. Technical report, School of Computer Science, Carnegie Mellon University, USA, 1996. |
[2113] | X. Shi, Z. Xie, Y. Song, Y. Tan, E.S. Yeung, and H. Gia. Superlocalization spectral imaging microscopy of a multicolor quantum dot complex. Analytical Chemistry, 84:1504-1509, 2012. |
[2114] | Y. Shi, S. He, and J.E. Hearst. Statistical mechanics of the extensible and shearable elastic rod and of DNA. The Journal of Chemical Physics, 105(2):714-731, 1996. |
[2115] | N. Shibata, S.J. Pennycook, T.R. Gosnell, G.S. Painter, W.A. Shelton, and P.F. Becher. Observation of rare-earth segregation in silicon nitride ceramics at subnanometre dimensions. Nature, 428:730-734, 2004. |
[2116] | H. Shigematsu and F.J. Sigworth. Noise models and cryo-em drift correction with a direct-electron detector. Ultramicroscopy, 131:61-69, 2013. |
[2117] | S.H. Shim, C. Xia, G. Zhong, G. Babcock, J.C. Vaughan, B. Huang, X. Wang, C. Xu, G.-Q. Bi, and X. Zhuang. Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes. Proceedings of the National Academy of Sciences USA, 109(35):13978-13983, 2012. |
[2118] | J. Shiue and et al. Phase tem for biological imaging utilizing a boersch electrostatic phase plate: theory and practice. Journal of Electron Microscopy, 58:135-145, 2009. |
[2119] | G.V. Shivashankar, G. Stolovitzky, and A. Libchaber. Backscattering from a tethered bead as a probe of DNA flexibility. Applied Physics Letters, 73(3):291-293, 1998. |
[2120] | E. Shore and A. Small. Optimal acquisition scheme for subwavelength localization microscopy of bleachable fluorophores. Optics Letters, 36(2):289-291, 2011. |
[2121] | H. Shroff, C. G. Galbraith, J. A. Galbraith, and E. Betzig. Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics. Nature Methods, 5(5):417-423, 2008. |
[2122] | G. Shtengel, J.A. Galbraith, C.G. Galbraith, J. Lippincott-Schwartz, J.M. Gillette, S. Manely, R. Sougrat, C.M. Waterman, P. Knachanawong, M.W. Davidson, R.D. Fetter, and H.F. Hess. Interferometric fluorescent super-resolution microscopy resolves 3d cellular ultrastructure. Proceeding of the National Academy of Science USA, 106(9):3125-3130, 2009. |
[2123] | S. Siegel and N.J. Jr. Castellan. Nonparametric statistics for the behavioral sciences. Mc Graw-Hill, New York, 1988. |
[2124] | D.O. Siegmund and K.J. Worsley. Testing for a signal with unknown location and scale in a stationary gaussian random field. Annals of Statistics, 23:608-639, 1995. |
[2125] | F.J. Sigworth. A maximum-likelihood approach to single-particle image refinement. Journal of Structural Biology, 122:328-339, 1998. |
[2126] | J. Silcox, P. Xu, and R.F. Loane. Resolution limits in annular dark field STEM. Ultramicroscopy, 47:173-186, 1992. |
[2127] | J.G. Simmonds. A Brief on Tensor Analysis, chapter 1,2. Spring-Verlag, 1982. |
[2128] | J.G. Simmonds. A Brief on Tensor Analysis. Springer-Verlag, 1982. |
[2129] | R.D. Simmonds, P.S. Salter, A. Jesacher, and M.J. Booth. Three dimensional laser microfabrication in diamond using a dual adaptive optics system. Optics Express, 19(24):24122-24128, 2011. |
[2130] | E.P. Simoncelli and E.H. Adelson. Non-separable extensions of quadrature mirror filters to multiple dimensions. Proceedings of the IEEE, 78(4):652-664, April 1990. |
[2131] | E.P. Simoncelli and E.H. Adelson. Noise removal via bayesian wavelet coring. In 3rd IEEE International Conference on Image Processing (Lausanne, Switzerland), pages 379-382, 1996. |
[2132] | E.P. Simoncelli and H. Farid. Steerable wedge filters for local orientation analysis. IEEE Transactions on Image Processing, 5(9):1377-1382, 1996. |
[2133] | E.P. Simoncelli, W.T. Freeman, E.H. Adelson, and D.J. Heeger. Shiftable multi-scale transforms. IEEE Transactions on Information Theory, 38(2):587-607, March 1992. |
[2134] | M. B. Sinclair, D. M. Haaland, J. A. Timlin, and H. D. Jones. Hyperspectral confocal microscope. Appl Opt, 45(24):6283-91, 2006. |
[2135] | M. B. Sinclair, J. A. Timlin, D. M. Haaland, and M. Werner-Washburne. Design, construction, characterization, and application of a hyperspectral microarray scanner. Applied Optics, 43(10):2079-2088, 2004. |
[2136] | A. Singh. Optic Flow Computation: A Unified Perspective. IEEE Computer Society Press, 1992. |
[2137] | Mukta Singh-Zocchi, Sanhita Dixit, Vassili Ivanov, and Giovanni Zocchi. Single-molecule detection of DNA hybridization. Proceedings of the National Academy of Sciences of the USA, 100(13):7605-7610, 2003. |
[2138] | R.C. Singleton. An algorithm for computing the mixed radix fast Fourier transform. IEEE Transactions on Audio and Electroacoustics, 17(2):93-103, June 1969. |
[2139] | J. Sklansky. On the Hough technique for curve detection. IEEE Transactions on Computers, 27(10):923-926, October 1978. |
[2140] | E.M. Slayter and H.S. Slayter. Ligth and Electron Microscopy. Cambridge University Press, Cambridge, United Kingdom, 1992. |
[2141] | I. Smal, M. Loog, W.J. Niessen, and E. Meijering. Quantitative comparison of spot detection methods in fluorescence microscopy. IEEE Transactions on Medical Imaging, 29:282-301, 2010. |
[2142] | A.R. Small. Theoretical limits on errors and acquisition rates in localizing switchable fluorophores. Biophysical Journal - Biophysical Letters, 92(2):L16-L18, 2009. |
[2143] | Th.H. Smit, E. Schneider, and A. Odgaard. Star length distribution: a volume-based concept for the characterization of structural anisotropy. Journal of Microscopy, 191(3):249-257, September 1998. |
[2144] | Brady J.M. Smith, S.M. Susan - a new approach to low level image processing. International Journal of Computer Vision, 23(1):45-78, 1997. |
[2145] | C.S. Smith, N. Joseph, B. Rieger, and K.A. Lidke. Fast, single-molecule localization that achieves theoretically minimum uncertainty. Nature Methods, 7(5):373-375, 2010. |
[2146] | Douglas E. Smith, Thomas T. Perkins, and Steven Chu. Dynamical scaling of DNA diffusion coefficients. Macromolecules, 29(4):1372-1373, 1996. |
[2147] | M.B. Smith, H. Li, T. Shen, X. Huang, E. Yusuf, and D. Vavylonis. Segmentation and tracking of cytoskeletal filaments using open active contours. Cytoskeleton, 67:693-705, 2010. |
[2148] | M.J. Smith and T.P. Barnwell. A procedure for designing exact reconstruction filter banks for tree structured sub-band coders. In Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, pages 27.1.1-27.1.4, San Diego, U.S.A., March 1984. |
[2149] | S.C. Smith. Improving single molecule fluorescence superresolution techniques. Master's thesis, Delft University of Technology, 2009. |
[2150] | Steven B. Smith, Yujia Cui, and Carlos Bustamante. Overstretching B-DNA: The Elastic Response of Individual Double-Stranded and Single-Stranded DNA Molecules. Science, 271(5250):795-799, 1996. |
[2151] | Steven B. Smith, Laura Finzi, and Carlos Bustamante. Direct Mechanical Measurement of the Elasticity of Single DNA Molecules by Using Magnetic Beads. Science, 258(5085):1122-1126, 1992. |
[2152] | W.J. Smith. Modern Optical Engenering. McGraw-Hill, New York, thrid edition, 2000. |
[2153] | M.I. Snijder-van As, B. Rieger, B. Joosten, C. Figdor, V. Subramaniam, and J.S. Kanger. A hybrid total internal reflection fluorescence and optical tweezers microscope to study cell adhesion and membrane protein dynamics of single living cells. Journal of Microscopy, 223(1):84-92, 2009. |
[2154] | Donald L. Snyder, Timothy H. Schulz, and Joseph A. O'Sullivan. Deblurring Subject to Nonnegativity Constraints. IEEE Transactions on Signal Processing, 40(5):1143-1150, 1992. |
[2155] | P. Soille. Morphological Image Analysis. Principles and Applications. Springer-Verlag, 1999. |
[2156] | P. Soille. Morphological operators with discrete line segments. In G. Borgefors, I. Nyström, and G. Sanniti di Baja, editors, DGCI 2000, 9th Discrete Geometry for Computer Imagery, volume 1953 of Lecture Notes on Computer Science, pages 78-98. Springer, 2000. |
[2157] | P. Soille. Short survey on morphological operators based on rank filters. Pattern Recognition, 35:527-535, 2002. |
[2158] | P. Soille, E. J. Breen, and R. Jones. Recursive implementation of erosions and dilations along discrete lines at arbitrary angles. IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(5):562-567, 1996. |
[2159] | P. Soille and H. Talbot. Image structure orientation using mathematical morphology. In A. K. Jain, S. Venkatesh, and B. C. Lovell, editors, Proceedings of the 14th IAPR International Conference on Pattern Recognition, volume 1, pages 1467-1469, Los Alamitos, 1998. IEEE Computer Society Press. |
[2160] | Pierre Soille and Hugues Talbot. Directional morphological filtering. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23(11):1313-1329, November 2001. |
[2161] | A.F. Solé, A. López, and G. Sapiro. Crease enhancement diffusion. Computer Vision and Image Understanding, 84:241-248, 2001. |
[2162] | H.V. Sorensen and C.S. Burrus. Efficient computation of the short-time FFT. In Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, (New York, U.S.A.), pages 1894-1897, April 1988. |
[2163] | H.V. Sorensen, D.L. Jones, M.T. Heideman, and C.S. Burrus. Real-valued fast Fourier transform algorithms. IEEE Transactions on Acoustics, Speech, and Signal Processing, 35(6):849-863, June 1987. |
[2164] | C.O.S. Sorzano, J.J. Fernández, R. Marabini, G.T. Herman, Y. Censor, and J.M. Carazo. Transfer function restoration in 3D electron microscopy via iterative data refinement. pages 1-4. |
[2165] | C.O.S. Sorzano, R. Marabini, N. Boisset, E. Rietzel, R. Schröder, G.T. Herman, and J.M. Carazo. The effect of overabundant projection directions on 3D reconstruction algorithms. Journal of Structural Biology, 133:108-118, 2001. |
[2166] | C.O.S. Sorzano, R. Marabini, J. Velázquez-Muriel, J.R. Bilbao-Castro, S.H.W. Scherees, J.M. Carazo, and A. Pascual-Montano. XMIPP: a new generation of an open-source image processing package for electron microscopy. Journal of Structural Biology, 148:194-204, 2004. |
[2167] | Pierre-Edouard Sottas, Eric Larquet, Andrzej Stasiak, and Jacques Dubochet. Brownian Dynamics Simulation of DNA Condensation. Biophysical Journal, 77:1858-1870, 1999. |
[2168] | A.A. Sousa, M.F. Hohmann-Marriott, G. Zhang, and R.D. Leapman. Monte carlo electron-trajectory simulations in bright-field and dark-field stem:implications for tomography of thick biological sections. Ultramicroscopy, 109:213-221, 2009. |
[2169] | A. J. Spakowitz. Wormlike chain statistics with twist and fixed ends. Europhysics Letters (EPL), 73(5):684-690, 2006. |
[2170] | Andrew J. Spakowitz and Zhen-Gang Wang. Exact Results for a Semiflexible Polymer Chain in an Aligning Field. Macromolecules, 37:5814-5823, 2004. |
[2171] | Andrew J. Spakowitz and Zhen-Gang Wang. End-to-end distance vector distribution with fixed end orientations for the wormlike chain model. Physical Review E, 72, 2005. |
[2172] | C.M. Sparrow. On spectroscopic resolving power. Astrophysical Journal, 44:76-86, 1916. |
[2173] | Michael Speidel, Alexandr Jonas, and Ernst-Ludwig Florin. Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging. Optics Letters, 28(2):69-71, 2003. |
[2174] | H. Spies. Analysing Dynamic Processes in Range Data Sequences. PhD thesis, Ruprechts-Karls-Universität University, Heidelberg, Germany, July 2001. |
[2175] | H. Spies and P.E. Forssen. Two-dimensional channel representation for multiple velocities. In J. Bigün and T. Gustavsson, editors, SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis (Göteborg, Sweden), LNCS 2749, pages 356-362, Berlin, June 29 -July 2 2003. Springer-Verlag. |
[2176] | M. Spivak. Calculus on Manifolds. Perseus Books, Cambridge, MA, 1965. |
[2177] | M. Spivak. A Comprehensive Introduction to Differential Geometry, volume 2. Publish or Perish, Berkley, 1979. |
[2178] | R.J. Spontak, M.C. Williams, and D.A. Agard. Three-dimensional study of cylindrical morphology in a styrene-butadiene-styrene block copolymer. Polymer, 29:387-395, 1988. |
[2179] | B.L. Sprague and J.G. McNally. FRAP analysis of binding: proper and fitting. Trends in Cell Biology, 15(2):84-91, 2005. |
[2180] | B.L. Sprague, R.L. Pego, D.A. Stavreva, and J.G. McNally. Analysis of binding reactions by fluorescence recovery after photobleaching. Biophysical Journal, 86:3473-3495, June 2004. |
[2181] | A. Squire and P.I.H. Bastiaens. Three dimensional image restoration in fluorescence lifetime imaging microscopy. Journal of Microscopy, 193:36-49, 1999. |
[2182] | A. Squire, P.J. Verveer, O. Rocks, and P.I.H. Bastiaens. Red-edge anisotropy microscopy enables dynamic imaging of homo-FRET between fluorescent proteins in cells. Journal of Structural Biology, 147(1):62-69, 2004. |
[2183] | D. Squire and T. Caelli. Invariant signatures: Characterizing contours by their departures from invariance. Computer Vision and Image Understanding, 77(3):284-316, 2000. |
[2184] | B. Srinivasa Reddy and B.N. Chatterji. A fft-based technique for translation, rotation and scale-invariant image registration. IEEE Transactions on Image Processing, 5(8):1266-1271, 1996. |
[2185] | P.A. Stadelmann. EMS - A software package for electron diffration analysis and HREM image simulation in material science. Ultramicroscopy, 21:131-146, 1987. |
[2186] | S. Stallinga. Light distribution close to focus in biaxially birefringent media. Journal of the Optical Society of America A, 21(9):1785-1788, 2004. |
[2187] | S. Stallinga. Compact description of substrate-related aberrations in high numerical aperture optical disk readout. Applied Optics, 44:949-958, 2005. |
[2188] | S. Stallinga. Finite conjugate spherical aberration compensation in high numerical-aperture optical disc read-out. Applied Optics, 44:7307-7312, 2005. |
[2189] | S. Stallinga. Optical trapping at low numerical aperture. Journal of the European Optical Society, 6:11027, 2011. |
[2190] | S. Stallinga and B. Rieger. Accuracy of the Gaussian point spread function model in 2D localization microscopy. Optics Express, 18(24):24461-24476, 2010. |
[2191] | S. Stallinga and B. Rieger. Position and orientation estimation of fixed dipole emitters using an effective hermite point spread function model. Optics Express, 20(6):5896-5921, 2012. |
[2192] | S. Stallinga and B. Rieger. The effect of background on localization uncertainty in single emitter imaging. In IEEE International Symposium on Biomedical Imaging, pages 988-991, Barcelona, Spain, May 2-5 2012. IEEE. |
[2193] | J.P.P. Starink and T.M. Jovin. Background correction in scanning probe microscope recordings of macromolecules. Surface Science, 359:291-305, 1996. |
[2194] | H. Stark, P. Dube, R. Lührmann, and B. Kastner. Arrangement of rna and proteins in the spliceosomal u1 small nuclear ribonucleoprotein particle. Nature, 409:539-541, 2001. |
[2195] | H. Stark, F. Zemlin, and C. Boettcher. Electron radiation damage to protein crystals of bacteriorhodopsin at different temperatures. Ultramicroscopy, 63:75-70, 1996. |
[2196] | D. Stauffer and A. Aharony. Introduction to Percolation Theory. Taylor & Francis, second edition, 1985, 1994. |
[2197] | T. P. Stauffer and T. Meyer. Compartmentalized ige receptor-mediated signal transduction in living cells. J Cell Biol, 139(6):1447-54, 1997. |
[2198] | B. van Steensel, E.P. van Binnendijk, H.T.M. van der Hornsby, C.D. Voort, Z. Krozowski, E.R. de Kloet, and R. van Driel. Partial colocalization of glucocorticoid and mineralocorticoid receptors in discrete compartments in nuclei of rat hippocampus neurons. Journal of Cell Science, 109:787-792, 1996. |
[2199] | E. Stein, E.M. Stein, and G. Weiss. Introduction to Fourier Analysis on Euclidean Spaces. Princeton University Press, 1971. |
[2200] | A. Steinecker and W. Mader. Measurement of lens aberrations by means of image displacements in beam-tilt series. Ultramicroscopy, 81:149-161, 2000. |
[2201] | S. Stepanow. Statistical mechanics of semiflexible polymers. The European Physical Journal B, 39(4):499-512, 2004. |
[2202] |
S. Stepanow and G. M. Sch ütz. The distribution function of a semiflexible polymer and random walks with constraints. Europhysics Letters (EPL), 60(4):546-551, 2002. |
[2203] | A. Stewart and N. Grigorieff. Noise bias in the refinement of structures deried from single particles. Ultramicroscopy, 102:67-84, 2004. |
[2204] | H. Stöcker. Taschenbuch der Physik. Verlag Harri Deutsch, Frankfurt (Main), 4 edition, 2000. |
[2205] | G.C. Stockman and A.K. Agrawala. Equivalence of Hough curve detection to template matching. Communications of the ACM, 20(11):820-822, 1977. |
[2206] | R.G. Stockwell, L. Mansinha, and R.P. Lowe. Localization of the complex spectrum: the S transform. IEEE Transactions on Signal Processing, 44(4):998-1001, April 1996. |
[2207] | M. Stoeger-Pollach. Optical properties and bandgaps from low loss eels: Pitfalls and solutions. Micron, 39:1092-1110, 2008. |
[2208] | M. Stöger-Pollach, H. Franco, P. Schattschneider, S. Lazar, B. Schaffer, W. Grogger, and H.W. Zandbergen. Cerenkov losses: A limit for bandgap determination and Kramers-Kronig analysis. Micron, 37:396-402, 2006. |
[2209] | J.J. Stoker. Differential Geometry. John Wiley and Sons, Inc, 1969. |
[2210] | B.T. Stokke and D.A. Brant. The reliability of wormlike polysaccharides chain dimensions estimated from electron micrographs. Biopolymers, 30(13):1161-1181, 1990. |
[2211] | C. Storm and P. C. Nelson. The bend stiffness of S-DNA. Europhysics Letters (EPL), 62(5):760-766, 2003. |
[2212] | C. Storm and P. C. Nelson. Theory of high-force DNA stretching and overstretching. Physical Review E, 67(5):051906, 2003. |
[2213] | M.H.B. Stowell, A. Miyazawa, and N. Unwin. Macromolecular structure determination by electron microscopy: new advances and recent results. Current Opinion Structural Biology, 8:595-600, 1998. |
[2214] | D. Stoyan, W.S. Kendall, and J. Mecke. Stochastic Geometry and its Applications. John Wiley & Sons, inc, second edition, 1985, 1995. |
[2215] | G.J. Streekstra, R. van den Boomgaard, and A.W.M. Smeulders. Scale dependent differential geometry for the measurement of center line and diameter in 3d curvilinear structures. International Journal of Computer Vision, 42(3):177-189, 2001. |
[2216] | T.R. Strick, J.-F. Allemand, D. Bensimon, A. Bensimon, and V. Croquette. The Elasticity of a Single Supercoiled DNA Molecule. Science, 271(5257):1835-1837, 1996. |
[2217] | T.R. Strick, J.-F. Allemand, D. Bensimon, and V. Croquette. Behavior of Supercoiled DNA. Biophysical Journal, 74:2016-2028, 1998. |
[2218] | T.R. Strick, J.-F. Allemand, V. Croquette, and D. Bensimon. Physical Approaches to the Study of DNA. Journal of Statistical Physics, 93(3-4):647-672, 1998. |
[2219] | V. Studer, J. Bobin, M. Chahid, H. Moussavi, E. Candes, and M. Dahan. Hyperspectral fluorescence microscopy based on compressed sensing. In J.-A. Conchello, C.J. Cogswell, T. Wilson, and T.G. Brown, editors, Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIX, Proceedings of the SPIE, 2012. doi: 10.1117/12.908532. |
[2220] | D.S. Su, H.W. Zandbergen, P.C. Tiemeijer, G. Kothleitner, M. Hävecker, C. Hébert, A. Knop-Gericke, B.H. Freitag, F. Hofer, and R. Schlögl. High resolution eels using monochromator and high performance spectrometer: comparison of v2o5 ELNES with NEXAFS and band structure calculations. Micron, 34:235-238, 2003. |
[2221] | Nadja Subotic, Dimitri van de Ville, and Michael Unser. On the Feasability of Axial Tracking of a Fluorescent Nano-Particle Using a Defocusing Model. In Proceedings IEEE International Symposium on Biomedical Imaging: From Macro to Nano, volume 2, pages 1231-1234, 2004. |
[2222] | V. Subramaniam, Q.S. Hanley, A.H.A. Clayton, and T.M. Jovin. Photophysics of green and red fluorescent proteins: some implications for quantitative microscopy. Methods in Enzymology., 360:178-201, 2003. |
[2223] | K. Suenaaga, Y. Sato, Z. Liu, H. kataura, T. Okazaki, K. Kimoto, H. Sawada, T. Sasaki, K. Omoto, T. Kaneyama, and Y. Kondo. Visualizing and identifying single atoms using electron energy-loss spectroscopy with low accelerating voltage. Nature Chemistry, pages 1-4, 2009. |
[2224] | P. Sukanya, R. Takamatsu, and M. Sato. Multiscale image analysis through the surface-shape operator. Journal of Electronic Imaging, 9(3):305-316, July 2000. |
[2225] | J. Summerscales, F.J. Guild, N.R.L. Pearce, and P.M. Russell. Voronoi cells, fractal dimensions and fibre composites. Journal of Microscopy, 201, Pt 2:153-162, February 2001. |
[2226] | S. Svensson and G. Borgefors. Distance transforms in 3d using four different weights. Pattern Recognition Letters, 23:1407-1418, 2002. |
[2227] | L.W. Swanson and G.A. Schwind. A review of the cold-field electron cathode. Advances in Imaging and Electron Physics, 159:63-100, 2009. |
[2228] | C. Szent-Gyorgyi, B. F. Schmidt, Y. Creeger, G. W. Fisher, K. L. Zakel, S. Adler, J. A. J. Fitzpatrick, C. A. Woolford, Q. Yan, K. V. Vasilev, P. B. Berget, M. P. Bruchez, J. W. Jarvik, and A. Waggoner. Fluorogen-activating single-chain antibodies for imaging cell surface proteins (vol 26, pg 235, 2008). Nature Biotechnology, 26(4):470-470, 2008. |
[2229] | A. Szymborska, N. Marco, A de. Daigle, V.C. Cordes, J.A.G. Briggs, and J. Elllenberg. Nuclear pore scaffold structure analyzed by super-resolution microscopy and particle averaging. Science Express, page 10.1126, 2013. |
[2230] | H. Ta, J. Wolfrum, and D.-P. Herten. An extended scheme for counting fluorescent molecules by photon- antibunching. Laser Physics, 20(1):119-124, 2010. |
[2231] | Y. Takai, T. Nomaguchi, S. Matsushita, and Y. Kimura. Molecular-scale imaging of unstained deoxyribonucleic acid fibers by phase transmission electron microscopy. Applied Physics Letters, 89:133903, 2006. |
[2232] | A. Takaoka and T. Hasegawa. Observations of unstained biological specimens using a low-energy, high-resolution stem. Journal of Electron Microscopy, 55:157-163, 2006. |
[2233] | M. Takeguchi, A. Hasimoto, M. Shimojo, K. Mitsuishi, and K. Furuya. Development of a stage-scanning system for high-resolution confocal stem. Journal of Electron Microscopy, 57:123-127, 2008. |
[2234] | H. Talbot, T. Lee, D. Jeulin, D. Hanton, and L.W. Hobbs. Image analysis of insulation mineral fibres. Journal of Microscopy, 200, Pt 3:251-268, December 2000. |
[2235] | K. Tamrua, S. Okayama, and R. Shimizu. Third-order spherical aberration correction using multistage self-aligned quadrupole correction-lens systems. Journal of Electron Microscopy, 2010. |
[2236] | A. Tanaka, M. Kameyama, S. Kazama, and O. Watanabe. A rotation method for raster image using skew transformation. In CVPR'86, IEEE Conference on Computer Vision and Pattern Recognition, pages 272-277, 1986. |
[2237] | C.-K. Tang and G. Medioni. Curvature-augmented tensor voting for shape interference from noisy 3d data. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(6):858-864, 2002. |
[2238] | Chi-Keung Tang, G. Medioni, and Mi-Suen Lee. N-dimensional tensor voting and application to epipolar geometry estimation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23(8):829 -844, 2001. |
[2239] | C.K. Tang and G. Medioni. Inference of integrated surface, curve, and junction descriptions from sparse 3d data. IEEE Transactions on Pattern Analysis and Machine Intelligence, 20(11):1206-1223, 1998. |
[2240] | G. Tang, L. Peng, P.R. Baldwin, D.S. Mann, W. Jiang, I. Rees, and S.J. Ludtke. Eman2: An extensible image processing suite for electron microscopy. Journal of Strcutural Biology, 157:38-46, 2007. |
[2241] | E.C. Tarabusi, J.M. Cohen, and F. Colonna. Characterization of the range of the radon transform on homogeneous trees. Electronic Research Announcements of the American Mathematical Society, 5:11-17, February 1999. |
[2242] | T.A. Taton, C.A. Mirkin, and R.L. Lestinger. Two-color labeling of oligonucleotide arrays via size-selctive scattering of nanoparticles. Journal of the American Chemical Society, 123:5164-5165, 2001. |
[2243] | William H. Taylor and Paul J. Hagerman. Application of the Method of Phage T4 DNA Ligase-catalyzed Ring-closure to the Study of DNA Structure. Journal of Molecular Biology, 212(2):363-376, 1990. |
[2244] | Texas Instruments Technology. www.dlp.com. |
[2245] | A. Tejada and A.J. den Dekker. The role of Poisson's binomial distribution in the analysis of TEM images. Ultramicroscopy, 111:1553-1556, 2011. |
[2246] | I. Testa, A. Schönle, C. von Middendoff, C. Geisler, R. Medda, C.A. Wurm, A.C. Stiel, S. Jakobs, M. Bossi, C. Eggeling, S.W. Hell, and A. Egner. Nanoscale separation of molecular species based on their rotational mobility. Optics Express, 16(25):21094-21105, 2008. |
[2247] | I. Testa, C.A. Wurm, R. Medda, E. Rothermel, C. von Middendorf, J. Fölling, S. Jakobs, A. Schönle, S.W. Hell, and C. Eggeling. Multicolor fluorescence nanoscopy in fixed and living cells by exciting conventional fluorophores with a single wavelength. Biophysical Journal, 99:2686-2694, 2010. |
[2248] | A. Teuner, O. Pichler, and B.J. Hosticka. Unsupervised texture segmentation of images using tuned matched gabor filters. IEEE Transactions on Image Processing, 4(6):863-870, June 1995. |
[2249] | B.B. Thapa, P. Hughett, and K. Karasaki. Semi-automatic analysis of rock fracture orientations from borehole wall images. Geophysics, 62(1):129-137, January/February 1997. |
[2250] | P. Thévenaz, T. Blu, and Unser M. Image interpolation and resampling. In I. Bankman, editor, Handbook of Medical Image Processing. Academic Press, 2000. |
[2251] | J.P. Thirion and A. Gourdon. Computing the differential characteristics of isointensity surfaces. Computer Vision and Image Understanding, 61(2):190-202, 1995. |
[2252] | L.H. Thomas. Applications of Digital Computers, chapter Using Computers to Solve Problems in Physics. Ginn and Co., Boston, 1963. |
[2253] | R.E. Thompson, D.R. Larson, and W.W. Webb. Precise nanometer localization analysis for individual fluorescent probes. Biophysical Journal, 82:2775-2783, 2002. |
[2254] | D.J. Thomson. Spectrum estimation and harmonic analysis. Proceedings of the IEEE, 70(9):1055-1096, September 1982. |
[2255] | J.F. Thovert, J. Salles, and P.M. Adler. Computerized characterization of the geometry of real porous media: their discretization, analysis and interpretation. Journal of Microscopy, 170, Pt 1:65-79, April 1993. |
[2256] | P.R. Thrift and S.M. Dunn. Approximating point-set images by line segments using a variation of the Hough transform. Computer Vision, Graphics and Image Processing, 21(3):383-394, 1983. |
[2257] | S. Thurnhofer and S.K. Mitra. A general framework for quadratic Volterra filter for edge enhancement. IEEE Transactions on Image Processing, 5(6):950-963, June 1996. |
[2258] | A. Thust. High-resolution transmission electron microscopy on an absolute contrast scale. Physical Review Letters, 102:220801, 2009. |
[2259] | A. Thust, W.M.J. Coene, M. op de Beeck, and D. van Dyck. Focal-series reconstruction in HRTEM: simulation studies on non-peridc objects. Ultramicroscopy, 64:211-230, 1996. |
[2260] | A. Thust, M.H.F. Overwijk, W.M.J. Coene, and M. Lentzen. Numerical correction of lens aberrations in phase-retrieval HRTEM. Ultramicroscopy, 64:249-264, 1996. |
[2261] | A. Thust and K. Urban. Quantitative high-speed matching of high-resolution electron microscopy images. Ultramicroscopy, 45:23-45, 1992. |
[2262] | L. Tian, J. Lee, S.B. Oh, and G. Barbastathis. Experimental compressive phase space tomography. Optics Express, 20(8):8296-8308, 2012. |
[2263] | P.C. Tiemeijer. Measurement of coulomb interactions in an electron beam monochromator. Ultramicroscopy, 78:53-62, 1999. |
[2264] | P.C. Tiemeijer. Operation modes of a TEM monochromator. volume 161 of Electron Microscopy and Analysis Group Conference EMAG99, pages 191-196, Sheffiled, UK, 1999. IOP Publishing Ltd. |
[2265] | J. A. Timlin, D. M. Haaland, M. B. Sinclair, A. D. Aragon, M. J. Martinez, and M. Werner-Washburne. Hyperspectral microarray scanning: impact on the accuracy and reliability of gene expression data. BMC Genomics, 6(1):72, 2005. |
[2266] | Bernard Tinland, Alain Pluen, Jean Sturm, and Gilbert Weill. Persistence Length of Single-Stranded DNA. Macromolecules, 30(19):5763-5765, 1997. |
[2267] | T. Toffoli. Three-dimensional rotations by three shears. Graphical Models and Image Processing, 59(2):89-95, March 1997. |
[2268] | P. Toft. The Radon Transform - Theory and Implementation. PhD thesis, Technical University of Denmark, Department of Mathematical Modeling, Denmark, June 1996. |
[2269] | M. Tokunaga, N. Imamoto, and K. Sakata-Sogawa. Highly inclined thin illumination enables clear single-molecule imaging in cells. Nature Methods, 5(2):159-161, 2008. |
[2270] | R. Tolimieri and M. An. Lesser known FFT algorithms, 2000. 20th Century Harmonic Analysis - A Celebration, NATO Advanced Study Institute. |
[2271] | C. Tomasi and R. Manduchi. Bilateral filtering for gray and color images. In Proceedings of the Sixth International Conference on Computer Vision, ICCV'98 (Bombay, India), pages 836-846. Narosa Publishing House, January 4-7 1988. |
[2272] | C. Tomasi and R. Manduchi. Stereo matching as a nearest-neighbor problem. IEEE Transactions on Pattern Analysis and Machine Intelligence, 20(3):333-340, March 1998. |
[2273] | M. Topf, M.L. Baker, B. John, W. Chiu, and A. Sali. Structural characterization of components of protein assemblies 3 by comparative modeling and electron cryo-microscopy. Journal of Structural Biology, 149:191-203, 2005. |
[2274] | T. Toplak, E. Pandzic, L. Chen, M. Vicente-Manzanares, A.R. Horwitz, and P.W. Wiseman. STICCS reveals matrix-dependent adhesion slipping and gripping in migrating cells. Biophysical Journal, 103:1672-1682, 2012. |
[2275] | E. Toprak, H. Balci, B.H. Blehm, and P.R. Selvin. Three-dimensional particle tracking via bifocal imaging. Nano Letters, 7(7):2043-2045, 2007. |
[2276] | E. Toprak, J. Enderlein, S. Syed, S.A. McKinney, R.G. Petschek, T. Ha, Y.E. Goldman, and P.R. Selvin. Defocused orientation and position imaging (DOPI) of myosin V. Proceedings of the National Academy of Sciences USA, 103(17):6495-6499, 2006. |
[2277] | P. Török, P.D. Higdon, and T. Wilson. On the general properties of polarised light conventional and confocal microscopes. Optics Communications, 148(4-6):300-315, 1998. |
[2278] |
P. T ör ök, C. J. R. Sheppard, and Z. Laxzik. Dark-field and differential phase contrast imaging modes in confocal microscopy using a half-aperture stop. Optik, 103(3):101-106, 1996. |
[2279] | P. Török, P. Varga, Z. Laczik, and G.R. Booker. Electromagnetic diffraction of light focused through a planar interface between materials of mismatched refractive indices: an integral representation. Journal of the Optical Society of America A, 12(2):325-332, 1995. |
[2280] | P.H.S. Torr and A. Zisserman. Robust parameterization and computation of the trifocal tensor. Image and Vision Computing, 15(8):591-605, 1997. |
[2281] | V. Torre and T.A. Poggio. On edge detection. IEEE Transactions on Pattern Analysis and Machine Intelligence, 8(2):1986, March 1986. |
[2282] | Kevin B. Towles, John F. Beausang, H.G. Garcia, Rob Philips, and Philip C. Nelson. First-principles calculation of DNA looping in tethered particle experiments. Physical Biology, 6:025001, 2009. |
[2283] | W. Trabesinger, B. Hecht, U.P. Wild, G.J. Schuetz, H. Schindler, and Th. Schmidt. Statistical analysis of single-molecule colocalization assays. Analytical Chemistry, 73(6):1100-1105, March 2001. |
[2284] | M.M.J. Treacy. When structural noise is the signal: Speckle statistics in fluctuation electron microscopy. Ultramicroscopy, 107:166-171, 2007. |
[2285] | M.M.J. Treacy and D. van Dyck. A surprise in the first Born approximation for electron scattering. Ultramicroscopy, 119:57-62, 2012. |
[2286] | O. Tretiak and L. Pastor. Velocity estimation for mimage sequences with second order differential operators. In Int. Conf. on Pattern Recognition (Montreal, Canada), pages 20-22. IEEE Computer Society Press, Los Alamitos, USA, 1984. |
[2287] | D.W. Tuggle. Emission Characteristics and Electron optical properties of the ZrO/W point cathode. PhD thesis, Oregon, USA, Oregon State University, 1984. |
[2288] | J. W. Tukey. Analysis of time series, chapter An introduction to the calculations of numerical spectrum analysis, pages 25-46. Wiley, New York, 1967. |
[2289] | J. W. Tukey. Exploratory Data Analysis. Addison-Wesley, Reading, Massachusetts, 1977. |
[2290] | A. Turchanin, A. Beyer, T. Nottbohm, X. Zhang, R. Stosch, , A.S. Sologubenko, J. Mayer, P. Hinze, T. Weimann, and Gölzhäuser. One nanometer thin carbon nanosheets with tunable conductivity and stiffness. Advanced Materials, 21:1233-1237, 2009. |
[2291] | D. Typke, K.H. Duwning, and R.M. Glaeser. Electron microscopy of biological macromolecules: Bridging the gap between what physics allows and what we currently can get. Microscopy and Microanalysis, 10:21-27, 2004. |
[2292] | M. Uchida and A. Tonomura. Generation of electron beams carrying orbital angular momentum. Nature, 464, 2010. |
[2293] | S. Uhlemann and M. Haider. Residual wave aberrations in the first spherical aberration corrected transmission electron microscope. Ultramicroscopy, 72:109-119, 1998. |
[2294] | S. Uhlemann and H. Rose. Acceptance of imaging energy filters. Ultramicroscopy, 63:161-167, 1996. |
[2295] | G.E. Uhlenbeck and L.S. Ornstein. On the Theory of the Brownian Motion. Physical Review, 36, 1930. |
[2296] | H. Uij-i, S.M. Melnikov, G. Deres, A. Bergamini, F. de Schryver, A. Herrmann, K. Müllen, J. Enderlein, and J. Hofkens. Visualizing spatial and temporal heterogeneity of single molecule rotational diffusion in a glassy polymer by defocused wide-field imaging. Polymer, 47:2511-2518, 2006. |
[2297] | M.H. Ulbrich and E.Y. Isacoff. Subunit counting in membrane-bound proteins. Nature Methods, 4(4):319-321, 2007. |
[2298] | M.H. Ulbrich and E.Y. Isacoff. Subunit counting in membrane-bound proteins. Nature Methods, 4(4):319-321, 2007. Supplementary Methods. |
[2299] | S. Uno, K. Honda, N. Nakamura, M. Matsuya, and J. Zach. Aberration correction and its automatic control in scanning electron microscopes. Optik, 116:438-448, 2005. |
[2300] | C. Ünsalan and A. Erçil. Conversions between parametric and implicit forms using polar/spherical coordinate representations. Computer Vision and Image Understanding, 81(1):1-25, 2001. |
[2301] | M. Unser. Sampling - 50 years after Shannon. Proceedings of the IEEE, 88(4):569-587, April 2000. |
[2302] | M. Unser, A. Aldroubi, and M. Eden. Fast B-spline transform for continuous image representation and interpolation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 13(3):277-285, March 1991. |
[2303] | M. Unser, D. Sage, and D. van de Ville. Multiresolution monogenic signal analysis using the Riesz-Laplace wavelet transform. IEEE TRANSACTIONS ON IMAGE PROCESSING, 18(11):2402-2418, 2011. |
[2304] | M. Unser, P. Thevenaz, and L. Yaroslavsky. Convolution-based interpolation for fast, high-quality rotation of images. IEEE Transactions on Image Processing, 4(10):1371-1381, 1995. |
[2305] | M. Unser, B.L. Trus, and A.C. Steven. A new resolution criterion based on spectral signal-to-noise ratio. Ultramicroscopy, 23:39-52, 1987. |
[2306] | Michael Unser. Splines: A perfect fit for signal and image processing. IEEE Signal Processing Magazine, pages 22-38, November 1999. |
[2307] | Michael Unser, Akram Aldroubi, and Murray Eden. Polynomial spline signal approximations: Filter design and asymptotic equivalence with shannon's sampling theorem. IEEE Transactions on Information Theory, 38(1):95-103, January 1992. |
[2308] | Michael Unser, Akram Aldroubi, and Murray Eden. B-spline signal processing: Part I - theory. IEEE Transactions on Signal Processing, 41(2):821-833, February 1993. |
[2309] | Michael Unser, Akram Aldroubi, and Murray Eden. B-spline signal processing: Part II - efficient design and applications. IEEE Transactions on Signal Processing, 41(2):834-848, February 1993. |
[2310] | Michael Unser, Akram Aldroubi, and Murray Eden. Enlargement or reduction of digital images with minimum loss of information. IEEE Transactions on Image Processing, 4(3):247-258, 1995. |
[2311] | K. Urban. Studying atomic structures by aberration-corrected transmission electron microscopy. Science, 321:506-510, 2008. |
[2312] | P.P. Vaidyanathan. Quadrature mirror filter banks, m-band extensions and perfect-reconstruction techniques. IEEE Acoustics, Speech, and Signal Processing Magazine, 4(3):4-20, July 1987. |
[2313] | D. Vakman. On the analytic signal, the Teager-Kaiser energy algorithm, and other methods for defining amplitude and frequency. IEEE Transactions on Signal Processing, 44(4):791-797, April 1996. |
[2314] | B. Valeur. Molecular Fluorescence. Wiley-VCH, Weinheim, 2002. |
[2315] | M. H. Van Benthem, M. R. Keenan, and D. M. Haaland. Application of equality constraints on variables during alternating least squares procedures. Journal of Chemometrics, 16:613-622, 2002. |
[2316] | J. van de Weijer and R. van den Boomgaard. Local mode filtering. In CVPR'01, Kauai, Hawaii, USA, Dec. 2001. |
[2317] | A. van den Bos. Parameter Estimation for Scientists and Engineers. Wiley & Sons, New Jersey, 2007. |
[2318] | B. van den Broek, F. Vanzi, D. Normanno, F.S. Pavone, and G.J.L. Wuite. Real-time observation of DNA looping dynamics of type IIE restriction enzymes NaeI and NarI. Nucleic Acids Research, 34(1):167-174, 2006. |
[2319] | T.M. van der Voort and K.C. Strassers. Restoration of confocal images for quantitative image analysis. J. Microscopy, 178:165-181, 1995. |
[2320] | H.J. van Elburg, L.C. Kuypers, W.F. Decraemer, and J.J.J. Dirckx. Improved correction of axial geometrical distortion in index-mismatched fluorescent confocal microscopic images using high-aperture objective lenses. Journal of Microscopy, 228(1):45-54, 2007. |
[2321] | Kim van Ommering, Philip A. Somers, Marjo Koets, Jean J.H.B. Schleipen, Leo J. van Ijzendoorn, and Menno W.J. Prins. Mobility and height detection of particle labels in an optical evanescent wave biosensor with single-label resolution. Journal of Physics D: Applied Physics, 43(15):155501, 2010. |
[2322] | Elaine T. Vandenberg, Lars Bertilsson, Bo Liedberg, Kajsa Uvdal, Ragnar Erlandsson, Hans Elwing, and Ingemar Lundstrom. Structure of 3-aminopropyl triethoxy silane on silicon oxide. Journal of Colloid and Interface Science, 147(1):103-118, 1991. |
[2323] | P. Vandergheynst and J.-F. Gobbers. Directional dyadic wavelet transforms: Design and algorithms. IEEE Transactions on Image Processing, 11(4):363-372, April 2002. |
[2324] | Francesco Vanzi, Chiara Broggio, Leonardo Sacconi, and Francesco Saverio Pavone. Lac repressor hinge flexibility and DNA looping: single molecule kinetics by tethered particle motion. Nucleic Acids Research, 34(12):3409-3420, 2006. |
[2325] | Francesco Vanzi, Serguei Vladimirov, Charlotte R. Knudsen, Yale E. Goldman, and Barry S. Cooperman. Protein synthesis by single ribosomes. RNA, 9(10):1174-1179, 2003. |
[2326] | A.M. Varabioiu and T.J. Mitchison. Structural insight into yeast septin organizaiton from polarized fluorescent micrsocopy. Nature, 443(466-469), 2006. |
[2327] | J.C. Vaughan, S. Jia, and X. Zhuang. Ultrabright photoactivatable fluorophores created by reductive caging. Nature Methods, 9(12):1181-1184, 2012. |
[2328] | S.L. Veatch, B.B. Machta, S.A. Shelby, E.N. Chiang, D.A. Holowka, and B.A. Baird. Correlation functions quantify super-resolution images and estimate apparent clustering due to over-counting. Plos ONE, 7(2):e31457, February 2012. |
[2329] | E.B. Vedel Jensen. Stereology and geometric tomography. Summer School, Sandbjerg Manor, Denmark, May 20-25 2000. |
[2330] | T.M. van Veen and F.C.A. Groen. Discretization error in the Hough transform. Pattern Recognition, 14:137-145, 1981. |
[2331] | S. Venkatesh and R. Owens. On the classification of image features. Pattern Recognition Letters, 11:339-349, May 1990. |
[2332] | Peter Vennemann, Ralph Lindken, and Jerry Westerweel. In vivo whole-field blood velocity measurement techniques. Experiments in Fluids, 42(3):495-511, 2007. |
[2333] | P.W. Verbeek. Continuous cube to cube mappings as analytic 3D look-up tables for RGB color rendering. |
[2334] | P.W. Verbeek. De relatie van Larkin, Bone and Oldfield (2001) en felsberg en sommer (2001) met het vectorgradient verhaal (pwv, submitted to icpr2002). |
[2335] | P.W. Verbeek. Line and edge detection by symmetry filters. |
[2336] | P.W. Verbeek. Space invariant image operations constructed from local direction detection and shift invariant filters. Technical report, Delft University of Technology, Pattern Recognition Group, 1982. |
[2337] | P.W. Verbeek. A class of sampling-error free measures in oversampled band-limited images. Pattern Recognition Letters, 3:287-292, 1985. |
[2338] | P.W. Verbeek. The GST as local mean squared friction. private communications, 1993. |
[2339] | P.W. Verbeek. Angular deconvolution. Internal Communication, 1996. |
[2340] | P.W. Verbeek. private communications, 1999. The GST as a projection operator. |
[2341] | P.W. Verbeek. Subspaces of generalised projection operators. Technical report, Delft University of Technology, Pattern Recognition Group, 2000. |
[2342] | P.W. Verbeek and J. Dijk. The D-dimensional inverse vector-gradient operator and its application for scale free image enhancement. In N. Petkov and M.A. Westenberg, editors, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands), LNCS 2756, pages 738-745, Berlin, August 25-27 2003. Springer. |
[2343] | P.W. Verbeek, L. Dorst, B.J.H. Verwer, and F.C.A. Groen. Collision avoidance and path finding through constrained distance transformation in robot state space. In Preprints Intelligent Autonomous Systems (Amsterdam, December 8-11), pages 634-641, 1986. |
[2344] | P.W. Verbeek, L.J. van Vliet, and J. van de Weijer. Improved curvature and anisotropy estimation for curved line bundles. In A.K. Jain, S. Venkatesh, and B.C. Lovell, editors, ICPR'98, Proc. 14th Int. Conference on Pattern Recognition, pages 528-533. IEEE Computer Society Press, Los Alamitos, 17-20 August 1998. |
[2345] | P.W. Verbeek and B.J.H. Verwer. 2-D adaptive smoothing by 3-D distance transformation. Pattern Recognition Letters, 9:53-65, 1989. |
[2346] | P.W. Verbeek and B.J.H Verwer. Shading from shape, the eikonal equation solved by grey-weighted distance transform. Pattern Recognition Letters, 11:681-690, 1990. |
[2347] | P.W. Verbeek and L.J. van Vliet. An estimator of edge length and surface area in digitized 2D and 3D images. In Proc. 11th IAPR Int. Conf. on Pattern Recognition, volume 3, pages 1-5. IEEE Computer Society Press, 1992. |
[2348] | P.W. Verbeek and L.J. van Vliet. Line and edge detection by symmetry filters. In Proc. 11th IAPR Int. Conf. on Pattern Recognition (ICPR11, The Hague, The Netherlands), volume III, pages 749-753. IEEE Computer Society Press, Los Alamitos, USA, August 30-September 3 1992. |
[2349] | P.W. Verbeek and L.J. van Vliet. Estimators of 2D edge length and position, 3D surface area and position in sampled grey-valued images. BioImaging, 1(1):46-61, 1993. |
[2350] | P.W. Verbeek and L.J. van Vliet. On the location error of curved edges in low-pass filtered 2-D and 3-D images. IEEE Transactions on Pattern Analysis and Machine Intelligence, 16(7):726-733, 1994. |
[2351] | P.W. Verbeek and L.J. van Vliet. On the location error of curved edges in low-pass filtered 2-D and 3-D images. PAMI, 16(7):726-733, 1994. |
[2352] | P.W. Verbeek and L.J. van Vliet. Approximate analytic paraboloid dilation. In G. Borgefors, editor, 9th Scandinavian Conference on Image Analysis (Uppsala, Sweden), volume 1, pages 95-102, June 6-9 1995. |
[2353] | P.W. Verbeek, H.A. Vrooman, and L.J. van Vliet. Low-level image processing by max-min filters. Signal Processing, 15(3):249-258, 1988. |
[2354] | R. Verdoold, R. Gill, F. Ungureanu, R. Molenaar, and R.P.H. Kooyman. Femtomolar DNA detection by parallel colorimetric darkfield microscopy of functionalized gold nanoparticles. Biosensors and Bioelectronics, 27:77-81, 2011. |
[2355] | B.J Vermolen, Y. Garini, and I.T. Young. 3D restoration with multiple images acquired by a modified conventional microscope. Microscopy Research and Technique, 64:113-125, 2004. |
[2356] | P.J. Verveer. Computational and Optical Methods for Improving Resolution and Signal Quality in Fluorescence Microscopy. Thesis, Technische Universiteit Delft, Delft, The Netherlands, 1998. |
[2357] | P.J. Verveer, M.J. Gemkow, and T.M. Jovin. A comparison of image restoration approaches applied to three-dimensional confocal and wide-field fluorescence microscopy. Journal of Microscopy, 193(1):50-61, 1999. |
[2358] | P.J. Verveer, Q.S. Hanley, P.W. Verbeek, L.J. van Vliet, and T.M. Jovin. Theory of confocal fluorescence imaging in the programmable array microscope (pam). Journal of Microscopy, 198(3):192-198, 1998. |
[2359] | P.J. Verveer and T.M. Jovin. Acceleration of the ICTM image restoration algorithm. Journal of Microscopy, 188:191-195, 1997. |
[2360] | P.J. Verveer and T.M. Jovin. Improved restoration from multiple images of a single object: Application to fluorescence microscopy. Applied Optics, 37(26):6240-6239, 1998. |
[2361] | P.J. Verveer, A. Squire, and P.I.H. Bastiaens. Global analysis of fluorescence lifetime imaging microscopy data. Biophysical Journal, 78:2127-2137, 2000. |
[2362] | B.J.H. Verwer. Improved metrics in image processing applied to the hilditch skeleton. In Proceedings of the 9th IAPR international conference on pattern recognition (ICPR), (Rome, Italy), pages 137-142, November 1988. |
[2363] | B.J.H. Verwer. Local distances for distance transformations in two and three dimensions. Pattern Recognition Letters, 12:671-682, November 1991. |
[2364] | B.J.H. Verwer, L.J. van Vliet, and P.W. Verbeek. Binary and grey-value skeletons: Metrics and algorithms. Int. Journal of Pattern Recognition and Artificial Intelligence, 7(5):1287-1308, 1993. |
[2365] | B.J.H. Verwer, P.W. Verbeek, and S.T. Dekker. An efficient uniform cost algorithm applied to distance transforms. IEEE Transactions on Pattern Analysis and Machine Intelligence, 11(4):425-429, April 1989. |
[2366] | B.J.H. Verwer, L.J. van Vliet, and P.W. Verbeek. Binary and grey-value skeletons: Metrics and algorithms. Int. Journal of Pattern Recognition and Artificial Intelligence, 7(5):1287-1308, 1994. |
[2367] | E.J.W. Verwey and J.Th.G. Overbeek. Theory of the stability of lyophobic colloids. Elsevier, 1948. |
[2368] | M. Vetterli. Filter banks allowing perfect reconstruction. Signal Processing, 10(3):219-244, 1986. |
[2369] | M. Vetterli and H.J. Nussbaumer. Simple FFT and DCT algorithms with reduced number of operations. Signal Processing, 6:267-278, 1984. |
[2370] | T. Viero and D. Jeulin. Morphological extraction of line networks from noisy low-contrast images. Journal of Visual Communication and Image Representation, 6(4):335-347, December 1995. |
[2371] | E. Vigneau, C. Loisel, M.F. Devaux, and P. Cantoni. Number of particles for the determination of size distribution from microscopic images. Powder Technology, 107:243-250, 2000. |
[2372] | I.D. Vilfan, J. Lipfert, D.A. Koster, S.G. Lemay, and N.H. Dekker. Magnetic Tweezers for Single-Molecule Experiments. In P. Hinterdorfer and van Oijen A., editors, Springer Handbook of Single-Molecule Biophysics. Springer Science+Business Media, 2009. |
[2373] | J. Villasenor and R.N. Bracewell. Optical phase obtained by analogue hartley transformation. Nature, 330:735-737, December 1987. |
[2374] | J. Ville. Théorie et applications de la notion de signal analytique. Cables et Transmission, 2A(1):61-74, 1948. |
[2375] | L. Vincent. Morphological grayscale reconstruction in image analysis: Applications and efficient algorithms. IEEE Transactions on Image Processing, 2(2):176-201, April 1993. |
[2376] | L. Vincent and P. Soille. Watersheds in digital spaces: An efficient algorithm based on immersion simulations. IEEE Transactions on Pattern Analysis and Machine Intelligence, 13(6):583-598, June 1991. |
[2377] | R. Vincent and P.A. Midgley. Double concial beam-rocking system for measurement of integrated electron diffreation intensities. Ultramicroscopy, 53:271-282, 1994. |
[2378] | Mari-Liis Visnapuu and Eric C. Greene. Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition. Nature Structural & Molecular Biology, 16(10):1056-1062, 2009. |
[2379] | S.V. Vladimirov. A Collection of Problems on the Equations of Mathematical Physics. Springer, Heildelberg, 1986. |
[2380] | L.J. van Vliet. Adaptive filtering. from scaleable elliptic, and banana to leech filters. |
[2381] | L.J. van Vliet. Detection of end-points. |
[2382] | L.J. van Vliet. Grey-Scale Measurements in Multi-Dimensional Digitized Images. PhD thesis, Delft University of Technology, Delft, The Netherlands, October 1993. |
[2383] | L.J. van Vliet. Robust local max-min filters by normalized power-weighted filtering. In J. Kittler, M. Petrou, and M. Nixon, editors, ICPR17, Proceedings 17th International Conference on Pattern Recognition, pages 696-699, Los Alamitos, Cambridge, UK, August 23-26 2004. IEEE Computer Society Press. |
[2384] | L.J. van Vliet and C.L. Luengo Hendriks. Improving spatial resolution in exchange of temporal resolution in aliased image sequence. In B.K. Ersboll and P. Johansen, editors, Proc. 11th Scandinavian Conference on Image Analysis, pages 493-499, Lyngby, June 7-11 1999. Pattern Recognition Society of Denmark. |
[2385] | L.J. van Vliet and B. Rieger. private communications, May 2003. |
[2386] | L.J. van Vliet, D. Sudar, and I.T. Young. Cell Biology, volume III, chapter Digital Fluorescence Imaging Using Cooled CCD Array Cameras, pages 109-120. Academic Press, New York, 2nd edition, 1998. |
[2387] | L.J. van Vliet and P.W. Verbeek. Curvature and bending energy in digitized 2d and 3d images. In SCIA'93, pages 1403-1410, Tromsø, Norway, 1993. |
[2388] | L.J. van Vliet and P.W. Verbeek. Curvature and bending energy in digitized 2d and 3d images. In 8th Scandinavian Conference on Image Analysis, Tromsø Norway, pages 1403-1410, 1993. |
[2389] | L.J. van Vliet and P.W. Verbeek. Better geometric measurements based on photometric information. In Proc. IEEE Instrumentation and Measurement Technology Conf. IMTC94, pages 1357-1360, 1994. |
[2390] | L.J. van Vliet and P.W. Verbeek. Edge localization by mog filters: Multiple-of-gaussians. Pattern Recognition Letters, 15(5):485-496, 1994. |
[2391] | L.J. van Vliet and P.W. Verbeek. Estimators for orientation and anisotropy in digitized images. In J. van Katwijk, J.J. Gerbrands, M.R. van Steen, and J.F.M. Tonino, editors, ASCI'95, Proceedings of the First Annual Conference of the Advanced School for Computing and Imaging, pages 442-450, Heijen, The Netherlands, June 1995. |
[2392] | L.J. van. Vliet and P.W. Verbeek. Segmentation of overlapping objects. in L.J. van Vliet and I.T. Young (eds), Abstracts of the ASCI Imaging Workshop, Venray, The Netherlands, 5-6, October 1995. |
[2393] | L.J. van Vliet and P.W. Verbeek. Texture analysis and segmentation of subsurface images. Technical Report WC/40930, Shell, 1996. |
[2394] | L.J. van Vliet and B.J.H. Verwer. A contour processing method for fast binary neighbourhood operations. Pattern Recognition Letters, 7(1):27-36, 1988. |
[2395] | L.J. van Vliet, I.T. Young, and A.L.D. Beckers. An edge detection model based on nonlinear laplace filtering. In E.S. Gelsema and Kanal L.N., editors, Pattern Recognition and Artificial Intelligence, pages 63-73, North-Holland, 1988. Elsevier Science Publishers B.V. |
[2396] | L.J. van Vliet, I.T. Young, and A.L.D. Beckers. A nonlinear laplace operator as edge detector in noisy images. Computer Vision, Graphics and Image Processing, 45(2):167-195, 1989. |
[2397] | L.J. van Vliet, I.T. Young, and B.H. Mayall. The Athena semi-automated katyotyping system. Cytometry, 11(1):51-58, 1990. |
[2398] | L.J. van Vliet, I.T. Young, and P.W. Verbeek. Recursive gaussian derivative filters. In A.K. Jain, S. Venkatesh, and B.C. Lovell, editors, ICPR'98, Proc. 14th Int. Conference on Pattern Recognition, volume I, pages 509-514. IEEE Computer Society Press, Los Alamitos, 1998. |
[2399] | J. Vogelsang, T. Cordes, C. Forthmann, C. Steinhauer, and P. Tinnefeld. Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy. Proceedings of the National Academy of Sciences of the USA, 106(20):8107-8112, May 2009. |
[2400] | N. Volkmann, G. Ouyang, K.M. Trybus, D.J. DeRosier, S. Lowey, and D. Hanein. Myosin isoforms show unique conformations in the actin-bound state. Proceedings of the National Academy of Sciences of the United States of America, 100(6):3227-3232, 2003. |
[2401] | A. Volkmer, V. Subramaniam, D.J. Birch, and T.M. Jovin. One- and two-photon excited fluorescence lifetimes and anisotropy decays of green fluorescent proteins. Biophysical Journal, 78(3):1589-1598, 2000. |
[2402] | Alexander Vologodskii. DNA Extension under the Action of an External Force. Macromolecules, 27(20):5623-5625, 1994. |
[2403] | J. Vonck. Parameters a?ecting specimen flatness of two-dimensional crystals for electron crystallography. Ultramicroscopy, 85:123-129, 2000. |
[2404] | L.M. Voortman, E.M. Franken, L.J. van Vliet, and B. Rieger. Fast, spatially varying CTF correction in TEM. Ultramicroscopy, 118:26-34, 2012. |
[2405] | L.M. Voortman, S. Stallinga, R.H.M. Schoenmakers, L.J. van Vliet, and B. Rieger. A fast algorithm for computing and correcting the CTF for tilted, thick specimens in TEM. Ultramicroscopy, 111:1029-1036, 2011. |
[2406] | Tom Vosch, Yasuko Antoku, Jung-Cheng Hsiang, Chris I. Richards, Jose I. Gonzalez, and Robert M. Dickson. Strongly emissive individual DNA-encapsulated Ag nanoclusters as single-molecule fluorophores. Proceedings of the National Academy of Sciences of the USA, 104(31):12616-12621, 2007. |
[2407] | A.M. Vossepoel. A note on distance transformations in digital images. Computer Vision, Graphics, and Image Processing, 43:88-97, 1988. |
[2408] | A.M. Vossepoel and A.W.M. Smeulders. Vector code probability and metrication error in the representation of straight lines of finite length. Computer Graphics and Image Processing, 20:347-364, 1982. |
[2409] | A.M. Vossepoel, A.W.M Smeulders, and K. van den Broek. Dioda: Delineation and feature extraction of microscopical objects. Computer Programs in Biomedicine, 10:231-244, 1979. |
[2410] | A.M. Vrabioiu and T.J. Mitschison. Structural insights into yeast septin organization from polarized fluorescence microscopy. Nature, 443(28):446-449, 2006. |
[2411] | A.H.B. de Vries, J.S. Kanger, B.E. Krenn, and R. van Driel. Patterned electroplating of micrometer scale magnetic structures on glass substrates. Journal of Microelectromechanical Systems, 13(4):391-395, 2004. |
[2412] | A.H.B. de Vries, B.E. Krenn, R. van Driel, and J.S. Kanger. Micro magnetic tweezers for nanomanipulation inside live cells. Biophysical Journal, 88(3):2137-2144, 2005. |
[2413] | H.A. Vrooman. Quantitative analysis of interferograms. PhD thesis, Delft University of Technology, Delft, the Netherlands, 1991. |
[2414] | S. Vroonland. Superresolution using blinking emitters. Master's thesis, Delft University of Technology, Delft, The Netherlands, June 2010. |
[2415] | M. Vulovic. Modeling of Image Formation in Cryo Electron Microscopy. PhD thesis, Delft University of Technology, 13 June 2013. |
[2416] | M. Vulovic, P.L. Brandt, R.B.G. Ravelli, A.J. Koster, L.J. van Vliet, and B. Rieger. Estimation of defocus and astigmatism in transmission electron microscopy. In IEEE International Symposium on Biomedical Imaging, pages 1121-1124, Rotterdam, The Netherlands, April 14-17 2010. |
[2417] | M. Vulovic, E. Franken, R.B.G. Ravelli, L.J. van Vliet, and B. Rieger. Precise and unbiased estimation of astigmatism and defocus in transmission electron microscopy. Ultramicroscopy, 116:115-134, 2012. |
[2418] | M. Vulovic, R.B.G. Ravelli, L.J. van Vliet, A.J. Koster, I. Lazic, U. Lücken, H. Rullgårgd, O. Öktem, and B. Rieger. Image formation modeling in cryo electron microscopy. Journal of Structural Biology, 183(1):19-32, 2013. |
[2419] | M. Vulovic, B. Rieger, L.J. van Vliet, A.J. Koster, and R.B.G. Ravelli. A toolkit for the characterization of CCD cameras for transmission electron microscopy. Acta Crystallographica Section D, 66:97-109, 2010. |
[2420] | M. Vulovic, L.M. Voortman, L.J. van Vliet, and B. Rieger. When to use the projection assumption and the weak-phase object approximation in phase contrast cryo-EM. Ultramircoscopy, 136:61-66, 2014. |
[2421] | R. Waagepetersen. Contributions to the statistical modeling of image data and spatial point processes. www, 1997. University of Aarhus. |
[2422] | L. Waller, M. Tsang, S. Ponda, S. Young Yang, and G. Barbastathis. Phase and amplitude imaging from noisy images by kalman filtering. Optics Express, 19(3):2805-2815, 2011. |
[2423] | H. Wallrabe and A. Periasamy. Imaging protein molecules using fret and flim microscopy. Current Opinion in Biotechnology, 16(1):19-27, 2005. |
[2424] | W. Walter. Einführung in die Theorie der Distributionen. Spektrum Akademischer Verlag, 3 edition, 1994. |
[2425] | D. Walters. Selection of image primitives for general-purpose visual processing. Computer Vision, Graphics, and Image Processing, 37:261-298, 1987. |
[2426] | T. Walther, E. Quandt, H. Stegmann, A. Thesen, and G. Benner. First experimental test of a new monochromated and aberration-corrected 200 kV field-emission scanning transmission electron microscope. Ultramicroscopy, 106:963-969, 2006. |
[2427] | T. Walther and H. Stegmann. Preliminary results from the first monochromated and aberration corrected 200-kv field-emission scanning transmission electron microscope. Microscopy and Microanalysis, 12:498-505, 2006. |
[2428] | C. Wang, X. Gao, and X. Su. In vitro and in vivo imaging with quantum dots. Analytical and Bioanalytical Chemistry, 397(4):1397-1415, 2010. |
[2429] | H.-W. Wang and E. Nogales. An iterative fourier-bessel algorithm for reconstruction of helical structures with severe bessel overlap. Journal of Structural Biology, 149:65-78, 2005. |
[2430] | J. Wang, Q. Li, and R.F. Egerton. Probing the electronic structure of zno nanowires by valence electron energy loss spectroscopy. Micron, 38:346-353, 2007. |
[2431] | J. Wang, Q. Li, C. Ronning, D. Stichtenoth, S. Muller, and D. Tang. Nanomaterial electronic structure investigation by valence electron energy loss spectroscopy - an example of doped zno nanowires. Micron, 39:703-708, 2008. |
[2432] | J. Wang, M.J. Zhou, S.K. Hark, and Q. Li. Local electronic structure and luminescence properties of er doped zno nanowires. Applied Physics Letters, 89:221917, 2007. |
[2433] | Michelle D. Wang, Hong Yin, Robert Landick, Jeff Gelles, and Steven M. Block. Stretching DNA with Optical Tweezers. Biophysical Journal, 72(3):1335-1346, 1997. |
[2434] | P. Wang, G. Behan, M. Takeguchi, A. Hasimoto, K. Mituishi, M. Shimojo, A.I. Kirkland, and P.D. Nellist. Nanoscale energy-filtered scanning confocal electron microscopy using a double-aberration-corrected transmission electron microscope. Physical Review Letters, 104:200801, 2008. |
[2435] | Y. Wang, D. Liang, Y. Chang, and L. Ying. A hybrid total-variation minimization approach to compressed sensing. In IEEE International Symposium on Biomedical Imaging, pages 74-77, Barcelona, Spain, May 2-5 2012. IEEE. |
[2436] | Y. Wang, T. Quan, S. Zeng, and Z.-L. Huang. Palmer: a method capable of parallel localization of multiple emitters for high-density localization microscopy. Optics Express, 20(14):16039-16049, 2012. [ http ] |
[2437] | Y.Y. Wang, G. Feng, and A.L. Ritter. Electron-energy-loss and optical-transmittance investiationf of bi2sr2cacu2o8. Physical Review B, 42(1):420-425, 1990. |
[2438] | Y.Y. Wang, M. Kawasaki, J. Bruley, M. Gribelyuk, A. Domenicucci, and J. Gaudiello. Off-axis electron holography with a dual-lens imaging system andits usefulness in 2-d potential mapping of semiconductor devices. Ultramicroscopy, 101:63-72, 2004. |
[2439] | D. W. Warren, J. A. Hackwell, and D. J. Gutierrez. Compact prism spectrographs based on aplanatic principles. Optical Engineering, 36(4):1174-1182, 1997. |
[2440] | Lucas P. Watkins and Haw Yang. Information Bounsd and Optimal Analysis of Dynamic Single Molecule Measurements. Biophysical Journal, 86(6):4015-4029, 2004. |
[2441] | A.B. Watson. Image compression using the discrete cosine transform. The Mathematica Journal, 4(1):81-88, 1994. |
[2442] | J.D. Watson and F.H.C. Crick. Molecular structure of nucleic acids. Nature, 171(4356):737-738, April 1953. |
[2443] | G. Weber. Resolution of the fluorescence lifetimes in a heterogeneous system by phase and modulation measurements. Journal of Physical Chemistry, 85:949-953, 1981. |
[2444] | J. Weickert. Nonlinear diffusion scale-spaces. |
[2445] | J. Weickert. Coherence-enhancing diffusion of color images. Image and Vision Computing, 17:201-212, 1999. |
[2446] | J. Weickert, S. Ishikawa, and A. Imiya. On the history of gaussian scale-space axiomatics. |
[2447] | J. Weickert, S. Ishikawa, and A. Imiya. Linear scale-space has first been proposed in Japan. Journal of Mathematical Imaging and Vision, 10(3):237-252, 1999. |
[2448] | J. Weickert and C. Schörr. Variational optic flow computation with a spatio-temporal smoothness constraint. Journal of Mathematical Imaging and Vision, 14(3):245 - 255, 2001. |
[2449] | J. Weickert, B.M. ter Haar Romeny, and M.A. Viergever. Efficient and reliable schemes for nonlinear diffusion filtering. IEEE Transactions on Image Processing, 7(3):398-410, 1998. |
[2450] | J. van de Weijer, L.J. van Vliet, P.W. Verbeek, and M. van Ginkel. Curvature estimation in oriented patterns using curvilinear models applied to gradient vector fields. IEEE Transactions on Pattern Analysis and Machine Intelligence, 23(9):1035 -1042, 2001. |
[2451] | J. van de Weijer, L.J. van Vliet, P.W. Verbeek, and M. van Ginkel. Edge and corner detection by photometric quasi-invariants. IEEE Transactions on Pattern Analysis and Machine Intelligence, 27(4):625-630, 2005. |
[2452] | S. Weisenburger, B. Jing, A. Renn, and V. Sandoghdar. Cryogenic localization of single molecules with angstrom precision. In V. Prama and A. Egner, editors, Nanoimaging and Nanospectroscopy, Proc. of SPIE Vol. 8815, page 88450D, San Diego, USA, 22-29 Augustus 2013. |
[2453] | E.W. Weisstein. Concise Encyclopedia of Mathematics. CRC, 1999. |
[2454] | P. Welch. The use of fast fourier transform for the estimation of power spectra: A method based on time averaging over short, modified periodograms. IEEE Transactions on Audio and Electroacoustics, 15:70-73, 1967. |
[2455] | J. Westerweel. Digital particle image velocimetry - theory and application. PhD thesis, Delft University of Technology, Delft, The Netherlands, 1993. |
[2456] | J. Westerweel. Fundamentals of digital particle image velocimetry. Measurement Science and Technology, 8:1379-1392, 1997. |
[2457] | J. Westerweel. Theoretical analysis of the measurement precision in particle image velocimetry. Experiments in Fluids, 29(7):S3-S12, 2000. |
[2458] | C.-F. Westin and H. Knutsson. The Möbius strip parameterization for line extraction. In G. Sandini, editor, Computer Vision - ECCV92. Proceedings, 1992, volume 588 of LNCS 588, pages 33-38, Heidelberg, 1992. Springer, Springer-Verlag. |
[2459] | C.F. Westin. A Tensor Framework for Multidimensional Signal Processing. PhD thesis, Linköping University, Linköping, Sweden, 1994. |
[2460] | M. Wheeler and M. A. Zmuda. Processing color and complex data using mathematical morphology. In Proceedings of the IEEE, National Aerospace and Electronics Conference, volume 1, pages 618-624, Berlin, 2000. |
[2461] | R.T. Whitaker. Geometry-Limited Diffusion. PhD thesis, The University of North Carolina, Chapel Hill, North Carolina, 1993. |
[2462] | R.T. Whitaker and S.M. Pizer. A multi-scale approach to nonuniform diffusion. CVGIP Image Understanding, 57(1):99-110, January 1993. |
[2463] | W.J. Whitehouse. The quantitative morphology of anisotropy trabecular bone. Journal of Microscopy, 101:153-168, 1974. |
[2464] | W.J. Whitehouse and E.D. Dyson. Scanning electron microscope studies of trabecular bone in the proximal end of the human femur. J. Anatomy, 118:417-444, 1974. |
[2465] | J.M. Whittaker. On lidstone's series and two-point expansions of analytic functions. Proceedings London Math. Soc. (2), 36:451-469, 1934. |
[2466] | M.B. Whitworth and J.M. Alava. The imaging and measurement of bubbles in bread doughs. In G.M. Campbell, C. Webb, and S.S. Pandiella, editors, Bubbles In Food, pages 221-231, St. Paul, USA, 1999. Eagan Press. |
[2467] | K. Wicker. Increasing resolution and light efficiency in fluorescence microscopy. PhD thesis, King's College London, United Kingdom, October 2010. |
[2468] | K. Wicker and R. Heintzmann. Interferometric resolution improvement for confocal microscopes. Optics Express, 15(19):12206-12216, 2007. |
[2469] | K. Wicker and R. Heintzmann. Single-shot optical sectioning using polarization-coded structured illumination. Journal of Optics, page 084010, 2010. |
[2470] | K. Wicker, S. Sindbert, and R. Heintzmann. Characterisation of a resolution enhancing image inversion interferometer. Optics Express, 17(18):15491-15501, 2009. |
[2471] | N. Wiener. Extrapolation, interpolation and smoothing of stationary time series. Cambridge, MA : M.I.T. Press, 1949. |
[2472] | S. Wieser, M. Axmann, and G.J. Schütz. Versatile analysis of single-molecule tracking data by comprehensive testing against Monte Carlo simulations. Biophysical Journal, 95(12):5988-6001, 2008. |
[2473] | P. A. Wiggins, T. van der Heijden, F. Moreno-Herrero, A. Spakowitz, R. Philips, J. Windom, C. Dekker, and P. C. Nelson. High flexibility of DNA on short length scales probed by atomic force microscopy. Nature Nanotechnology, 1:137-141, 2006. |
[2474] | P.A. Wiggins and P.C. Nelson. Generalized theory of semiflexible polymers. Physical Review E, 73:031906, 2006. |
[2475] | E. Wigner. On the quantum correction for thermodynamic equilibrium. Physical Review, 40(5):749-759, June 1932. |
[2476] | C. van Wijk, R. Truyen, R.E. van Gelder, L.J. van Vliet, and F.M. Vos. On normalized convolution to measure curvature features for automatic polyp detection. In C. Barillot, D.R. Haynor, and P. Hellier, editors, LNCS 3216, MICCAI'04, pages 200-208, 2004. |
[2477] | Jan Wilhelm and Erwin Frey. Radial Distribution Function of Semiflexible Polymers. Physical Review Letters, 77(12):2581, 1996. |
[2478] | C. E. Willert and M. Gharib. Three-dimensional particle imaging with a single camera. Experiments in Fluids, 12:353-358, 1992. |
[2479] | C.E. Willert and M. Gharib. Digital particle image velocimetry. Experiments in Fluids, 10:181-193, 1991. |
[2480] | Gobush William, Yamakawa Hiromi, W. H. Stockmayer, and W. S. Magee. Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior. The Journal of Chemical Physics, 57(7):2839-2843, 1972. |
[2481] | G.M. Jr Williams, H.H. Marsh, and M. Hinds. Back-illuminated CCD imagers for high information content digital photography. Proceedings of SPIE, 1998. |
[2482] | B. S. Wilson, J. R. Pfeiffer, and J. M. Oliver. Observing fcepsilonri signaling from the inside of the mast cell membrane. Journal of Cell Biology, 149(5):1131-1142, 2000. |
[2483] | B. S. Wilson, S. L. Steinberg, K. Liederman, J. R. Pfeiffer, Z. Surviladze, J. Zhang, L. E. Samelson, L. H. Yang, P. G. Kotula, and J. M. Oliver. Markers for detergent-resistant lipid rafts occupy distinct and dynamic domains in native membranes. Molecular Biology of the Cell, 15(6):2580-2592, 2004. |
[2484] | R. Wilson and G.H. Granlund. The uncertainty principle in image processing. IEEE Transactions on Pattern Analysis and Machine Intelligence, 6(6):758-767, November 1984. |
[2485] | R. Wilson and H. H. Knutsson. Uncertainty and inference in the visual system. IEEE Transactions on Systems, Man and Cybernetics, 18(2):305-312, March/April 1988. |
[2486] | T. Wilson, R. Juskaitis, and P.D. Higdon. The imaging of dielectric point scatterers in conventional and confocal polarisation microscopes. Optics Communications, 141:298-313, 1997. |
[2487] | T. Wilson and C.J.R. Sheppard. Theory and Practice of Scanning Optical Microscopy. Academic Press, London,New York, 1984. |
[2488] | B.T. Wimberly, D.E. Brodersen, W.M. Jr. Clemons, R.J. Morgan-Warren, A.P. Carter, C. Vonrhein, T. Hartsch, and V. Ramakrishnan. Structure of the 30S ribosomal subunit. Nature, 407:327-339, 2005. |
[2489] | O. Wink, W.J. Niessen, B. Verdonck, and M.A. Viergever. Vessel axis determination using wave front propagation analysis. In W. Niessen and M.A. Viergever, editors, MICCAI'01, pages 845-853, 2001. |
[2490] | H. Winkler. 3d reconstruction and processing of volumetric data in cryo-electron tomography. Journal of Strcutural Biology, 157:126-137, 2007. |
[2491] | H. Winkler and K.A. Taylor. Focus gradient correction applied to tilt series image data used in electron tomography. Journal of Structural Biology, 143:24-32, 2003. |
[2492] | H. Winkler and K.A. Taylor. Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography. Ultramicroscopy, 106:240-254, 2006. |
[2493] | R.G. Winkler and P. Reineker. Finitie Size Distribution and Partition Functions of Gaussian Chains: Maximum Entropy Approach. Macromolecules, 25(24):6891-6896, 1992. |
[2494] | Roland G. Winkler, Peter Reineker, and Ludger Harnau. Models and equilibrium properties of stiff molecular chains. journal of Chemical Physics, 101(9):8119-8129, 1994. |
[2495] | S. Winograd. On computing the discrete Fourier transform. Proc. Nat. Acad. Sci. USA, 73(4):1005-1006, April 1976. |
[2496] | S. Winograd. On computing the discrete Fourier transform. Mathematics of Computation, 32(141):175-199, January 1978. |
[2497] | A. Witkin. Scale space filtering. In Proceedings of the International Conference on Artificial Intelligence, pages 1019-1023, Karlsruhe, Germany, October 1983. |
[2498] | S. Wolter, U. Endesfelder, S. van de Linde, M. Heilemann, and M. Sauer. Measuring localization performance of super-resolution algorithms on very active samples. Optics Express, 19(8):7020-7033, April 2011. |
[2499] | S. Wolter, A. Löschberger, T. Holm, S. Aufmkolk, M.-C. Dabauvalle, S. van de Linde, and M. Sauer. rapidSTORM: accurate, fast open-source software for localization microscopy. Nature Methods, 9(11):1040-1041, 2012. |
[2500] | S. Wolter, M. Schuttpelz, M. Tescherepanow, van de S. Linde, M. Heilemann, and M. Sauer. Real-time computation of subdiffraction-resolution fluorescence images. Journal of Microscopy, 237(1):12-22, 2010. |
[2501] | K. Wong, E. Kirkland, P. Xu, R. Loane, and J. Silcox. Measurement of spherical aberration in STEM. Ultramicroscopy, 40:139-150, 1992. |
[2502] | Wesley P. Wong and Ken Halvorsen. The effect of integration time on fluctuation measurements: calibrating an optical trap in the presence of motion blur. Optics Express, 14(25):12517-12531, 2006. |
[2503] | Y. Wong, Z. Lin, and R.J. Ober. Limit of the accuracy of parameter estimation for moving single molecules imaged by fluorescence microscopy. IEEE Transactions on Signal Processing, 59(3):895-911, 2011. |
[2504] | Y. Wong, Z. Lin, and R.J. Ober. Effect of time discretization on the limit of the accuracy of parameter estimation for moving single molecules imaged by fluorescence microscopy. In IEEE International Symposium on Biomedical Imaging, pages 1228-1231, Barcelona, Spain, May 2-5 2012. |
[2505] | R. Wormbacher, M. Heidbreder, S. van de Linde, M.P. Sheetz, M. Heilemann, V.W. Cornish, and M. Sauer. Live-cell super-resolution imaging with trimethoprim conjugates. Nature Methods, 7(9):717-722, 2010. |
[2506] | M. Worring and A.W.M. Smeulders. The accuracy and precision of curvature estimation methods. In Proceedings of the 11th IAPR International Conference on Pattern Recognition, pages 139-142, The Hague, The Netherlands, 1992. IEEE Computer Society Press. |
[2507] | M. Worring and A.W.M. Smeulders. Digital curvature estimation. CVGIP: Image Understanding, 58(3):336-382, 1993. |
[2508] | F.S. Wouters, P.J. Verveer, and P.I.H. Bastiaens. Imaging biochemistry inside cells. Trends in Cell Biology, 11:203-211, 2001. |
[2509] | Gunnar Wrobel, Joerg Schlingemann, Lars Hummerich, Heidi Kramer, Peter Lichter, and Meinhard Hahn. Optimization of high-density cDNA-microarray protocols by 'design of experiments'. Nucleic Acids Research, 131(12), 2003. |
[2510] | L. Wu, Y. Zhu, and J. Tafto. Picometer accuracy in measuring lattice displacements across planar faults by interferometry in coherent electron diffraction. Physical Review Letters, 85(24):5126-5129, 2000. |
[2511] | Mingming Wu, John W. Roberts, and Mark Buckley. Three-dimensional fluorescent particle tracking at micron-scale using a single camera. Experiments in Fluids, 38:461-465, 2005. |
[2512] | Q. Xing and T.A. Lograsso. A rapid method to correct objective lens astigmatism in a tem. Ultramicroscopy, 109:287-290, 2009. |
[2513] | Q. Xiong, M.K. Morphew, C.L. Schwartz, A.H. Hoenger, and D.N. Mastronarde. Ctf determination and correction for low dose tomographic tilt series. Journal of Structural Biology, 168:378-387, 2009. |
[2514] | G. Xu and C.L. Bajaj. Curvature computations of 2-manifolds in k. Journal of Computational Mathematics, 21(5):681 - 688, 2003. |
[2515] | J. Xu. Efficient morphological shape representation with overlapping disk components. IEEE Transactions on Image Processing, 10(9):1346 -1356, 2001. |
[2516] | K. Xu, H.P. Babcock, and X. Zhuang. Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton. Nature Methods, 9(2):185-190, 2012. |
[2517] | K. Xu, G. Zhong, and X. Zhuang. Actin, spectrin, and associated proteins form a periodic cytoskeletal structure in axons. Science, 339:452-456, 2013. |
[2518] | Q. Xu, D. van Dyck, and H.W. Zandbergen. From thickness dependent exit waves to projected potential: Thickness derivative approach. Ultramicroscopy, 110:535-542, 2010. |
[2519] | S. Xu. Motion and Optical Flow in Computer Vision. PhD thesis, Linköping University, Linköping, Sweden, 1996. |
[2520] | M. Yamaguchi, H. Okada, and Y. Namiki. Smart specimen preparation for freeze substitution and serial ultrathin sectioning of yeast cells. Journal of Electron Microscopy, 58:261-266, 2009. |
[2521] | Hiromi Yamakawa and Motoharu Fujii. Statistical mechanics of helical wormlike chains. I. Differential equations and moments. The Journal of Chemical Physics, 64(12):5222-5228, 1976. |
[2522] | Hiromi Yamakawa, Motoharu Fujii, and Jiro Shimada. Statistical mechanics of helical wormlike chains. II. Operational method and moments. The Journal of Chemical Physics, 65(6):2371-2376, 1976. |
[2523] | Hiromi Yamakawa and W. H. Stockmayer. Statistical Mechanics of Wormlike Chains. II. Excluded Volume Effects. The Journal of Chemical Physics, 57(7):2843-2854, 1972. |
[2524] | J. Yamasaki, H. Sawada, and N. Tanaka. First experiments of selected area nano-diffraction from semiconductor interfaces using a spherical aberration corrected TEM. Journal of Electron Microscopy, 54(2):123-126, 2005. |
[2525] | T. Yamazaki, Y. Kotaka, Y. Kikuchi, and K. Watanabe. Precise measurement of third-order spherical aberration using low-order zone-axis Ronchigrams. Ultramicroscopy, 2005. in press. |
[2526] | X. Yan, R.S. Sinkovits, and T.S. Baker. Auto3dem - an automated and high throughput program for image reconstruction of icosahedral particles. Journal of Strcutural Biology, 157:73-82, 2007. |
[2527] | C. Yang, E.G. Ng, and P.A. Penczek. Unified 3-D structure and projection orientation refinement using quasi-Newton algorithm. Journal of Structural Biology, 149:53-64, 2005. |
[2528] | L. Yang, F. Albregtsen, and T. Taxt. Fast computation of three-dimensional geometric moments using a discrete divergence theorem and a generalization to higher dimensions. Graphical Models and Image Processing, 59(2):97-108, March 1997. |
[2529] | Y. Yarden and M. X. Sliwkowski. Untangling the erbb signalling network. Nat Rev Mol Cell Biol, 2(2):127-37, 2001. |
[2530] | L. Yaroslavsky. Boundary effect free and adaptive discrete signal sinc-interpolation algorithms for signal and image resampling. Applied Optics, 42(20):4166-4175, 2003. |
[2531] | S. Ye, P. Rabiller, and N. Keskes. Automatic high resolution sedimentary dip detection on borehole imagery. In SPWLA 38th Annual Logging Symposium, June 15-19 1997. |
[2532] | J.-C. Yen, F.-J. Chang, and S. Chang. A new criterion for automatic multilevel thresholding. IEEE Transactions on Image Processing, 4(3):370-378, 1995. |
[2533] | C.L.Y. Yeong and S. Torquato. Reconstructing random media. Physical review E, 57(1), January 1998. |
[2534] | C.L.Y. Yeong and S. Torquato. Reconstructing random media. II. three-dimensional media from two-dimensional cuts. Physical Review E, 58(1), July 1998. |
[2535] | Juan Yguerabide and Evangelina E. Yguerabide. Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. I. Theory. Analytical Biochemistry, 262:137-156 , 1998. |
[2536] | Juan Yguerabide and Evangelina E. Yguerabide. Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. II. Experimental Characterization. Analytical Biochemistry, 262:157-176, 1998. |
[2537] | Juan Yguerabide and Evangelina E. Yguerabide. Resonance Light Scattering Particles as Ultrasensitive Labels for Detection of Analytes in a Wide Range of Applications. Journal of Cellular Biochemistry Supplement, 84(S37):71-81, 2001. |
[2538] | F. Yi, P. Tiemeijer, and P.M. Voyles. Flexible formation of coherent probes on an aberrationcorrected stem with three condensers. Journal of Electron Microscopy, pages 1-7, 2010. |
[2539] | A. Yildiz, J.N. Forkey, S.A. McKinney, T. Ha, Y.E. Goldman, and P.R. Selvin. Myosin v walks hand-over-hand: Single fluorophore imaging with 1.5 nm localization. Science, 300:2061-2066, 2003. |
[2540] | H. Yin, R. Landick, and J. Gelles. Tethered particle motion method for studying transcript elongation by a single RNA polymerase molecule. Biophysical Journal, 67:2468-2478, 1994. |
[2541] | Z. Yin, Y. Zheng, P.C. Doerschuk, P. Nararajan, and J.E. Johnson. A statistical approach to computer processing of cryo-electron microscope images: virion classification and 3-D reconstruction. Journal of Structural Biology, 144:24-50, 2003. |
[2542] | K. Yonekura, M.B. Braunfeld, S. Mari-Yonekura, and D.A. Agard. Electron energy filtering significantly improves amplitude contrast of frozen-hydrated protein at 300 kv. Journal of Structural Biology, 156:524-536, 2006. |
[2543] | A.G. York, P. Chandris, D. Dalle Nogare, J. Head, P. Wawrzusin, R.S. Fischer, A. Chitnis, and H. Shroff. Instant super-resolution imaging in live cells and embryos via analog image processing. Nature Methods, 2013. doi:10.1038/nmeth.2687. |
[2544] | A.G. York, S.H. Parekh, D.D. Nogare, R.S. Fischer, K. Temprine, M. Mione, A.B. Chitnis, C.A. Combs, and H. Shroff. Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy. Nature Methods, 9(7):749-754, 2012. |
[2545] | Natsuhiko Yoshinaga, Kenichi Yoshikawa, and Satoru Kidoaki. Multiscaling in a long semiflexible polymer chain in two dimensions. Journal of Chemical Physics, 116(22), 2002. |
[2546] | Y. Yoshitoshi, Y. Matsumoto, and H. Kume. Focusing detection apparatus. US Patent 4,823,331, April 1987. |
[2547] | Y.-L. You and M. Kaveh. Ringing reduction in image restoration by orientation-selective regularization. IEEE Signal Processing Letters, 3(2):29-31, February 1996. |
[2548] | I.T. Young. Proof without prejudice: Use of the Kolmogorov-Smirnov test for the analysis of histograms from flow systems and other sources. Journal of Histochemistry and Cytochemistry, 25(7):935-941, 1977. |
[2549] | I.T. Young. Estimation of sampling errors. Cytometry, 6:273-275, 1985. |
[2550] | I.T. Young. Sampling density and quantitative microscopy. Analytic and Quantitative Cytology Histology, 10(4):269-275, 1988. |
[2551] | I.T. Young. Quantitative microscopy. IEEE Engineering in Medicine and Biology, 15(1):59-66, 1996. |
[2552] | I.T. Young, J.J. Gerbrands, and L.J. van Vliet. Image processing fundamentals. In V.K. Madisetti and D.B. Williams, editors, The Digital Signal Processing handbook, chapter 51. IEEE Press and CRC Press, 1998. |
[2553] | I.T. Young, R. Moerman, L.R. van den Doel, V. Iordanov, A. Kroon, H.R.C. Dietrich, G.W.K. van Dedem, A. Bossche, B.L. Gray, L. Sarro, P.W. Verbeek, and L.J. van Vliet. Monitoring enzymatic reactions in nanolitre wells. Journal of Microscopy, 212(3):254-263, 2003. |
[2554] | I.T. Young, L.J. van Vliet, and M. van Ginkel. Recursive gabor filtering. IEEE Transactions on Signal Processing, 50(11):2798-2805, 2002. |
[2555] | I.T. Young and L.J. van Vliet. Recursive implementation of the Gaussian filter. Signal Processing, 44(2):139-151, 1995. |
[2556] | I.T. Young, L.J. van Vliet, and M. van Ginkel. Recursive gabor filtering. In A. Sanfeliu, J.J. Villanueva, M. Vanrell, R. Alquezar, T. Huang, and J. Serra, editors, ICPR15, Proc. 15th Int. Conference on Pattern Recognition (Barcelona, Spain), volume 3, pages 342-345. IEEE Computer Society Press, Los Alamitos, September 3-7 2000. |
[2557] | I.T. Young, J.E. Walker, and J.E. Bowie. An analysis technique for biological shape I. Information and Control, 25(4):357-370, August 1974. |
[2558] | I.T. Young, R. Zagers, L.J. van Vliet, J. Mullikin, F.R. Boddeke, and H. Netten. Depth-of-focus in microscopy. In K. A. Høgda, B. Braathen, and K. Heia, editors, SCIA'93, Proceedings of the 8th Scandinavian Conference on Image Analysis, pages 493-498, Tromsø Norway, May 25-28 1993. Norwegian Society for Image Processing and Pattern Recognition. |
[2559] | W. Yu, K. Daniilidis, and G. Sommer. Rotated wedge averaging method for junction characterization. In Proc. Computer Society Conference on Computer Vision and Pattern Recognition, CVPR'98, Santa Barbara, USA, pages 390-395, June 23-25 1998. |
[2560] | W. Yu, K. Daniilidis, and G. Sommer. A new 3D orientation steerable filter. In Symposium für Mustererkennung, DAGM 2000, Kiel, Germany, pages 203-212. Springer Verlag, 2000. |
[2561] | W. Yu, K. Daniilidis, and G. Sommer. Approximate orientation steerability based on angular gaussians. IEEE Transactions on Image Processing, 10(2):193-205, February 2001. |
[2562] | W. Yu, G. Sommer, and K. Daniilidis. Three dimensional orientation signatures with conic kernel filtering for multiple motion analysis. Image and Vision Computing, 21(5):447-458, 2003. |
[2563] | S.Y. Yuen and C.H. Ma. An investigation of the nature of parameterization for the Hough transform. Pattern Recognition, 30(6):1009-1040, 1997. |
[2564] | A.L. Yuille and T. Poggio. Scaling theorems for zero crossings. IEEE Transactions on Pattern Recognition and Machine Intelligence, 8(1):15-25, January 1986. |
[2565] | A.L. Yuille and T. Poggio. Scaling and fingerprint theorems for zero-crossings. In Christopher Brown, editor, Advances in computer vision, volume 2, chapter 2, pages 47-78. Lawrence Erlbaum Associates, Inc, 1988. |
[2566] | P.J. Yunker, T. Still, and A.G. Lohr, M.A. Yodh. Suppression of the coffee-ring effect by shape-dependent capillary interactions. Nature, 476:308-311, 2011. |
[2567] | J. Zach. Method for detecting geometrical-optical aberrations. WO 01.56057, 2001. |
[2568] | J. Zach. Method for detecting geometrical-optical aberrations. US2003/0001102, 2003. |
[2569] | Zach2009. Aberration corrected scanning transmission electron microscopy: from atomic imaging and analysis to solving energy problems. Philosophical Transactions of the Royal Society, 367:3709-3733, 2009. |
[2570] | Zach2009. Chromatic correction: a revolution in electron microscopy? Philosophical Transactions of the Royal Society, 367:3699-3707, 2009. |
[2571] | G.W. Zack, W.E. Rogers, and S.A. Latt. Automatic measurement of sister chromatid exchange frequency. Journal of Histochemistry and Cytochemistry, 25(7):741-753, 1977. |
[2572] | M. van der Zande, C. Kok, and B. Rieger. Method for determining the aberration coefficients of the aberration function of a particle-opticle lens. EP1804272, 2009. |
[2573] | M.J. van der Zande and C. Kok. Aberration analysis in electron microscopy (Theory). Technical Note PR-TN-2004/00608, Philips Research, Eindhoven, The Netherlands, 2004. |
[2574] | M.J. van der Zande and C. Kok. Local magnification in ronchigrams (aberration retrieval in STEM). Technical Note PR-TN-2005/00002, Philips Research, Eindhoven, The Netherlands, 2005. |
[2575] | G. Zaneti, J.D. Riches, S.D. Fuller, and J.A.G. Briggs. Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging. Journal of Structural Biology, 168:305-312, 2009. |
[2576] | J. Zecevic, C.J. Gommes, H. Friedrich, P.E. de Jongh, and K.P. de Jong. Mesoporosity of zeolite Y: Quantitative three-dimensional study by image analysis of electron tomograms. Angewandte Chemie Int. Ed., 51(17):4213-4217, 2012. |
[2577] | F. Zemlin, K. Weiss, P. Schiske, W. Kunath, and K.-H. Herrmann. Coma-free alignment of high resolution electron microscopes with the aid of optical diffratctorgrams. Ultramicroscopy, 3:49-60, 1978. |
[2578] | J. Zemlin and F. Zemlin. Diffractogram tableaux by mouse click. Ultramicroscopy, 93:77-82, 2002. |
[2579] | S. di Zenzo. A note on the gradient of a multi-image. Computer Vision, Graphics and Image Processing, 33:116-125, 1986. |
[2580] | B.J. Zeskind, C.D. Jordan, W. Timp, L. Trapani, G. Waller, V. Horodincu, D.J. Ehrlich, and P. Matsudaira. Nucleic acid and protein mass mapping by live-cell deep-ultraviolet microscopy. Nature Methos, 4(7):567-569, 2007. |
[2581] | C. Zetzsche and E. Barth. Direct detection of flow discontinuities by 3d curvature operators. Pattern Recognition Letters, 12:771-779, 1991. |
[2582] | A. H. and Zewail. Four-dimensional electron microscopy. Science, 328:187-193, 2010. |
[2583] | B. Zhang, N. Chenouard, J.-C. Olivo-Marin, and V. Meas-Yedid. Statistical colocalization in biological imaging with false discovery control. In Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on, pages 1327 - 1330, May 2008. |
[2584] | B. Zhang, J. Zerubia, and J.-C. Olivio-Marin. Gaussian approximations of fluorescence microscope point-spread function models. Applied Optics, 46(10):1819-1829, 2007. |
[2585] | J. Zhang, J. Gao, and W. Liu. Image sequence segmentation using 3-d structure tensor and curve evolution. IEEE Transactions on Circuits and Systems for Video Technology, 11(5):629-641, May 2001. |
[2586] | L. Zhang and G. ren. IPET and FETR: Experimental approach for studying molecular structure dynamics by cryo-electron tomography of a single-molecule structure. PLOS one, 7(1):e30249, 2012. |
[2587] | P. Zhang, M.J. Borgnia, P. Mooney, D. Shi, M. Pan, P. O'Herron, A. Mao, D. Brogan, J.L.S. Milne, and S. Subramaniam. Automated image acquisition and processing using a new generation of 4Kx4K CCD cameras for cryo electron microscopic studies of macromolecular assemblies. Journal of Structural Biology, 143:135-144, 2003. |
[2588] | X. Zhang, E. Settembre, P.R. Xu. Chen, Dormitzer, R. Bellamy, S.C. Harrison, and N. Grigorieff. Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction. Proceedings of the National Academy of Science of America, 105(6):1867-1872, 2008. |
[2589] | Q. Zhao, L.-G. Öfverstedt, U. Skoglund, and L.A. Isaksson. Morphological variation of individual escherichia coli 50S ribosomal subunits in situ, as revealed by cryo-electron tomography. Experimental Cell Research, 300:190-201, 2004. |
[2590] | Q. Zheng and R. Chellappa. Automatic feature point extraction and tracking in image sequences for arbitrary camera motion. International Journal of Computer Vision, 15:31-76, 1995. |
[2591] | Q.S. Zheng, M.B. Braunfeld, J.W. Sedat, and D.A. Agard. An improved strategy for automated electron microscopic tomography. Journal of Structural Biology, 147:91-101, 2004. |
[2592] | S.Q. Zheng, J.M. Kollman, M.B. Braunfeld, J.W. Sedat, and D.A. Agard. Automated acquisition of electron microscopic random conical tilt sets. Journal of Strcutural Biology, 157:148-155, 2007. |
[2593] | C. Zhou and S.K. Nayar. Computational cameras: Convergence of optics and processing. IEEE Transactions on Image Processing, 20(12):3322-3340, 2011. |
[2594] | Z.H. Zhou, J. Dougherty, M. Jakana, J. He, F.J. Rixon, and W. Chiu. Seeing the herpesvirus capsid at 8.5. Science, 288:877-880, 2000. |
[2595] | Z.H. Zhou, S. Hardt, B. Wang, M.B. Sherman, J. Jakana, and W. Chiu. CTF determination of images of ice-embedded single particles using from cryoelectron micrographs to subnanometer resolution. Journal of Strcutural Biology, 116(1):216-22, 1996. |
[2596] | Z.H. Zhou, W. Liao, R.H. Cheng, J.E. Lawson, D.B. McCarthy, L.J. Reed, and J.K. Stoops. Direct evidence for the size and conformational variability of the pyruvate dehydrogenase complex revealed by three-dimensional electron microscopy. Journal of Biological Chemistry, 276(24):21704-21713, 2001. |
[2597] | Z.H. Zhou, D.B. McCarthy, C.M. O'Conor, L.J. Reed, and J.K. Stoops. The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes. Proceedings of the National Academy of Sciences of the United States of America, 98(26):14802-14807, 2001. |
[2598] | Z.H. Zhou, H. Zhang, J. Jakana, X.-Y. Lu, and J.-Q. Zhang. Cytoplasmic ployhedrosis virus structure at 8 by electron cryomicroscopy: Structural basis of capsid stability and mRNA processing regulation. Structure, 1:651-663, 2003. |
[2599] | Heng Zhu and Michael Snyder. Protein arrays and microarrays. Current Opinion in Chemical Biology, 5(1):40-45, 2001. |
[2600] | L. Zhu, W. Zhang, D. Elnatan, and B. Huang. Faster STORM using compressed sensing. Nature Methods, 9(7):721-726, 2012. |
[2601] | Qiang Zhu, Jun Zeng, Michael S. Triantafyllou, and Dick K.P. Yue. Direct Numerical Simulation of Single-Molecule DNA by Cable Dynamics. Journal of Microelectromechanical Systems, 15(5):1078-1087, 2006. |
[2602] | Y. Zhu, B. Carragher, R.M. Glaeser, D. Fellmann, C. Bajaj, M. Bern, F. Mouche, F. de Haas, R.J. Hall, D.J. Kriegman, S.J. Ludtke, S.P. Mallick, P.A. Penczek, A.M. Roseman, F.J. Sigworth, N. Volkmann, and C.S. Potter. Automatic particle selection: results of a comparative study. Journal of Structural Biology, 145:3-14, 2004. |
[2603] | Y. Zhu, H. Inada, K. Nakamura, and J. Wall. Imaging single atoms using secondary electrons with an aberration-corrected electron microscope. Nature Methods, 8:808-811, 2009. |
[2604] | A. Ziegler, J.C. Idrobo, M.K. Cinibulk, C. Kisielowski, N.D. Browning, and R.O. Ritchie. Interface structure and atomic bonding characteristic in silicon nitride ceramics. Science, 306:1768-1770, 2004. |
[2605] | Bruno H. Zimm. Dynamics of Polymer Molecules in Dilute Solution: Viscoelasticity, Flow Birefringence and Dielectric Loss. The Journal of Chemical Physics, 24(2):269-278, 1956. |
[2606] | T. Zimmermann, J. Rietdorf, A. Girod, V. Georget, and R. Pepperkok. Spectral imaging and linear un-mixing enables improved FRET effciency with a novel GFP2-YFP FRET pair. FEBS Letters, 531(2):245-249, 2002. |
[2607] | T. Zimmermann, J. Rietdorf, and R. Pepperkok. Spectral imaging and its application in live cell microscopy. FEBS Letters, 546(1):87-92, 2003. |
[2608] | V. Zinchuk, O. Zinchuk, and T. Okada. Quantitative colocalization analysis of multicolor confocal immunofluorescence microscopy images: Pushing pixels to explore biological phenomena. Acta Histochemica et Cytochemica, 40(4):101-111, 2007. |
[2609] | B. Zitová and J. Flusser. Image registration methods: a survey. Image and Vision Computing, 21(11):977-1000, 2003. |
[2610] | G. Zuccheri, A. Scipioni, V. Cavaliere, G. Gargiulo, P. de Sanits, and B. Samori. Mapping the intrinsic curvature and flexibility along the DNA chain. Proceedings of the National Academy of Sciences of the United States of America, 98(6):3074-3079, 2001. |
[2611] | S.W. Zucker. Early orientation selection: Tangent fields and the dimensionality of their support. Computer Vision, Graphics, and Image Processing, 32:74-103, 1985. |
[2612] | S.W. Zucker. Complexity and confusion in computational vision. In SCIA'99 the 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland), pages 1-10, June 7-11 1999. |
[2613] | S.W. Zucker and R.A. Hummel. A 3-d edge operator. IEEE Transactions on Pattern Analysis and Machine Intelligence, 3(3):324-331, 1981. |
[2614] | J.M. Zuo, I. Vartanyants, M. Gao, R. Zhang, and L.A. Nagahara. Atomic resolution imaging of a carbon nanotube from diffraction intensities. Science, 300:1419-1421, 2003. |
[2615] | C. Zurla, A. Franzini, G. Galli, D. D. Dunlap, D. E. A. Lewis, S. Adhya, and L. Finzi. Novel tethered particle motion analysis of CI protein-mediated DNA looping in the regulation of bacteriophage lambda. Journal of Physics: Condensed Matter, 18:S225-S234, 2006. |
[2616] | J.M. Zwier, G.J. van Rooij, J.W. Hofstraat, and G.J. Brakenhoff. Image calibration in fluorescence microscopy. Journal of Microscopy, 216(1):15-24, 2004. |
[2617] | R. Zwiggelaar, T. Parr, J.E. Schumm, I.W. Hutt, C.J. Taylor, S.M. Astley, and R.M. Boggis. Model-based detection of spiculated lesions in mammograms. Medical Image Analysis, 3(1):39-62, 1999. |
[2618] | R. Zwiggelaar and C.J. Taylor. Abnormal masses in mammograms: Detection using scale-orientation signatures. In Medical Image Computing and Computer-Assisted Intervention - MICCAI'98, Proc. 1st Int. Conf. (Cambridge, MA, USA, Oct.11-13), volume 1496 of Lecture Notes in Computer Science, Berlin, 1998. Springer Verlag. |
[2619] | http://www.ph.tn.tudelft.nl/~michael/qqnvphnv.html. |
This file was generated by bibtex2html 1.97.