Changeset 164 for qipapers.bib


Ignore:
Timestamp:
10/21/10 09:20:06 (15 years ago)
Author:
qipapers
Message:

commit via qipapers

File:
1 edited

Legend:

Unmodified
Added
Removed
  • qipapers.bib

    r163 r164  
    26052605@techreport{Almansa1998,
    26062606  author = {Almansa, A. and Lindeberg, T.},
    2607   title = {Fingerprint Enhanc
     2607  title = {Fingerprint Enhancement by Shape Adaptation of Scale-Space Operators with Automatic Scale Selection},
     2608  year = {1998},
     2609  institution = {University of the Republic of Uruguay},
     2610  annote = {Partial document}
     2611}
     2612@article{Hofmann1984,
     2613  author = {Hofmann, H. and Voss, T. and {K\"uhn}, K. and Engel, J.},
     2614  title = {Localization of flexible sites in thread-like molecules from electron micrographs. Comparison of interstitial, basement membrane and intima collagens},
     2615  journal = {Journal of Molecular Biology},
     2616  year = {1984},
     2617  volume = {172},
     2618  number = {3},
     2619  pages = {325-343}
     2620}
     2621@inproceedings{Aguado1996,
     2622  author = {Aguado, A.S. and Montiel, M.E. and Nixon, M.S.},
     2623  title = {Improving Parameter Space Decomposition for the Generalised {Hough} Transform},
     2624  year = {1996},
     2625  volume = {3},
     2626  pages = {627--630},
     2627  month = {16--19 September},
     2628  booktitle = {International Conference on Image Processing}
     2629}
     2630@article{Roberts2001,
     2631  author = {Roberts, A.},
     2632  title = {Curvature attributes and their application to 3D interpreted horizons},
     2633  journal = {First Break},
     2634  year = {2001},
     2635  volume = {19},
     2636  number = {2},
     2637  pages = {85-100},
     2638  month = {February}
     2639}
     2640@inproceedings{Vliet1993akort,
     2641  author = {Vliet, L.J. van and Verbeek, P.W. },
     2642  title = {Curvature and Bending Energy in Digitized 2D and 3D Images },
     2643  year = {1993},
     2644  pages = {1403--1410 },
     2645  address = {{Troms\o }, Norway},
     2646  booktitle = {SCIA'93}
     2647}
     2648@article{Koenderink1992b,
     2649  author = {Koenderink, J.J. and Doorn, A.J. van},
     2650  title = {Second-order optic flow},
     2651  journal = {Journal of the Optical Society of America A},
     2652  year = {1992},
     2653  volume = {9},
     2654  number = {4},
     2655  pages = {530-538}
     2656}
     2657@book{Lakowicz1999,
     2658  author = {Lakowicz, J.R.},
     2659  title = {Principles of Fluorescence Spectroscopy},
     2660  year = {1999},
     2661  publisher = {Kluwer Academic Press},
     2662  address = {New York},
     2663  edition = {2nd}
     2664}
     2665@article{Cardoso1998,
     2666  author = {Cardoso, J.-F.},
     2667  title = {Blind signal separation: statistical principles},
     2668  journal = {Proceedings of the IEEE},
     2669  year = {1998},
     2670  volume = {86},
     2671  number = {10},
     2672  pages = {2009-2025}
     2673}
     2674@article{Koenderink1992a,
     2675  author = {Koenderink, J.J. and Doorn, A.J. van},
     2676  title = {Surface shape and curvature scales},
     2677  journal = {Image and Vision Computing},
     2678  year = {1992},
     2679  volume = {10},
     2680  number = {8},
     2681  pages = {557--565}
     2682}
     2683@article{Kornprobst1999,
     2684  author = {Kornprobst, P. and Sand, S. and Deriche, R. and Aubert, G.},
     2685  title = {Image Sequence Analysis via Partial Differential Equations},
     2686  journal = {Journal of Mathematical Imaging and Vision},
     2687  year = {1999},
     2688  volume = {11},
     2689  pages = {5--26}
     2690}
     2691@article{Shevelev1998,
     2692  author = {Shevelev, I.A.},
     2693  title = {Second-order features extraction in the cat visual cortex: selective and invariant sensitivity of neurons to the shape and orientation of crosses and corners},
     2694  journal = {BioSystems},
     2695  year = {1998},
     2696  volume = {48},
     2697  pages = {195-204}
     2698}
     2699@article{Bacia2003,
     2700  author = {Bacia, K. and Schwille, P.},
     2701  title = {A dynamic view of cellular processes by in vivo fluorescence auto- and cross-correlation spectroscopy},
     2702  journal = {Methods},
     2703  year = {2003},
     2704  volume = {29},
     2705  number = {1},
     2706  pages = {74-85}
     2707}
     2708@article{Yuille1986,
     2709  author = {Yuille, A.L. and Poggio, T.},
     2710  title = {Scaling theorems for zero crossings},
     2711  journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
     2712  year = {1986},
     2713  volume = {8},
     2714  number = {1},
     2715  pages = {15--25},
     2716  month = {January}
     2717}
     2718@article{Volkmer2000,
     2719  author = {Volkmer, A. and Subramaniam, V. and Birch, D.J. and Jovin, T.M.},
     2720  title = {One- and two-photon excited fluorescence lifetimes and anisotropy decays of green fluorescent proteins},
     2721  journal = {Biophysical Journal},
     2722  year = {2000},
     2723  volume = {78},
     2724  number = {3},
     2725  pages = {1589-1598}
     2726}
     2727@article{Bigelow2003,
     2728  author = {Bigelow, C.E. and Conover, D.L. and Foster, T.H.},
     2729  title = {Confocal fluorescence spectroscopy and anisotropy imaging system},
     2730  journal = {Optics Letters},
     2731  year = {2003},
     2732  volume = {28},
     2733  number = {9},
     2734  pages = {695-697},
     2735  month = {May}
     2736}
     2737@inproceedings{Coeurjolly2001,
     2738  author = {Coeurjolly, D. and Miguet, S. and Tougne, L.},
     2739  title = {Discrete Curvature Based on Osculating Circle Estimation},
     2740  year = {2001},
     2741  volume = {2059},
     2742  pages = {303--312},
     2743  month = {May},
     2744  editor = {Arcelli, C. and Cordella, L.P. and Sanniti di Baja, G. },
     2745  publisher = {Springer-Verlag},
     2746  series = {Lecture Notes on Computer Science},
     2747  address = {Capri, Italy},
     2748  booktitle = {Visual Form 2001}
     2749}
     2750@book{Kak1988,
     2751  author = {Kak, A. C. and Slaney, M.},
     2752  title = {Principles of Computerized Tomographic Imaging},
     2753  year = {1988},
     2754  publisher = {IEEE Press}
     2755}
     2756@inproceedings{Cao1999,
     2757  author = {Cao, {Fr\'ed\'eric}},
     2758  title = {Morphological Scale Space and Mathematical Morphology},
     2759  year = {1999},
     2760  volume = {1682},
     2761  pages = {164--174},
     2762  month = {September},
     2763  editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
     2764  publisher = {Springer-Verlag},
     2765  series = {Lecture Notes on Computer Science},
     2766  address = {Berlin Heidelberg},
     2767  booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)}
     2768}
     2769@book{Leibovic1990,
     2770  author = {Leibovic (ed), K.N.},
     2771  title = {Science of Vision},
     2772  year = {1990},
     2773  publisher = {Springer-Verlag}
     2774}
     2775@inbook{Hediger2004,
     2776  author = {Hediger, F. and Taddei, A. and Neumann, F.R. and Gasser, S.M.},
     2777  title = {Methods for Visualizing Chromatin Dynamics in Living Yeast},
     2778  year = {2004},
     2779  volume = {375},
     2780  publisher = {Elsevier Academic Press},
     2781  series = {Methods in Enzymology},
     2782  chapter = {22}
     2783}
     2784@article{Axelrod2001,
     2785  author = {Axelrod, D.},
     2786  title = {Total Internal Reflection Fluorescence Microscopy in Cell Biology},
     2787  journal = {Traffic},
     2788  year = {2001},
     2789  volume = {2},
     2790  pages = {764-774}
     2791}
     2792@article{Kuwahara1980,
     2793  author = {Kuwahara, M. and Hachimura, K. and Kinoshita, M.},
     2794  title = {Image enhancement and left ventricular contour extraction techniques applied to radioisotope angiocardiograms},
     2795  journal = {Audiomedica},
     2796  year = {1980},
     2797  volume = {3},
     2798  pages = {107-119}
     2799}
     2800@inproceedings{Whitworth1999,
     2801  author = {Whitworth, M.B. and Alava, J.M.},
     2802  title = {The imaging and measurement of bubbles in bread doughs},
     2803  year = {1999},
     2804  pages = {221-231},
     2805  editor = {Campbell, G.M. and Webb, C. and Pandiella, S.S.},
     2806  publisher = {Eagan Press},
     2807  address = {St. Paul, USA},
     2808  booktitle = {Bubbles In Food}
     2809}
     2810@article{Daugman1988,
     2811  author = {Daugman, J.G.},
     2812  title = {Pattern and motion vision without Laplacian zero-crossings},
     2813  journal = {Journal of the Optical Society of America A},
     2814  year = {1988},
     2815  volume = {5},
     2816  number = {7},
     2817  pages = {1142--1148}
     2818}
     2819@book{Rutishauer1990,
     2820  author = {Rutishauer, H.},
     2821  title = {Lectures on numerical mathematics},
     2822  year = {1990},
     2823  publisher = {{Birkh\"auser}}
     2824}
     2825@article{Nagel1983,
     2826  author = {Nagel, H.H.},
     2827  title = {Displacement vectors derived from second-order intensity variations in image sequences},
     2828  journal = {Computer Graphics and Image Processing},
     2829  year = {1983},
     2830  volume = {21},
     2831  pages = {85-117}
     2832}
     2833@misc{BaddeleyXXXX,
     2834  author = {Baddeley, A.},
     2835  title = {Spatial Sampling and Censoring},
     2836  howpublished = {Some chapter. From www}
     2837}
     2838@article{Nagel1986,
     2839  author = {Nagel, H.H. and Enkelmann, W.},
     2840  title = {An investigation of smoothness constraints for the estimation of displacement vector fields form image sequences},
     2841  journal = {IEEE Transactions of Pattern Recognition and Machine Intelligence},
     2842  year = {1986},
     2843  volume = {8},
     2844  pages = {168-176}
     2845}
     2846@article{Daugman1985,
     2847  author = {Daugman, J.G.},
     2848  title = {Uncertainty Relation for Resolution in Space, Spatial Frequency, and Orientation Optimized by Two-dimensional Visual Cortical Filters},
     2849  journal = {Journal of the Optical Society of America A},
     2850  year = {1985},
     2851  volume = {2},
     2852  number = {7},
     2853  pages = {1160--1169},
     2854  month = {July}
     2855}
     2856@article{Sorzano2004,
     2857  author = {Sorzano, C.O.S. and Marabini, R. and Vel\'azquez-Muriel, J. and Bilbao-Castro, J.R. and Scherees, S.H.W. and Carazo, J.M. and Pascual-Montano, A.},
     2858  title = {{XMIPP:} a new generation of an open-source image processing package for electron microscopy},
     2859  journal = {Journal of Structural Biology},
     2860  year = {2004},
     2861  volume = {148},
     2862  pages = {194-204}
     2863}
     2864@article{Sorzano2001,
     2865  author = {Sorzano, C.O.S. and Marabini, R. and Boisset, N. and Rietzel, E. and {Schr\"oder}, R. and Herman, G.T. and Carazo, J.M.},
     2866  title = {The Effect of Overabundant Projection Directions on {3D} Reconstruction Algorithms},
     2867  journal = {Journal of Structural Biology},
     2868  year = {2001},
     2869  volume = {133},
     2870  pages = {108-118}
     2871}
     2872@inproceedings{Kerbyson1995,
     2873  author = {Kerbyson, D.J. and Atherton, T.J.},
     2874  title = {Circle Detection using {Hough} Transform Filters},
     2875  year = {1995},
     2876  pages = {370--374},
     2877  month = {4--6 July},
     2878  booktitle = {Image Processing and Its Applications}
     2879}
     2880@article{Meyer2004,
     2881  author = {Meyer, R.R. and Kirkland, A.I. and Saxton, W.O.},
     2882  title = {A new method for the determination of the wave aberration function for high-resolution {TEM}. {2. Measurement} of the antisymmetric aberrations},
     2883  journal = {Ultramicroscopy},
     2884  year = {2004},
     2885  volume = {99},
     2886  pages = {115-123}
     2887}
     2888@article{Lin1999,
     2889  author = {Lin, T. and Chen, Z. and Usha, R. and Stauffacher, C.V. and Dai, J.-B. and Schmidt, T. and Johnson, J.E.},
     2890  title = {The Refined Crystal Structure of Cowpea Mosaic Virus at 2.8 Resolution},
     2891  journal = {Virology},
     2892  year = {1999},
     2893  volume = {265},
     2894  pages = {20-34}
     2895}
     2896@book{Mitra2000,
     2897  author = {Mitra (Ed), S. and Sicuranza (Ed), G.},
     2898  title = {Nonlinear Image Processing},
     2899  year = {2000},
     2900  publisher = {Academic Press}
     2901}
     2902@book{HandbookCP1980,
     2903  title = {Handbook of Chemistry and Physics},
     2904  year = {1980},
     2905  editor = {Lide, D.R.},
     2906  publisher = {CRC Press},
     2907  edition = {60th}
     2908}
     2909@article{Olsen1994,
     2910  author = {Olsen, T. and DeStefano, J.},
     2911  title = {Wavelet Localization of the {R}adon Transform},
     2912  journal = {IEEE Transactions on Signal Processing},
     2913  year = {1994},
     2914  volume = {42},
     2915  number = {8},
     2916  pages = {2055--2067},
     2917  month = {August}
     2918}
     2919@inproceedings{Wijk2004,
     2920  author = {Wijk, C. van and Truyen, R. and Gelder, R.E. van and Vliet, L.J. van and Vos, F.M.},
     2921  title = {On Normalized Convolution to Measure Curvature Features for Automatic Polyp Detection},
     2922  year = {2004},
     2923  pages = {200-208},
     2924  editor = {Barillot, C. and Haynor, D.R. and Hellier, P.},
     2925  booktitle = {LNCS 3216, MICCAI'04}
     2926}
     2927@article{Aitken1995,
     2928  author = {Aitken, V.C. and Schwartz, H.M.},
     2929  title = {A Comparison of Rotational Representation in Structure and Motion Estimation for Maneuvering Objects},
     2930  journal = {IEEE Transactions on Image Processing},
     2931  year = {1995},
     2932  volume = {4},
     2933  number = {4},
     2934  pages = {516--520}
     2935}
     2936@article{Barber1996,
     2937  author = {Barber, C.B. and Dobkin, D.P. and Huhdanpaa, H.},
     2938  title = {The Quickhull Algorithm for Convex Hulls},
     2939  journal = {ACM Transactions on Mathematical Software},
     2940  year = {1996},
     2941  volume = {22},
     2942  number = {4},
     2943  pages = {469--483},
     2944  month = {December}
     2945}
     2946@book{Wilson1984a,
     2947  author = {Wilson, T. and Sheppard, C.J.R.},
     2948  title = {Theory and Practice of Scanning Optical Microscopy},
     2949  year = {1984},
     2950  publisher = {Academic Press},
     2951  address = {London,New York},
     2952  annote = {ph2341}
     2953}
     2954@misc{Zach2001,
     2955  author = {Zach, J.},
     2956  title = {Method for detecting geometrical-optical aberrations},
     2957  year = {2001},
     2958  howpublished = {WO 01.56057}
     2959}
     2960@article{Lee2001,
     2961  author = {Lee, S.-H. and Blake, R.},
     2962  title = {Neural Synergy in Visual Grouping: When Good Continuation Meets Common Fate},
     2963  journal = {Vision Research},
     2964  year = {2001},
     2965  volume = {41},
     2966  number = {16},
     2967  pages = {2057--2064},
     2968  month = {July}
     2969}
     2970@article{Lichte1996,
     2971  author = {Lichte, H.},
     2972  title = {Electron holography: optimum position of the biprism in the electron microscope},
     2973  journal = {Ultramicroscopy},
     2974  year = {1996},
     2975  volume = {64},
     2976  pages = {89-109}
     2977}
     2978@article{Lee2005,
     2979  author = {Lee, N.K. and Kapanidis, A.N. and Wang, Y. and Michalet, X. and Mukhopadhyay, J. and Ebright, R.H. and Weiss, S.},
     2980  title = {Accurate {FRET} Measurements within Single Diffusing Biomolecules Using Alternating-Laser Excitation},
     2981  journal = {Biophysical Journal},
     2982  year = {2005},
     2983  volume = {88},
     2984  number = {4},
     2985  pages = {2939-2953}
     2986}
     2987@misc{Verbeek1999,
     2988  author = {Verbeek, P.W.},
     2989  year = {1999},
     2990  howpublished = {private communications},
     2991  note = {The GST as a projection operator}
     2992}
     2993@article{Cuisenaire1999,
     2994  author = {Cuisenaire, O. and Macq, B.},
     2995  title = {Fast Euclidean distance transformation by propagation using multiple neighborhoods},
     2996  journal = { Computer Vision and Image Understanding},
     2997  year = {1999},
     2998  volume = {76},
     2999  number = {2},
     3000  pages = {163-172}
     3001}
     3002@inproceedings{Verbeek1995,
     3003  author = {Verbeek, P.W. and Vliet, L.J. van},
     3004  title = {Approximate Analytic Paraboloid Dilation},
     3005  year = {1995},
     3006  volume = {1},
     3007  pages = {95--102},
     3008  month = {June 6-9},
     3009  editor = {Borgefors, G.},
     3010  booktitle = {9th Scandinavian Conference on Image Analysis (Uppsala, Sweden)}
     3011}
     3012@inproceedings{Verbeek1998,
     3013  author = {Verbeek, P.W. and van Vliet, L.J. and van de Weijer, J.},
     3014  title = {Improved Curvature and Anisotropy Estimation for Curved Line Bundles},
     3015  year = {1998},
     3016  pages = {528--533},
     3017  month = {17-20 August},
     3018  editor = {Jain, A.K. and Venkatesh, S. and Lovell, B.C.},
     3019  publisher = {IEEE Computer Society Press, Los Alamitos},
     3020  booktitle = {ICPR'98, Proc. 14th Int. Conference on Pattern Recognition}
     3021}
     3022@article{Verbeek1990,
     3023  author = {Verbeek, P.W. and Verwer, B.J.H},
     3024  title = {Shading from shape, the eikonal equation solved by grey-weighted distance transform},
     3025  journal = {Pattern Recognition Letters},
     3026  year = {1990},
     3027  volume = {11},
     3028  pages = {681--690}
     3029}
     3030@misc{Verbeek1996,
     3031  author = {Verbeek, P.W.},
     3032  title = {Angular Deconvolution},
     3033  year = {1996},
     3034  howpublished = {Internal Communication}
     3035}
     3036@article{Verbeek1994,
     3037  author = {Verbeek, P.W. and Vliet, L.J. van},
     3038  title = {On the location error of curved edges in low-pass filtered {2-D} and {3-D} images},
     3039  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     3040  year = {1994},
     3041  volume = {16},
     3042  number = {7},
     3043  pages = {726--733}
     3044}
     3045@article{Verbeek1993,
     3046  author = {Verbeek, P.W. and Vliet, L.J. van},
     3047  title = {Estimators of {2D} edge length and position, {3D} surface area and position in sampled grey-valued images},
     3048  journal = {BioImaging},
     3049  year = {1993},
     3050  volume = {1},
     3051  number = {1},
     3052  pages = {46--61}
     3053}
     3054@inproceedings{Verbeek1992,
     3055  author = {Verbeek, P.W. and Vliet, L.J. van},
     3056  title = {Line and Edge Detection by Symmetry Filters},
     3057  year = {1992},
     3058  volume = {III},
     3059  pages = {749--753},
     3060  month = {August 30-September 3},
     3061  publisher = {IEEE Computer Society Press, Los Alamitos, USA},
     3062  booktitle = {Proc. 11th IAPR Int. Conf. on Pattern Recognition (ICPR11, The Hague, The Netherlands)}
     3063}
     3064@article{Griffith1973,
     3065  author = {Griffith, A.K.},
     3066  title = {Edge Detection in Simple Scenes Using A Priori Information},
     3067  journal = {IEEE Transactions on Computers},
     3068  year = {1973},
     3069  volume = {22},
     3070  number = {4},
     3071  pages = {371--381},
     3072  month = {April}
     3073}
     3074@article{Chermant2001,
     3075  author = {Chermant, J.-L. and Chermant, L. and Coster, M. and Dequiedt, A.-S. and Redon, C.},
     3076  title = {Some Fields of Applications of Automatic Image Analysis in Civil Engineering},
     3077  journal = {Cement {\&} Concrete Composites},
     3078  year = {2001},
     3079  volume = {23},
     3080  pages = {157--169}
     3081}
     3082@article{Thrift1983,
     3083  author = {Thrift, P.R. and Dunn, S.M.},
     3084  title = {Approximating Point-Set Images by Line Segments Using a Variation of the {H}ough Transform},
     3085  journal = {Computer Vision, Graphics and Image Processing},
     3086  year = {1983},
     3087  volume = {21},
     3088  number = {3},
     3089  pages = {383--394},
     3090  annote = {key_radon}
     3091}
     3092@misc{Rull1993,
     3093  author = {Rull, P.H.},
     3094  title = {{BARRY}: An Autonomous Train-Spotter},
     3095  year = {1993}
     3096}
     3097@article{Schellman1980a,
     3098  author = {Schellman, J.A.},
     3099  title = {The flexibility of {DNA : II. Spontaneous} and ligand induced distortions},
     3100  journal = {Biophysical Chemistry},
     3101  year = {1980},
     3102  volume = {11},
     3103  number = {3},
     3104  pages = {329-337}
     3105}
     3106@article{Tang2001,
     3107  author = {Tang, Chi-Keung and Medioni, G. and Lee, Mi-Suen},
     3108  title = {N-dimensional tensor voting and application to epipolar geometry estimation},
     3109  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     3110  year = {2001},
     3111  volume = {23},
     3112  number = {8},
     3113  pages = {829 -844}
     3114}
     3115@article{Park1996,
     3116  author = {Park, K.-R. and Lee, C.-N.},
     3117  title = {Scale-Space Using Mathematical Morphology},
     3118  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     3119  year = {1996},
     3120  volume = {18},
     3121  number = {11},
     3122  pages = {1121--1126}
     3123}
     3124@book{Haykin1999,
     3125  author = {Haykin, S.},
     3126  title = {Neural Networks, a comprehensive foundation},
     3127  year = {1999},
     3128  publisher = {Prentice-Hall},
     3129  edition = {second}
     3130}
     3131@inproceedings{Faugeras1992,
     3132  author = {Faugeras, O.D.},
     3133  title = {What Can Be Seen in Three Dimensions with an Uncalibrated Stereo Rig},
     3134  year = {1992},
     3135  pages = {563--578},
     3136  month = {May},
     3137  editor = {Sandini, G.},
     3138  publisher = {Springer},
     3139  series = {Lecture Notes in Computer Science 588},
     3140  address = {Santa Margherita Ligure, Italy},
     3141  booktitle = {Second European Conference on Computer Vision}
     3142}
     3143@article{Dequiedt2001,
     3144  author = {Dequiedt, A.-S. and Coster, M. and Chermant, L. and Chermant, J.-L.},
     3145  title = {Study of Phase Dispersion in Concrete by Image Analysis},
     3146  journal = {Cement \& Concrete Composites},
     3147  year = {2001},
     3148  volume = {23},
     3149  pages = {215--226}
     3150}
     3151@article{Tang2002,
     3152  author = {Tang, C.-K. and Medioni, G.},
     3153  title = {Curvature-Augmented Tensor Voting for Shape Interference from Noisy 3D Data},
     3154  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     3155  year = {2002},
     3156  volume = {24},
     3157  number = {6},
     3158  pages = {858--864}
     3159}
     3160@inproceedings{Hartley1992a,
     3161  author = {Hartley, R.I.},
     3162  title = {Estimation of Relative Camera Positions for Uncalibrated Cameras},
     3163  year = {1992},
     3164  pages = {579--587},
     3165  month = {May},
     3166  editor = {Sandini, G.},
     3167  publisher = {Springer},
     3168  series = {Lecture Notes in Computer Science 588},
     3169  address = {Santa Margherita Ligure, Italy},
     3170  booktitle = {Second European Conference on Computer Vision}
     3171}
     3172@article{Dalen2002,
     3173  author = {Dalen, G. van},
     3174  title = {Determination of the Water Droplet Size Distribution of Fat Spreads using Confocal Scanning Laser Microscopy},
     3175  journal = {Journal of Microscopy},
     3176  year = {2002},
     3177  volume = {208 Pt. 2},
     3178  pages = {116--133},
     3179  month = {November}
     3180}
     3181@article{Bergsma2001,
     3182  author = {Bergsma, C.B.J. and Streekstra, G.J. and Smeulders, A.W.M. and Manders, E.M.M.},
     3183  title = {Velocity Estimation of Spots in 3D Confocal Images Sequences of Living Cells},
     3184  journal = {Cytometry},
     3185  year = {2001},
     3186  volume = {43},
     3187  number = {4},
     3188  pages = {261--272}
     3189}
     3190@article{Florack1999,
     3191  author = {Florack, L.M.J. and Maas, R. and Niessen, W.J.},
     3192  title = {Pseudo-linear Scale-space Theory},
     3193  journal = {International Journal of Computer Vision},
     3194  year = {1999},
     3195  volume = {31},
     3196  number = {2/3},
     3197  pages = {247--259}
     3198}
     3199@phdthesis{Florack1993,
     3200  author = {Florack, L.M.J.},
     3201  title = {The Syntactical Structure of Scalar Images},
     3202  year = {1993},
     3203  school = {University of Utrecht, The Netherlands}
     3204}
     3205@article{Weijer2001a,
     3206  author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van},
     3207  title = {Curvature estimation in oriented patterns using curvilinear models applied to gradient vector fields},
     3208  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     3209  year = {2001},
     3210  volume = {23},
     3211  number = {9},
     3212  pages = {1035 -1042}
     3213}
     3214@article{Florack1998,
     3215  author = {Florack, L.M.J. and Niessen, W.J. and Nielsen, M.},
     3216  title = {The Intrinsic Structure of Optic Flow Incorporating Measurement Duality},
     3217  journal = {International Journal of Computer Vision},
     3218  year = {1998},
     3219  volume = {27},
     3220  number = {3},
     3221  pages = {263--286}
     3222}
     3223@article{Florack1992,
     3224  author = {Florack, L.M.J. and Haar Romeny, B.M. ter and Koenderink, J.J. and Viergever, M.A.},
     3225  title = {Scale and the Differential Structure of Images},
     3226  journal = {Image and Vision Computing},
     3227  year = {1992},
     3228  volume = {10},
     3229  number = {6},
     3230  pages = {376--388},
     3231  month = {July}
     3232}
     3233@article{Florack1994,
     3234  author = {Florack, L.M.J. and Haar Romeny, B.M. ter and Koenderink, J.J. and Viergever, M.A.},
     3235  title = {Linear Scale-Space},
     3236  journal = {Journal of Mathematical Imaging and Vision},
     3237  year = {1994},
     3238  volume = {4},
     3239  number = {4},
     3240  pages = {325--351},
     3241  month = {December}
     3242}
     3243@book{Florack1997,
     3244  author = {Florack, L.M.J.},
     3245  title = {Image Structure},
     3246  year = {1997},
     3247  publisher = {Kluwer Academic Publishers}
     3248}
     3249@article{Kim1990,
     3250  author = {Kim, N.H. and Bovik, A.C. and Aggarwal, S.J.},
     3251  title = {Shape Description of Biological Objects via Stereo Light Microscopy},
     3252  journal = {IEEE Transactions on Systems},
     3253  year = {1990},
     3254  volume = {20},
     3255  number = {2},
     3256  pages = {475--489}
     3257}
     3258@article{Borgefors1996,
     3259  author = {Borgefors, G.},
     3260  title = {On digital distance transforms in three dimensions},
     3261  journal = {Computer Vision and Image Understanding},
     3262  year = {1996},
     3263  volume = {64},
     3264  number = {3},
     3265  pages = {344-371}
     3266}
     3267@article{Komenda2001,
     3268  author = {Komenda, J.},
     3269  title = {Automatic Recognition of Complex Microstructures using the Image Classifier},
     3270  journal = {Materials Characterization},
     3271  year = {2001},
     3272  volume = {46},
     3273  number = {2--3},
     3274  pages = {87--92}
     3275}
     3276@article{Vetterli1984,
     3277  author = {Vetterli, M. and Nussbaumer, H.J.},
     3278  title = {Simple {FFT} and {DCT} Algorithms with Reduced Number of Operations},
     3279  journal = {Signal Processing},
     3280  year = {1984},
     3281  volume = {6},
     3282  pages = {267--278},
     3283  annote = {key_fft}
     3284}
     3285@article{Vetterli1986,
     3286  author = {Vetterli, M.},
     3287  title = {Filter Banks Allowing Perfect Reconstruction},
     3288  journal = {Signal Processing},
     3289  year = {1986},
     3290  volume = {10},
     3291  number = {3},
     3292  pages = {219--244}
     3293}
     3294@article{Florack1996,
     3295  author = {Florack, L.M.J. and Haar Romeny, B.M. ter and Viergever, M.A. and Koenderink, J.J.},
     3296  title = {The {Gaussian} Scale-Space Paradigm and the Multiscale Local Jet},
     3297  journal = {International Journal of Computer Vision},
     3298  year = {1996},
     3299  volume = {18},
     3300  pages = {61--75}
     3301}
     3302@phdthesis{Molenaar2003,
     3303  author = {Molenaar, C.},
     3304  title = {Methods for molecular analysis in living cells},
     3305  year = {2003},
     3306  month = {June},
     3307  address = {Leiden, The Netherlands},
     3308  school = {Leiden University Medical Center}
     3309}
     3310@inproceedings{Leavers1990,
     3311  author = {Leavers, V.F.},
     3312  title = {The Dynamic Generalized {H}ough transform},
     3313  year = {1990},
     3314  pages = {592--594},
     3315  editor = {O. Faugeras},
     3316  publisher = {Springer-Verlag},
     3317  booktitle = {Computer Vision -- ECCV90. Proceedings, 1990}
     3318}
     3319@book{Leavers1992,
     3320  author = {Leavers, V.F.},
     3321  title = {Shape Detection in Computer Vision Using the {H}ough Transform},
     3322  year = {1992},
     3323  publisher = {Springer-Verlag},
     3324  address = {London}
     3325}
     3326@article{Morgan2002,
     3327  author = {Morgan, D.G. and Mnntret, J.-F. and Neuhof, A. and Rapoport, T.A. and Akey, C.W.},
     3328  title = {Structure of the Mammalian Ribosome-Channel Complex at 17 Resolution},
     3329  journal = {Journal of Molecular Biology},
     3330  year = {2002},
     3331  volume = {324},
     3332  pages = {871-886}
     3333}
     3334@article{Su2003,
     3335  author = {Su, D.S. and Zandbergen, H.W. and Tiemeijer, P.C. and Kothleitner, G. and {H\"avecker}, M. and {H\'ebert}, C. and Knop-Gericke, A. and Freitag, B.H. and Hofer, F. and {Schl\"ogl}, R.},
     3336  title = {High resolution EELS using monochromator and high performance spectrometer: comparison of $V_2O_5$ {ELNES} with {NEXAFS} and band structure calculations},
     3337  journal = {Micron},
     3338  year = {2003},
     3339  volume = {34},
     3340  pages = {235-238}
     3341}
     3342@article{Thirion1995,
     3343  author = {Thirion, J.P. and Gourdon, A.},
     3344  title = {Computing the differential characteristics of isointensity surfaces},
     3345  journal = {Computer Vision and Image Understanding},
     3346  year = {1995},
     3347  volume = {61},
     3348  number = {2},
     3349  pages = {190--202}
     3350}
     3351@article{Rao1992,
     3352  author = {Rao, A.R. and Jain, R.C.},
     3353  title = {Computerized Flow Field Analysis: Oriented Texture Fields},
     3354  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     3355  year = {1992},
     3356  volume = {14},
     3357  number = {7},
     3358  pages = {693--709},
     3359  month = {July}
     3360}
     3361@article{Potter1999,
     3362  author = {Potter, C.S. and Chu, H. and Frey, B. and Green, C. and Kisseberth, N. and Madden, T.J. and Miller, K.L. and Nahrstedt, K. and Pulokas, J. and Reilein, A. and Tcheng, D. and Weber, D. and Carragher, B.},
     3363  title = {Leginon: a system for fully automated acquisition of 1000 electron micrographs a day},
     3364  journal = {Ultramicroscopy},
     3365  year = {1999},
     3366  volume = {77},
     3367  pages = {153-161}
     3368}
     3369@article{Ferraro1988,
     3370  author = {Ferraro, M. and Caelli, T.M.},
     3371  title = {Relationship between Integral Transform Invariances and {Lie} Group Theory},
     3372  journal = {Journal of the Optical Society of America A},
     3373  year = {1988},
     3374  volume = {5},
     3375  number = {5},
     3376  pages = {738--742},
     3377  month = {May}
     3378}
     3379@article{Rao1991,
     3380  author = {Rao, A.R. and Schunck, B.G.},
     3381  title = {Computing Oriented Texture Fields},
     3382  journal = {CVGIP: Graphical Models and Image Processing},
     3383  year = {1991},
     3384  volume = {53},
     3385  number = {2},
     3386  pages = {157--185},
     3387  month = {March}
     3388}
     3389@article{Gaspar1997,
     3390  author = {Gaspar, L.P. and Johnson, J.E. and Silva, J.L. and Poian, A.T. da},
     3391  title = {Partially Folded States of the Capsid Protein of Cowpea Severe Mosaic Virus in the Disassembly Pathway},
     3392  journal = {Journal of Molecular Biology},
     3393  year = {1997},
     3394  volume = {273},
     3395  pages = {456-466}
     3396}
     3397@article{Rieger2004,
     3398  author = {Rieger, B. and Vliet, L.J. van},
     3399  title = {A systematic approach to nD orientation representation},
     3400  journal = {Image and Vision Computing},
     3401  year = {2004},
     3402  volume = {22},
     3403  number = {6},
     3404  pages = {453-459}
     3405}
     3406@book{Papoulis1977,
     3407  author = {Papoulis, A.},
     3408  title = {Signal Analysis},
     3409  year = {1977},
     3410  publisher = {McGraw-Hill},
     3411  address = {New York}
     3412}
     3413@article{Hanbury2001,
     3414  author = {Hanbury, Allan G. and Serra, Jean},
     3415  title = {Morphological Operators on the Unit Circle},
     3416  journal = {IEEE Transactions on Image Processing},
     3417  year = {2001},
     3418  volume = {10},
     3419  number = {12},
     3420  pages = {1842--1850},
     3421  month = {December}
     3422}
     3423@inbook{Porat1994a,
     3424  author = {Porat, B.},
     3425  title = {Digital Signal Processing of Random Signals: Theory and Methods},
     3426  year = {1994},
     3427  publisher = {Prentice Hall},
     3428  chapter = {11.4}
     3429}
     3430@article{Villasenor1987,
     3431  author = {Villasenor, J. and Bracewell, R.N.},
     3432  title = {Optical Phase Obtained by Analogue Hartley Transformation},
     3433  journal = {Nature},
     3434  year = {1987},
     3435  volume = {330},
     3436  pages = {735--737},
     3437  month = {December}
     3438}
     3439@article{Lacey1998,
     3440  author = {Lacey, A.J. and Thacker, N.A. and Crossley, S. and Yates, R.B.},
     3441  title = {A Multi-Stage Approach to the Dense Estimation of Disparity from Stereo {SEM} Images},
     3442  journal = {Image and Vision Computing},
     3443  year = {1998},
     3444  volume = {16},
     3445  number = {5},
     3446  pages = {373--383}
     3447}
     3448@article{Sengupta2001,
     3449  author = {Sengupta, J. and Agrawal, R.K. and Frank, J.},
     3450  title = {Visualization of protein {S1} within the {30S} ribosomal subunit and its interaction with messenger {RNA}},
     3451  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     3452  year = {2001},
     3453  volume = {98},
     3454  pages = {11991-11996}
     3455}
     3456@article{Domer2003,
     3457  author = {{D\"omer}, H. and Bostanjoglo, O.},
     3458  title = {High-speed transmission electron microscope},
     3459  journal = {Review of Scientific Instruments},
     3460  year = {2003},
     3461  volume = {74},
     3462  number = {10},
     3463  pages = {4369-4372}
     3464}
     3465@inproceedings{Lacey1996,
     3466  author = {Lacey, A.J. and Thacker, N.A. and Yates, R.B.},
     3467  title = {Surface Approximation from Industrial {SEM} Images},
     3468  year = {1996},
     3469  address = {Edinburgh, Scotland},
     3470  booktitle = {Proceedings of the British Machine Vision Conference},
     3471  organization = {University of Edinburgh}
     3472}
     3473@article{Kimia1992,
     3474  author = {Kimia, B. and Tannenbaum, A. and Zucker, S.W.},
     3475  title = {On the Evolution of Curves via a Function of Curvature. I. The Classical Case},
     3476  journal = {Journal of Mathematical Analysis and Applications},
     3477  year = {1992},
     3478  volume = {163},
     3479  pages = {438--458}
     3480}
     3481@unpublished{Vliet1998b,
     3482  author = {Vliet, L.J. van},
     3483  title = {Adaptive Filtering. From Scaleable Elliptic, and Banana to Leech Filters}
     3484}
     3485@article{Giro2004,
     3486  author = {Giro, A. and Bergia, A. and Zuccheri, G. and Bink, H.H.J. and Pleij, C.W.A. and Samori, B.},
     3487  title = {Single Molecule Studies of {RNA} Secondary Structure: {AFM} of {TYMV} Viral {RNA}},
     3488  journal = {Microscopy Research and Technique},
     3489  year = {2004},
     3490  volume = {65},
     3491  number = {4},
     3492  pages = {235-245}
     3493}
     3494@inbook{Vliet1998a,
     3495  author = {Vliet, L.J. van and Sudar, D. and Young, I.T.},
     3496  title = {Cell Biology},
     3497  year = {1998},
     3498  volume = {III},
     3499  pages = {109-120},
     3500  editor = {Celis, J.E.},
     3501  publisher = {Academic Press},
     3502  address = {New York},
     3503  edition = {2nd},
     3504  chapter = {Digital Fluorescence Imaging Using Cooled {CCD} Array Cameras}
     3505}
     3506@unpublished{Vliet1998c,
     3507  author = {Vliet, L.J. van},
     3508  title = {Detection of End-points}
     3509}
     3510@article{Pulokas1999,
     3511  author = {Pulokas, J. and Green, C. and Kisseberth, N. and Potter, C.S. and Carragher, B.},
     3512  title = {Improving the positional accuracy of the goniometer on the {Philips CM} series {TEM}},
     3513  journal = {Journal of Structural Biology},
     3514  year = {1999},
     3515  volume = {128},
     3516  pages = {250-256}
     3517}
     3518@article{Ficz2005,
     3519  author = {Ficz, G. and Heintzmann, R. and Arndt-Jovin, D.J.},
     3520  title = {Polycomb group complexes exchange rapidly in living {Drosophila}},
     3521  journal = {Development},
     3522  year = {2006},
     3523  volume = {132},
     3524  number = {17},
     3525  pages = {3964-3976}
     3526}
     3527@article{Thovert1993,
     3528  author = {Thovert, J.F. and Salles, J. and Adler, P.M.},
     3529  title = {Computerized Characterization of the Geometry of Real Porous Media: their Discretization, Analysis and Interpretation},
     3530  journal = {Journal of Microscopy},
     3531  year = {1993},
     3532  volume = {170, Pt 1},
     3533  pages = {65--79},
     3534  month = {April}
     3535}
     3536@book{Kincaid1991,
     3537  author = {Kincaid,D.},
     3538  title = {Numerical analysis; mathematics of scientific computing},
     3539  year = {1991},
     3540  publisher = {Pacific Grove},
     3541  address = {Brooks/Cole}
     3542}
     3543@article{Netten1994,
     3544  author = {Netten, H. and Vliet, L.J. van and Boddeke, F.R. and Jong, P. de and Young, I.T.},
     3545  title = {A fast scanner for fluorescence microscopy using a {2-D CCD} amd time delayed integration},
     3546  journal = {Bioimaging},
     3547  year = {1994},
     3548  volume = {2},
     3549  pages = {184-192}
     3550}
     3551@article{Loncaric1998,
     3552  author = {Loncaric, S.},
     3553  title = {A Survey of Shape Analysis Techniques},
     3554  journal = {Pattern Recognition},
     3555  year = {1998},
     3556  volume = {31},
     3557  number = {8},
     3558  pages = {983--1001}
     3559}
     3560@article{Malladi1995,
     3561  author = {Malladi, R. and Sethian, J.A. and Vemuri, B.C.},
     3562  title = {Shape Modeling with Front Propagation: A Level Set Approach},
     3563  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     3564  year = {1995},
     3565  volume = {17},
     3566  number = {2},
     3567  pages = {158--175},
     3568  month = {February}
     3569}
     3570@book{Bronstein1999,
     3571  author = {Bronstein, I. N. and Semendjajew, K. A. and Musiol, G. and {M\"uhlig}, H.},
     3572  title = {Taschenbuch der Mathematik},
     3573  year = {1999},
     3574  publisher = {Verlag Harri Deutsch},
     3575  address = {Thun, Frankfurt (Main)},
     3576  edition = {4th}
     3577}
     3578@article{Kundur1996,
     3579  author = {Kundur, D. and Hatzinakos, D.},
     3580  title = {Blind Image Deconvolution},
     3581  journal = {IEEE Signal Processing Magazine},
     3582  year = {1996},
     3583  volume = {13},
     3584  number = {3},
     3585  pages = {43--64},
     3586  month = {May}
     3587}
     3588@article{Levi1970,
     3589  author = {Levi, G. and Montanari, U.},
     3590  title = {A grey-weighted skeleton},
     3591  journal = {Information and Control},
     3592  year = {1970},
     3593  volume = {17},
     3594  number = {1},
     3595  pages = {62-91},
     3596  month = {August}
     3597}
     3598@book{Press1992,
     3599  author = {Press, W.H. and Teukolsky, S.A. and Vetterling, W.T. and Flannery, B.P.},
     3600  title = {Numerical Recipes in C: The Art of Scientific Computing},
     3601  year = {1992},
     3602  publisher = {Cambridge University Press},
     3603  address = {Cambridge},
     3604  edition = {2}
     3605}
     3606@article{Luengo2005,
     3607  author = {Luengo Hendriks, C.L. and Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van},
     3608  title = {The Generalized Radon Transform: Sampling, Accuracy and Memory Considerations},
     3609  journal = {Pattern Recognition},
     3610  year = {2005},
     3611  volume = {38},
     3612  number = {12},
     3613  pages = {2494-2505}
     3614}
     3615@inproceedings{Lambert2000,
     3616  author = {Lambert, P. and Macaire, L.},
     3617  title = {Filtering and Segmentation: the Specificity of Color Images},
     3618  year = {2000},
     3619  booktitle = {International Conference on Color in Graphics and Image Processing CGIP'2000}
     3620}
     3621@article{Rivetti1998,
     3622  author = {Rivetti, C. and Walker, C. and Bustamante, C.},
     3623  title = {Polymer chain statistics and conformational analysis of {DNA} molecules with bends or sections of different flexibility},
     3624  journal = {Journal of Molecular Biology},
     3625  year = {1998},
     3626  volume = {280},
     3627  number = {1},
     3628  pages = {41-59}
     3629}
     3630@inproceedings{Luengo2000,
     3631  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
     3632  title = {Improving resolution to reduce aliasing in an undersampled image sequence},
     3633  year = {2000},
     3634  volume = {3965},
     3635  pages = {2134--222},
     3636  editor = {Blouke, M. M. and Williams, G.M. and Sampat, N. and Yeh, T.},
     3637  series = {Proc. SPIE Electronic Imaging 2000 Conf.},
     3638  address = {San Jose},
     3639  booktitle = {Sensors and Camera Systems for Sensors and Camera Systems for Scientific, Industrial, and Digital Photography Applications}
     3640}
     3641@inproceedings{Luengo2003,
     3642  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
     3643  title = {Basic Morphological Operations, Band-Limited Images and Sampling},
     3644  year = {2003},
     3645  volume = {2695},
     3646  pages = {313-324},
     3647  editor = {Griffin, L.D. and Lillholm, M.},
     3648  publisher = {Springer-Verlag},
     3649  series = {Lecture Notes on Computer Science},
     3650  address = {Berlin},
     3651  booktitle = {Scale Space Methods in Computer Vision, Proceedings of the Fourth International Conference, Scale-Space 2003}
     3652}
     3653@article{Rivetti1996,
     3654  author = {Rivetti, C. and Guthold, M. and Bustamante, C.},
     3655  title = {Scanning Force Microscopy of {DNA} Deposited onto Mica: Equilibration versus Kinetic Trapping Studied by Statistical Polymer Chain Analysis},
     3656  journal = {Journal of Molecular Biology},
     3657  year = {1996},
     3658  volume = {264},
     3659  pages = {919-932}
     3660}
     3661@article{Kroustrup1988,
     3662  author = {Kroustrup, J.P. and Gundersen, H.J.G. and V,h, M.},
     3663  title = {Stereological Analysis of Three-Dimensional Structure Organization of Surfaces in Multiphase Specimens: Statistical Methods and Model-Inferences},
     3664  journal = {Journal of Microscopy},
     3665  year = {1988},
     3666  volume = {149, Pt 2},
     3667  pages = {135--152},
     3668  month = {February}
     3669}
     3670@article{Saxl1993,
     3671  author = {Saxl, I.},
     3672  title = {Contact Distances and Random Free Paths},
     3673  journal = {Journal of Microscopy},
     3674  year = {1993},
     3675  volume = {170, Pt 1},
     3676  pages = {53--64},
     3677  month = {April}
     3678}
     3679@article{Hildreth1984,
     3680  author = {Hildreth, E.C.},
     3681  title = {The computation of the velocity field},
     3682  journal = {Proceedings of the Royal Society of London B},
     3683  year = {1984},
     3684  volume = {221},
     3685  pages = {189-220}
     3686}
     3687@article{Summerscales2001,
     3688  author = {Summerscales, J. and Guild, F.J. and Pearce, N.R.L. and Russell, P.M.},
     3689  title = {Voronoi Cells, Fractal Dimensions and Fibre Composites},
     3690  journal = {Journal of Microscopy},
     3691  year = {2001},
     3692  volume = {201, Pt 2},
     3693  pages = {153--162},
     3694  month = {February}
     3695}
     3696@article{Ruiz2003,
     3697  author = {Ruiz, T. and {Koppenschl\"ager}, G. and Radermacher, M.},
     3698  title = {The 10.8- structure of Saccharomyces cerevisiae phosphofructokinase determined by cryoelectron microscopy: localization of putative fructose 6-phosphate binding sites},
     3699  journal = {Journal of Structural Biology},
     3700  year = {2003},
     3701  volume = {143},
     3702  pages = {124-134}
     3703}
     3704@article{Lagerholm2006,
     3705  author = {Lagerholm, B.C. and Averett, L. and Weinreb, G.E. and Jacobson, K. and Thompson, N.L.},
     3706  title = {Analysis method for measuring submicroscopic distances with blinking Quantum Dots},
     3707  journal = {Biophysical Journal},
     3708  year = {2006},
     3709  volume = {91},
     3710  number = {10},
     3711  pages = {3050-3060}
     3712}
     3713@article{Berney2003,
     3714  author = {Berney, C. and Danuser, G.},
     3715  title = {{FRET} or no {FRET}: A Quantitative Comparison},
     3716  journal = {Biophysical Journal},
     3717  year = {2003},
     3718  volume = {84},
     3719  number = {6},
     3720  pages = {3992-4010}
     3721}
     3722@article{Harrigan1984,
     3723  author = {Harrigan, T.P. and Mann, R.W.},
     3724  title = {Characterization of Microstructural Anisotropy in Orthotropic Materials Using a Second Rank Tensor},
     3725  journal = {Journal of Materials Science},
     3726  year = {1984},
     3727  volume = {19},
     3728  pages = {761--767}
     3729}
     3730@article{Mironov2003,
     3731  author = {Mironov, A.A. and Mironov, A.A.Jr. and Beznoussekno, G.V. and Trucco, A. and Lupetti, P. and Smith, J.D. and Geerts, W.J.C. and Koster, A.J. and Burger, K.N.J. and Martone, M.E. and Deerinck, T.J. and Ellisman, M.H. and Luini, A.},
     3732  title = {{ER-to-Golgi} Carriers Arise through Direct En Bloc Protrusion and Multistage Maturation of Specialized {ER} Exit Domains},
     3733  journal = {Developmental Cell},
     3734  year = {2003},
     3735  volume = {5},
     3736  pages = {583-594}
     3737}
     3738@book{Frankel1997,
     3739  author = {T. Frankel},
     3740  title = {The Geometry of Physics},
     3741  year = {1997},
     3742  publisher = {Cambridge University Press},
     3743  address = {Cambridge}
     3744}
     3745@article{Shaner2005,
     3746  author = {Shaner, N.C. and Steinbach, P.A. and Tsien, R.Y.},
     3747  title = {A guide to choosing fluorescent proteins},
     3748  journal = {Nature Methods},
     3749  year = {2005},
     3750  volume = {2},
     3751  pages = {905-909}
     3752}
     3753@inproceedings{Lozier1994,
     3754  author = {Lozier, D.W. and Olver, F.W.J.},
     3755  title = {Numerical Evaluation of Special Functions},
     3756  year = {1994},
     3757  volume = {48},
     3758  pages = {79--125},
     3759  month = {December},
     3760  editor = {Gautschi, W.},
     3761  series = {Proceedings of Symposia in Applied Mathematics},
     3762  booktitle = {Mathematics of Computation 1943--1993: A Half-Century of Computational Mathematics},
     3763  organization = {American Mathematical Society},
     3764  note = {{\tt http://math.nist.gov/nesf/}}
     3765}
     3766@inbook{Simmonds1982a,
     3767  author = {Simmonds, J.G.},
     3768  title = {A Brief on Tensor Analysis},
     3769  year = {1982},
     3770  publisher = {Spring-Verlag},
     3771  chapter = {1,2}
     3772}
     3773@article{Schoenle2002,
     3774  author = {{Sch\"onle}, A. and Hell, S.W.},
     3775  title = {Calculation of vectorial three-dimensional transfer functions in large angle focusing systems},
     3776  journal = {Journal of the Optical Society of America A},
     3777  year = {2002},
     3778  volume = {19},
     3779  number = {10},
     3780  pages = {2121-2126}
     3781}
     3782@phdthesis{Kempen1999a,
     3783  author = {Kempen, G.M.P. van},
     3784  title = {Image Restoration in Fluorescence Microscopy},
     3785  year = {1999},
     3786  address = {Delft, The Netherlands},
     3787  school = {Delft University of Technology}
     3788}
     3789@article{Min1995,
     3790  author = {Min, G. and Sheppard, C.J.R.},
     3791  title = {Comparison of three-dimensional imaging properties between two-photon and single-photon fluorescence microscopy},
     3792  journal = {Journal of Microscopy},
     3793  year = {1995},
     3794  volume = {177},
     3795  pages = {128--137}
     3796}
     3797@article{Min1990,
     3798  author = {Min, G. and Sheppard, C.J.R.},
     3799  title = {Image formation in two-photon fluorescence microscopy},
     3800  journal = {Optik},
     3801  year = {1990},
     3802  volume = {86},
     3803  pages = {104--106}
     3804}
     3805@phdthesis{Karlholm1998,
     3806  author = {Karlholm, J.},
     3807  title = {Local Signal Models for Image Sequence Analysis},
     3808  year = {1998},
     3809  address = {{Link\"oping}, Sweden},
     3810  school = {{Link\"oping} University}
     3811}
     3812@article{Kimoto2005,
     3813  author = {Kimoto, K. and Kothleitner, G. and Grogger, W. and Matsui, Y. and Hofer, F.},
     3814  title = {Advantages of a monochromator for bandgap measurements using electron energy-loss spectroscopy},
     3815  journal = {Micron},
     3816  year = {2005},
     3817  volume = {36},
     3818  pages = {185-189}
     3819}
     3820@book{Mallat2001,
     3821  author = {Mallat, S.G.},
     3822  title = {A wavelet tour of signal processing},
     3823  year = {1999},
     3824  publisher = {John Wiley \& Sons},
     3825  address = {New York},
     3826  edition = {2nd edition}
     3827}
     3828@book{Walter1994,
     3829  author = {Walter, W.},
     3830  title = {{Einf\"uhrung in die Theorie der Distributionen}},
     3831  year = {1994},
     3832  publisher = {Spektrum Akademischer Verlag},
     3833  edition = {3}
     3834}
     3835@misc{GinkelWWWqqnvphbv2001,
     3836  title = {http://www.ph.tn.tudelft.nl/\char126michael/qqnvphnv.html},
     3837  key = {ZZZZ}
     3838}
     3839@article{Cucchiara1998,
     3840  author = {Cucchiara, R. and Filicori, F.},
     3841  title = {The Vector-Gradient Hough Transform},
     3842  journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
     3843  year = {1998},
     3844  volume = {20},
     3845  number = {7},
     3846  pages = {746--750},
     3847  month = {July},
     3848  annote = {key_radon}
     3849}
     3850@inproceedings{Mullikien1994,
     3851  author = {Mullikien, J.C. and Vliet, L.J. van and Netten, H. and Boddeke, F.R. and Feltz, G.W. van der and Young, I.T.},
     3852  title = {Methods for {CCD} camera characterization},
     3853  year = {1994},
     3854  volume = {2173},
     3855  pages = {73-84},
     3856  month = {February 9-10},
     3857  editor = {Titus, H.C. and Waks, A.},
     3858  address = {San Jose, CA},
     3859  booktitle = {SPIE Proceedings}
     3860}
     3861@techreport{Verbeek1982,
     3862  author = {Verbeek, P.W.},
     3863  title = {Space Invariant Image Operations Constructed from Local Direction Detection and Shift Invariant Filters},
     3864  year = {1982},
     3865  address = {Pattern Recognition Group},
     3866  institution = {Delft University of Technology}
     3867}
     3868@inproceedings{Verbeek1986,
     3869  author = {Verbeek, P.W. and Dorst, L. and Verwer, B.J.H. and Groen, F.C.A.},
     3870  title = {Collision Avoidance and Path Finding through Constrained Distance Transformation in Robot State Space},
     3871  year = {1986},
     3872  pages = {634--641},
     3873  booktitle = {Preprints Intelligent Autonomous Systems (Amsterdam, December 8-11)}
     3874}
     3875@article{Verbeek1985,
     3876  author = {Verbeek, P.W.},
     3877  title = {A Class of Sampling-error Free Measures in Oversampled Band-Limited Images},
     3878  journal = {Pattern Recognition Letters},
     3879  year = {1985},
     3880  volume = {3},
     3881  pages = {287--292}
     3882}
     3883@article{Verbeek1988,
     3884  author = {Verbeek, P.W. and Vrooman, H.A. and Vliet, L.J. van},
     3885  title = {Low-level Image Processing by Max-Min Filters},
     3886  journal = {Signal Processing},
     3887  year = {1988},
     3888  volume = {15},
     3889  number = {3},
     3890  pages = {249--258}
     3891}
     3892@techreport{Verbeek2000,
     3893  author = {Verbeek, P.W.},
     3894  title = {Subspaces of Generalised Projection Operators},
     3895  year = {2000},
     3896  address = {Pattern Recognition Group},
     3897  institution = {Delft University of Technology}
     3898}
     3899@inproceedings{Verbeek2003,
     3900  author = {Verbeek, P.W. and Dijk, J.},
     3901  title = {The {D}-dimensional inverse vector-gradient operator and its application for scale free image enhancement},
     3902  year = {2003},
     3903  pages = {738-745},
     3904  month = {August 25-27},
     3905  editor = {Petkov, N. and Westenberg, M.A.},
     3906  publisher = {Springer},
     3907  series = {LNCS 2756},
     3908  address = {Berlin},
     3909  booktitle = {10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands) }
     3910}
     3911@article{Verbeek1989,
     3912  author = {Verbeek, P.W. and Verwer, B.J.H.},
     3913  title = {{2-D} Adaptive Smoothing by {3-D} Distance Transformation},
     3914  journal = {Pattern Recognition Letters},
     3915  year = {1989},
     3916  volume = {9},
     3917  pages = {53--65}
     3918}
     3919@article{Manders1996,
     3920  author = {Manders, E.M.M. and Hoebe, R. and Strackee, J. and Vossepoel, A.M. and Aten, J.A.},
     3921  title = {Largest contour segmentation: A tool for the localization of spots in confocal images},
     3922  journal = {Cytometry Part A},
     3923  year = {1996},
     3924  volume = {23},
     3925  number = {1},
     3926  pages = {15-21}
     3927}
     3928@phdthesis{Boomgaard1992,
     3929  author = {Boomgaard, R. van den},
     3930  title = {Mathematical Morphology: Extensions Towards Computer Vision},
     3931  year = {1992},
     3932  address = {Amsterdam},
     3933  school = {University of Amsterdam}
     3934}
     3935@article{Boomgaard1999,
     3936  author = {Boomgaard, R. van den},
     3937  title = {Affine invariant deformation curves a tool for shape characterization},
     3938  journal = {Image and Vision Computing},
     3939  year = {1999},
     3940  volume = {17},
     3941  pages = {375--380}
     3942}
     3943@article{Bos1992,
     3944  author = {Bos, A. van den},
     3945  title = {Ultimate resolution: a mathematical framework},
     3946  journal = {Ultramicroscopy},
     3947  year = {1992},
     3948  volume = {47},
     3949  number = {1},
     3950  pages = {298-306}
     3951}
     3952@article{Boomgaard1994,
     3953  author = {Boomgaard, R. van den and Smeulders, A.},
     3954  title = {The morphological structure of images: The differential equations of morphological scale-space},
     3955  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     3956  year = {1994},
     3957  volume = {16},
     3958  number = {11},
     3959  pages = {1101--1113}
     3960}
     3961@article{Manders1993,
     3962  author = {Manders, E.M.M. and Verbeek, F.J. and Aten, J.A.},
     3963  title = {Measurement of co-localization of objects in dual-colour confocal images},
     3964  journal = {Journal of Microscopy},
     3965  year = {1993},
     3966  volume = {169},
     3967  number = {3},
     3968  pages = {375-382}
     3969}
     3970@misc{Dijkstra1982,
     3971  author = {Dijkstra, E.W.},
     3972  title = {Why Numbering Should Start at Zero},
     3973  year = {1982},
     3974  month = {August 11},
     3975  howpublished = {PDF file}
     3976}
     3977@misc{DelftXXXX,
     3978  author = {Delft, P. van and Botermans,J.},
     3979  title = {Magische Vierkanten},
     3980  howpublished = {uit ``Spelen met Puzzels''}
     3981}
     3982@article{Mayall1990,
     3983  author = {Mayall, B.H. and Tucker, J.D. and Christensen, M.L. and Vliet, L.J. van and Young, I.T.},
     3984  title = {Experience with the {Athena} Semi-Automated Karyotyping System},
     3985  journal = {Cytometry},
     3986  year = {1990},
     3987  volume = {11},
     3988  number = {1},
     3989  pages = {59--72}
     3990}
     3991@article{Schoenberg1930,
     3992  author = {Schoenberg, I.},
     3993  title = {{\"Uber} Variationsvermindernde Lineare Transformationen},
     3994  journal = {Mathematische Zeitschrift},
     3995  year = {1930},
     3996  volume = {32},
     3997  pages = {321--328}
     3998}
     3999@book{Rade1999,
     4000  author = {{R\aa de}, L. and Westergren, B.},
     4001  title = {Mathematical Handbook for Science and Engineering},
     4002  year = {1999},
     4003  publisher = {Springer Verlag},
     4004  edition = {4th}
     4005}
     4006@article{Blostein1989,
     4007  author = {Blostein, D. and Ahuja, N.},
     4008  title = {Shape from Texture: Integrating Texture-Element Extraction and Surface Estimation},
     4009  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4010  year = {1989},
     4011  volume = {11},
     4012  number = {12},
     4013  pages = {1233--1251},
     4014  month = {December}
     4015}
     4016@inproceedings{Hartley1992,
     4017  author = {Hartley, R. and Gupta, R. and Chang, T.},
     4018  title = {Stereo from Uncalibrated Cameras},
     4019  year = {1992},
     4020  pages = {761--764},
     4021  month = {15--18 June},
     4022  address = {Urbana-Champaign, USA},
     4023  booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition - CVPR'92}
     4024}
     4025@article{Patwardhan2002,
     4026  author = {Patwardhan, A.},
     4027  title = {Coherent, non-planar illumination of a defocused specimen: consequences for transmission electron microscopy},
     4028  journal = {Optik},
     4029  year = {2002},
     4030  volume = {13},
     4031  number = {1},
     4032  pages = {4-12}
     4033}
     4034@article{Kybic2002a,
     4035  author = {Kybic, J. and Blu, T. and Unser, M.},
     4036  title = {Generalized sampling: A variational approach - Part {II}: Applications},
     4037  journal = {IEEE Transactions on Signal Processing},
     4038  year = {2002},
     4039  volume = {50},
     4040  number = {8},
     4041  pages = {1977--1985}
     4042}
     4043@inproceedings{Cooper2003,
     4044  author = {Cooper, D.H. and Madsen, B.R. and Graham, J.},
     4045  title = {Estimating Motion in Ultrasound Images of the Small Bowel: Optical Flow without Image Structure},
     4046  year = {2003},
     4047  pages = {571-578},
     4048  month = {June 29 -July 2},
     4049  editor = {{Big\"un}, J. and Gustavsson, T.},
     4050  publisher = {Springer-Verlag},
     4051  series = {LNCS 2749},
     4052  address = {Berlin},
     4053  booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) }
     4054}
     4055@article{Weijer2001,
     4056  author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van},
     4057  title = {Curvature estimation in oriented patterns using curvilinear models applied to gradient vector fields},
     4058  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4059  year = {2001},
     4060  volume = {23},
     4061  number = {9},
     4062  pages = {1035 -1042}
     4063}
     4064@article{Weijer2005,
     4065  author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van },
     4066  title = {Edge and Corner Detection by Photometric Quasi-Invariants},
     4067  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4068  year = {2005},
     4069  volume = {27},
     4070  number = {4},
     4071  pages = {625-630}
     4072}
     4073@article{Unsalan2001,
     4074  author = {{\"Unsalan}, C. and {Er\c{c}il}, A.},
     4075  title = {Conversions between Parametric and Implicit Forms Using Polar/Spherical Coordinate Representations},
     4076  journal = {Computer Vision and Image Understanding},
     4077  year = {2001},
     4078  volume = {81},
     4079  number = {1},
     4080  pages = {1--25}
     4081}
     4082@article{Aguado2000a,
     4083  author = {Aguado, A.S. and Montiel, E. and Nixon, M.S.},
     4084  title = {On the Intimate Relationship between the Principle of Duality and the {Hough} Transform},
     4085  journal = {Proceedings of the Royal Society London A},
     4086  year = {2000},
     4087  volume = {456},
     4088  number = {1995},
     4089  pages = {503--526}
     4090}
     4091@article{Unser1999,
     4092  author = {Unser, Michael},
     4093  title = {Splines: A Perfect Fit for Signal and Image Processing},
     4094  journal = {IEEE Signal Processing Magazine},
     4095  year = {1999},
     4096  pages = {22--38},
     4097  month = {November}
     4098}
     4099@article{Haussecker2001,
     4100  author = {Haussecker, H.W. and Fleet, D.J.},
     4101  title = {Computing Optical Flow with Physical Models of Brightness Variation},
     4102  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4103  year = {2001},
     4104  volume = {23},
     4105  number = {6},
     4106  pages = {661--673},
     4107  month = {June}
     4108}
     4109@article{Unser1995,
     4110  author = {Unser, M. and Thevenaz, P. and Yaroslavsky, L.},
     4111  title = {Convolution-based interpolation for fast, high-quality rotation of images},
     4112  journal = {IEEE Transactions on Image Processing},
     4113  year = {1995},
     4114  volume = {4},
     4115  number = {10},
     4116  pages = {1371-1381}
     4117}
     4118@article{Duncan1991,
     4119  author = {Duncan, J.S. and Lee, F.A. and Smeulders, A.W.M. and Zaret, B.L.},
     4120  title = {A bending energy model for measurement of cardiac shape deformaty},
     4121  journal = {IEEE Transactions on Medical Imaging},
     4122  year = {1991},
     4123  volume = {10},
     4124  number = {3},
     4125  pages = {307--319}
     4126}
     4127@article{Unser1991,
     4128  author = {Unser, M. and Aldroubi, A. and Eden, M.},
     4129  title = {Fast {B}-Spline Transform for Continuous Image Representation and Interpolation},
     4130  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4131  year = {1991},
     4132  volume = {13},
     4133  number = {3},
     4134  pages = {277--285},
     4135  month = {March}
     4136}
     4137@article{Whitaker1993,
     4138  author = {Whitaker, R.T. and Pizer, S.M.},
     4139  title = {A Multi-Scale Approach to Nonuniform Diffusion},
     4140  journal = {CVGIP Image Understanding},
     4141  year = {1993},
     4142  volume = {57},
     4143  number = {1},
     4144  pages = {99--110},
     4145  month = {January}
     4146}
     4147@article{Unser1993,
     4148  author = {Unser, Michael and Aldroubi, Akram and Eden, Murray},
     4149  title = {{B}-Spline Signal Processing: Part {I} - Theory},
     4150  journal = {IEEE Transactions on Signal Processing},
     4151  year = {1993},
     4152  volume = {41},
     4153  number = {2},
     4154  pages = {821--833},
     4155  month = {February}
     4156}
     4157@article{Vries2004,
     4158  author = {Vries, A.H.B. de and Kanger, J.S. and Krenn, B.E. and Driel, R. van},
     4159  title = {Patterned Electroplating of Micrometer Scale Magnetic Structures on Glass Substrates},
     4160  journal = {Journal of Microelectromechanical Systems},
     4161  year = {2004},
     4162  volume = {13},
     4163  number = {4},
     4164  pages = {391-395}
     4165}
     4166@article{Vries2005,
     4167  author = {Vries, A.H.B. de and Krenn, B.E. and Driel, R. van and Kanger, J.S.},
     4168  title = {Micro Magnetic Tweezers for Nanomanipulation Inside Live Cells},
     4169  journal = {Biophysical Journal},
     4170  year = {2005},
     4171  volume = {88},
     4172  number = {3},
     4173  pages = {2137-2144}
     4174}
     4175@article{Weijer2001kort,
     4176  author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van },
     4177  title = {Curvature estimation in oriented patterns using curvilinear models applied to gradient vector fields },
     4178  journal = {PAMI},
     4179  year = {2001},
     4180  volume = {23},
     4181  number = {9},
     4182  pages = {1035--1042}
     4183}
     4184@misc{DIPlib,
     4185  author = {Ginkel, M. van and Kempen, G.M.P. van and Luengo Hendriks, C.L. and Rieger, B. and Vliet, L.J. van},
     4186  title = {{DIPlib}: a scientific image processing library},
     4187  year = {1995-},
     4188  note = {Pattern Recognition Group, Department of Applied Physics, Delft University of Technology, {\tt http://www.qi.tnw.tudelft.nl/DIPlib}}
     4189}
     4190@article{Michielsen2000,
     4191  author = {Michielsen, K. and De Raedt, H.},
     4192  title = {Morphological Image Analysis},
     4193  journal = {Computer Physics Communications},
     4194  year = {2000},
     4195  volume = {132},
     4196  pages = {94--103}
     4197}
     4198@article{Heertje1997,
     4199  author = {Heertje, I.},
     4200  title = {Vet Zonder Vet},
     4201  journal = {Natuur en Techniek},
     4202  year = {1997},
     4203  volume = {65},
     4204  number = {2},
     4205  pages = {30--40}
     4206}
     4207@inproceedings{Tomasi1998a,
     4208  author = {Tomasi, C. and Manduchi, R.},
     4209  title = {Bilateral Filtering for Gray and Color Images},
     4210  year = {1988},
     4211  pages = {836-846},
     4212  month = {January 4-7},
     4213  publisher = {Narosa Publishing House},
     4214  booktitle = { Proceedings of the Sixth International Conference on Computer Vision, ICCV'98 (Bombay, India)}
     4215}
     4216@book{Jain1989,
     4217  author = {Jain, A.K.},
     4218  title = {Fundamentals of Digital Image Processing},
     4219  year = {1989},
     4220  publisher = {Prentice-Hall}
     4221}
     4222@article{Thompson2002,
     4223  author = {Thompson, R.E. and Larson, D.R. and Webb, W.W.},
     4224  title = {Precise Nanometer Localization Analysis for Individual Fluorescent Probes},
     4225  journal = {Biophysical Journal},
     4226  year = {2002},
     4227  volume = {82},
     4228  pages = {2775-2783}
     4229}
     4230@techreport{Pizer1990,
     4231  author = {Pizer, S.M. and Cullip, T.J. and Fredericksen, R.E.},
     4232  title = {Toward Interactive Object Definition in 3D Scalar Images},
     4233  year = {1990},
     4234  institution = {University of North Carolina, U.S.A.},
     4235  note = {TR90-034}
     4236}
     4237@article{Taton2001,
     4238  author = {Taton, T.A. and Mirkin, C.A. and Lestinger, R.L.},
     4239  title = {Two-color labeling of oligonucleotide arrays via size-selctive scattering of nanoparticles},
     4240  journal = {Journal of the American Chemical Society},
     4241  year = {2001},
     4242  volume = {123},
     4243  pages = {5164-5165}
     4244}
     4245@article{Orr1993,
     4246  author = {Orr, R.S.},
     4247  title = {The Order of Computation for Finite Discrete Gabor Transforms},
     4248  journal = {IEEE Transactions on Signal Processing},
     4249  year = {1993},
     4250  volume = {41},
     4251  number = {1},
     4252  pages = {122--130},
     4253  month = {January}
     4254}
     4255@article{Marfurt1998,
     4256  author = {Marfurt, K.J. and Kirlin, R.L. and Farmer, S.L. and Bahorich, M.S.},
     4257  title = {3-D Seismic Attributes using a Semblance-based coherency algorithm},
     4258  journal = {Geophysics},
     4259  year = {1998},
     4260  volume = {63},
     4261  number = {4},
     4262  pages = {1150--1165},
     4263  month = {July-August}
     4264}
     4265@inproceedings{Witkin1983,
     4266  author = {Witkin, A.},
     4267  title = {Scale Space Filtering},
     4268  year = {1983},
     4269  pages = {1019--1023},
     4270  month = {October},
     4271  address = {Karlsruhe, Germany},
     4272  booktitle = {Proceedings of the International Conference on Artificial Intelligence}
     4273}
     4274@article{Doel2001,
     4275  author = {Doel, L.R. van den and Vliet, L.J. van},
     4276  title = {Temporal phase unwrapping algorithm for dynamic interference pattern analysis in interference-contrast microscopy},
     4277  journal = {Applied Optics},
     4278  year = {2001},
     4279  volume = {40},
     4280  number = {25},
     4281  pages = {4487--4500}
     4282}
     4283@inproceedings{Zucker1999,
     4284  author = {Zucker, S.W.},
     4285  title = {Complexity and Confusion in Computational Vision},
     4286  year = {1999},
     4287  pages = {1--10},
     4288  month = {June 7-11},
     4289  booktitle = {SCIA'99 the 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland)}
     4290}
     4291@article{HelOr1998,
     4292  author = {Hel-Or, Y. and Teo, P.C.},
     4293  title = {Canonical Decomposition of Steerable Functions},
     4294  journal = {Journal of Mathematical Imaging and Vision},
     4295  year = {1998},
     4296  volume = {9},
     4297  pages = {83--95}
     4298}
     4299@phdthesis{Doel2002,
     4300  author = {Doel, L.R. van den},
     4301  title = {Quantitative Microscopic Techniques for Monitoring Dynamic Processes in Microarrays},
     4302  year = {2002},
     4303  address = {Delft, The Netherlands},
     4304  school = {Delft University of Technology}
     4305}
     4306@article{Fredrich1997,
     4307  author = {Fredrich, J.T. and Lindquist, W.B.},
     4308  title = {Statistical Characterization of the Three-dimensional Microgeometry of Porous Media and Correlation with Macroscopic Transport Properties},
     4309  journal = {Int. J. Roch Mech. \& Min. Sci.},
     4310  year = {1997},
     4311  volume = {34},
     4312  number = {3-4},
     4313  pages = {Paper No. 85}
     4314}
     4315@article{Fredrich1999,
     4316  author = {Fredrich, J.T.},
     4317  title = {3D Imaging of Porous Media using Laser Scanning Confocal Microscopy with Application to Microscale Transport Processes},
     4318  journal = {Physics and Chemistry of the Earth (A)},
     4319  year = {1999},
     4320  volume = {24},
     4321  number = {7},
     4322  pages = {551--561}
     4323}
     4324@book{Duda2001,
     4325  author = {Duda, R.O. and Hart, P.E. and Stork, D.G.},
     4326  title = {Pattern Classification},
     4327  year = {2001},
     4328  publisher = {John Wiley \& Sons},
     4329  edition = {second}
     4330}
     4331@article{Fredrich1995,
     4332  author = {Fredrich, J.T. and {Men\'endez}, B. and Wong, T.F.},
     4333  title = {Imaging the Pore Structure of Geomaterials},
     4334  journal = {Science},
     4335  year = {1995},
     4336  volume = {268},
     4337  pages = {276--279},
     4338  month = {April}
     4339}
     4340@article{Whitehouse1974a,
     4341  author = {Whitehouse, W.J. and Dyson, E.D.},
     4342  title = {Scanning Electron Microscope Studies of Trabecular Bone in the Proximal End of the Human Femur},
     4343  journal = {J. Anatomy},
     4344  year = {1974},
     4345  volume = {118},
     4346  pages = {417--444}
     4347}
     4348@inproceedings{Beucher1982,
     4349  author = {Beucher, S.},
     4350  title = {Watersheds of Functions and Picture Segmentation},
     4351  year = {1982},
     4352  pages = {1928-1931},
     4353  booktitle = {IEEE International Conference on Acoustics, Speech, and Signal Processing}
     4354}
     4355@article{Booth2000,
     4356  author = {Booth, M.J. and Wilson, T.},
     4357  title = {Strategies for the compensation of specimen-induced spherical aberration in confocal microscopy of skin},
     4358  journal = {Journal of Microscopy},
     4359  year = {2000},
     4360  volume = {200},
     4361  number = {1},
     4362  pages = {68-74}
     4363}
     4364@article{Redon1998,
     4365  author = {Redon, C. and Chermant, L. and Chermant, J.-L. and Coster, M.},
     4366  title = {Assessment of Fibre Orientation in Reinforced Concrete using {Fourier} Image Transform},
     4367  journal = {Journal of Microscopy},
     4368  year = {1998},
     4369  volume = {191 Pt 3},
     4370  pages = {258--265},
     4371  month = {September}
     4372}
     4373@article{Booth2004,
     4374  author = {Booth, C.R. and Jiang, W. and Baker, M.L. and Zhou, Z.H. and Ludtke, S.J. and Chiu, W.},
     4375  title = {A 9 single particle reconstruction from {CCD} captured images on a 200 {kV} electron cryomicroscope},
     4376  journal = {Journal of Structural Biology},
     4377  year = {2004},
     4378  volume = {147},
     4379  pages = {116-127}
     4380}
     4381@article{Booth2002,
     4382  author = {Booth, M.J. and Neil, M.A.A. and Juskaitis, R. and Wilson, T.},
     4383  title = {Adaptive aberration correction in a confocal microscope},
     4384  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     4385  year = {2002},
     4386  volume = {99},
     4387  number = {9},
     4388  pages = {5788-5792}
     4389}
     4390@article{Jakobsen2000,
     4391  author = {Jakobsen, M. and Johansen, T.A.},
     4392  title = {Anisotropic approximations for mudrocks: a seismic laboratory study},
     4393  journal = {Geophysics},
     4394  year = {2000},
     4395  volume = {65},
     4396  number = {6},
     4397  pages = {1711--1725},
     4398  month = {November/December}
     4399}
     4400@article{Kiryati1991a,
     4401  author = {Kiryati, N. and Bruckstein, A.M.},
     4402  title = {On Navigating between Friends and Foes},
     4403  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4404  year = {1991},
     4405  volume = {13},
     4406  number = {6},
     4407  pages = {602--606},
     4408  month = {June},
     4409  annote = {key_radon}
     4410}
     4411@article{Gustafsson1999,
     4412  author = {Gustafsson, M.G.L. and Agard, D.A. and Sedat, J.W.},
     4413  title = {{I$^5$M}: {3D} widefield light microscopy with better than 100 nm axial resolution},
     4414  journal = {Journal of Microscopy},
     4415  year = {1999},
     4416  volume = {195},
     4417  number = {1},
     4418  pages = {10-16}
     4419}
     4420@book{Lovell1999,
     4421  author = {Lovell, M. and Williamson, G. and Harvey, P.},
     4422  title = {Borehole imaging: Applications and case histories, Geological Society special publication, no. 159},
     4423  year = {1999},
     4424  publisher = {Geological Society, London}
     4425}
     4426@article{Faydi2001a,
     4427  author = {Faydi, E. and Andrieu, J. and Laurent, P. and Peczalski, R.},
     4428  title = {Experimental Study and Modeling of the Ice Crystal Morphology of Model Standard Ice Cream. Part {II}: Heat Transfer Data and Texture Modeling},
     4429  journal = {Journal of Food Engineering},
     4430  year = {2001},
     4431  volume = {48},
     4432  pages = {293--300}
     4433}
     4434@article{Kitchen1982,
     4435  author = {Kitchen, L. and Rosenfeld, A.},
     4436  title = {Gray-Level Corner Detection},
     4437  journal = {Pattern Recognition Letters},
     4438  year = {1982},
     4439  volume = {1},
     4440  number = {2},
     4441  pages = {95--102}
     4442}
     4443@inbook{Digabel1978,
     4444  author = {Digabel, H. and {Lantu\'ejoul}, C.},
     4445  title = {Quantitative Analysis of Microstructures in Materials Sciences, Biology and Medicine},
     4446  year = {1978},
     4447  pages = {85-99},
     4448  editor = {Chermant, J. L.},
     4449  publisher = {Dr. Rieder-Verlag},
     4450  address = {Stuttgart},
     4451  chapter = {Iterative Algorithms}
     4452}
     4453@article{Leung2000,
     4454  author = {Leung, Y. and Zhang, J.S. and Xu, Z.B.},
     4455  title = {Clustering by Scale-space Filtering},
     4456  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4457  year = {2000},
     4458  volume = {22},
     4459  number = {12},
     4460  pages = {1396--1410},
     4461  month = {December}
     4462}
     4463@article{Tomasi1998,
     4464  author = {Tomasi, C. and Manduchi, R.},
     4465  title = {Stereo Matching as a Nearest-Neighbor Problem},
     4466  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4467  year = {1998},
     4468  volume = {20},
     4469  number = {3},
     4470  pages = {333--340},
     4471  month = {March}
     4472}
     4473@article{Shi1996,
     4474  author = {Shi, Y. and He, S. and Hearst, J.E.},
     4475  title = {Statistical mechanics of the extensible and shearable elastic rod and of {DNA}},
     4476  journal = {The Journal of Chemical Physics},
     4477  year = {1996},
     4478  volume = {105},
     4479  number = {2},
     4480  pages = {714-731}
     4481}
     4482@article{Schwertner2004,
     4483  author = {Schwertner, M. and Booth, M.J. and Wilson, T.},
     4484  title = {Characterizing specimen induced aberrations for high NA adaptive optical microscopy},
     4485  journal = {Optics Express},
     4486  year = {2004},
     4487  volume = {12},
     4488  number = {26},
     4489  pages = {6540-6552}
     4490}
     4491@article{Ville1948,
     4492  author = {Ville, J.},
     4493  title = {{Th\'eorie} et Applications de la Notion de Signal Analytique},
     4494  journal = {Cables et Transmission},
     4495  year = {1948},
     4496  volume = {{2A}},
     4497  number = {1},
     4498  pages = {61--74}
     4499}
     4500@article{Good1958,
     4501  author = {Good, I.J.},
     4502  title = {The Interaction Algorithm and Practical {Fourier} Analysis},
     4503  journal = {J. Roy. Statist. Soc. Ser. B},
     4504  year = {1958},
     4505  volume = {B. 20},
     4506  pages = {361--372},
     4507  note = {Addendum in vol B. 22, 1960, pp. 372-375},
     4508  annote = {key_fft}
     4509}
     4510@article{Digman2005a,
     4511  author = {Digman, M.A. and Brown, C.M. and Sengupta, P. and Wiseman, P.W. and Howritz, A.R. and Grattown, E.},
     4512  title = {Measuring Fast Dynamics in Solutions and Cells with a Laser Scanning Microscope},
     4513  journal = {Biophysical Journal},
     4514  year = {2005},
     4515  volume = {89},
     4516  pages = {1317-1327}
     4517}
     4518@article{Kiryati1992,
     4519  author = {Kiryati, N. and Bruckstein, A.M.},
     4520  title = {What 's in a Set of Points?},
     4521  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4522  year = {1992},
     4523  volume = {14},
     4524  number = {4},
     4525  pages = {496--500},
     4526  month = {April},
     4527  annote = {key_radon}
     4528}
     4529@inbook{Rosenfeld1969_Hough,
     4530  author = {Rosenfeld, A.},
     4531  title = {Picture Processing by Computer},
     4532  year = {1969},
     4533  pages = {151--153},
     4534  publisher = {Academic Press},
     4535  chapter = {8. Picture Segmentation},
     4536  note = {Section 8.4.e. Coordinate Conversion}
     4537}
     4538@article{Kiryati1991,
     4539  author = {Kiryati, N. and Bruckstein, A.M.},
     4540  title = {Antialiasing the {H}ough transform},
     4541  journal = {CVGIP: Graphical Models and Image Processing},
     4542  year = {1991},
     4543  volume = {53},
     4544  number = {3},
     4545  pages = {213--222},
     4546  month = {May},
     4547  annote = {key_radon}
     4548}
     4549@article{Randen1999,
     4550  author = {Randen, T. and {Hus\oe y}, H.},
     4551  title = {Filtering for Texture Classification: A Comparative Study},
     4552  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4553  year = {1999},
     4554  volume = {21},
     4555  number = {4},
     4556  pages = {291--310},
     4557  month = {April}
     4558}
     4559@article{Birk1979,
     4560  author = {Birk, J. and Kelley, R. and Chen, N. and Wilson, L.},
     4561  title = {Image Feature Extraction Using Diameter-Limited Gradient Direction Histograms},
     4562  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4563  year = {1979},
     4564  volume = {1},
     4565  number = {2},
     4566  pages = {228--235},
     4567  month = {April}
     4568}
     4569@article{Betzig2006,
     4570  author = {Betzig, E. and Patterson, G.H. and Sougrat, R. and Lindwasser, O.W. and Olenych, S. and Bonifacino, J.S. and Davidson, M.W. and Lippincott-Schwartz, J. and Hess, H.F.},
     4571  title = {Imaging Intracellular Fluorescent Proteins at Nanometer Resolution},
     4572  journal = {Science},
     4573  year = {2006},
     4574  volume = {313},
     4575  pages = {1643-1645}
     4576}
     4577@article{Lopez2000,
     4578  author = {{L\'opez}, A.M. and Lloret, D. and Serrat, J. and Villanueva, J.J.},
     4579  title = {Multilocal Creaseness Based on the Level-Set Extrinsic Curvature},
     4580  journal = {Computer Vision and Image Understanding},
     4581  year = {2000},
     4582  volume = {77},
     4583  pages = {111--144}
     4584}
     4585@book{Stoker1969,
     4586  author = {Stoker, J.J.},
     4587  title = {Differential Geometry},
     4588  year = {1969},
     4589  publisher = {John Wiley and Sons, Inc}
     4590}
     4591@article{Robinson2004a,
     4592  author = {Robinson, M.D. and Milanfar, P.},
     4593  title = {Fundamental performance limits in image registration},
     4594  journal = {IEEE Transactions on Image Processing},
     4595  year = {2004},
     4596  volume = {13},
     4597  number = {9},
     4598  pages = {1185-1199}
     4599}
     4600@article{Frontali1988,
     4601  author = {Frontali, C.},
     4602  title = {Excluded-volume effect on the bidimensional conformation of {DNA} molecules adsorbed to protein films},
     4603  journal = {Biopolymers},
     4604  year = {1988},
     4605  volume = {27},
     4606  number = {8},
     4607  pages = {1329-1331}
     4608}
     4609@article{Veen1981,
     4610  author = {Veen, T.M. van and Groen, F.C.A.},
     4611  title = {Discretization Error in the {H}ough transform},
     4612  journal = {Pattern Recognition},
     4613  year = {1981},
     4614  volume = {14},
     4615  pages = {137--145},
     4616  annote = {key_radon}
     4617}
     4618@article{Eberly1991a,
     4619  author = {Eberly, D. and Lancaster, J. and Alyassin, A.},
     4620  title = {On Gray Scale Image Measurements. {II}. Surface Area and Volume},
     4621  journal = {CVGIP: Graphical Models and Image Processing},
     4622  year = {1991},
     4623  volume = {53},
     4624  number = {6},
     4625  pages = {550--562},
     4626  month = {November}
     4627}
     4628@article{Stowell1998,
     4629  author = {Stowell, M.H.B. and Miyazawa, A. and Unwin, N.},
     4630  title = {Macromolecular structure determination by electron microscopy: new advances and recent results},
     4631  journal = {Current Opinion Structural Biology},
     4632  year = {1998},
     4633  volume = {8},
     4634  pages = {595-600}
     4635}
     4636@article{Yang1997,
     4637  author = {Yang, L. and Albregtsen, F. and Taxt, T.},
     4638  title = {Fast Computation of Three-Dimensional Geometric Moments Using a Discrete Divergence Theorem and a Generalization to Higher Dimensions},
     4639  journal = {Graphical Models and Image Processing},
     4640  year = {1997},
     4641  volume = {59},
     4642  number = {2},
     4643  pages = {97--108},
     4644  month = {March}
     4645}
     4646@article{Jovin2003,
     4647  author = {Jovin, T.M.},
     4648  title = {Quantum dots finally come of age},
     4649  journal = {Nature Biotechnology},
     4650  year = {2003},
     4651  volume = {21},
     4652  pages = {32-33}
     4653}
     4654@article{Ioannidis2000,
     4655  author = {Ioannidis, M.A. and Chatzis, I.},
     4656  title = {On the Geometry and Topology of 3D Stochastic Porous Media},
     4657  journal = {Journal of Colloid and Interface Science},
     4658  year = {2000},
     4659  volume = {229},
     4660  pages = {323--334}
     4661}
     4662@article{Srinivasa1996,
     4663  author = {Srinivasa Reddy, B. and Chatterji, B.N.},
     4664  title = {A FFT-based technique for translation, rotation and scale-invariant image registration},
     4665  journal = {IEEE Transactions on Image Processing},
     4666  year = {1996},
     4667  volume = {5},
     4668  number = {8},
     4669  pages = {1266-1271}
     4670}
     4671@article{Zheng1995,
     4672  author = {Zheng, Q. and Chellappa, R.},
     4673  title = {Automatic feature point extraction and tracking in image sequences for arbitrary camera motion},
     4674  journal = {International Journal of Computer Vision},
     4675  year = {1995},
     4676  volume = {15},
     4677  pages = {31--76}
     4678}
     4679@article{Mattfeldt1993,
     4680  author = {Mattfeldt, T. and Frey, H. and Rose, C.},
     4681  title = {Second-order Stereology of Benign and Malignant Alterations of the Human Mammary Gland},
     4682  journal = {Journal of Microscopy},
     4683  year = {1993},
     4684  volume = {171, Pr 2},
     4685  pages = {143--151},
     4686  month = {August}
     4687}
     4688@book{Campbell2001a,
     4689  title = {Exploring the Nanoworld with {LEGO} bricks},
     4690  year = {2001},
     4691  editor = {Campbell, D.J.}
     4692}
     4693@article{Murk2003,
     4694  author = {Murk, J.L.A.N. and Humbel, B.M. and Ziese, U. and Griffith, J.M. and Posthuma, G. and Slot, J.W. and Koster, A.J. and Verkleij, A.J. and Geuze, H.J. and Kleijmeer, M.J.},
     4695  title = {Endosomal compartmentalization in three dimensions: Implications for membrane fusion},
     4696  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     4697  year = {2003},
     4698  volume = {100},
     4699  number = {23},
     4700  pages = {13332-13337}
     4701}
     4702@article{Chiuso2002,
     4703  author = {Chiuso, A. and Favaro, P. and Hailin Jin and Soatto, S. },
     4704  title = {Structure from motion causally integrated over time},
     4705  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4706  year = {2002},
     4707  volume = {24},
     4708  number = {4},
     4709  pages = {523--535}
     4710}
     4711@misc{Atherton1993,
     4712  author = {Atherton, T.J. and Kerbyson, D.J.},
     4713  title = {Using Phase to Represent Radius in the Coherent Circle {Hough} Transform},
     4714  year = {1993},
     4715  howpublished = {IEE Colloquium on {Hough} Transforms}
     4716}
     4717@article{Lidke2005a,
     4718  author = {Lidke, D.S. and Lidke, K.A. and Rieger, B. and Jovin, T.M. and Arndt-Jovin, D.J.},
     4719  title = {Reaching out for signals: filopodia sense {EGF} and respond by directed retrograde transport of activated receptors},
     4720  journal = {Journal of Cell Biology},
     4721  year = {2005},
     4722  volume = {170},
     4723  pages = {619-626}
     4724}
     4725@article{Squire2000,
     4726  author = {Squire, D. and Caelli, T.},
     4727  title = { Invariant Signatures: Characterizing Contours by their Departures from Invariance},
     4728  journal = {Computer Vision and Image Understanding},
     4729  year = {2000},
     4730  volume = {77},
     4731  number = {3},
     4732  pages = {284--316}
     4733}
     4734@article{Lidke2005b,
     4735  author = {Lidke, K.A. and Rieger, B. and Jovin, T.M. and Heintzmann, R.},
     4736  title = {Superresolution by localization of quantum dots using blinking statistics},
     4737  journal = {Optics Express},
     4738  year = {2005},
     4739  volume = {13},
     4740  number = {18},
     4741  pages = {7052-7062}
     4742}
     4743@article{Rosenfeld1968,
     4744  author = {Rosenfeld, A. and Pfaltz, J.L.},
     4745  title = {Distance functions on digital pictures},
     4746  journal = {Pattern Recognition},
     4747  year = {1968},
     4748  volume = {1},
     4749  number = {1},
     4750  pages = {33-61},
     4751  month = {july}
     4752}
     4753@article{Garini1999,
     4754  author = {Garini, Y. and Bar-Am, G.I. and Cabib, D. and Katzir, N.},
     4755  title = {Signal to Noise Analysis of Multiple Color Fluorescence Imaging Microscopy},
     4756  journal = {Cytometry},
     4757  year = {1999},
     4758  volume = {35},
     4759  number = {3},
     4760  pages = {214-226}
     4761}
     4762@article{Yuen1997,
     4763  author = {Yuen, S.Y. and Ma, C.H.},
     4764  title = {An Investigation of the Nature of Parameterization for the {Hough} Transform},
     4765  journal = {Pattern Recognition},
     4766  year = {1997},
     4767  volume = {30},
     4768  number = {6},
     4769  pages = {1009--1040}
     4770}
     4771@inproceedings{Niessen1994,
     4772  author = {Niessen, W.J. and Haar Romeny, B.M. ter and Florack, L.M.J. and Salden, A.H. and Viergever, M.A.},
     4773  title = {Nonlinear Diffusion of Scalar Images using Well-Posed Differential Operators},
     4774  year = {1994},
     4775  pages = {92--97},
     4776  booktitle = {CVPR'94 (Seattle, U.S.A.)}
     4777}
     4778@book{Rosenfeld1969,
     4779  author = {Rosenfeld, A.},
     4780  title = {Picture Processing by Computer},
     4781  year = {1969},
     4782  publisher = {Academic Press}
     4783}
     4784@article{Besl1992,
     4785  author = {Besl, P.J. and McKay, N.D.},
     4786  title = {A method for registration of {3-D} shapes},
     4787  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     4788  year = {1992},
     4789  volume = {14},
     4790  number = {2},
     4791  pages = {239-256}
     4792}
     4793@article{Neher2004a,
     4794  author = {Neher, R.A. and Neher, E.},
     4795  title = {Optimizing imaging parameters for the separation of multiple labels in a fluorescence image},
     4796  journal = {Journal of Microscopy},
     4797  year = {2004},
     4798  volume = {213},
     4799  number = {1},
     4800  pages = {46-62}
     4801}
     4802@article{Kempen1997,
     4803  author = {Kempen, G.M.P. van and Vliet, L.J. van and Verveer, P.J. and Voort, H.T.M. van der},
     4804  title = {A Quantitative Comparison of Image Restoration Methods for Confocal Microscopy},
     4805  journal = {Journal of Microscopy},
     4806  year = {1997},
     4807  volume = {185},
     4808  number = {3},
     4809  pages = {354--365}
     4810}
     4811@article{Walters1987,
     4812  author = {Walters, D.},
     4813  title = {Selection of Image Primitives for General-Purpose Visual Processing},
     4814  journal = {Computer Vision, Graphics, and Image Processing},
     4815  year = {1987},
     4816  volume = {37},
     4817  pages = {261--298}
     4818}
     4819@article{Heintzmann2001,
     4820  author = {Heintzmann, R. and Hanley, Q.S. and Ardent-Jovin, D.J. and Jovin, T.M.},
     4821  title = {A dual path programmable array microscope ({PAM}): simultaneous acquisition of conjugate and non-conjugate images},
     4822  journal = {Journal of Microscopy},
     4823  year = {2001},
     4824  volume = {204},
     4825  pages = {119-135}
     4826}
     4827@inproceedings{Kempen1999,
     4828  author = {Kempen, G.M.P. van and Brink, N. van den and Vliet, L.J. van and Ginkel, M. van and Verbeek, P.W.},
     4829  title = {The Application of a Local Dimensionality Estimator to the Analysis of 3D Microscopic Network Structures},
     4830  year = {1999},
     4831  pages = {447--455},
     4832  month = {June 7-11},
     4833  booktitle = {SCIA'99, Proc. 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland)}
     4834}
     4835@manual{Ieee1985,
     4836  author = {IEEE},
     4837  title = {{IEEE} Standard for Binary Floating-Point Arithmetic},
     4838  year = {1985},
     4839  address = {Standards Committee of the {IEEE} Computer Society},
     4840  note = {Std. 754-1985}
     4841}
     4842@article{Cairney2001,
     4843  author = {Cairney, J.M. and Munroe, P.R. and Sordelet, D.J.},
     4844  title = {Microstructural Analysis of a FeAl/quasicrystal-based composite prepared using a focused ion beam miller},
     4845  journal = {Journal of Microscopy},
     4846  year = {2001},
     4847  volume = {201, Pt 2},
     4848  pages = {201--211},
     4849  month = {February}
     4850}
     4851@article{Chen1994,
     4852  author = {Chen, Y.S.},
     4853  title = {Segmentation and Association Among Lines and Junctions for a Line Image},
     4854  journal = {Pattern Recognition},
     4855  year = {1994},
     4856  volume = {27},
     4857  number = {9},
     4858  pages = {1135--1157}
     4859}
     4860@inproceedings{Hurley1999,
     4861  author = {Hurley, D.J. and Nixon, M.S. and Carter, J.N.},
     4862  title = {Force Field Energy Functionals for Image Feature Extraction},
     4863  year = {1999},
     4864  volume = {2},
     4865  pages = {604--613},
     4866  editor = {Pridmore, T. and Elliman, D.},
     4867  booktitle = {10th British Machine Vision Conference}
     4868}
     4869@book{Kay1993,
     4870  author = {Kay, S.M.},
     4871  title = {Fundamentals of Statistical Processing: Estimation Theory},
     4872  year = {1993},
     4873  publisher = {Prentice Hall},
     4874  address = {New Jersey}
     4875}
     4876@article{Chen1993,
     4877  author = {Chen,Y.S. and Chang, S.L. and Hsu, W.H.},
     4878  title = {An Improved Line Continuation Model in Human Visual Perception},
     4879  journal = {Pattern Recognition},
     4880  year = {1993},
     4881  volume = {26},
     4882  number = {6},
     4883  pages = {825--842}
     4884}
     4885@article{Goldberg1991,
     4886  author = {Goldberg, D.},
     4887  title = {What Every Computer Scientist Should Know about Floating-Point Arithmetic},
     4888  journal = {ACM Computing Surveys},
     4889  year = {1991},
     4890  volume = {23},
     4891  number = {1},
     4892  pages = {5--48}
     4893}
     4894@article{Mancini2000,
     4895  author = {Mancini, E.J. and Fuller, S.D.},
     4896  title = {Supplanting crystallography or supplementing microscopy? A combined approach to the study of an enveloped virus},
     4897  journal = {Acta Crystallographica Section D},
     4898  year = {2000},
     4899  volume = {56},
     4900  pages = {1278-1287}
     4901}
     4902@inproceedings{Aguado1997,
     4903  author = {Aguado, A.S. and Montiel, M.E. and Nixon, M.S.},
     4904  title = {Arbitrary Shape {Hough} Transform by Invariant Geometric Features},
     4905  year = {1997},
     4906  volume = {3},
     4907  pages = {2661--2665},
     4908  month = {12--15 October},
     4909  booktitle = {International Conference on Systems, Man and Cybernetics},
     4910  organization = {IEEE}
     4911}
     4912@inproceedings{Granlund1997,
     4913  author = {Granlund, G.H.},
     4914  title = {From Multidimensional Signals to the Generation of Responses},
     4915  year = {1997},
     4916  volume = {1315},
     4917  editor = {Sommer, G. and Koenderink, J.J.},
     4918  publisher = {Springer-Verlag},
     4919  series = {Lecture Notes on Computer Science},
     4920  address = {Kiel, Germany},
     4921  booktitle = {Algebraic Frames for the Perception-Action Cycle (AFPAC 1997)}
     4922}
     4923@article{Smit1998,
     4924  author = {Smit, Th.H. and Schneider, E. and Odgaard, A.},
     4925  title = {Star Length Distribution: a Volume-Based Concept for the Characterization of Structural Anisotropy},
     4926  journal = {Journal of Microscopy},
     4927  year = {1998},
     4928  volume = {191},
     4929  number = {3},
     4930  pages = {249--257},
     4931  month = {September}
     4932}
     4933@book{Granlund1995,
     4934  author = {Granlund, G.H. and Knutsson, H.},
     4935  title = {Signal processing for computer vision},
     4936  year = {1995},
     4937  publisher = {Kluwer Academic Publishers},
     4938  address = {Boston/Dordrecht/London}
     4939}
     4940@mastersthesis{Brink1999,
     4941  author = {Brink, N. van den},
     4942  title = {Three Dimensional Image Analysis of Microstructures in Microscopical Images},
     4943  year = {1999},
     4944  address = {Delft, The Netherlands},
     4945  school = {Delft University of Technology}
     4946}
     4947@article{Acton2000a,
     4948  author = {Acton, Scott T. and Mukherjee, Dipti Prasad},
     4949  title = {Area Operators for Edge Detection},
     4950  journal = {Pattern Recognition Letters},
     4951  year = {2000},
     4952  volume = {21},
     4953  pages = {771--777}
     4954}
     4955@article{Forster2005,
     4956  author = {{F\"orster},F. and Medalia, O. and Zauberman, N. and Baumeiser, W. and Fass, D.},
     4957  title = {Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography},
     4958  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     4959  year = {2005},
     4960  volume = {102},
     4961  number = {13},
     4962  pages = {4729-4734}
     4963}
     4964@article{Mardia1999,
     4965  author = {Mardia, K.V. and Morris, R.J. and Walder, A.N. and Koenderink, J.J},
     4966  title = {Estimation of torsion},
     4967  journal = {Journal of Applied Statistics},
     4968  year = {1999},
     4969  volume = {26},
     4970  pages = {373--381}
     4971}
     4972@article{Torr1997,
     4973  author = {Torr, P.H.S. and Zisserman, A.},
     4974  title = {Robust Parameterization and Computation of the Trifocal Tensor},
     4975  journal = {Image and Vision Computing},
     4976  year = {1997},
     4977  volume = {15},
     4978  number = {8},
     4979  pages = {591--605}
     4980}
     4981@article{Richards1959,
     4982  author = {Richards, B. and Wolf, E.},
     4983  title = {Electromagnetic Diffraction in Optical Systems. {II.} Structure of the Image Field in an Aplanatic System},
     4984  journal = {Proceedings of the Royal Society of London A},
     4985  year = {1959},
     4986  volume = {253},
     4987  number = {1274},
     4988  pages = {358-379}
     4989}
     4990@incollection{Yuille1988,
     4991  author = {Yuille, A.L. and Poggio, T.},
     4992  title = {Scaling and fingerprint theorems for zero-crossings},
     4993  year = {1988},
     4994  pages = {47--78},
     4995  editor = {Christopher Brown},
     4996  publisher = {Lawrence Erlbaum Associates, Inc},
     4997  chapter = {2},
     4998  booktitle = {Advances in computer vision, volume 2}
     4999}
     5000@article{Zucker1985,
     5001  author = {Zucker, S.W.},
     5002  title = {Early Orientation Selection: Tangent Fields and the Dimensionality of Their Support},
     5003  journal = {Computer Vision, Graphics, and Image Processing},
     5004  year = {1985},
     5005  volume = {32},
     5006  pages = {74--103}
     5007}
     5008@article{Zucker1981,
     5009  author = {Zucker, S.W. and Hummel, R.A.},
     5010  title = {A 3-D edge operator},
     5011  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     5012  year = {1981},
     5013  volume = {3},
     5014  number = {3},
     5015  pages = {324--331}
     5016}
     5017@article{Kurdy1989,
     5018  author = {Kurdy, M.B. and Jeulin, D.},
     5019  title = {Directional Mathematical morphology Operations},
     5020  journal = {Acta. Stereology},
     5021  year = {1989},
     5022  volume = {8},
     5023  number = {2},
     5024  pages = {473--480}
     5025}
     5026@article{Post2005,
     5027  author = {Post, J.N. and Lidke, K.A. and Rieger, B. and Arndt-Jovin, D.J.},
     5028  title = {One- and two-photon photoactivation of a {paGFP}-fusion protein in live {Drosophila} embryos},
     5029  journal = {FEBS Letters},
     5030  year = {2005},
     5031  volume = {579},
     5032  number = {2},
     5033  pages = {325-330}
     5034}
     5035@article{Bitter2001,
     5036  author = {Bitter, I. and Kaufman, A.E.},
     5037  title = {Penalized-Distance Volumetric Skeleton Algorithm},
     5038  journal = {IEEE Transactions on Visualization and Computer Graphics},
     5039  year = {2001},
     5040  volume = {7},
     5041  number = {3},
     5042  pages = {195--205},
     5043  month = {July--September}
     5044}
     5045@article{Jeulin2001,
     5046  author = {Jeulin, D. and Monnaie, P. and P?onnet, F.},
     5047  title = {Gypsum Morphological Analysis and Modeling},
     5048  journal = {Cement {\&} Concrete Composites},
     5049  year = {2001},
     5050  volume = {23},
     5051  pages = {299--311}
     5052}
     5053@article{OConner1999,
     5054  author = {O'Conner, R.M. and Fredrich, J.T.},
     5055  title = {Microscale Flow Modeling in Geologic Materials},
     5056  journal = {Phys. Chem. Earth (A)},
     5057  year = {1999},
     5058  volume = {24},
     5059  number = {7},
     5060  pages = {611--616}
     5061}
     5062@inproceedings{Bluestein1968,
     5063  author = {Bluestein, L.I.},
     5064  title = {A Linear Filtering Approach to the Computation of the Discrete {Fourier} Transform},
     5065  year = {1968},
     5066  volume = {10},
     5067  pages = {218--129},
     5068  booktitle = {Northeast Electronics Res. and Eng. Meeting Record},
     5069  annote = {key_fft}
     5070}
     5071@article{Thust1996a,
     5072  author = {Thust, A. and Coene, W.M.J. and Beeck, M. op de and Dyck, D. van},
     5073  title = {Focal-series reconstruction in {HRTEM}: simulation studies on non-peridc objects},
     5074  journal = {Ultramicroscopy},
     5075  year = {1996},
     5076  volume = {64},
     5077  pages = {211-230}
     5078}
     5079@book{Valeur2002,
     5080  author = {Valeur, B.},
     5081  title = {Molecular Fluorescence},
     5082  year = {2002},
     5083  publisher = {Wiley-VCH},
     5084  address = {Weinheim}
     5085}
     5086@article{Hiraoka1992,
     5087  author = {Hiraoka, Y. and Agard, D.A. and Sedat, J.W.},
     5088  title = {Temporal and Spatial Coordination of Chromosome Movement, Spindle Formation, and Nuclear Envelope Breakdown During Prometaphase in Drosophila melanogaster Embryos},
     5089  journal = {The Journal of Cell Biology},
     5090  year = {1992},
     5091  volume = {111},
     5092  number = {6},
     5093  pages = {2815-2828}
     5094}
     5095@article{Heeger1988,
     5096  author = {Heeger, D.J..},
     5097  title = {Optical flow from spatio-temporal filters},
     5098  journal = {International Journal of Computer Vision},
     5099  year = {1988},
     5100  volume = {1},
     5101  pages = {279--302}
     5102}
     5103@article{Cox1999,
     5104  author = {Cox, R.W. and Raoqiong, T.},
     5105  title = {Two- and Three-Dimensional Image Rotation Using the {FFT}},
     5106  journal = {IEEE Transactions on Image Processing},
     5107  year = {1999},
     5108  volume = {8},
     5109  number = {9},
     5110  pages = {1297--1299},
     5111  month = {September},
     5112  annote = {key_fft}
     5113}
     5114@article{Parent1989,
     5115  author = {Parent, P. and Zucker, S.W.},
     5116  title = {Trace Inference, Curvature Consistency, and Curve Detection},
     5117  journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
     5118  year = {1989},
     5119  volume = {11},
     5120  number = {8},
     5121  pages = {823--839},
     5122  month = {August}
     5123}
     5124@article{Ludtke2001,
     5125  author = {Ludtke, S.J. and Jakana, J. and Song, J.-L. and Chuang, D.T. and Chiu, W.},
     5126  title = {A 11.5 single particle reconstruction of {GroEL} using {EMAN}},
     5127  journal = {Journal of Molecular Biology},
     5128  year = {2001},
     5129  volume = {314},
     5130  pages = {253-262}
     5131}
     5132@article{Niessen1997,
     5133  author = {Niessen, W.J. and Duncan, J.S. and Nielsen, M. and Florack, L.M.J. and Haar Romeny, B.M. ter and Viergever, M.A.},
     5134  title = {A multiscale approach to image sequence analysis},
     5135  journal = {Computer Vision and Image Understanding},
     5136  year = {1997},
     5137  volume = {65},
     5138  number = {2},
     5139  pages = {259-268}
     5140}
     5141@article{Hirsh1976,
     5142  author = {Hirsh, J. and Schleif, R.},
     5143  title = {High resolution electron microscopic studies of genetic regulation},
     5144  journal = {Journal of Molecular Biology},
     5145  year = {1976},
     5146  volume = {108},
     5147  number = {2},
     5148  pages = {471-490}
     5149}
     5150@article{Gemkow2001,
     5151  author = {Gemkow, M.J. and Dichter, J. and Ardent-Jovin, D.J.},
     5152  title = {Develpoment regulation of {DNA}-topoisomerases during Drosophila embryogenesis},
     5153  journal = {Experimental Cell Research},
     5154  year = {2001},
     5155  volume = {262},
     5156  pages = {114-121}
     5157}
     5158@book{Grivet1965,
     5159  author = {Grivet, P.},
     5160  title = {Electron Optics},
     5161  year = {1965},
     5162  publisher = {Pergamon Press},
     5163  address = {London},
     5164  note = {Copy Peter Tiemeijer}
     5165}
     5166@inproceedings{Forstner1987,
     5167  author = {{F\"orstner}, W. and {G\"ulch}, E.},
     5168  title = {A Fast Operator for Detection and Precise Location of Distinct Points, Corners and Centres of Circular Features},
     5169  year = {1987},
     5170  pages = {149--155},
     5171  month = {June},
     5172  booktitle = {ISPRS Intercommission Workshop (Interlaken)},
     5173  annote = {Not in collection}
     5174}
     5175@article{Squire2004,
     5176  author = {Squire, A. and Verveer, P.J. and Rocks, O. and Bastiaens, P.I.H.},
     5177  title = {Red-edge anisotropy microscopy enables dynamic imaging of homo-{FRET} between fluorescent proteins in cells},
     5178  journal = {Journal of Structural Biology},
     5179  year = {2004},
     5180  volume = {147},
     5181  number = {1},
     5182  pages = {62-69}
     5183}
     5184@phdthesis{Westin1994,
     5185  author = {Westin, C.F.},
     5186  title = {A Tensor Framework for Multidimensional Signal Processing},
     5187  year = {1994},
     5188  address = {{Link\"oping, Sweden}},
     5189  school = {{Link\"oping University}}
     5190}
     5191@inproceedings{Matheron2002,
     5192  author = {Matheron, G. and Serra, J.},
     5193  title = {The Birth of Mathematical Morphology},
     5194  year = {2002},
     5195  editor = {Talbot, H. and Beare, R.},
     5196  publisher = {CSIRO Publishing},
     5197  address = {Collingwood, Australia},
     5198  booktitle = {Mathematical Morphology, Proceedings of the VI International Symposium ISMM, Sydney, April 2002}
     5199}
     5200@article{Gauch1993,
     5201  author = {Gauch, J.M. and Pizer, S.M.},
     5202  title = {Multiresolution Analysis of Ridges and Valleys in Grey-Scale Images},
     5203  journal = {IEEE Transactions on Pattern Analysis and Machine Analysis},
     5204  year = {1993},
     5205  volume = {15},
     5206  number = {6},
     5207  pages = {635--646},
     5208  month = {June}
     5209}
     5210@article{Dellby2001,
     5211  author = {Bellby, N. and Krinvanek, O.L. and Nellist, P.D. and Batson, P.E. and Lupini, A.R.},
     5212  title = {Progress in aberration-corrected scanning transmission electron microscopy},
     5213  journal = {Journal of Electron Microscopy},
     5214  year = {2001},
     5215  volume = {50},
     5216  number = {3},
     5217  pages = {177-185}
     5218}
     5219@inproceedings{Westin1992,
     5220  author = {Westin, C.-F. and Knutsson, H.},
     5221  title = {The {M\"obius} Strip Parameterization for Line Extraction},
     5222  year = {1992},
     5223  volume = {588},
     5224  pages = {33--38},
     5225  publisher = {Springer-Verlag},
     5226  booktitle = {Computer Vision -- ECCV92. Proceedings, 1992}
     5227}
     5228@article{Gauch1993a,
     5229  author = {Gauch, J.M. and Pizer, S.M.},
     5230  title = {The Intensity Axis of Symmetry and its Application to Image Segmentation},
     5231  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     5232  year = {1993},
     5233  volume = {15},
     5234  number = {8},
     5235  pages = {753--770},
     5236  month = {August}
     5237}
     5238@article{Bruun1978,
     5239  author = {Bruun, G.},
     5240  title = {z-Transform {DFT} Filters and {FFT}'s},
     5241  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
     5242  year = {1978},
     5243  volume = {26},
     5244  number = {1},
     5245  pages = {56--63},
     5246  month = {February},
     5247  annote = {key_fft}
     5248}
     5249@article{Cheng1992,
     5250  author = {Cheng, F. and Venetsanopoulos, A. N.},
     5251  title = {An Adaptive Morphological Filter for Image Processing},
     5252  journal = {IEEE Transactions on Image Processing},
     5253  year = {1992},
     5254  volume = {1},
     5255  number = {4},
     5256  pages = {533-539}
     5257}
     5258@article{Rockmore2000,
     5259  author = {Rockmore, D.},
     5260  title = {The {FFT} -- An Algorithm the Whole Family Can Use},
     5261  journal = {Computing in Science \& Engineering},
     5262  year = {2000},
     5263  volume = {2},
     5264  number = {1},
     5265  pages = {60--64},
     5266  month = {January/February}
     5267}
     5268@book{Porat1994,
     5269  author = {Porat, B.},
     5270  title = {Digital Signal Processing of Random Signals},
     5271  year = {1994},
     5272  publisher = {Prentice Hall}
     5273}
     5274@inproceedings{Knutsson1981a,
     5275  author = {Knutsson, H. and Wilson, R. and Granlund, G.H.},
     5276  title = {Anisotropic Filtering Controlled by Image Content},
     5277  year = {1981},
     5278  booktitle = {Proceedings of the 2nd Scandinavian Conference on Image Analysis (Finland)}
     5279}
     5280@book{Chung1974,
     5281  author = {Chung, K.L.},
     5282  title = {Elementary Probability Theory with Stochastic Processes},
     5283  year = {1974},
     5284  publisher = {Springer Verlag},
     5285  edition = {second}
     5286}
     5287@inproceedings{Barman1991a,
     5288  author = {{B\aa rman}, H. and Haglund, L. and Granlund, G. H. and Knutsson, H.},
     5289  title = {Estimation of velocity, acceleration and disparity in time sequences},
     5290  year = {1991},
     5291  pages = {44-51},
     5292  booktitle = {Proc. Conf. Pattern Recognition ICPR'91}
     5293}
     5294@article{Gui2000,
     5295  author = {Gui, L. and Merzkirch, W.},
     5296  title = {A comparative study of the MQD method and several correlation-based PIV evaluation algorithms},
     5297  journal = {Experiments in Fluids},
     5298  year = {2000},
     5299  volume = {28},
     5300  number = {1},
     5301  pages = {36-44}
     5302}
     5303@article{Li1994,
     5304  author = {Li, X. and Chen, T.},
     5305  title = {Nonlinear Diffusion with Multiple Edginess Thresholds},
     5306  journal = {Pattern Recognition},
     5307  year = {1994},
     5308  volume = {27},
     5309  number = {8},
     5310  pages = {1029--1037}
     5311}
     5312@article{Canny1986,
     5313  author = {Canny, J.},
     5314  title = {A Computational Approach to Edge Detection},
     5315  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     5316  year = {1986},
     5317  volume = {8},
     5318  number = {6},
     5319  pages = {679--697},
     5320  month = {November}
     5321}
     5322@article{Rodrigo2004a,
     5323  author = {Rodrigo, P.J. and Daria, V.R. and {Gl\"uckstad}, J.},
     5324  title = {Real-time three-dimensional optical micromanipulation of multiple particles and living cells},
     5325  journal = {Optics Letters},
     5326  year = {2005},
     5327  volume = {29},
     5328  number = {19},
     5329  pages = {2270-2273}
     5330}
     5331@inproceedings{Bracewell1984,
     5332  author = {Bracewell, R.N.},
     5333  title = {The Fast {H}artley Transform},
     5334  year = {1984},
     5335  pages = {1010--1018},
     5336  month = {August},
     5337  booktitle = {Proc. IEEE},
     5338  annote = {key_fft}
     5339}
     5340@article{Coggins1985,
     5341  author = {Coggins, J.M. and Jain, A.K.},
     5342  title = {A Spatial Filtering Approach to Texture Analysis},
     5343  journal = {Pattern Recognition Letters},
     5344  year = {1985},
     5345  volume = {3},
     5346  pages = {195--203}
     5347}
     5348@inproceedings{Li1998,
     5349  author = {Li, H. and Vossepoel, A.M.},
     5350  title = {Generation of the {Euclidean} Skeleton by a Bisector Decision Rule on a Two-Shortest-Vector Distance Map},
     5351  year = {1998},
     5352  volume = {12},
     5353  pages = {151--158},
     5354  editor = {Heijmans, H.J.A.M. and Roerdink, J.B.T.M.},
     5355  publisher = {Kluwer, Dordrecht},
     5356  series = {Computational Imaging and Vision},
     5357  booktitle = {Mathematical Morphology and its Applications to Image and Signal Processing}
     5358}
     5359@article{Horbelt2002,
     5360  author = {Horbelt, Stefan and Liebling, Michael and Unser, Michael},
     5361  title = {Discretization of the Radon Transform and of its Inverse by Spline Convolutions},
     5362  journal = {IEEE Transactions on Medical Imaging},
     5363  year = {2002},
     5364  volume = {21},
     5365  number = {4},
     5366  pages = {363--376},
     5367  month = {April}
     5368}
     5369@article{Bracewell1983,
     5370  author = {Bracewell, R.N.},
     5371  title = {Discrete {H}artley Transform},
     5372  journal = {J. Opt. Soc. Am.},
     5373  year = {1983},
     5374  volume = {73},
     5375  number = {12},
     5376  pages = {1832--1835},
     5377  month = {December},
     5378  annote = {key_fft}
     5379}
     5380@article{Duda1972,
     5381  author = {Duda, R.O. and Hart, P.E.},
     5382  title = {Use of the {Hough} Transformation to Detect Lines and Curves in Pictures},
     5383  journal = {Communications of the ACM},
     5384  year = {1972},
     5385  volume = {15},
     5386  number = {1},
     5387  pages = {11--15}
     5388}
     5389@article{Hopt2001,
     5390  author = {Hopt, A. and Neher, E.},
     5391  title = {Highly Nonlinear Photodamage in Two-Photon Fluorescence Microscopy},
     5392  journal = {Biophysical Journal},
     5393  year = {2001},
     5394  volume = {80},
     5395  number = {4},
     5396  pages = {2029-2036},
     5397  month = {April}
     5398}
     5399@article{Jensen2000,
     5400  author = {Jensen, G.J. and Kornberg, R.D.},
     5401  title = {Defocus-gradient corrected back-projection},
     5402  journal = {Ultramicroscopy},
     5403  year = {2000},
     5404  volume = {84},
     5405  pages = {57-64}
     5406}
     5407@article{Sanz1989,
     5408  author = {Sanz, J.L.C. and Huang, T.T.},
     5409  title = {Image Representation by Sign Information},
     5410  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     5411  year = {1989},
     5412  volume = {11},
     5413  number = {7},
     5414  pages = {729--738},
     5415  month = {July}
     5416}
     5417@article{Batson2003,
     5418  author = {Batson, P.E.},
     5419  title = {Aberration correction results in the {IBM STEM} instrument},
     5420  journal = {Ultramicroscopy},
     5421  year = {2003},
     5422  volume = {96},
     5423  pages = {239-249}
     5424}
     5425@article{Dorst2000,
     5426  author = {Dorst, L. and Boomgaard, R. van den},
     5427  title = {The Support Cone: A Representational Tool for the Analysis of Boundaries and Their Interactions},
     5428  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     5429  year = {2000},
     5430  volume = {22},
     5431  number = {2},
     5432  pages = {174--178},
     5433  month = {February}
     5434}
     5435@article{Torre1986,
     5436  author = {Torre, V. and Poggio, T.A.},
     5437  title = {On Edge Detection},
     5438  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     5439  year = {1986},
     5440  volume = {8},
     5441  number = {2},
     5442  pages = {1986},
     5443  month = {March}
     5444}
     5445@article{Montanari1968,
     5446  author = {Montanari,U.},
     5447  title = {A Method for Obtaining Skeletons Using a Quasi-Euclidean Distance.},
     5448  journal = {Journal of the Association for Computing Machinery},
     5449  year = {1968},
     5450  volume = {15},
     5451  number = {4},
     5452  pages = {600-624}
     5453}
     5454@inproceedings{Anwander2000,
     5455  author = {Anwander, A. and Neyran, B. and Baskurt, A.},
     5456  title = {Segmentation of Crystals in Microscopic Images using Multi-scale Color Gradient (MCG)},
     5457  year = {2000},
     5458  booktitle = {International Conference on Color in Graphics and Image Processing CGIP2000}
     5459}
     5460@inproceedings{Ginkel1997a,
     5461  author = {Ginkel, M. van and Verbeek, P.W. and van Vliet, L.J.},
     5462  title = {Multi-Orientation Estimation: Selectivity and Localization},
     5463  year = {1997},
     5464  pages = {99--105},
     5465  month = {June 2-4},
     5466  editor = {Bal, H.E. and Corporaal, H. and Jonker, P.P. and Tonino, J.F.M.},
     5467  booktitle = {Proceedings of the 3rd Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands)}
     5468}
     5469@article{Chen1989,
     5470  author = {Chen, Y.S. and Hsu, W.H.},
     5471  title = {An Interpretive Model of Line Continuation in Human Visual Perception},
     5472  journal = {Pattern Recognition},
     5473  year = {1989},
     5474  volume = {22},
     5475  number = {5},
     5476  pages = {619--639}
     5477}
     5478@inproceedings{Ehrich1978,
     5479  author = {Ehrich, R.W. and Lai, P.F.},
     5480  title = {Elements of a structural model of texture},
     5481  year = {1978},
     5482  pages = {319--326},
     5483  booktitle = {Proceedings of PRIP}
     5484}
     5485@misc{Lasenby1999,
     5486  author = {Lasenby, A. and Doran, C.},
     5487  title = {A Lecture Course in Geometric Algebra},
     5488  year = {1999},
     5489  howpublished = {{\tt http://www.mrao.cam.ac.uk/~clifford/ptIIIcourse/course99/}, Geometric Algebra Research Group, Cambridge University}
     5490}
     5491@inproceedings{Beaudet1978,
     5492  author = {Beaudet, P.R.},
     5493  title = {Rotationally Invariant Image Operators},
     5494  year = {1978},
     5495  pages = {579--583},
     5496  booktitle = {International Joint Conference on Pattern Recognition}
     5497}
     5498@article{Yildiz2003,
     5499  author = {Yildiz, A. and Forkey, J.N. and McKinney, S.A. and Ha, T. and Goldman, Y.E. and Selvin, P.R.},
     5500  title = {Myosin V Walks Hand-Over-Hand: Single Fluorophore Imaging with 1.5 nm localization},
     5501  journal = {Science},
     5502  year = {2003},
     5503  volume = {300},
     5504  pages = {2061-2066}
     5505}
     5506@article{ArndtJovin2006,
     5507  author = {Arndt-Jovin, D.J. and Lidke, D.S. and Lidke, K.A. and Rieger, B. and Jovin, T.M.},
     5508  title = {Quantum dots shed light on processes in living cells},
     5509  journal = {SPIE Newsroom},
     5510  year = {2006},
     5511  volume = {DOI: 10.1117/2.1200605.0228},
     5512  pages = {1-3}
     5513}
     5514@article{Westerweel2000,
     5515  author = {Westerweel, J.},
     5516  title = {Theoretical analysis of the measurement precision in particle image velocimetry},
     5517  journal = {Experiments in Fluids },
     5518  year = {2000},
     5519  volume = {29},
     5520  number = {7},
     5521  pages = {S3-S12}
     5522}
     5523@article{Schenkeveld1997,
     5524  author = {Schenkeveld, V.M.E. and Young, I.T.},
     5525  title = {Simulations of Measurements of Fluorescene Lifetimes Using Noise-Modulated Light},
     5526  journal = {Journal of Fluorescence},
     5527  year = {1997},
     5528  volume = {7},
     5529  number = {1},
     5530  pages = {55-58}
     5531}
     5532@article{Calabi1998,
     5533  author = {Calabi, E. and Olver, P.J. and Shakiban, C. and Tannenbaum, A. and Haker, S.},
     5534  title = {Differential and Numerically Invariant Signature Curves Applied to Object Recognition},
     5535  journal = {International Journal of Computer Vision},
     5536  year = {1998},
     5537  volume = {26},
     5538  number = {2},
     5539  pages = {107--135}
     5540}
     5541@article{Barth1993,
     5542  author = {Barth, E. and Caelli, T. and Zetzsche, C.},
     5543  title = {Image Encoding, Labeling, and Reconstruction from Differential Geometry},
     5544  journal = {Graphical Models and Image Processing},
     5545  year = {1993},
     5546  volume = {55},
     5547  number = {6},
     5548  pages = {428--446}
     5549}
     5550@book{Milnor1965,
     5551  author = {Milnor, J.W.},
     5552  title = {Topology from the differentiable viewpoint},
     5553  year = {1965},
     5554  publisher = {Princeton University Press},
     5555  address = {Princeton, New Jersey}
     5556}
     5557@article{Mirza1993,
     5558  author = {Mirza, M.J. and Boyer, K.L.},
     5559  title = {Performance Evaluation of a Class of {M}-Estimators for Surface Parameter Estimation in Noisy Range Data},
     5560  journal = {IEEE Transactions on Robotics and Automation},
     5561  year = {1993},
     5562  volume = {9},
     5563  number = {1},
     5564  pages = {75--85},
     5565  month = {February}
     5566}
     5567@article{Brockett1994,
     5568  author = {Brockett, R. W. and Maragos, P.},
     5569  title = {Evolution Equations for Continuous-Scale Morphological Filtering},
     5570  journal = {IEEE Transactions on Signal Processing},
     5571  year = {1994},
     5572  volume = {42},
     5573  number = {12},
     5574  pages = {3377-3386}
     5575}
     5576@inproceedings{Brockett1992,
     5577  author = {Brockett, R. W. and Maragos, P.},
     5578  title = {Evolution Equations for Continuous-Scale Morphology},
     5579  year = {1992},
     5580  volume = {3},
     5581  pages = {125-128},
     5582  booktitle = {IEEE International Conference on Acoustics, Speech and Signal Processing}
     5583}
     5584@article{Clapp2004,
     5585  author = {Clapp, A.R. and Medintz, I.L. and Mauro, J.M. and Fisher, B.R. and Bawendi, M.G. and Mattoussi, H.},
     5586  title = {Fluorescence Resonance Energy Transfer Between Quantum Dot Donors and Dye-Labeled Protein Acceptors},
     5587  journal = {Journal of the American Chemical Society},
     5588  year = {2004},
     5589  volume = {126},
     5590  pages = {301-310}
     5591}
     5592@article{Chen1995,
     5593  author = {Chen, S. and Haralick, R.M.},
     5594  title = {Recursive Erosion, Dilation, Opening, and Closing Transforms},
     5595  journal = {IEEE Transactions on Image Processing},
     5596  year = {1995},
     5597  volume = {4},
     5598  number = {3},
     5599  pages = {335-346}
     5600}
     5601@article{Curtis1987,
     5602  author = {Curtis, S.R. and Oppenheim, A.V.},
     5603  title = {Reconstruction of Multidimensional Signals from Zero Crossings},
     5604  journal = {Journal of the Optical Society of America A},
     5605  year = {1987},
     5606  volume = {4},
     5607  number = {1},
     5608  pages = {221--231},
     5609  month = {January}
     5610}
     5611@article{Rattey1981,
     5612  author = {Rattey, P.A. and Lindgren, A.G.},
     5613  title = {Sampling the 2-{D} {R}adon Transform},
     5614  journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
     5615  year = {1981},
     5616  volume = {29},
     5617  number = {5},
     5618  pages = {994--1002},
     5619  month = {October},
     5620  annote = {key_radon}
     5621}
     5622@article{Pluim2003,
     5623  author = {Pluim, J.P.W. and Maintz, J.B.A. and Viergever, M.A.},
     5624  title = {Mutual-Information-based registration of medical images: a survey},
     5625  journal = {IEEE Transactions on Medical Imaging},
     5626  year = {2003},
     5627  volume = {22},
     5628  pages = {986-1004}
     5629}
     5630@article{Volkmann2003,
     5631  author = {Volkmann, N. and Ouyang, G. and Trybus, K.M. and DeRosier, D.J. and Lowey, S. and Hanein, D.},
     5632  title = {Myosin isoforms show unique conformations in the actin-bound state},
     5633  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     5634  year = {2003},
     5635  volume = {100},
     5636  number = {6},
     5637  pages = {3227-3232}
     5638}
     5639@article{Pham2006,
     5640  author = {Pham, T.Q. and Vliet, L.J. van and Schutte, K.},
     5641  title = { Robust fusion of irregularly sampled data using adaptive normalized convolution},
     5642  journal = {EURASIP Journal on Applied Signal Processing},
     5643  year = {2006},
     5644  volume = { },
     5645  pages = {1-12}
     5646}
     5647@article{Hoyer2004,
     5648  author = {Hoyer, W. and Cherny, D.I. and Subramaniam, V. and Jovin, T.M.},
     5649  title = {Rapid self-assembly of $\alpha$-synuclein observed by in situ atomic force microscopy},
     5650  journal = {Journal of Molecular Biology},
     5651  year = {2004},
     5652  volume = {340},
     5653  number = {1},
     5654  pages = {127-139}
     5655}
     5656@inproceedings{Pham2005,
     5657  author = {Pham, T.Q. and Bezuijen, M. and Vliet, L.J. van and Schutte, K. and Luengo Hendriks, C.L.},
     5658  title = {Performance of optimal registration estimators},
     5659  year = {2005},
     5660  volume = {5817},
     5661  pages = {133-144},
     5662  month = {March 29-30},
     5663  editor = {Rahman, Z. and Schowengerdt, R.A. and Reichenbach, S.E.},
     5664  series = {Proceedings of SPIE Defense \& Security},
     5665  address = {Orlando, USA},
     5666  booktitle = {Visual Information Processing XIV}
     5667}
     5668@article{Harada2005,
     5669  author = {Harada, K. and Akashi, T. and Togawa, Y. and Matsuda, T. and Tonomura, A.},
     5670  title = {Optical system for double-biprism electron holography},
     5671  journal = {Journal of Electron Microscopy},
     5672  year = {2005},
     5673  volume = {54},
     5674  number = {1},
     5675  pages = {19-27}
     5676}
     5677@inproceedings{Pham2003,
     5678  author = {Pham, T.Q. and Vliet, L.J. van},
     5679  title = {Normalized averaging using adaptive applicability functions with applications in image reconstruction from sparsely and randomly sampled data},
     5680  year = {2003},
     5681  pages = {485-492},
     5682  month = {June 29 -July 2 },
     5683  editor = {{Big\"un}, J. and Gustavsson, T. },
     5684  publisher = {Springer-Verlag },
     5685  series = {LNCS 2749 },
     5686  address = {Berlin},
     5687  booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) }
     5688}
     5689@article{Scharcanski2000,
     5690  author = {Scharcanski, J. and Dodson, C.T.J.},
     5691  title = {Stochastic Texture Image Estimators for Local Spatial Anisotropy and Its Variability},
     5692  journal = {IEEE Transactions on Instrumentation and Measurement},
     5693  year = {2000},
     5694  volume = {49},
     5695  number = {5},
     5696  pages = {971--979},
     5697  month = {October}
     5698}
     5699@article{Ballard1983,
     5700  author = {Ballard, D.H. and Sabbah, D.},
     5701  title = {Viewer Independent Shape Recognition},
     5702  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     5703  year = {1983},
     5704  volume = {5},
     5705  number = {6},
     5706  pages = {653--660},
     5707  annote = {key_radon}
     5708}
     5709@incollection{Alvarez1994,
     5710  author = {Alvarez, L. and Morel, J.-M.},
     5711  title = {Morphological Approach to Multi-scale Analysis: From Principles to Equations},
     5712  year = {1994},
     5713  editor = {Viergever, M. A.},
     5714  publisher = {Kluwer Academic Publishers},
     5715  address = {Dordrecht},
     5716  booktitle = {Geometry-Driven Diffusion in Computer Vision}
     5717}
     5718@inproceedings{Diehl1989,
     5719  author = {Diehl, N. and Burkhardt, H.},
     5720  title = {Planar motion estimation with a fast converging algorithm},
     5721  year = {1989},
     5722  pages = {1099--1102},
     5723  address = {Paris, France},
     5724  booktitle = {Proc. 8th Int. Conf. Pattern Recognition, ICPR'86}
     5725}
     5726@article{Dirks1999,
     5727  author = {Dirks, R.W. and Hattinger, C.M. and Molenaar, C. and Snaar, S.P.},
     5728  title = {Synthesis, processing, and transport of {RNA} within the three-dimensional context of the cell nucleus},
     5729  journal = {Crit Rev Eukaryot Gene Expr},
     5730  year = {1999},
     5731  volume = {9},
     5732  number = {3-4},
     5733  pages = {191-201}
     5734}
     5735@phdthesis{Kirchgessner2003,
     5736  author = {Kirchgessner, N.},
     5737  title = {Extraktion Physiologischer Koordinatensysteme von Pflanzenwurzeln und {-Bl\"attern} aus Bildsequenzen},
     5738  year = {2003},
     5739  month = {April},
     5740  address = {Heidelberg, Germany},
     5741  school = {Ruprechts-Karls-{Universit\"at} University}
     5742}
     5743@article{Vandergheynst2002,
     5744  author = {Vandergheynst, P. and Gobbers, J.-F.},
     5745  title = {Directional Dyadic Wavelet Transforms: Design and Algorithms},
     5746  journal = {IEEE Transactions on Image Processing},
     5747  year = {2002},
     5748  volume = {11},
     5749  number = {4},
     5750  pages = {363--372},
     5751  month = {April}
     5752}
     5753@article{Meyer2002,
     5754  author = {Meyer, R.R. and Kirkland, A.I. and Saxton, W.O.},
     5755  title = {A new method for the determination of the wave aberration function for high resolution {TEM} {1. Measurement} of the symmetric aberrations},
     5756  journal = {Ultramicroscopy},
     5757  year = {2002},
     5758  volume = {92},
     5759  pages = {89-109}
     5760}
     5761@article{Kubitscheck2000,
     5762  author = {Kubitscheck, U. and {K\"uckmann}, O. and Kues, T. and Peters, R.},
     5763  title = {Imaging and Tracking of Single {GFP} Molecules in Solution},
     5764  journal = {Biophysical Journal},
     5765  year = {2000},
     5766  volume = {78},
     5767  pages = {2170-2179},
     5768  month = {April}
     5769}
     5770@inproceedings{Harris1988,
     5771  author = {Harris, C. and Stephens, M.},
     5772  title = {A Combined Corner and Edge Detector},
     5773  year = {1988},
     5774  pages = {147--151},
     5775  month = {31 August--2 September},
     5776  booktitle = {Proceedings of the fourth Alvey Vision Conference},
     5777  organization = {University of Manchester}
     5778}
     5779@inproceedings{Harris1987,
     5780  author = {Harris, C.G.},
     5781  title = {Determination of Ego-Motion from Matched Points},
     5782  year = {1987},
     5783  booktitle = {Proceedings of the Alvey Vision Conference},
     5784  annote = {Not in collection}
     5785}
     5786@article{Muller2001,
     5787  author = {Muller, D.A. and Grazul, J.},
     5788  title = {Optimizing the environment for sub-0.2 nm scanning transmission electron microscopy},
     5789  journal = {Journal of Electron Microscopy},
     5790  year = {2001},
     5791  volume = {50},
     5792  number = {3},
     5793  pages = {219-226}
     5794}
     5795@misc{Mathematica,
     5796  author = {Wolfram Research},
     5797  title = {Mathematica 4},
     5798  year = {1998},
     5799  note = {{\tt www.wolfram.com}}
     5800}
     5801@article{Leis2006,
     5802  author = {Leis, A.P. and Beck, M. and Gruska, M. and Best, C. and Hegerl, R. and Baumeister, W. and Leis, J.W.},
     5803  title = {The essential role of digital signal processing in automated tomography},
     5804  journal = {IEEE Signal Processing Magazine},
     5805  year = {2006},
     5806  volume = {23},
     5807  number = {3},
     5808  pages = {95-103}
     5809}
     5810@article{Kube1996,
     5811  author = {Kube, P. and Perona, P.},
     5812  title = {Scale-space Properties of Quadratic Feature Detectors},
     5813  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     5814  year = {1996},
     5815  volume = {18},
     5816  number = {10},
     5817  pages = {987--999},
     5818  month = {October}
     5819}
     5820@article{Bluestein1970,
     5821  author = {Bluestein, L.I.},
     5822  title = {A Linear Filtering Approach to the Computation of Discrete {Fourier} Transform},
     5823  journal = {IEEE Transactions on Audio and Electroacoustics},
     5824  year = {1970},
     5825  volume = {18},
     5826  number = {4},
     5827  pages = {451--455},
     5828  month = {December},
     5829  annote = {key_fft}
     5830}
     5831@article{Danielsson1980,
     5832  author = {Danielsson, P.-E.},
     5833  title = {Euclidean Distance Mapping},
     5834  journal = {Computer Graphics and Image Processing},
     5835  year = {1980},
     5836  volume = {14},
     5837  pages = {227--248}
     5838}
     5839@article{Molenaar2003a,
     5840  author = {Molenaar, C. and Wiesmeijer, K. and Verwoerd, N.P. and Khazen, S. and Eils, R. and Tanke, H.J. and Dirks, R.W.},
     5841  title = {Visualizing telomere dynamics in living mammalian cells using {PNA} probes},
     5842  journal = {The EMBO Journal},
     5843  year = {2003},
     5844  volume = {22},
     5845  number = {24},
     5846  pages = {6631-6641}
     5847}
     5848@article{Rieger2004d,
     5849  author = {Rieger, B. and Dietrich, H.R.C. and Doel, L.R. van den and Vliet, L.J. van},
     5850  title = {Diffusion of microspheres in sealed and open microarrays},
     5851  journal = {Microscopy Research and Technique},
     5852  year = {2004},
     5853  volume = {65},
     5854  number = {3},
     5855  pages = {218-225}
     5856}
     5857@phdthesis{Rieger2004a,
     5858  author = {Rieger, B.},
     5859  title = {Structure from Motion in nD Image Analysis},
     5860  year = {2004},
     5861  address = {Delft, The Netherlands},
     5862  school = {Delft University of Technology},
     5863  note = {digital version available:\\\ {\small\tt http://www.ph.tn.tudelft.nl/Publications/PHDTheses/BRieger/thesis_rieger.html}}
     5864}
     5865@misc{Krivanek2003,
     5866  author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.},
     5867  title = {Autoadjusting charged-particle probe-forming apparatus},
     5868  year = {2003},
     5869  howpublished = {US6552340}
     5870}
     5871@article{Royer2000,
     5872  author = {Royer, W.E. Jr. and Strand, K. and Heel, M. van and Hendrickson, W.A. },
     5873  title = {Structural hierarchy in erythrocruorin, the giant respiratory assemblage of annelids},
     5874  journal = {Biochemistry},
     5875  year = {2000},
     5876  volume = {97},
     5877  pages = {7107-7111}
     5878}
     5879@article{Rieger2004b,
     5880  author = {Rieger, B. and Timmermans, F.J. and Vliet, L.J. van and Verbeek, P.W.},
     5881  title = {On curvature estimation of iso-surfaces in 3D gray-value images and the computation of shape descriptors},
     5882  journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
     5883  year = {2004},
     5884  volume = {26},
     5885  number = {8},
     5886  pages = {1088-1094}
     5887}
     5888@article{Desbat1993,
     5889  author = {Desbat, L.},
     5890  title = {Efficient Sampling on Coarse Grids in Tomography},
     5891  journal = {Inverse Problems},
     5892  year = {1993},
     5893  volume = {9},
     5894  pages = {251--269},
     5895  annote = {key_radon}
     5896}
     5897@article{Goldman2002,
     5898  author = {Goldmann, E.},
     5899  title = {A new window on the cell's inner workings},
     5900  journal = {Science},
     5901  year = {2002},
     5902  volume = {298},
     5903  pages = {1155-1156}
     5904}
     5905@misc{WeickertYYYY,
     5906  author = {Weickert, J. and Ishikawa, S. and Imiya, A.},
     5907  title = {On the History of Gaussian Scale-Space Axiomatics},
     5908  annote = {Chapter 4 from something}
     5909}
     5910@article{DorphPetersen2000,
     5911  author = {Dorph-Petersen, K.-A. and Gundersen, H.J.G. and Jensen, E.B.V.},
     5912  title = {Non-Uniform Systematic Sampling in Stereology},
     5913  journal = {Journal of Microscopy},
     5914  year = {2000},
     5915  volume = {200, Pt 2},
     5916  pages = {148--157},
     5917  month = {November}
     5918}
     5919@article{Fernandez1997,
     5920  author = {Feranandez, J.J. and Sanjurjo, J.R. and Carazo, J.-M.},
     5921  title = {A spectral estimation approach to contrast transfer function detection in electron microscopy},
     5922  journal = {Ultramicroscopy},
     5923  year = {1997},
     5924  volume = {68},
     5925  pages = {267-295}
     5926}
     5927@inproceedings{Bakker2001a,
     5928  author = {Bakker, P. and Verbeek, P.W. and Vliet, L.J. van},
     5929  title = {Analysis and detection of 3-D curvilinear structures},
     5930  year = {2001},
     5931  pages = {35--40},
     5932  month = {May 30-june 1},
     5933  editor = {Vliet, L.J. van and Heijnsdijk, J.W.K. and Kielmann, T. and Knijnenburg, P.M.W.},
     5934  booktitle = {ASCI'01 (Heijen, The Netherlands)},
     5935  organization = {ASCI}
     5936}
     5937@article{Rodrigo2004,
     5938  author = {Rodrigo, P.J. and Daria, V.R. and {Gl\"uckstad}, J.},
     5939  title = {Real-time interactive optical micromanipulation of a mixture of high- and low-index particles},
     5940  journal = {Optics Express},
     5941  year = {2004},
     5942  volume = {12},
     5943  number = {7},
     5944  pages = {1417-1425}
     5945}
     5946@unpublished{Verbeek2001a,
     5947  author = {Verbeek, P.W.},
     5948  title = {Continuous Cube to Cube Mappings as Analytic 3{D} Look-up Tables for {RGB} Color Rendering}
     5949}
     5950@article{Rodrigo2005,
     5951  author = {Rodrigo, P.J. and Daria, V.R. and {Gl\"uckstad}, J.},
     5952  title = {Four-dimensional optical manipulation of colloidal particles},
     5953  journal = {Applied Physics Letters},
     5954  year = {2005},
     5955  volume = {86},
     5956  number = {7},
     5957  pages = {074103}
     5958}
     5959@inproceedings{Niblack1988,
     5960  author = {Niblack, W. and Petkovic, D.},
     5961  title = {On Improving the Accuracy of the {H}ough Transform: Theory, Simulations, and Experiments},
     5962  year = {1988},
     5963  pages = {574--579},
     5964  month = {June},
     5965  booktitle = {Proceedings of the IEEE Computer Society Conference CVPR (Ann-Arbor)},
     5966  annote = {key_radon}
     5967}
     5968@article{Gautier2001,
     5969  author = {Gautier, I. and Tramier, C. and Coppey, J. and Pansu, R.B. and Nicolas, J-C. and Kemnitz, K. and Coppey-Moisan, M.},
     5970  title = {Homo-{FRET} Microscopy in Living Cells to Measure Monomer-Dimer Transition of {GFP}-Tagged Proteins},
     5971  journal = {Biophysical Journal},
     5972  year = {2001},
     5973  volume = {80},
     5974  number = {6},
     5975  pages = {3000-3008}
     5976}
     5977@inproceedings{Nystrom2001,
     5978  author = {{Nystr\"om}, I. and Sanniti di Baja, G. and Svensson, S.},
     5979  title = {Curve Skeletonization by Junction Detection in Surface Skeletons},
     5980  year = {2001},
     5981  volume = {2059},
     5982  pages = {229--238},
     5983  editor = {Arcelli, C. and Cordella, L.P. and Sanniti di Baja, G.},
     5984  publisher = {Springer-Verlag},
     5985  series = {Lecture Notes on Computer Science},
     5986  booktitle = {IWVF4, 4th International Workshop on Visual Form}
     5987}
     5988@article{Cianci2004,
     5989  author = {Cianci, G.C. and Wu, J. and Berland, K.M.},
     5990  title = {Saturation Modified Point Spread Functions in Two-Photon Microscopy},
     5991  journal = {Microscopy Research and Technique},
     5992  year = {2004},
     5993  volume = {64},
     5994  number = {2},
     5995  pages = {135-141}
     5996}
     5997@article{Good1971,
     5998  author = {Good, I.J.},
     5999  title = {The Relationship Between two Fast {Fourier} Transforms},
     6000  journal = {IEEE Transactions on Computers},
     6001  year = {1971},
     6002  volume = {C-20},
     6003  number = {3},
     6004  pages = {310--317},
     6005  month = {March},
     6006  annote = {key_fft}
     6007}
     6008@manual{Ieee1987,
     6009  author = {IEEE},
     6010  title = {{IEEE} Standard for Radix-Independent Floating-Point Arithmetic},
     6011  year = {1987},
     6012  address = {Technical Committee on Microprocessors and Microcomputers of the {IEEE} Computer Society},
     6013  note = {Std. 854-1987}
     6014}
     6015@book{Spivak1979,
     6016  author = {M. Spivak},
     6017  title = {A Comprehensive Introduction to Differential Geometry},
     6018  year = {1979},
     6019  volume = {2},
     6020  publisher = {Publish or Perish},
     6021  address = {Berkley}
     6022}
     6023@inproceedings{Paeth1986,
     6024  author = {Paeth, A.W.},
     6025  title = {A Fast Algorithm for General Raster Rotation},
     6026  year = {1986},
     6027  pages = {77--81},
     6028  editor = {Green, M.},
     6029  booktitle = {Graphics Interface '86}
     6030}
     6031@article{Dong1998,
     6032  author = {Dong, X.F. and Natarajan, P. and Tihova, M. and Johnson, J.E. and Schneemann, A.},
     6033  title = {Particle Polymorphism Caused by Deletion of a Peptide Molecular Switch in a Quasiequivalent Icosahedral Virus},
     6034  journal = {Journal of Virology},
     6035  year = {1998},
     6036  volume = {72},
     6037  pages = {6024-6033},
     6038  note = {Ultramicroscopy}
     6039}
     6040@phdthesis{Barman1991,
     6041  author = {{B\aa rman}, H.},
     6042  title = {Hierarchical Curvature Estimation in Computer Vision},
     6043  year = {1991},
     6044  school = {{Link\"oping} University, Sweden}
     6045}
     6046@article{Zetzsche1991,
     6047  author = {Zetzsche, C. and Barth, E.},
     6048  title = {Direct detection of flow discontinuities by 3D curvature operators},
     6049  journal = {Pattern Recognition Letters},
     6050  year = {1991},
     6051  volume = {12},
     6052  pages = {771--779}
     6053}
     6054@inproceedings{Barman1990,
     6055  author = {{B\aa rman}, H. and Granlund, G. H. and Knutsson, H.},
     6056  title = {Estimation of Curvature in 3-{D} Images Using Tensor Field Filtering},
     6057  year = {1990},
     6058  pages = {563--565},
     6059  editor = {O. Faugeras},
     6060  publisher = {Springer-Verlag},
     6061  booktitle = {Computer Vision -- ECCV90. Proceedings, 1990}
     6062}
     6063@article{Minkowski1903,
     6064  author = {Minkowski, H.},
     6065  title = {Volumen und {Oberfl\"achen}},
     6066  journal = {Mathematische Annalen},
     6067  year = {1903},
     6068  pages = {447--495}
     6069}
     6070@book{Foley1996,
     6071  author = {Foley, J.D. and Dam, A. van and Feiner, S.K. and Hughes, J.F.},
     6072  title = {Computer graphics, principles and practice},
     6073  year = {1996},
     6074  publisher = {Addison-Wesley},
     6075  address = {London},
     6076  edition = {2}
     6077}
     6078@book{Boyce1986,
     6079  author = {Boyce, W.E. and DiPrima, R.C.},
     6080  title = {Elementary differential equations and boundary value problems},
     6081  year = {1986},
     6082  publisher = {John Wiley \& sons},
     6083  edition = {fourth}
     6084}
     6085@article{Cranage1988,
     6086  author = {Cranage, R.W. and Tofts, P.S.},
     6087  title = {Ring Artifacts in {X}-Ray Computed Tomography},
     6088  journal = {British Journal of Radiology},
     6089  year = {1988},
     6090  volume = {61},
     6091  number = {726},
     6092  pages = {529--529}
     6093}
     6094@inproceedings{Luengo2001,
     6095  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
     6096  title = {Segmentation-Free Estimation of Length Distributions Using Sieves and RIA Morphology},
     6097  year = {2001},
     6098  volume = {2106},
     6099  pages = {389--406},
     6100  editor = {Kerckhove, M.},
     6101  publisher = {Springer-Verlag},
     6102  series = {Lecture Notes on Computer Science},
     6103  address = {Vancouver, Canada},
     6104  booktitle = {Proc. Third International Conference on Scale-Space}
     6105}
     6106@article{Hillyard1993,
     6107  author = {Hillyard, J. and Silcox, J.},
     6108  title = {Thickness effects in {ADF STEM} zone axis images},
     6109  journal = {Ultramicroscopy},
     6110  year = {1993},
     6111  volume = {52},
     6112  pages = {325-334 }
     6113}
     6114@phdthesis{Aronsson2002,
     6115  author = {Aronsson, M.},
     6116  title = {On 3D Fibre Measurement of Digitized Paper},
     6117  year = {2002},
     6118  address = {Uppsala, Sweden},
     6119  school = {Swedish University of Agricultural Science}
     6120}
     6121@inbook{Berkner1995,
     6122  author = {Berkner, K. and Evertsz, C.J.G. and Berghorn, W.},
     6123  title = {Visualisierung - Dynamik und {Komplexit\"at}},
     6124  year = {1995},
     6125  publisher = {Tagungsband Bremen},
     6126  chapter = {Eine lokale Charakterisierung von Kanten basierend auf Skalierungseigenschaften von Wavelet-Transformation}
     6127}
     6128@article{Martens1997,
     6129  author = {Martens, J.B.},
     6130  title = {Local Orientation Analysis in Images by Means of the Hermite Transform},
     6131  journal = {IEEE Transactions on Image Processing},
     6132  year = {1997},
     6133  volume = {6},
     6134  number = {8},
     6135  pages = {1103--1116},
     6136  month = {August}
     6137}
     6138@inproceedings{Wheeler2000,
     6139  author = {Wheeler, M. and Zmuda, M. A.},
     6140  title = {Processing Color and Complex Data using Mathematical Morphology},
     6141  year = {2000},
     6142  volume = {1},
     6143  pages = {618-624},
     6144  address = {Berlin},
     6145  booktitle = {Proceedings of the IEEE, National Aerospace and Electronics Conference}
     6146}
     6147@article{Svensson2002,
     6148  author = {Svensson, S. and Borgefors, G.},
     6149  title = {Distance transforms in 3D using four different weights},
     6150  journal = {Pattern Recognition Letters},
     6151  year = {2002},
     6152  volume = {23},
     6153  pages = {1407--1418}
     6154}
     6155@article{Mattheyses2004,
     6156  author = {Mattheyses, A.L. and Hoppe, A.D. and Axelrod, D.},
     6157  title = {Polarized Fluorescence Resonance Energy Transfer Microscopy},
     6158  journal = {Biophysical Journal},
     6159  year = {2004},
     6160  volume = {87},
     6161  number = {4},
     6162  pages = {2787-2797}
     6163}
     6164@phdthesis{Verveer1998b,
     6165  author = {Verveer, P.J.},
     6166  title = {Computational and Optical Methods for Improving Resolution and Signal Quality in Fluorescence Microscopy},
     6167  year = {1998},
     6168  address = {Delft, The Netherlands},
     6169  school = {Technische Universiteit Delft},
     6170  type = {Thesis}
     6171}
     6172@inproceedings{Illers2004a,
     6173  author = {Illers, H. and Broucke, D. van den and Buhr, E.},
     6174  title = {Measurement of correlated noise in images of computed radiography systems and its influence on the detective quantum efficiency},
     6175  year = {2004},
     6176  address = {San Diego, California, USA},
     6177  booktitle = {Proceedings of SPIE}
     6178}
     6179@article{Verveer1998a,
     6180  author = {Verveer, P.J. and Jovin, T.M.},
     6181  title = {Improved Restoration from Multiple Images of a Single Object: Application to Fluorescence Microscopy},
     6182  journal = {Applied Optics},
     6183  year = {1998},
     6184  volume = {37},
     6185  number = {26},
     6186  pages = {6240-6239}
     6187}
     6188@book{Serra1988,
     6189  title = {Image Analysis and Mathematical Morphology, Volume 2: Theoretical Advances},
     6190  year = {1988},
     6191  editor = {Serra, J.},
     6192  publisher = {Academic Press},
     6193  address = {London}
     6194}
     6195@article{Chen2000,
     6196  author = {Chen, J. and Sato, Y. and Tamura, S.},
     6197  title = {Orientation Space Filtering for Multiple Orientation Line Segmentation},
     6198  journal = {Pattern Analysis and Machine Intelligence},
     6199  year = {2000},
     6200  volume = {22},
     6201  number = {5},
     6202  pages = {417--429},
     6203  month = {May}
     6204}
     6205@article{Hestenes1994a,
     6206  author = {Hestenes, D.},
     6207  title = {Invariant Body Kinematics: {II}. Reaching and Neurogeometry},
     6208  journal = {Neural Networks},
     6209  year = {1994},
     6210  volume = {7},
     6211  number = {1},
     6212  pages = {79--88}
     6213}
     6214@article{Zemlin2002,
     6215  author = {Zemlin, J. and Zemlin, F.},
     6216  title = {Diffractogram tableaux by mouse click},
     6217  journal = {Ultramicroscopy},
     6218  year = {2002},
     6219  volume = {93},
     6220  pages = {77-82}
     6221}
     6222@inproceedings{Papoulis1976,
     6223  author = {Papoulis, A.},
     6224  title = {Topics in Signal Analysis},
     6225  year = {1976},
     6226  pages = {247--249},
     6227  month = {August},
     6228  address = {Patras, Greece},
     6229  booktitle = {International Conference on Information Sciences and Systems}
     6230}
     6231@techreport{Calway1991,
     6232  author = {Calway, A.},
     6233  title = {Incorporating Orientation Selectivity in Wavelet Transforms for Multiresolution {Fourier} Analysis of Images},
     6234  year = {1991},
     6235  month = {September},
     6236  institution = {{Link\"oping University}},
     6237  note = {LiTH-ISY-I-1243}
     6238}
     6239@article{Esa2000,
     6240  author = {Esa, A. and Edelmann, P. and Kreth, G. and Trakhtenbrot, L. and Amariglio, N. and Rechavi, G. and Hausmann, M. and Cremer, C.},
     6241  title = {Three-dimensional spectral precision distance microscopy of chromatin nanostructures after triple-colour {DNA} labelling: a study of the {BCR} region on chromosome 22 and the {Philadelphia} chromosome},
     6242  journal = {Journal of Microscopy},
     6243  year = {2000},
     6244  volume = {199},
     6245  number = {2},
     6246  pages = {96-105}
     6247}
     6248@article{Greenspan1992,
     6249  author = {Greenspan, H. and Porat, M. and Zeevi, Y.Y.},
     6250  title = {Projection-based Approach to Image Analysis: Pattern Recognition and Representation in the Position-Orientation Space},
     6251  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     6252  year = {1992},
     6253  volume = {14},
     6254  number = {11},
     6255  pages = {1105--1110},
     6256  month = {November}
     6257}
     6258@article{Nakagawa1978,
     6259  author = {Nakagawa, Y. and Rosenfeld, A.},
     6260  title = {A Note on the Use of Local Min and Max Operations in Digital Picture Processing},
     6261  journal = {IEEE Transactions on Systems, Man and Cybernetics},
     6262  year = {1978},
     6263  volume = {8},
     6264  number = {8},
     6265  pages = {3}
     6266}
     6267@article{Lenz1987,
     6268  author = {Lenz, R.},
     6269  title = {Optimal Filters for the Detection of Linear Patterns in 2-{D} and Higher Dimensional Images},
     6270  journal = {Pattern Recognition},
     6271  year = {1987},
     6272  volume = {20},
     6273  number = {2},
     6274  pages = {163--172}
     6275}
     6276@book{Oppenheim1983,
     6277  author = {Oppenheim, A.V. and Willsky, A.S. and Young, I.T.},
     6278  title = {Signals and Systems},
     6279  year = {1983},
     6280  publisher = {Prentice-Hall International},
     6281  address = {London}
     6282}
     6283@article{Abels2005,
     6284  author = {Abels, J.A. and Moreno-Herreo, F. and Heijden, T. van der and Dekker, C. and Dekker, N.H.},
     6285  title = {Single-Molecule Measurements of the Persistence Length of Double-Stranded {RNA}},
     6286  journal = {Biophysical Journal},
     6287  year = {2005},
     6288  volume = {88},
     6289  pages = {2737-2744}
     6290}
     6291@inproceedings{Breton1996kort,
     6292  author = {Breton, P. and Zucker, S.W. },
     6293  title = {Shadows and Shading Flow Fields },
     6294  year = {1996},
     6295  pages = {782--789},
     6296  booktitle = {CVPR'96 }
     6297}
     6298@book{Tukey1977,
     6299  author = {Tukey, J. W.},
     6300  title = {Exploratory Data Analysis},
     6301  year = {1977},
     6302  publisher = {Addison-Wesley},
     6303  address = {Reading, Massachusetts}
     6304}
     6305@article{Rotem1986,
     6306  author = {Rotem, D. and Zeevi, Y.Y.},
     6307  title = {Image Reconstruction from Zero Crossings},
     6308  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
     6309  year = {1986},
     6310  volume = {34},
     6311  number = {5},
     6312  pages = {1269--1277},
     6313  month = {October}
     6314}
     6315@article{Vigneau2000,
     6316  author = {Vigneau, E. and Loisel, C. and Devaux, M.F. and Cantoni, P.},
     6317  title = {Number of Particles for the Determination of Size Distribution from Microscopic Images},
     6318  journal = {Powder Technology},
     6319  year = {2000},
     6320  volume = {107},
     6321  pages = {243--250}
     6322}
     6323@article{Ammouche2001,
     6324  author = {Ammouche, A. and Riss, J. and Breysse, D. and Marchand, J.},
     6325  title = {Image Analysis for the Automated Study of Microcracks in Concrete},
     6326  journal = {Cement \& Concrete Composites},
     6327  year = {2001},
     6328  volume = {23},
     6329  pages = {267--278}
     6330}
     6331@article{Vincent1991,
     6332  author = {Vincent, L. and Soille, P.},
     6333  title = {Watersheds in Digital Spaces: An Efficient Algorithm Based on Immersion Simulations},
     6334  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     6335  year = {1991},
     6336  volume = {13},
     6337  number = {6},
     6338  pages = {583--598},
     6339  month = {June}
     6340}
     6341@unpublished{Verbeek2002,
     6342  author = {Verbeek, P.W.},
     6343  title = {De Relatie van {L}arkin, {B}one and {O}ldfield (2001) en Felsberg en Sommer (2001) met het vectorgradient verhaal (PWV, submitted to ICPR2002)}
     6344}
     6345@article{Vincent1993,
     6346  author = {Vincent, L.},
     6347  title = {Morphological Grayscale Reconstruction in Image Analysis: Applications and Efficient Algorithms},
     6348  journal = {IEEE Transactions on Image Processing},
     6349  year = {1993},
     6350  volume = {2},
     6351  number = {2},
     6352  pages = {176--201},
     6353  month = {April}
     6354}
     6355@article{Gadella1997,
     6356  author = {Gadella, T.W.J. jr. and Jovin, T.M.},
     6357  title = {Fast algorithms for the analysis of single and double exponential decay curves with a background term. Application to time-resolved imaging microscopy},
     6358  journal = {Bioimaging},
     6359  year = {1997},
     6360  volume = {5},
     6361  number = {1},
     6362  pages = {19-39}
     6363}
     6364@article{Gadella1995,
     6365  author = {Gadella, T.W.J. jr. and Jovin, T.M.},
     6366  title = {Oligomerization of Epidermal Growth Factor Receptors on {A431} Cells Studied by Time-resolved Fluorescence Imaging Microscopy. {A} Stereochemical Model for Tyrosine Kinase Receptor Activation},
     6367  journal = {Journal of Cell Biology},
     6368  year = {1995},
     6369  volume = {129},
     6370  number = {6},
     6371  pages = {1543-1558}
     6372}
     6373@book{Matheron1975,
     6374  author = {Matheron, G.},
     6375  title = {Random Sets and Integral Geometry},
     6376  year = {1975},
     6377  publisher = {Wiley},
     6378  address = {New York}
     6379}
     6380@book{Weisstein1999,
     6381  author = {Weisstein, E.W.},
     6382  title = {Concise Encyclopedia of Mathematics},
     6383  year = {1999},
     6384  publisher = {CRC}
     6385}
     6386@article{Gadella1994,
     6387  author = {Gadella, T.W.J. jr. and Clegg, R.M. and Jovin, T.M.},
     6388  title = {Fluorescence lifetime imaging microscopy: Pixel-by-pixel analysis of phase-modulation data},
     6389  journal = {Bioimaging},
     6390  year = {1994},
     6391  volume = {2},
     6392  number = {3},
     6393  pages = {139-159}
     6394}
     6395@article{Kratky1949,
     6396  author = {Kratky, O. and Porod, G.},
     6397  title = {{R\"ontgenuntersuchungen gel\"oster Fadenmolek\"ule}},
     6398  journal = {Rec. Trav. Chim. Pays-Bas Belg},
     6399  year = {1949},
     6400  volume = {68},
     6401  pages = {1106-1124}
     6402}
     6403@article{Maragos1996,
     6404  author = {Maragos, Petros},
     6405  title = {Differential Morphology and Image Processing},
     6406  journal = {IEEE Transactions on Image Processing},
     6407  year = {1996},
     6408  volume = {5},
     6409  number = {6},
     6410  pages = {922-937}
     6411}
     6412@inproceedings{Leavers2000,
     6413  author = {Leavers, V.F.},
     6414  title = {Analysis of Wear Particles Using the Radon Transform},
     6415  year = {2000},
     6416  pages = {764--766},
     6417  month = {September 3-7},
     6418  editor = {Sanfeliu, A. and Villanueva, J.J. and Vanrell, M. and Alquezar, R. and Huang, T. and Serra, J. },
     6419  publisher = {IEEE Computer Society Press, Los Alamitos },
     6420  booktitle = {ICPR15, Proc. 15th Int. Conference on Pattern Recognition (Barcelona, Spain)},
     6421  annote = {key_radon}
     6422}
     6423@article{Cosgriff2005,
     6424  author = {Cosgriff, E.C. and Oxley, M.P. and Allen, L.J. and Pennycock, S.J.},
     6425  title = {The spatial resolution of imaging using core-loss spectroscopy in the scanning transmission electron microscope},
     6426  journal = {Ultramicroscopy},
     6427  year = {2005},
     6428  volume = {102},
     6429  pages = {317-326}
     6430}
     6431@phdthesis{Freeman1992,
     6432  author = {Freeman, W.T.},
     6433  title = {Steerable Filters and Local Analysis of Image Structure},
     6434  year = {1992},
     6435  school = {Massachusetts Institute of Technology}
     6436}
     6437@article{Freeman1991,
     6438  author = {Freeman, W.T. and Adelson, E.H.},
     6439  title = {The Design and Use of Steerable Filters},
     6440  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     6441  year = {1991},
     6442  volume = {13},
     6443  number = {9},
     6444  pages = {891--906},
     6445  month = {September}
     6446}
     6447@inproceedings{Lindeberg1993a,
     6448  author = {Lindeberg, T.},
     6449  title = {On Scale Selection for Differential Operators},
     6450  year = {1993},
     6451  pages = {857--866},
     6452  month = {May},
     6453  booktitle = {Proc. 8th Scandinavian Conference on Image Analysis ({Troms\o} Norway)}
     6454}
     6455@inproceedings{Lindeberg1993b,
     6456  author = {Lindeberg, T. and {G\aa rding}, J.},
     6457  title = {Shape from texture from a multi-scale perspective},
     6458  year = {1993},
     6459  address = {Berlin, Germany},
     6460  booktitle = {Proceeding of the 4th International Conference on Computer Vision}
     6461}
     6462@misc{DIPimage,
     6463  author = {Luengo Hendriks, C.L. and Rieger, B. and Ginkel, M. van and Kempen, G.M.P. van and Vliet, L.J. van},
     6464  title = {{DIPimage}: a scientific image processing toolbox for {MATLAB}},
     6465  year = {1999-},
     6466  note = {Delft University of Technology, {\tt http://www.qi.tnw.tudelft.nl/DIPlib}}
     6467}
     6468@inproceedings{Yu1998,
     6469  author = {Yu, W. and Daniilidis, K. and Sommer, G.},
     6470  title = {Rotated Wedge Averaging Method for Junction Characterization},
     6471  year = {1998},
     6472  pages = {390--395},
     6473  month = {June 23-25},
     6474  booktitle = {Proc. Computer Society Conference on Computer Vision and Pattern Recognition, CVPR'98, Santa Barbara, USA}
     6475}
     6476@book{Klotzek,
     6477  author = {Benno Klotzek},
     6478  title = {{Einf\"uhrung} in die Differentialgeometrie},
     6479  year = {1994},
     6480  publisher = {Verlag Harri Deutsch},
     6481  address = {Thun, Frankfurt am Main}
     6482}
     6483@article{Sprague2005,
     6484  author = {Sprague, B.L. and McNally, J.G.},
     6485  title = {{FRAP} analysis of binding: proper and fitting},
     6486  journal = {Trends in Cell Biology},
     6487  year = {2005},
     6488  volume = {15},
     6489  number = {2},
     6490  pages = {84-91}
     6491}
     6492@article{Maragos1994,
     6493  author = {Maragos, Petros},
     6494  title = {Morphological Systems: Slope Transforms and Max-Min Difference and Differential Equations},
     6495  journal = {Signal Processing},
     6496  year = {1994},
     6497  volume = {38},
     6498  number = {1},
     6499  pages = {57-77}
     6500}
     6501@article{Sprague2004,
     6502  author = {Sprague, B.L. and Pego, R.L. and Stavreva, D.A. and McNally, J.G.},
     6503  title = {Analysis of Binding Reactions by Fluorescence Recovery after Photobleaching},
     6504  journal = {Biophysical Journal},
     6505  year = {2004},
     6506  volume = {86},
     6507  pages = {3473-3495},
     6508  month = {June}
     6509}
     6510@phdthesis{Westerweel1993,
     6511  author = {Westerweel, J.},
     6512  title = {Digital particle image velocimetry - theory and application},
     6513  year = {1993},
     6514  address = {Delft, The Netherlands},
     6515  school = {Delft University of Technology}
     6516}
     6517@article{Marek2005,
     6518  author = {Marek, J. and Demj\'enov\'a and Tomori, Z. and Jan\'a\v{c}ek, J. and Zolotov\'a, I. and Valle, F. and Farve, M. and Dietler, G.},
     6519  title = {Interactive Measurement and Characterization of {DNA} Molecules by Analysis of {AFM} Images},
     6520  journal = {Cytometry Part A},
     6521  year = {2005},
     6522  volume = {63},
     6523  number = {2},
     6524  pages = {87-93}
     6525}
     6526@book{Smith2000,
     6527  author = {Smith, W.J.},
     6528  title = {Modern Optical Engenering},
     6529  year = {2000},
     6530  publisher = {McGraw-Hill},
     6531  address = {New York},
     6532  edition = {thrid}
     6533}
     6534@article{Nirmal1996,
     6535  author = {Nirmal, M. and Dabbausi, B.O. and Bawendi, M.G. and Macklin, J.J. and Trautman, J.K. and Harris, T.D. and Brus, L.E.},
     6536  title = {Fluorescience intermittency in single cadmium selenide nanocrystals},
     6537  journal = {Nature},
     6538  year = {1996},
     6539  volume = {383},
     6540  number = {6603},
     6541  pages = {802-805}
     6542}
     6543@article{Grillo2006,
     6544  author = {Grillo, V. and Carlino, E.},
     6545  title = {A novel method for focus assessment in atomic resolution {STEM HAADF} experiments},
     6546  journal = {Ultramicrosocpy},
     6547  year = {2006},
     6548  volume = {106},
     6549  pages = {603-613}
     6550}
     6551@article{Heine1961,
     6552  author = {Heine, S. von and Kratky, O. and Porod, G. and Schmitz, P.J.},
     6553  title = {Eine verfeinerte {Theorie} der {R\"ontgenkleinwinkelstreuung} des {verkn\"auelten} {Fadenmolek\"uls} und ihre {Anwendung} auf {Cellulosenitrat} in {L\"o}sung},
     6554  journal = {Macromolecular Chemistry and Physics},
     6555  year = {1961},
     6556  volume = {44},
     6557  number = {1},
     6558  pages = {682-726}
     6559}
     6560@incollection{Hilditch1969,
     6561  author = {Hilditch, C.J.},
     6562  title = {Linear skeletons from square cupboards},
     6563  year = {1969},
     6564  pages = {404--420},
     6565  editor = {{Meltzer B. and Mitchie D.}},
     6566  publisher = {University Press Edinburgh},
     6567  booktitle = {Machine Intelligence}
     6568}
     6569@article{Subramaniam2003,
     6570  author = {Subramaniam, V. and Hanley, Q.S. and Clayton, A.H.A. and Jovin, T.M.},
     6571  title = {Photophysics of green and red fluorescent proteins: some implications for quantitative microscopy},
     6572  journal = {Methods in Enzymology.},
     6573  year = {2003},
     6574  volume = {360},
     6575  pages = {178-201}
     6576}
     6577@article{Brink1998a,
     6578  author = {Brink, J. and Sherman, M.B. and Berrniman, J. and Chiu, W.},
     6579  title = {Evaluation of charing on macromolecules in electron mircoscopy},
     6580  journal = {Ultamicroscopy},
     6581  year = {1998},
     6582  volume = {72},
     6583  pages = {41-52}
     6584}
     6585@inproceedings{Ginkel1997,
     6586  author = {Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van},
     6587  title = {Orientation Selectivity for Orientation Estimation},
     6588  year = {1997},
     6589  volume = {I},
     6590  pages = {533--537},
     6591  month = {June 9-11},
     6592  booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)}
     6593}
     6594@mastersthesis{Ginkel1995,
     6595  author = {Ginkel, M. van},
     6596  title = {Diffusion Generated Scale-space for Blob Analysis},
     6597  year = {1995},
     6598  month = {August},
     6599  address = {Delft, The Netherlands},
     6600  school = {Delft University of Technology}
     6601}
     6602@inproceedings{Ginkel1998,
     6603  author = {Ginkel, M. van and Verbeek, P.W. and van Vliet, L.J.},
     6604  title = {Curvature Estimation for Overlapping Curved Patterns using Orientation Space},
     6605  year = {1998},
     6606  pages = {173--178},
     6607  month = {June 9-11},
     6608  editor = {Haar Romeny, B. ter and Epema, D.H.J. and Tonino, J.F.M.},
     6609  booktitle = {Proceedings of the third annual conference of the Advanced School for Computing and Imaging (Lommel, Belgium)}
     6610}
     6611@inproceedings{Ginkel1999,
     6612  author = {Ginkel, M. van and Weijer, J. van de and Verbeek, P.W. and Vliet, L.J. van},
     6613  title = {Curvature Estimation from Orientation Fields},
     6614  year = {1999},
     6615  pages = {545--551},
     6616  month = {June 7-11},
     6617  editor = {Ersboll, B.K. and Johansen, P.},
     6618  booktitle = {SCIA'99, Proc. 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland)},
     6619  organization = {Pattern Recognition Society of Denmark, Lyngby}
     6620}
     6621@inproceedings{Bakker1999a,
     6622  author = {Bakker, P. and Verbeek, P.W. and Vliet, L.J. van},
     6623  title = {Edge preserving orientation adaptive filtering},
     6624  year = {1999},
     6625  pages = {207--213},
     6626  editor = {Boasson, M. and Kaandorp, J.A. and Tonino, J.F.M. and Vosselman, M.G.},
     6627  booktitle = {ASCI'99, Proc. 5th Annual Conference of the Advanced School for C omputing and Imaging (Heijen, The Netherlands)},
     6628  organization = {ASCI, Delft}
     6629}
     6630@article{Mecke1996,
     6631  author = {Mecke, K.R.},
     6632  title = {Morphological Characterization of Patterns in Reaction-Diffusion Systems},
     6633  journal = {Physical Review {E}},
     6634  year = {1996},
     6635  volume = {53},
     6636  number = {5},
     6637  pages = {4794--4800},
     6638  month = {May}
     6639}
     6640@article{Lawton1992,
     6641  author = {Lawton, W.M.},
     6642  title = {Multidimensional Chirp Algorithms for Computing {Fourier} Transforms},
     6643  journal = {IEEE Transactions on Image Processing},
     6644  year = {1992},
     6645  volume = {1},
     6646  number = {3},
     6647  pages = {429--431},
     6648  month = {July},
     6649  annote = {key_fft}
     6650}
     6651@article{Pratt1972,
     6652  author = {Pratt, W.K.},
     6653  title = {Generalized {Wiener} filtering computation techniques},
     6654  journal = {IEEE Trans. Comput.},
     6655  year = {1972},
     6656  volume = {C-21},
     6657  pages = {297--303}
     6658}
     6659@article{Zhu2004,
     6660  author = {Zhu, Y. and Carragher, B. and Glaeser, R.M. and Fellmann, D. and Bajaj, C. and Bern, M. and Mouche, F. and Haas, F. de and Hall, R.J. and Kriegman, D.J. and Ludtke, S.J. and Mallick, S.P. and Penczek, P.A. and Roseman, A.M. and Sigworth, F.J. and Volkmann, N. and Potter, C.S.},
     6661  title = {Automatic particle selection: results of a comparative study},
     6662  journal = {Journal of Structural Biology},
     6663  year = {2004},
     6664  volume = {145},
     6665  pages = {3-14}
     6666}
     6667@article{Breen1996a,
     6668  author = {Breen, E. J. and Jones, R.},
     6669  title = {Attribute Openings, Thinnings, and Granulometries},
     6670  journal = {Computer Vision and Image Understanding},
     6671  year = {1996},
     6672  volume = {64},
     6673  number = {3},
     6674  pages = {377-389}
     6675}
     6676@article{Funaro2003,
     6677  author = {Funaro, M. and Oja, E. and Valpula, H.},
     6678  title = {Independent component analysis for artefact separation in astrophysical images},
     6679  journal = {Neural Networks},
     6680  year = {2003},
     6681  volume = {16},
     6682  number = {4},
     6683  pages = {469-478}
     6684}
     6685@article{Lehmann1997,
     6686  author = {Lehmann, T.M. and Kaser, A. and Repges, R.},
     6687  title = {A Simple Parametric Equation for Pseudocoloring Grey Scale Images Keeping their Original Brightness Progression},
     6688  journal = {Image and Vision Computing},
     6689  year = {1997},
     6690  volume = {15},
     6691  pages = {251--257}
     6692}
     6693@inproceedings{Michaelis1994,
     6694  author = {Michaelis, M. and Sommer, G.},
     6695  title = {Junction Classification by Multiple Orientation Detection},
     6696  year = {1994},
     6697  pages = {101--108},
     6698  month = {May},
     6699  editor = {Eklundh, Jan-Olof},
     6700  address = {Stockholm, Sweden},
     6701  booktitle = {ECCV'94, Third European Conference on Computer Vision}
     6702}
     6703@article{Ginneken2000,
     6704  author = {Ginneken, B. van and Haar Romeny, B.M. ter},
     6705  title = {Applications of Locally Orderless Images},
     6706  journal = {Journal of Visual Communication and Image Representation},
     6707  year = {2000},
     6708  volume = {11},
     6709  number = {2},
     6710  pages = {196--208}
     6711}
     6712@article{Michaelis1995,
     6713  author = {Michaelis, M. and Sommer, G.},
     6714  title = {A Lie Group Approach to Steerable Filters},
     6715  journal = {Pattern Recognition Letters},
     6716  year = {1995},
     6717  volume = {16},
     6718  pages = {1165--1174}
     6719}
     6720@article{Brink1998,
     6721  author = {Brink, J. and Gross, H. and Tittmann, P. and Sherman, M.B. and Chiu, W.},
     6722  title = {Reduction of charging in protein electron cryomicroscopy},
     6723  journal = {Journal of Microscopy},
     6724  year = {1998},
     6725  volume = {191},
     6726  number = {1},
     6727  pages = {67-73}
     6728}
     6729@article{Cowley1986,
     6730  author = {Cowley, J.M. and Mankos, M. and Scheinfein, M.R.},
     6731  title = {Greatly defocused, point-projection, off-axis electron holographyy},
     6732  journal = {Ultramicroscopy},
     6733  year = {1966},
     6734  volume = {63},
     6735  pages = {133-147}
     6736}
     6737@article{Hutchison2005,
     6738  author = {Hutchison, J.L. and Titchmarsh, J.M. and Cockayne, D.J.H. and Doole, R.C. and Hetherington, C.J.D. and Kirkland, A.I. and Sawada, H.},
     6739  title = {A versatile double aberration-corrected, energy filtered {HREM/STEM} for materials science},
     6740  journal = {Ultramicroscopy},
     6741  year = {2005},
     6742  volume = {103},
     6743  pages = {7-15}
     6744}
     6745@article{Bergholm1987,
     6746  author = {Bergholm, F.},
     6747  title = {Edge Focusing},
     6748  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     6749  year = {1987},
     6750  volume = {9},
     6751  number = {6},
     6752  pages = {726--741},
     6753  month = {November}
     6754}
     6755@article{Axelrod1989,
     6756  author = {Axelrod, D.},
     6757  title = {Fluorescence Polarization Microscopy},
     6758  journal = {Methods in Cell Biology},
     6759  year = {1989},
     6760  volume = {30},
     6761  pages = {333-352}
     6762}
     6763@article{Heideman1992,
     6764  author = {Heideman, M.T.},
     6765  title = {Computation of an Odd-Length DCT from a Real-Valued DFT of the Same Length},
     6766  journal = {IEEE Transactions on Signal Processing},
     6767  year = {1992},
     6768  volume = {40},
     6769  number = {1},
     6770  pages = {54--61},
     6771  month = {January},
     6772  annote = {key_fft}
     6773}
     6774@article{Nagao1979,
     6775  author = {Nagao, M. and Matsuyama, T.},
     6776  title = {Edge Preserving Smoothing},
     6777  journal = {Computer Graphics and Image Processing},
     6778  year = {1979},
     6779  volume = {9},
     6780  pages = {394--407}
     6781}
     6782@article{Aguado2000,
     6783  author = {Aguado, A.S. and Montiel, E. and Nixon, M.S.},
     6784  title = {Bias Error Analysis of the Generalised {Hough} Transform},
     6785  journal = {Journal of Mathematical Imaging and Vision},
     6786  year = {2000},
     6787  volume = {12},
     6788  number = {1},
     6789  pages = {25--42}
     6790}
     6791@article{Lin2000,
     6792  author = {Lin, C.L. and Miller, J.D.},
     6793  title = {Pore Structure and network analysis of filter cake},
     6794  journal = {Chemical Engineering Journal},
     6795  year = {2000},
     6796  volume = {80},
     6797  month = {221-231}
     6798}
     6799@phdthesis{Lin2003,
     6800  author = {Lin, Q.},
     6801  title = {Enhancement, Extraction, and Visualization of {3D} Volume Data},
     6802  year = {2003},
     6803  school = {{Link\"oping University}, Sweden}
     6804}
     6805@article{Jackway1996,
     6806  author = {Jackway, Paul T. and Deriche, Mohamed},
     6807  title = {Scale-Space Properties of the Multiscale Morphological Dilation-Erosion},
     6808  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     6809  year = {1996},
     6810  volume = {18},
     6811  number = {1},
     6812  pages = {38--51},
     6813  month = {January}
     6814}
     6815@article{Sederberg1984,
     6816  author = {Sederberg, T.W. and Anderson, D.C. and Goldman, R.N.},
     6817  title = {Implicit Representation of Parametric Curves and Surfaces},
     6818  journal = {Computer Vision, Graphics, and Image Processing},
     6819  year = {1984},
     6820  volume = {28},
     6821  number = {1},
     6822  pages = {72--84}
     6823}
     6824@article{Jackway1998,
     6825  author = {Jackway, Paul T.},
     6826  title = {On the Scale-Space Theorem of Chen and Yan},
     6827  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     6828  year = {1998},
     6829  volume = {20},
     6830  number = {3},
     6831  pages = {351-352}
     6832}
     6833@article{Zimmermann2002,
     6834  author = {Zimmermann, T. and Rietdorf, J. and Girod, A. and Georget, V. and Pepperkok, R.},
     6835  title = {Spectral imaging and linear un-mixing enables improved {FRET} effciency with a novel {GFP2-YFP FRET} pair},
     6836  journal = {FEBS Letters},
     6837  year = {2002},
     6838  volume = {531},
     6839  number = {2},
     6840  pages = {245-249}
     6841}
     6842@article{Zimmermann2003,
     6843  author = {Zimmermann, T. and Rietdorf, J. and Pepperkok, R.},
     6844  title = {Spectral imaging and its application in live cell microscopy},
     6845  journal = {FEBS Letters},
     6846  year = {2003},
     6847  volume = {546},
     6848  number = {1},
     6849  pages = {87-92}
     6850}
     6851@article{Fischl1999,
     6852  author = {Fischl, B. and Schwartz, E.L.},
     6853  title = {Adaptive Nonlocal Filtering: A Fast Alternative to Anisotropic Diffusion for Image Enhancement},
     6854  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     6855  year = {1999},
     6856  volume = {VOL. 21},
     6857  number = {NO. 1}
     6858}
     6859@article{Reed1990,
     6860  author = {Reed, T.R. and Wechsler, H.},
     6861  title = {Segmentation of Textured Images and Gestalt Organization Using Spatial/Spatial-Frequency Representations},
     6862  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     6863  year = {1990},
     6864  volume = {12},
     6865  number = {1},
     6866  pages = {1--12},
     6867  month = {January}
     6868}
     6869@article{Reed1999,
     6870  author = {Reed, M.G. and Howard, C.V.},
     6871  title = {Stereological Estimation of Covariance using Linear Dipole Probes},
     6872  journal = {Journal of Microscopy},
     6873  year = {1999},
     6874  volume = {195, Pt 2},
     6875  pages = {96--103},
     6876  month = {August}
     6877}
     6878@article{Hell1994a,
     6879  author = {Hell, S. W. and Wichmann, J.},
     6880  title = {Breaking the diffraction limit resolution by stimulated emission: stimulated-emission-depletion microscopy},
     6881  journal = {Optics Letters},
     6882  year = {1994},
     6883  volume = {19},
     6884  number = {11},
     6885  pages = {780-783}
     6886}
     6887@article{Nicholson2001,
     6888  author = {Nicholson, W.V. and Glaser, R.M.},
     6889  title = {Review: Automatic Particle Detection in Electron Microscopy},
     6890  journal = {Journal of Structural Biology},
     6891  year = {2001},
     6892  volume = {133},
     6893  pages = {90-101}
     6894}
     6895@inproceedings{Glas2001,
     6896  author = {Glas, M. van der and Vos, F.M. and Vossepoel, A.M.},
     6897  title = {Assessment of Center of Rotation of the Glenohumeral Joint by a Modified {H}ough Transform},
     6898  year = {2001},
     6899  volume = {2208},
     6900  editor = {Niessen, W.J. and Viergever, M.A.},
     6901  series = {Lecture Notes on Computer Science},
     6902  booktitle = {4th International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001, Utrecht, The Netherlands},
     6903  annote = {key_radon}
     6904}
     6905@article{Danielsson2001,
     6906  author = {Danielsson, P.-E. and Lin, Q. and Ye, Q.-Z.},
     6907  title = {Efficient Detection of Second-Degree Variations in {2D} and {3D} Images},
     6908  journal = {Journal of Visual Communication and Image Representation},
     6909  year = {2001},
     6910  volume = {12},
     6911  pages = {255--305}
     6912}
     6913@article{Dirac1927,
     6914  author = {Dirac, P.},
     6915  title = {The Physical Interpretation of the Quantum Dynamics},
     6916  journal = {Proceedings of the Royal Society of London},
     6917  year = {1927},
     6918  volume = {A113},
     6919  pages = {621-641}
     6920}
     6921@techreport{Danielsson2000,
     6922  author = {Danielsson,P.-E. and Lin, Q.},
     6923  title = {A New Shape Space for Second Order 3D-Variations},
     6924  year = {2000},
     6925  month = {October},
     6926  institution = {{Link\"oping} University, Sweden},
     6927  note = {LiTH-ISY-R-2299}
     6928}
     6929@article{Otten1993,
     6930  author = {Otten, M.T. and Coene, W.M.J.},
     6931  title = {High-resolution imaging on a field emission {TEM}},
     6932  journal = {Ultramicroscopy},
     6933  year = {1993},
     6934  volume = {48},
     6935  pages = {77-91}
     6936}
     6937@article{Nelson2006,
     6938  author = {Nelson, P.C. and Zurla, C. and Brogioli, D. and Beausang, J.F. and Finzi, L. and Dunlap, D.},
     6939  title = {Tethered Particle Motion as a Diagnostic of {DNA} Tether Length},
     6940  journal = {Journal of Physical Chemistry B},
     6941  year = {2006}
     6942}
     6943@article{Ballester2001,
     6944  author = {Ballerster, C. and Bertalmio, M. and Caselles, V. and Sapiro, G. and Verdera, J.},
     6945  title = {Filling-In by Joint Interpolation of Vector Fields and Gray Levels},
     6946  journal = {IEEE Transactions on Image Processing},
     6947  year = {2001},
     6948  volume = {10},
     6949  number = {8},
     6950  pages = {1200--1211},
     6951  month = {August}
     6952}
     6953@inbook{Kohonen1995a,
     6954  author = {Kohonen, T.},
     6955  title = {Self-Organizing Maps},
     6956  year = {1995},
     6957  volume = {30},
     6958  publisher = {Springer-Verlag},
     6959  series = {Springer Series in Information Sciences},
     6960  chapter = {5.8--5.10}
     6961}
     6962@article{Saff1997,
     6963  author = {Saff, E.B. and Kuijlaars, A.B.J.},
     6964  title = {Distributing Many Points on a Sphere},
     6965  journal = {the Mathematical Intelligencer},
     6966  year = {1997},
     6967  volume = {19},
     6968  number = {1},
     6969  pages = {5--11}
     6970}
     6971@article{Johansen2000,
     6972  author = {Johansen, P. and Nielsen, M. and Olsen, O.F.},
     6973  title = {Branch Points in One-Dimensional {Gaussian} Scale Space},
     6974  journal = {Journal of Mathematical Imaging and Vision},
     6975  year = {2000},
     6976  volume = {13},
     6977  number = {3},
     6978  pages = {193--203}
     6979}
     6980@techreport{Lieshout1997,
     6981  author = {Lieshout, M.N.M. van},
     6982  title = {Size Distributions in Stochastic Geometry},
     6983  year = {1997},
     6984  institution = {CWI, Amsterdam},
     6985  note = {PNA-R9715}
     6986}
     6987@article{Raven1998,
     6988  author = {Raven, C.},
     6989  title = {Numerical Removal of Ring Artefacts in Microtomography},
     6990  journal = {Review of Scientific Instruments},
     6991  year = {1998},
     6992  volume = {69},
     6993  number = {8},
     6994  pages = {2978--2980}
     6995}
     6996@book{Spivak1965,
     6997  author = {Spivak, M.},
     6998  title = {Calculus on Manifolds},
     6999  year = {1965},
     7000  publisher = {Perseus Books},
     7001  address = {Cambridge, MA}
     7002}
     7003@article{Prabhat2004,
     7004  author = {Prabhat, P. and Ram, S. and Ward, E.S. and Ober, R.J.},
     7005  title = {Simultaneous imaging of different focal planes in fluorescence microscopy for the study of cellular dynamics in three dimensions},
     7006  journal = {IEEE Transactions on Nanobioscience},
     7007  year = {2004},
     7008  volume = {3},
     7009  number = {4},
     7010  pages = {237-242}
     7011}
     7012@article{Meijster2002,
     7013  author = {Meijster, Arnold and Wilkinson, Michael H.F.},
     7014  title = {A Comparison of Algorithms for Connected Set Openings and Closings},
     7015  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     7016  year = {2002},
     7017  volume = {24},
     7018  number = {4},
     7019  pages = {484--494},
     7020  month = {April}
     7021}
     7022@article{Venkatesh1990,
     7023  author = {Venkatesh, S. and Owens, R.},
     7024  title = {On the Classification of Image Features},
     7025  journal = {Pattern Recognition Letters},
     7026  year = {1990},
     7027  volume = {11},
     7028  pages = {339--349},
     7029  month = {May}
     7030}
     7031@article{Nummiaro2002,
     7032  author = {Nummiaro, K. and Koller-Meier, E. and Gool, L. van},
     7033  title = {An Adaptive Color-Based Particle Filter},
     7034  journal = {Image and Vision Computing},
     7035  year = {2003},
     7036  volume = {21},
     7037  number = {1},
     7038  pages = {99-110}
     7039}
     7040@mastersthesis{Asselt1997,
     7041  author = {Asselt, R.J. van},
     7042  title = {Line and Edge Characterisation Using Mallat Wavelets},
     7043  year = {1997},
     7044  address = {Delft},
     7045  school = {Pattern Recognition Group, Faculty of Applied Physics, Delft University of Technology}
     7046}
     7047@article{Grecco2005,
     7048  author = {Grecco, H. and Lidke, K.A. and Heintzmann, R. and Lidke, D.S. and Spagnuolo, C. and Martinez, O.E. and Jares-Erijman, E.A. and Jovin, T.M.},
     7049  title = {Ensemble and single particle photophysical properties (two-photon excitation, anisotropy, {FRET}, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells},
     7050  journal = {Microscopy Research and Technique},
     7051  year = {2004},
     7052  volume = {65},
     7053  number = {3},
     7054  pages = {169-179}
     7055}
     7056@article{Goshtasby1994,
     7057  author = {Goshtasby, A.},
     7058  title = {On Edge Focusing},
     7059  journal = {Image and Vision Computing},
     7060  year = {1994},
     7061  volume = {12},
     7062  number = {4},
     7063  pages = {247--256},
     7064  month = {May}
     7065}
     7066@article{Kadyrov2001,
     7067  author = {Kadyrov, A. and Petrou, M. },
     7068  title = {The Trace transform and its applications },
     7069  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     7070  year = {2001},
     7071  volume = {23},
     7072  number = {8},
     7073  annote = {key_radon}
     7074}
     7075@misc{Vliet2003,
     7076  author = {Vliet, L.J. van and Rieger, B.},
     7077  year = {2003},
     7078  month = {May},
     7079  howpublished = {private communications}
     7080}
     7081@article{Harscher1996,
     7082  author = {Harscher, A. and Lichte, H.},
     7083  title = {Experimental study of amplitude and phase detection limits in electron holography},
     7084  journal = {Ultramicroscopy},
     7085  year = {1996},
     7086  volume = {64},
     7087  pages = {57-66}
     7088}
     7089@inproceedings{Vliet2004,
     7090  author = {Vliet, L.J. van},
     7091  title = {Robust Local Max-Min Filters by Normalized Power-Weighted Filtering},
     7092  year = {2004},
     7093  pages = {696-699},
     7094  month = {Cambridge, UK, August 23-26},
     7095  editor = {Kittler,J. and Petrou, M. and Nixon, M.},
     7096  publisher = {IEEE Computer Society Press},
     7097  address = {Los Alamitos},
     7098  booktitle = {ICPR17, Proceedings 17th International Conference on Pattern Recognition}
     7099}
     7100@inproceedings{Knutsson1983b,
     7101  author = {Knutsson, H. and Granlund, G.H.},
     7102  title = {Texture Analysis using Two-Dimensional Quadrature Filters},
     7103  year = {1983},
     7104  month = {October},
     7105  address = {Pasadena},
     7106  booktitle = {IEEE Computer Society Workshop on Computer Architecture for Pattern Analysis and Image Database Management}
     7107}
     7108@article{Knutsson1983a,
     7109  author = {Knutsson, H. and Wilson, R. and Granlund, G.H.},
     7110  title = {Anisotropic Non-Stationary Image Estimation and its Applications --- {P}art {II}: {P}redictive Image Coding},
     7111  journal = {IEEE Transactions on Communications},
     7112  year = {1983},
     7113  volume = {31},
     7114  number = {3},
     7115  pages = {398--406},
     7116  month = {March}
     7117}
     7118@article{Vakman1996,
     7119  author = {Vakman, D.},
     7120  title = {On the Analytic Signal, the {Teager--Kaiser} Energy Algorithm, and Other Methods for Defining Amplitude and Frequency},
     7121  journal = {IEEE Transactions on Signal Processing},
     7122  year = {1996},
     7123  volume = {44},
     7124  number = {4},
     7125  pages = {791--797},
     7126  month = {April}
     7127}
     7128@article{Jepson1991,
     7129  author = {Jepson, A.D. and Fleet, D.J.},
     7130  title = {Phase Singularities in Scale-space},
     7131  journal = {Image and Vision Computing},
     7132  year = {1991},
     7133  volume = {9},
     7134  number = {5},
     7135  pages = {338--343},
     7136  month = {October}
     7137}
     7138@article{Hanley1999,
     7139  author = {Hanley, Q.S. and Verveer, P.J. and Jovin, T.M.},
     7140  title = {Spectral imaging in a programmable array microscope by Hadamard transform fluorescence spectroscopy},
     7141  journal = {Applied Spectroscopy},
     7142  year = {1999},
     7143  number = {53},
     7144  pages = {1-10}
     7145}
     7146@inproceedings{Jepson1990,
     7147  author = {Jepson, A.D. and Fleet, D.J.},
     7148  title = {Scale-Space Singularities},
     7149  year = {1990},
     7150  pages = {50--55},
     7151  editor = {O. Faugeras},
     7152  publisher = {Springer-Verlag},
     7153  booktitle = {Computer Vision -- ECCV90. Proceedings, 1990}
     7154}
     7155@article{Jones1996,
     7156  author = {Jones, Ronald and Soille, Pierre},
     7157  title = {Periodic Lines: Definition, Cascades, and Application to Granulometries},
     7158  journal = {Pattern Recognition Letters},
     7159  year = {1996},
     7160  volume = {17},
     7161  number = {10},
     7162  pages = {1057--1063}
     7163}
     7164@inproceedings{Rutovitz1968,
     7165  author = {Rutovitz, D.},
     7166  title = {Datastructures for operations on digital images},
     7167  year = {1968},
     7168  pages = {105--133},
     7169  editor = {Cheng, G.C. and Ledley, R.S. and Pollock, D.K. and Rosenfeld, A.},
     7170  publisher = {Thompson},
     7171  address = {Washington, DC},
     7172  booktitle = {Pictorial Pattern Recognition}
     7173}
     7174@inproceedings{Lucas1981,
     7175  author = {Lucas, B.D. and Kanade, T.},
     7176  title = { An Iterative Image Registration Technique with an Application to Stereo Vision},
     7177  year = {1981},
     7178  pages = {674--679},
     7179  month = {August},
     7180  editor = {P.J. Hayes},
     7181  publisher = {William Kaufmann},
     7182  address = {Vancouver, B.C., Canada},
     7183  booktitle = {Proceedings of the Seventh Int. Conf. on Artificial Intelligence}
     7184}
     7185@phdthesis{Toft1996,
     7186  author = {Toft, P.},
     7187  title = {The Radon Transform - Theory and Implementation},
     7188  year = {1996},
     7189  month = {June},
     7190  address = {Department of Mathematical Modeling, Denmark},
     7191  school = {Technical University of Denmark},
     7192  annote = {key_radon}
     7193}
     7194@article{Sapiro1993,
     7195  author = {Sapiro, G. and Kimmel, R. and Shaked, D. and Kimia, B. and Bruckstein, A.M.},
     7196  title = {Implementing Continuous-Scale Morphology via Curve Evolution},
     7197  journal = {Pattern Recognition},
     7198  year = {1993},
     7199  volume = {26},
     7200  number = {9},
     7201  pages = {1363--1372}
     7202}
     7203@article{Kanmani1993,
     7204  author = {Kanmani, S. and Babu Rao, C. and Raj, B.},
     7205  title = {On the Computation of the Minkowski Dimension using Morphological Operations},
     7206  journal = {Journal of Microscopy},
     7207  year = {1993},
     7208  volume = {170, Pt 1},
     7209  pages = {81--85},
     7210  month = {April}
     7211}
     7212@article{Zhao2004,
     7213  author = {Zhao, Q. and {\"Ofverstedt}, L.-G. and Skoglund, U. and Isaksson, L.A.},
     7214  title = {Morphological variation of individual Escherichia coli {50S} ribosomal subunits in situ, as revealed by cryo-electron tomography},
     7215  journal = {Experimental Cell Research},
     7216  year = {2004},
     7217  volume = {300},
     7218  pages = {190-201}
     7219}
     7220@article{Yeong1988a,
     7221  author = {Yeong, C.L.Y. and Torquato, S.},
     7222  title = {Reconstructing random media. {II}. Three-dimensional media from two-dimensional cuts},
     7223  journal = {Physical Review E},
     7224  year = {1998},
     7225  volume = {58},
     7226  number = {1},
     7227  month = {July}
     7228}
     7229@article{Geraets1998,
     7230  author = {Geraets, W.G.M. and Stelt, P.F. van der and Lips, P. and Ginkel, F.C. van},
     7231  title = {The Radiographic Trabecular Pattern of Hips in Patients with Hip Fractures and in Elderly Control Subjects},
     7232  journal = {Bone},
     7233  year = {1998},
     7234  volume = {22},
     7235  number = {2},
     7236  pages = {165--173}
     7237}
     7238@article{Rodriguez2000,
     7239  author = {Rodriguez-Sanchez, R. and Garcia, J.A. and Fdez-Valdivia, J. and Fdez-Valdivia, X.R.},
     7240  title = {Origins of Illusory Percepts in Digital Images},
     7241  journal = {Pattern Recognition},
     7242  year = {2000},
     7243  volume = {33},
     7244  pages = {2007--2017}
     7245}
     7246@book{Lenz1990,
     7247  author = {Lenz, R.},
     7248  title = {Group Theoretical Methods in Image Processing},
     7249  year = {1990},
     7250  publisher = {Springer-Verlag}
     7251}
     7252@phdthesis{Geraets1994,
     7253  author = {Geraets, W.G.M.},
     7254  title = {Computer Aided Analysis of the Radiographic Trabecular Pattern},
     7255  year = {1994},
     7256  address = {Amsterdam, The Netherlands},
     7257  school = {Vrije Universiteit Amsterdam}
     7258}
     7259@article{Grossmann1984,
     7260  author = {Grossmann, A. and Morlet, J.},
     7261  title = {Decomposition of {Hardy} functions into square integrable wavelets of constant shape},
     7262  journal = {SIAM Journal of Mathematics},
     7263  year = {1984},
     7264  volume = {15},
     7265  pages = {723--736}
     7266}
     7267@misc{Poynton1999,
     7268  author = {Poynton, C.},
     7269  title = {Frequently Asked Questions about Color},
     7270  year = {1999},
     7271  howpublished = {{\tt http://www.inforamp.net/~poynton}}
     7272}
     7273@book{Matheron1967,
     7274  author = {Matheron, G.},
     7275  title = {Elements pour une Theorie des Milieux Poreux},
     7276  year = {1967},
     7277  publisher = {Masson},
     7278  address = {Paris}
     7279}
     7280@article{Xu2003,
     7281  author = {Xu, G. and Bajaj, C.L.},
     7282  title = {Curvature Computations of 2-manifolds in $\sR^k$},
     7283  journal = {Journal of Computational Mathematics},
     7284  year = {2003},
     7285  volume = {21},
     7286  number = {5},
     7287  pages = {681 -- 688}
     7288}
     7289@article{Xu2001,
     7290  author = {Xu, J.},
     7291  title = {Efficient morphological shape representation with overlapping disk components },
     7292  journal = {IEEE Transactions on Image Processing},
     7293  year = {2001},
     7294  volume = {10},
     7295  number = {9},
     7296  pages = {1346 -1356}
     7297}
     7298@article{Wilson1984,
     7299  author = {Wilson, R. and Granlund, G.H.},
     7300  title = {The Uncertainty Principle in Image Processing},
     7301  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     7302  year = {1984},
     7303  volume = {6},
     7304  number = {6},
     7305  pages = {758--767},
     7306  month = {November}
     7307}
     7308@article{Daniels1952,
     7309  author = {Daniels, H.E.},
     7310  title = {The statistical theory of stiff chains},
     7311  journal = {Proceedings of the Royal Society Edinburgh A},
     7312  year = {1952},
     7313  volume = {63},
     7314  pages = {290-311}
     7315}
     7316@article{Wilson1988,
     7317  author = {Wilson, R. and H. Knutsson, H.},
     7318  title = {Uncertainty and Inference in the Visual System},
     7319  journal = {IEEE Transactions on Systems, Man and Cybernetics},
     7320  year = {1988},
     7321  volume = {18},
     7322  number = {2},
     7323  pages = {305--312},
     7324  month = {March/April}
     7325}
     7326@article{Axelrod1976,
     7327  author = {Axelrod, D. and Koppel, D.E. and Schlesinger, J. and Elson, E. and Webb, W.W.},
     7328  title = {Mobility measurement by analysis of fluorescence photobleaching recovery kinetics},
     7329  journal = {Biophysical Journal},
     7330  year = {1976},
     7331  volume = {16},
     7332  pages = {1055-1069}
     7333}
     7334@article{Benes2000,
     7335  author = {Bene{\v s}, V. and Hlawiczkov? M. and Volen?, K.},
     7336  title = {Stereological Estimation of Integral Mixed Curvature with Application},
     7337  journal = {Journal of Microscopy},
     7338  year = {2000},
     7339  volume = {200, Pt 1},
     7340  pages = {26--31},
     7341  month = {October}
     7342}
     7343@inproceedings{Bertalmio2000,
     7344  author = {Bertalmio, M. and Sapiro, G. and Caselles, V. and Ballester, C.},
     7345  title = {Image Inpainting},
     7346  year = {2000},
     7347  month = {July},
     7348  address = {New Orleans, USA},
     7349  booktitle = {Proceedings of SIGGRAPH}
     7350}
     7351@article{Axelrod1979,
     7352  author = {Axelrod, D.},
     7353  title = {Carbocyanine dye orientation in red cell membrane studied by microscopic fluorescence polarization},
     7354  journal = {Biophysical Journal},
     7355  year = {1979},
     7356  volume = {26},
     7357  pages = {557-574}
     7358}
     7359@article{Tang1998,
     7360  author = {Tang, C.K. and Medioni, G.},
     7361  title = {Inference of Integrated Surface, Curve, and Junction Descriptions From Sparse 3D Data},
     7362  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     7363  year = {1998},
     7364  volume = {20},
     7365  number = {11},
     7366  pages = {1206--1223}
     7367}
     7368@book{Fukunaga1972,
     7369  author = {Fukunaga, K.},
     7370  title = {Introduction to Statistical Pattern Recognition},
     7371  year = {1972},
     7372  publisher = {Academic Press},
     7373  address = {New York}
     7374}
     7375@article{Ahmed1974,
     7376  author = {Ahmed, N. and Natarajan, T. and Rao, K.R.},
     7377  title = {Discrete cosine transform},
     7378  journal = {IEEE Transactions on Computers},
     7379  year = {1974},
     7380  volume = {23},
     7381  pages = {88--93},
     7382  month = {January},
     7383  annote = {key_fft}
     7384}
     7385@article{Topf2005,
     7386  author = {Topf, M. and Baker, M.L. and John, B. and Chiu, W. and Sali, A.},
     7387  title = {Structural characterization of components of protein assemblies 3 by comparative modeling and electron cryo-microscopy},
     7388  journal = {Journal of Structural Biology},
     7389  year = {2005},
     7390  volume = {149},
     7391  pages = {191-203}
     7392}
     7393@book{Born1959,
     7394  author = {Born, M. and Wolf, E.},
     7395  title = {Principles of Optics},
     7396  year = {1980, 1977},
     7397  publisher = {Pergamon Press},
     7398  edition = {6th}
     7399}
     7400@book{Landau1969,
     7401  author = {Landau, L.D. and Lifshitz,E.M.},
     7402  title = {Statistical Physics, Part 1},
     7403  year = {1969},
     7404  publisher = {Pergamon Press},
     7405  edition = {second}
     7406}
     7407@article{Deegan2000,
     7408  author = {Deegan, R.D. and Bakajin, O. and Dupont, T.F. and Huber, G. and Nagel, S.R. and Witten, T.A.},
     7409  title = {Contact line deposits in an evaporating drop},
     7410  journal = {Physical Review E},
     7411  year = {2000},
     7412  volume = {62},
     7413  number = {1},
     7414  pages = {756--765}
     7415}
     7416@article{Abbe1873,
     7417  author = {Abbe, E.},
     7418  title = {{Beitr\"age} zur Theorie des Mikroskopes und der mikroskopischen Wahrnehmung},
     7419  journal = {Arch Mikrosk Anat},
     7420  year = {1873},
     7421  volume = {9},
     7422  pages = {413-468}
     7423}
     7424@article{Rocheleau2003,
     7425  author = {Rocheleau, J.V. and Edidin, M. and Piston, D.W.},
     7426  title = {Intrasequence {GFP} in Class {I MHC} Molecules, a Rigid Probe for Fluorescence Anisotropy Measurements of the Membrane Environment},
     7427  journal = {Biophysical Journal},
     7428  year = {2003},
     7429  volume = {84},
     7430  pages = {4078-4086}
     7431}
     7432@article{Hyvarinen1999,
     7433  author = {{Hyv\"arinen}, A.},
     7434  title = {Fast and Robust Fixed-Point Algorithms for Independent Component Analysis},
     7435  journal = {IEEE Transactions on Neural Networks},
     7436  year = {1999},
     7437  volume = {10},
     7438  number = {3},
     7439  pages = {626-634}
     7440}
     7441@article{Hell1995,
     7442  author = {Hell, S.W. and Soukka, J. and {H\"anninen}, P.E.},
     7443  title = {Two- and multiphoton detection as an imaging mode and means of increasing the resolution in far-field light microscopy: a study based on photon-optics},
     7444  journal = {Bioimaging},
     7445  year = {1995},
     7446  volume = {3},
     7447  number = {2},
     7448  pages = {64-69}
     7449}
     7450@article{Hell1994,
     7451  author = {Hell, S.W. and Lindek, S. and Cremer, C. and Stelzer, E.H.K.},
     7452  title = {Measurement of the 4pi-confocal point spread function proves 75 nm axial resolution},
     7453  journal = {Applied Physics Letter},
     7454  year = {1994},
     7455  volume = {64},
     7456  number = {11},
     7457  pages = {1335-1337}
     7458}
     7459@article{Hell1993,
     7460  author = {Hell, S.W. and Reiner, G. and Cremer, C. and Stelzer, E.H.K.},
     7461  title = {Aberrations in confocal fluorescence microscopy induced by mismatching in refractive index},
     7462  journal = {Journal of Microscopy},
     7463  year = {1993},
     7464  volume = {169},
     7465  number = {3},
     7466  pages = {391--405}
     7467}
     7468@article{Yin1994,
     7469  author = {Yin, H. and Landick, R. and Gelles, J.},
     7470  title = {Tethered particle motion method for studying transcript elongation by a single {RNA} Polymerase Molecule},
     7471  journal = {Biophysical Journal},
     7472  year = {1994},
     7473  volume = {67},
     7474  pages = {2468-2478}
     7475}
     7476@article{Chen1994a,
     7477  author = {Chen, Q. and Defrise, M. and Deconinck, F.},
     7478  title = {Symmetric phase only matched filtering of {Fourier-Mellin} transforms for image registration and recognition},
     7479  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     7480  year = {1994},
     7481  volume = {16},
     7482  number = {12},
     7483  pages = {1156--1168}
     7484}
     7485@inproceedings{Boomgaard2001,
     7486  author = {Boomgaard, R. van den and Weij, R. van der},
     7487  title = {Gaussian Convolutions (Numerical Approximations Based on Interpolation)},
     7488  year = {2001},
     7489  volume = {2106},
     7490  pages = {205--214},
     7491  editor = {Kerckhove, M.},
     7492  publisher = {Springer-Verlag},
     7493  series = {Lecture Notes on Computer Science},
     7494  address = {Vancouver, Canada},
     7495  booktitle = {Proceedings Third International Conference on Scale-Space}
     7496}
     7497@inproceedings{Boomgaard2002,
     7498  author = {Boomgaard, R. van den and Weijer, J. van de},
     7499  title = {On the equivalence of local-mode finding, robust estimation and mean-shift analysis as used in early vision tasks},
     7500  year = {2002},
     7501  month = {August 11-15},
     7502  editor = {Kasturi, R. and Laurendeau, D. and Suen, C.},
     7503  booktitle = {ICPR 2002, International Conference on Pattern Recognition},
     7504  organization = {IEEE Computer Society}
     7505}
     7506@phdthesis{Lindeberg1991,
     7507  author = {Lindeberg, T.},
     7508  title = {Discrete Scale-Space Theory and the Scale-Space Primal Sketch},
     7509  year = {1991},
     7510  school = {Royal Institute of Technology Stockholm, Sweden}
     7511}
     7512@article{Cohen2002,
     7513  author = {Cohen, A.S. and Lapidoth, A.},
     7514  title = {The {Gaussian} Watermarking Game},
     7515  journal = {IEEE Transactions on Information Theory},
     7516  year = {2002},
     7517  volume = {48},
     7518  number = {6},
     7519  pages = {1639--1667},
     7520  month = {June}
     7521}
     7522@article{Lindeberg1993,
     7523  author = {Lindeberg, T.},
     7524  title = {Discrete Derivative Approximations with Scale-space Properties: A Basis for Low-level Feature Extraction},
     7525  journal = {Journal of Mathematical Imaging and Vision},
     7526  year = {1993},
     7527  volume = {3},
     7528  pages = {349--376}
     7529}
     7530@inbook{Davis1971,
     7531  author = {Davis, R.W. and Simon, M. and Davidson, N.},
     7532  title = {Electron microscope heteroduplex methods for mapping regions of base sequence homology in nucleic acids},
     7533  year = {1971},
     7534  volume = {21D},
     7535  pages = {413-428},
     7536  editor = {Grossman, L. and Moldave, K.},
     7537  publisher = {Academic Press},
     7538  series = {Methods in Enzymology},
     7539  address = {London}
     7540}
     7541@article{Cohen2005,
     7542  author = {Cohen, L.},
     7543  title = {The history of noise},
     7544  journal = { IEEE Signal Processing Magazine},
     7545  year = {2005},
     7546  volume = {22},
     7547  number = {6},
     7548  pages = {20-45}
     7549}
     7550@article{Lindeberg1998,
     7551  author = {Lindeberg, T.},
     7552  title = {Feature Detection with Automatic Scale Selection},
     7553  journal = {International Journal of Computer Vision},
     7554  year = {1998},
     7555  volume = {30},
     7556  number = {2},
     7557  pages = {79--116}
     7558}
     7559@article{Owens1994,
     7560  author = {Owens, R.A.},
     7561  title = {Feature-free Images},
     7562  journal = {Pattern Recognition Letters},
     7563  year = {1994},
     7564  volume = {15},
     7565  pages = {35--44},
     7566  month = {January}
     7567}
     7568@article{Lumia1983,
     7569  author = {Lumia, R. and Shapiro, L. and Zuniga, O.},
     7570  title = {A New Connected Components Algorithm for Virtual Memory Computers},
     7571  journal = {Computer Vision, Graphics, and Image Processing},
     7572  year = {1983},
     7573  volume = {22},
     7574  pages = {287--300}
     7575}
     7576@book{Stoyan1985,
     7577  author = {Stoyan, D. and Kendall, W.S. and Mecke, J.},
     7578  title = {Stochastic Geometry and its Applications},
     7579  year = {1985, 1995},
     7580  publisher = {John Wiley \& Sons, inc},
     7581  edition = {second}
     7582}
     7583@article{Patterson1997,
     7584  author = {Patterson, G.H. and Knobel, S.M. and Sharif, W.D. and Kain, S.R. and Piston, D.W.},
     7585  title = {Use of green fluorescent protein and its mutants in quantitative fluorescence microscopy},
     7586  journal = {Biophysical Journal},
     7587  year = {1997},
     7588  volume = {73},
     7589  number = {5},
     7590  pages = {2782-2790}
     7591}
     7592@inproceedings{Felsberg2001a,
     7593  author = {Felsberg, M. and Sommer, G.},
     7594  title = {Scale Adaptive Filtering Derived from the {Laplace} Equation},
     7595  year = {2001},
     7596  address = {{M\"unchen}, Germany},
     7597  booktitle = {DAGM Symposium},
     7598  note = {extended version.}
     7599}
     7600@techreport{Oktem2001,
     7601  author = {ktem, O.},
     7602  title = {A short overview of the {COMET} (COnstrained Maximum Entropy Tomography) methodology for solving inverse problems}
     7603}
     7604@phdthesis{Ellenberger2000,
     7605  author = {Ellenberger, S.L.},
     7606  title = {Influence of defocus on measurements in microscope images },
     7607  year = {2000},
     7608  address = {The Netherlands},
     7609  school = {Technische Universiteit Delft},
     7610  type = {Thesis}
     7611}
     7612@book{Poularikas1996,
     7613  author = {Poularikas (ed), A.D.},
     7614  title = {The Transforms and Applications Handbook},
     7615  year = {1996},
     7616  publisher = {CRC Press}
     7617}
     7618@article{Fleet1990,
     7619  author = {Fleet, D.J. and Jepson, A.D.},
     7620  title = {Computation of component image velocity from local phase information},
     7621  journal = {International Journal of Computer Vision},
     7622  year = {1990},
     7623  volume = {5},
     7624  pages = {77-104}
     7625}
     7626@inproceedings{Soille1998,
     7627  author = {Soille, P. and Talbot, H.},
     7628  title = {Image Structure Orientation using Mathematical Morphology},
     7629  year = {1998},
     7630  volume = {1},
     7631  pages = {1467-1469},
     7632  editor = {Jain, A. K. and Venkatesh, S. and Lovell, B. C.},
     7633  address = {Los Alamitos},
     7634  booktitle = {Proceedings of the 14th IAPR International Conference on Pattern Recognition},
     7635  organization = {IEEE Computer Society Press}
     7636}
     7637@article{Einstein1905a,
     7638  author = {Einstein, A.},
     7639  title = {{Zur Elektro}dynamik bewegter {K\"orper}},
     7640  journal = {Annalen der Physik},
     7641  year = {1905},
     7642  volume = {17},
     7643  pages = {891-921}
     7644}
     7645@article{Einstein1905b,
     7646  author = {Einstein, A.},
     7647  title = {Ist die {Tr\"agheit} eines {K\"orpers} von seinem {Energieinhalt} {abh\"angig?}},
     7648  journal = {Annalen der Physik},
     7649  year = {1905},
     7650  volume = {18},
     7651  pages = {639-641}
     7652}
     7653@book{Soille1999,
     7654  author = {Soille, P.},
     7655  title = {Morphological Image Analysis. Principles and Applications},
     7656  year = {1999},
     7657  publisher = {Springer-Verlag}
     7658}
     7659@inproceedings{Knutsson1981,
     7660  author = {Knutsson , H. and Wilson, R. G. and Granlund, G. H.},
     7661  title = {Anisotropic Filtering Operations for Image Enhancement and their Relation to the Visual System},
     7662  year = {1981},
     7663  month = {August},
     7664  address = {Dallas, Texas},
     7665  booktitle = {Proceedings of {IEEE} Computer Society Conference on Pattern Recognition and Image Processing}
     7666}
     7667@article{Soille1996,
     7668  author = {Soille, P. and Breen, E. J. and Jones, R.},
     7669  title = {Recursive Implementation of Erosions and Dilations Along Discrete Lines at Arbitrary Angles},
     7670  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     7671  year = {1996},
     7672  volume = {18},
     7673  number = {5},
     7674  pages = {562-567}
     7675}
     7676@inproceedings{Spies2003,
     7677  author = {Spies, H. and Forssen, P.E.},
     7678  title = {Two-Dimensional Channel Representation for Multiple Velocities},
     7679  year = {2003},
     7680  pages = {356-362},
     7681  month = {June 29 -July 2},
     7682  editor = {{Big\"un}, J. and Gustavsson, T.},
     7683  publisher = {Springer-Verlag},
     7684  series = {LNCS 2749},
     7685  address = {Berlin},
     7686  booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) }
     7687}
     7688@phdthesis{Spies2001,
     7689  author = {Spies, H.},
     7690  title = {Analysing Dynamic Processes in Range Data Sequences},
     7691  year = {2001},
     7692  month = {July},
     7693  address = {Heidelberg, Germany},
     7694  school = {Ruprechts-Karls-{Universit\"at} University}
     7695}
     7696@article{Shapiro1978a,
     7697  author = {Shapiro, S.D.},
     7698  title = {Properties of Transforms for the Detection of Curves in Noisy Pictures},
     7699  journal = {Computer Graphics and Image Processing},
     7700  year = {1978},
     7701  volume = {8},
     7702  pages = {219--236},
     7703  annote = {key_radon}
     7704}
     7705@article{Schellman1980,
     7706  author = {Schellman, J.A.},
     7707  title = {The flexibility of {DNA : I. Thermal} fluctuations},
     7708  journal = {Biophysical Chemistry},
     7709  year = {1980},
     7710  volume = {11},
     7711  number = {3},
     7712  pages = {321-328}
     7713}
     7714@article{Klein1972,
     7715  author = {Klein, J.-C. and Serra, J.},
     7716  title = {The Texture Analyzer},
     7717  journal = {Journal of Microscopy},
     7718  year = {1972},
     7719  volume = {95},
     7720  number = {2},
     7721  pages = {349--356}
     7722}
     7723@article{Toffoli1997,
     7724  author = {Toffoli, T.},
     7725  title = {Three-Dimensional Rotations by Three Shears},
     7726  journal = {Graphical Models and Image Processing},
     7727  year = {1997},
     7728  volume = {59},
     7729  number = {2},
     7730  pages = {89--95},
     7731  month = {March}
     7732}
     7733@article{Sato2000,
     7734  author = {Sato, Y. and Westin, C.-F. and Bhalerao, A. and Nakajima, S. and Shiraga, N. and Tamura, S. and Kikinus, R.},
     7735  title = {Tissue Classification Based on 3{D} Local Intensity Structures for Volume Rendering},
     7736  journal = {IEEE Transactions on Visualization and Computer Graphics},
     7737  year = {2000},
     7738  volume = {6},
     7739  number = {2},
     7740  pages = {160--179},
     7741  month = {April--June}
     7742}
     7743@article{Kappers1996,
     7744  author = {Kappers, A.M.L. and Pas, S.F. te and Koenderink, J.J. and Doorn, A.J van},
     7745  title = {Detection of divergence in optical flow fields},
     7746  journal = {Journal of the Optical Society of America A},
     7747  year = {1996},
     7748  volume = {13},
     7749  number = {2},
     7750  pages = {227-235}
     7751}
     7752@article{Graham1997,
     7753  author = {Graham, D.J. and Magdalinos, P. and Pimentel, D.},
     7754  title = {Detergent Foam Images as Analogue/Digital Model Fluids. 2. Investigation of Neighborship Partition of the Radial Distribution Function},
     7755  journal = {Journal of Physical Chemistry B},
     7756  year = {1997},
     7757  volume = {101},
     7758  pages = {11212--11220}
     7759}
     7760@article{Siegmund1995,
     7761  author = {Siegmund,D.O. and Worsley, K.J.},
     7762  title = {Testing for a signal with unknown location and scale in a stationary Gaussian random field},
     7763  journal = {Annals of Statistics},
     7764  year = {1995},
     7765  volume = {23},
     7766  pages = {608--639}
     7767}
     7768@article{Zitova2003,
     7769  author = {{Zitov\'a}, B. and Flusser, J.},
     7770  title = {Image registration methods: a survey},
     7771  journal = {Image and Vision Computing},
     7772  year = {2003},
     7773  volume = {21},
     7774  number = {11},
     7775  pages = {977-1000}
     7776}
     7777@article{Balzarini2001,
     7778  author = {Balzarini, M. and Nicula, S. and Mattiello, D. and Aliverti, E.},
     7779  title = {Quantification and Description of Fracture Network by {MRI} Image Analysis},
     7780  journal = {Magnetic Resonance Imaging},
     7781  year = {2001},
     7782  volume = {19},
     7783  pages = {539--541}
     7784}
     7785@article{Watson1994,
     7786  author = {Watson, A.B.},
     7787  title = {Image Compression Using the Discrete Cosine Transform},
     7788  journal = {The Mathematica Journal},
     7789  year = {1994},
     7790  volume = {4},
     7791  number = {1},
     7792  pages = {81--88}
     7793}
     7794@article{Bradley2005,
     7795  author = {Bradley, J. and Dai Rong, Z. and Erni, R. and Browning, N. and Graham, G. and Weber, P. and Smith, J. and Hutcheon, I. and Ishii, H. and Bajt, S. and Floss, C. and Stadermann, F. and Sandford, S.},
     7796  title = {An Astronomical 2175 \AA Feature in Interplanetary Dust Particles},
     7797  journal = {Science},
     7798  year = {2005},
     7799  volume = {307},
     7800  pages = {244-}
     7801}
     7802@article{Coene1996,
     7803  author = {Coene, W.M.J. and Thust, A. and Beeck, M. op de and Dyck, D. van},
     7804  title = {Maximum-likelihood method for focus-variation image reconstruction in high resolution transmission electron microscopy},
     7805  journal = {Ultramicroscopy},
     7806  year = {1996},
     7807  volume = {64},
     7808  pages = {109-135}
     7809}
     7810@article{Bradley2004,
     7811  author = {Bradley, J.P. and Dia, Z.R. and Wall, M. and Erni, R. and Browning, N.},
     7812  title = {An analytical superstem for extraterrestrial materials research},
     7813  journal = {Lunar and Panetary Science},
     7814  year = {2004},
     7815  volume = {35}
     7816}
     7817@article{Morrone1987,
     7818  author = {Morrone, M.C. and Owens, R.A.},
     7819  title = {Feature Detection from Local Energy},
     7820  journal = {Pattern Recognition Letters},
     7821  year = {1987},
     7822  volume = {6},
     7823  pages = {303--313},
     7824  month = {December}
     7825}
     7826@inproceedings{Illers2004,
     7827  author = {Illers, H. and Buhr, E. and Bergmann, D. and Hoeschen, C.},
     7828  title = {Measurement of the Detective Quantum Efficiency (DQE) of digital X-ray imaging devices according to the standard IEC 62220-1},
     7829  year = {2004},
     7830  volume = {5368},
     7831  number = {1},
     7832  pages = {177-187},
     7833  address = {Bellingham, Washington, USA},
     7834  booktitle = {SPIE Proceedings}
     7835}
     7836@article{Princen1994,
     7837  author = {Princen, J. and Illingworth, J. and Kittler, J.},
     7838  title = {Hypothesis Testing: A Framework for Analyzing and Optimizing {Hough} Transform Performance},
     7839  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     7840  year = {1994},
     7841  volume = {16},
     7842  number = {4},
     7843  pages = {329--341},
     7844  month = {April}
     7845}
     7846@phdthesis{Bakker2002,
     7847  author = {Bakker, P.},
     7848  title = {Image structure analysis for seismic interpretation},
     7849  year = {2002},
     7850  address = {The Netherlands},
     7851  school = {Delft University of Technology}
     7852}
     7853@article{Saxton1997,
     7854  author = {Saxton, M.J.},
     7855  title = {Single-particle tracking: the distribution of diffusion coefficients},
     7856  journal = {Biophysical Journal},
     7857  year = {1997},
     7858  volume = {72},
     7859  pages = {1744-1753}
     7860}
     7861@article{Princen1992,
     7862  author = {Princen, J. and Illingworth, J. and Kittler, J.},
     7863  title = {A Formal Definition of the {Hough} Transform: Properties and Relationships},
     7864  journal = {Journal of Mathematical Imaging and Vision},
     7865  year = {1992},
     7866  volume = {1},
     7867  pages = {153--168}
     7868}
     7869@inproceedings{Bakker2001,
     7870  author = {Bakker, P. and Verbeek, P.W. and Vliet, L.J. van},
     7871  title = {Confidence and curvature estimation of curvilinear structures in {3-D}},
     7872  year = {2001},
     7873  volume = {II},
     7874  pages = {139--144},
     7875  month = {July 9-12},
     7876  booktitle = {ICCV'01 (Vancouver, Canada)},
     7877  organization = {IEEE}
     7878}
     7879@book{Constantinescu1974,
     7880  author = {Constantinescu, F.},
     7881  title = {Distributionen und ihre Anwendung in der Physik},
     7882  year = {1974},
     7883  publisher = {Teubner},
     7884  address = {Stuttgart}
     7885}
     7886@book{Chung2001,
     7887  author = {Chung, K.L.},
     7888  title = {A Course in Probability Theory},
     7889  year = {2001 (1968)},
     7890  publisher = {Academic Press},
     7891  edition = {third}
     7892}
     7893@phdthesis{BOOMGAARD1992chap3,
     7894  author = {Boomgaard, R. van den},
     7895  title = {Mathematical Morphology: Extensions Towards Computer Vision},
     7896  year = {1992},
     7897  school = {University of Amsterdam},
     7898  note = {Chapter 3, Dimensional Decomposition of Structuring Functions}
     7899}
     7900@article{Mindell2003,
     7901  author = {Mindell, J.A. and Grigorieff, N.},
     7902  title = {Accurate determination of local defocus and specimen tilt in electron microscopy},
     7903  journal = {Journal of Structural Biology},
     7904  year = {2003},
     7905  volume = {142},
     7906  pages = {334-347}
     7907}
     7908@article{Chung2000,
     7909  author = {Chung, D.H. and Sapiro, G.},
     7910  title = {On the Level Lines and Geometry of Vector-valued Images},
     7911  journal = {IEEE Signal Processing Letters},
     7912  year = {2000},
     7913  volume = {7},
     7914  number = {9},
     7915  pages = {241--243},
     7916  month = {September}
     7917}
     7918@article{Pei1997,
     7919  author = {Pei, S.-C. and Yeh, M.-H.},
     7920  title = {An Introduction to Discrete Finite Frames},
     7921  journal = {Signal Processing Magazine},
     7922  year = {1997},
     7923  pages = {84--96},
     7924  month = {November}
     7925}
     7926@article{Rooms2005,
     7927  author = {Rooms, F. and Philips, W. and Lidke, D.S.},
     7928  title = {Simultaneous degradation estimation and restoration of confocal images and performance evaluation by colocalization analysis},
     7929  journal = {Journal of Microscopy},
     7930  year = {2005},
     7931  volume = {218},
     7932  number = {1},
     7933  pages = {22-36}
     7934}
     7935@article{Pei1994,
     7936  author = {Pei, S.-C. and Liou, L.-G.},
     7937  title = {Using moments to acquire the motion Parameters of a deformable object without correspondence },
     7938  journal = {Image and Vision Computing},
     7939  year = {1994},
     7940  volume = {12},
     7941  number = {8},
     7942  pages = {475--485}
     7943}
     7944@techreport{TEAMReport2000,
     7945  author = {Material Science Division Argonne National Laboratory},
     7946  year = {2000}
     7947}
     7948@inproceedings{Felsberg2002,
     7949  author = {Felsberg, M. and Sommer, G.},
     7950  title = {Image Features Based on a New Approach to {2D} Rotation Invariant Quadrature Filters},
     7951  year = {2002},
     7952  volume = {2350},
     7953  pages = {369--383},
     7954  editor = {Heyden, A. and Sparr, G. and Nielsen, M. and Johansen, P.},
     7955  publisher = {Springer Verlag},
     7956  series = {Lecture Notes in Computer Science},
     7957  booktitle = {ECCV 2002 (Copenhagen, Denmark)}
     7958}
     7959@article{Parida1998,
     7960  author = {Parida, L. and Geiger, D. and Hummel, R.},
     7961  title = {Junctions: Detection, Classification, and Reconstruction},
     7962  journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
     7963  year = {1998},
     7964  volume = {20},
     7965  number = {7},
     7966  pages = {687--698},
     7967  month = {July}
     7968}
     7969@inproceedings{Felsberg2000,
     7970  author = {Felsberg, M. and Sommer, G.},
     7971  title = {Structure Multivector for Local Analysis of Images},
     7972  year = {2000},
     7973  booktitle = {Proc. Dagstuhl Workshop on Theoretical Foundations of Computer Vision}
     7974}
     7975@article{Felsberg2001,
     7976  author = {Felsberg, M. and Sommer, G.},
     7977  title = {The Monogenic Signal},
     7978  journal = {IEEE Transactions on Signal Processing},
     7979  year = {2001},
     7980  volume = {49},
     7981  number = {12},
     7982  pages = {3136--3144}
     7983}
     7984@article{Felsberg2004,
     7985  author = {Felsberg, M. and Sommer, G.},
     7986  title = {The Monogenic Scale-Space: A Unifying Approach to Phase-Based Image Processing in Scale-Space},
     7987  journal = {Journal of Mathematical Imaging and Vision},
     7988  year = {2004},
     7989  volume = {21},
     7990  number = {1},
     7991  pages = {5--26}
     7992}
     7993@article{Stoger-Pollach2006,
     7994  author = {{St\"oger-Pollach}, M. and Franco, H. and Schattschneider, P. and Lazar, S. and Schaffer, B. and Grogger, W. and Zandbergen, H.W.},
     7995  title = {Cerenkov losses: A limit for bandgap determination and {Kramers-Kronig} analysis},
     7996  journal = {Micron},
     7997  year = {2006},
     7998  volume = {37},
     7999  pages = {396-402}
     8000}
     8001@article{Dekker1997,
     8002  author = {Dekker, A.J. den and Bos, A. van den},
     8003  title = {Resolution: a survey},
     8004  journal = {Journal of the Optical Society of America A},
     8005  year = {1997},
     8006  volume = {14},
     8007  number = {3},
     8008  pages = {547-557}
     8009}
     8010@article{Porod1953,
     8011  author = {Porod, G.},
     8012  title = {X-ray and light scattering by chain molecules in solution},
     8013  journal = {Journal of Polymer Science},
     8014  year = {1953},
     8015  volume = {10},
     8016  number = {2},
     8017  pages = {157-166}
     8018}
     8019@article{Wong1992,
     8020  author = {Wong, K. and Kirkland, E. and Xu, P. and Loane, R. and Silcox, J.},
     8021  title = {Measurement of spherical aberration in {STEM}},
     8022  journal = {Ultramicroscopy},
     8023  year = {1992},
     8024  volume = {40},
     8025  pages = {139-150}
     8026}
     8027@techreport{Cozman1997,
     8028  author = {Cozman, F.},
     8029  title = {An Informal Introduction to Quasi-{Bayesian} Theory (and Lower Probability, Lower Expectations, Choquet Capacities, Robust {Bayesian} Methods, etc\dots) for {AI}},
     8030  year = {1997},
     8031  address = {Pittsburgh, USA},
     8032  institution = {The Robotics Institute, Carnegie Mellon University},
     8033  note = {CMU-RI-TR-97-24}
     8034}
     8035@article{Dekker1999,
     8036  author = {Dekker, A.J. den and Sijbers, J. and Dyck, D. van},
     8037  title = {How to optimize the design of a quantitative {HREM} experiment so as to attain the highest precision},
     8038  journal = {Journal of Microscopy},
     8039  year = {1999},
     8040  volume = {194},
     8041  number = {1},
     8042  pages = {95-104}
     8043}
     8044@article{Zhang2003,
     8045  author = {Zhang, P. and Borgnia, M.J. and Mooney, P. and Shi, D. and Pan, M. and O'Herron, P. and Mao, A. and Brogan, D. and Milne, J.L.S. and Subramaniam, S.},
     8046  title = {Automated image acquisition and processing using a new generation of {4Kx4K CCD} cameras for cryo electron microscopic studies of macromolecular assemblies},
     8047  journal = {Journal of Structural Biology},
     8048  year = {2003},
     8049  volume = {143},
     8050  pages = {135-144}
     8051}
     8052@article{Zhang2001,
     8053  author = {Zhang, J. and Gao, J. and Liu, W.},
     8054  title = {Image Sequence Segmentation Using 3-D Structure Tensor and Curve Evolution},
     8055  journal = {IEEE Transactions on Circuits and Systems for Video Technology},
     8056  year = {2001},
     8057  volume = {11},
     8058  number = {5},
     8059  pages = {629--641},
     8060  month = {May}
     8061}
     8062@article{Kutka1996,
     8063  author = {Kutka, R. and Stier, S.},
     8064  title = {Extraction of Line Properties Based on Direction Fields},
     8065  journal = {IEEE Transactions on Medical Imaging},
     8066  year = {1996},
     8067  volume = {15},
     8068  number = {1},
     8069  pages = {51--58},
     8070  month = {February}
     8071}
     8072@article{Adams1993,
     8073  author = {Adams, R.},
     8074  title = {Radial Decomposition of Discs and Spheres},
     8075  journal = {CVGIP: Graphical Models and Image Processing},
     8076  year = {1993},
     8077  volume = {55},
     8078  number = {5},
     8079  pages = {325--332}
     8080}
     8081@inproceedings{Gilles1985,
     8082  author = {Gilles, W.},
     8083  title = {Universal Computer Program for Seeking of a Collision Free Path for an Industrial Robot},
     8084  year = {1985},
     8085  booktitle = {Proceedings of the 15th ISIR Conference (Tokyo)}
     8086}
     8087@article{Rushing2001,
     8088  author = {Rushing, J.A. and Ranganath, H.S. and Hinke, T.H. and Graves, S.J.},
     8089  title = {Using association rules as texture features},
     8090  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     8091  year = {2001},
     8092  volume = {23},
     8093  number = {8},
     8094  pages = {845 -858}
     8095}
     8096@article{Jonge2004,
     8097  author = {Jong, N. de and Bonard, J.M.},
     8098  title = {Carbon nanotube electron sources and applications},
     8099  journal = {Philosophical Transactions of the Royal Society of London A},
     8100  year = {2004},
     8101  volume = {362},
     8102  pages = {2239-2266}
     8103}
     8104@article{Mullikin1992,
     8105  author = {Mullikin, J.C.},
     8106  title = {The vector distance transform in two and three dimensions},
     8107  journal = {Graphical Models and Image Processing},
     8108  year = {1992},
     8109  volume = {54},
     8110  number = {6},
     8111  pages = {526-535}
     8112}
     8113@article{Hermans1952,
     8114  author = {Hermans, J.J. and Ullman, R.},
     8115  title = {The statistics of stiff chains, with applications to light scattering},
     8116  journal = {Physica},
     8117  year = {1952},
     8118  volume = {18},
     8119  number = {11},
     8120  pages = {951-971}
     8121}
     8122@article{Kram1993,
     8123  author = {Kram, A.M. and Oostergetel, G.T. and Bruggen, E.F.J. van},
     8124  title = {Localization of branching enzyme in potato tuber cells with the use of immunoelectron microscopy},
     8125  journal = {Plant Physiology},
     8126  year = {1993},
     8127  volume = {101},
     8128  pages = {237-243}
     8129}
     8130@article{Daubechies1986,
     8131  author = {Daubechies, I. and Grossmann, A. and Meyer, Y.},
     8132  title = {Painless nonorthogonal expansions},
     8133  journal = {J. Math. Phys.},
     8134  year = {1986},
     8135  volume = {27},
     8136  pages = {1271--1283}
     8137}
     8138@book{Misner1999,
     8139  author = {Misner, C.W. and Thorne, K.S. and Wheeler, J.A.},
     8140  title = {Gravitation},
     8141  year = {1999},
     8142  publisher = {W.H. Freeman and Company},
     8143  address = {New York}
     8144}
     8145@book{Abramowitz1973,
     8146  author = {Abramowitz, M. and Stegun, I.A.},
     8147  title = {Handbook of Mathematical Functions},
     8148  year = {1973},
     8149  publisher = {Dover Publications}
     8150}
     8151@article{CLIF1,
     8152  author = {Gull, S. and Lasenby, A. and Doran, C.},
     8153  title = {Imaginary Numbers are not Real - the Geometric Algebra of Spacetime.},
     8154  journal = {Found. Phys.},
     8155  year = {1993},
     8156  volume = {23},
     8157  pages = {1775}
     8158}
     8159@book{Young1983,
     8160  author = {Oppenheim, A.V. and Willsky, A.S. and Young, I.T.},
     8161  title = {Signals and Systems},
     8162  year = {1983},
     8163  publisher = {Prentice-Hall}
     8164}
     8165@article{Elder1999,
     8166  author = {Elder, J.H.},
     8167  title = {Are Edges Incomplete?},
     8168  journal = {International Journal of Computer Vision},
     8169  year = {1999},
     8170  volume = {34},
     8171  number = {2/3},
     8172  pages = {97--122}
     8173}
     8174@article{Sole2001,
     8175  author = {{Sol\'e}, A.F. and {L\'opez}, A. and Sapiro, G.},
     8176  title = {Crease Enhancement Diffusion},
     8177  journal = {Computer Vision and Image Understanding},
     8178  year = {2001},
     8179  volume = {84},
     8180  pages = {241--248}
     8181}
     8182@article{Elder1998,
     8183  author = {Elder, J.H. and Zucker, S.W.},
     8184  title = {Local scale control for edge detection and blur estimation},
     8185  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     8186  year = {1998},
     8187  volume = {20},
     8188  number = {7},
     8189  pages = {699--716}
     8190}
     8191@book{Vladimirov1986,
     8192  author = {Vladimirov, S.V.},
     8193  title = {A Collection of Problems on the Equations of Mathematical Physics},
     8194  year = {1986},
     8195  publisher = {Springer},
     8196  address = {Heildelberg}
     8197}
     8198@inproceedings{Elder1996,
     8199  author = {Elder, J. and Zucker, S.},
     8200  title = {Scale Space Localization, Blur and Contour-based Image Coding},
     8201  year = {1996},
     8202  pages = {27--34},
     8203  address = {San Francisco, USA},
     8204  booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition}
     8205}
     8206@article{Young1977,
     8207  author = {Young, I.T.},
     8208  title = {Proof without Prejudice: Use of the {Kolmogorov-Smirnov} Test for the Analysis of Histograms from Flow Systems and Other Sources},
     8209  journal = {Journal of Histochemistry and Cytochemistry},
     8210  year = {1977},
     8211  volume = {25},
     8212  number = {7},
     8213  pages = {935--941}
     8214}
     8215@article{Young1974,
     8216  author = {Young, I.T. and Walker, J.E. and Bowie, J.E.},
     8217  title = {An Analysis Technique for Biological Shape {I}},
     8218  journal = {Information and Control},
     8219  year = {1974},
     8220  volume = {25},
     8221  number = {4},
     8222  pages = {357--370},
     8223  month = {August}
     8224}
     8225@article{Ebeling1993,
     8226  author = {Ebeling, H. and Wiedemann, G.},
     8227  title = {Detecting Structure in Two Dimensions Combining Voronoi Tessellation and Percolation},
     8228  journal = {Physical Review E},
     8229  year = {1993},
     8230  volume = {47},
     8231  number = {1},
     8232  pages = {704--710},
     8233  month = {January}
     8234}
     8235@article{Goutsias2000,
     8236  author = {Goutsias, John and Heijmans, Henk J.A.M.},
     8237  title = {Fundamenta Morphologicae Mathematicae},
     8238  journal = {Fundamenta Informaticae},
     8239  year = {2000},
     8240  volume = {41},
     8241  pages = {1--31}
     8242}
     8243@article{Winkler2003,
     8244  author = {Winkler, H. and Taylor, K.A.},
     8245  title = {Focus gradient correction applied to tilt series image data used in electron tomography},
     8246  journal = {Journal of Structural Biology},
     8247  year = {2003},
     8248  volume = {143},
     8249  pages = {24-32}
     8250}
     8251@article{Winkler2006,
     8252  author = {Winkler, H. and Taylor, K.A.},
     8253  title = {Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography},
     8254  journal = {Ultramicroscopy},
     8255  year = {2006},
     8256  volume = {106},
     8257  pages = {240-254}
     8258}
     8259@article{Shapiro1975,
     8260  author = {Shapiro, S.D.},
     8261  title = {Transformations for the Computer Detection of Curves in Noisy Pictures},
     8262  journal = {Computer Graphics and Image Processing},
     8263  year = {1975},
     8264  volume = {4},
     8265  pages = {328--338},
     8266  annote = {key_radon}
     8267}
     8268@article{Weickert2001,
     8269  author = {Weickert, J. and {Sch\"orr}, C.},
     8270  title = {Variational Optic Flow Computation with a Spatio-Temporal Smoothness Constraint},
     8271  journal = {Journal of Mathematical Imaging and Vision},
     8272  year = {2001},
     8273  volume = {14},
     8274  number = {3},
     8275  pages = {245 - 255}
     8276}
     8277@article{Heintzmann2003a,
     8278  author = {Heintzmann, R.},
     8279  title = {Saturated patterned excitation microscopy with two-dimensional excitation patterns},
     8280  journal = {Micron},
     8281  year = {2003},
     8282  volume = {34},
     8283  number = {7},
     8284  pages = {283-291}
     8285}
     8286@article{Shapiro1978,
     8287  author = {Shapiro, S.D.},
     8288  title = {Feature Space Transforms for Curve Detection},
     8289  journal = {Pattern Recognition},
     8290  year = {1978},
     8291  volume = {10},
     8292  pages = {129--143},
     8293  annote = {key_radon}
     8294}
     8295@article{Verbeek1994kort,
     8296  author = {Verbeek, P.W. and Vliet, L.J. van },
     8297  title = {On the location error of curved edges in low-pass filtered {2-D} and {3-D} images },
     8298  journal = {PAMI},
     8299  year = {1994},
     8300  volume = {16},
     8301  number = {7},
     8302  pages = {726--733}
     8303}
     8304@inproceedings{Thevenaz2000,
     8305  author = {Th\'evenaz, P. and Blu, T. and Unser M.},
     8306  title = {Image Interpolation and Resampling},
     8307  year = {2000},
     8308  editor = {Bankman, I.},
     8309  publisher = {Academic Press},
     8310  booktitle = {Handbook of Medical Image Processing}
     8311}
     8312@article{Guessoum1986,
     8313  author = {Guessoum, A. and Merserau, R.M.},
     8314  title = {Fast Algorithms for the Multidimensional Discrete {Fourier} Transform},
     8315  journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
     8316  year = {1986},
     8317  volume = {34},
     8318  number = {4},
     8319  pages = {937--943},
     8320  month = {August},
     8321  annote = {key_fft}
     8322}
     8323@phdthesis{Vrooman1991,
     8324  author = {Vrooman, H.A.},
     8325  title = {Quantitative analysis of interferograms},
     8326  year = {1991},
     8327  address = {Delft, the Netherlands},
     8328  school = {Delft University of Technology}
     8329}
     8330@article{Levi2005,
     8331  author = {Levi, V. and Ruan, Q.Q. and Grattown, E.},
     8332  title = {{3-D} Particle Tracking in a Two-Photon Microscope: Application to the Study of Molecular Dynamics in Cells},
     8333  journal = {Biophysical Journal},
     8334  year = {2005},
     8335  volume = {88},
     8336  number = {4},
     8337  pages = {2919-2929}
     8338}
     8339@book{Bernerian1992,
     8340  author = {Berberian, S.K.},
     8341  title = {Linear Algebra},
     8342  year = {1992},
     8343  publisher = {Oxford},
     8344  address = {Oxford}
     8345}
     8346@misc{Zach2003,
     8347  author = {Zach, J.},
     8348  title = {Method for detecting geometrical-optical aberrations},
     8349  year = {2003},
     8350  howpublished = {US2003/0001102}
     8351}
     8352@book{Heijmans1994,
     8353  author = {Heijmans, H.J.A.M.},
     8354  title = {Morphological Image Operators},
     8355  year = {1994},
     8356  volume = {25},
     8357  editor = {Hawkes, P.W. and Kazan, B.},
     8358  publisher = {Academic Press},
     8359  series = {Advances in Electronics and Electron Physics},
     8360  address = {San Diego}
     8361}
     8362@article{Zemlin1978,
     8363  author = {Zemlin, F. and Weiss, K. and Schiske, P. and Kunath, W. and Herrmann, K.-H.},
     8364  title = {Coma-free alignment of high resolution electron microscopes with the aid of optical diffratctorgrams},
     8365  journal = {Ultramicroscopy},
     8366  year = {1978},
     8367  volume = {3},
     8368  pages = {49-60}
     8369}
     8370@article{Goetcherian1980,
     8371  author = {Goetcherian, V.},
     8372  title = {From Binary to Grey Tone Image Processing Using Fuzzy Logic Concepts},
     8373  journal = {Pattern Recognition},
     8374  year = {1980},
     8375  volume = {12},
     8376  pages = {7-15}
     8377}
     8378@inbook{Rao2002,
     8379  author = {Rao, R.},
     8380  title = {Encyclopedia of Imaging Science and Technology},
     8381  year = {2002},
     8382  volume = {2},
     8383  pages = {1444--1450},
     8384  editor = {Hornak, J.P.},
     8385  publisher = {John Wiley\&Sons},
     8386  chapter = {Wavelet Transforms}
     8387}
     8388@book{Jahne2002,
     8389  author = {{J\"ahne}, B.},
     8390  title = {Digital Image Processing},
     8391  year = {2002},
     8392  publisher = {Springer-Verlag},
     8393  address = {Berlin}
     8394}
     8395@misc{Kahan1995,
     8396  author = {Kahan, W.},
     8397  title = {The Baleful Effect of Computer Benchmarks upon Applied Mathematics, Physics and Chemistry},
     8398  year = {1995},
     8399  howpublished = {Mathematics Dept., and Elect. Eng. \& Computer Sci. Dept., University of California, USA}
     8400}
     8401@article{You1996,
     8402  author = {You, Y.-L. and Kaveh, M.},
     8403  title = {Ringing Reduction in Image Restoration by Orientation-Selective Regularization},
     8404  journal = {IEEE Signal Processing Letters},
     8405  year = {1996},
     8406  volume = {3},
     8407  number = {2},
     8408  pages = {29--31},
     8409  month = {February}
     8410}
     8411@article{Luengo2005a,
     8412  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
     8413  title = {Using Line Segments as Structuring Elements for Sampling-Invariant Measurements},
     8414  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     8415  year = {2005},
     8416  volume = {27},
     8417  number = {11},
     8418  pages = {1826-1831}
     8419}
     8420@mastersthesis{Luengo1998,
     8421  author = {Luengo Hendriks, C.L.},
     8422  title = {Improved Resolution in Infrared Imaging Using randomly Shifted Images},
     8423  year = {1998},
     8424  address = {Delft},
     8425  school = {Pattern Recognition Group, Faculty of Applied Sciences, Delft University of Technology}
     8426}
     8427@article{Gatica2001,
     8428  author = {Gatica-Perez, D. and Gu, C. and Sun, M.-T. and Ruiz-Correa, S.},
     8429  title = {Extensive partition operators, gray-level connected operators, and region merging/classification segmentation algorithms: theoretical links },
     8430  journal = {IEEE Transactions on Image Processing},
     8431  year = {2001},
     8432  volume = {10},
     8433  number = {9},
     8434  pages = {1332 -1345}
     8435}
     8436@article{Keil1996,
     8437  author = {Keil, F.J.},
     8438  title = {Modelling of Phenomena within Catalyst Particles},
     8439  journal = {Chemical Engineering Science},
     8440  year = {1996},
     8441  volume = {51},
     8442  number = {10},
     8443  pages = {1543--1567},
     8444  month = {May}
     8445}
     8446@misc{Tolimieri2000,
     8447  author = {Tolimieri, R. and An, M.},
     8448  title = {Lesser Known {FFT} Algorithms},
     8449  year = {2000},
     8450  note = {20th Century Harmonic Analysis -- A Celebration, NATO Advanced Study Institute},
     8451  annote = {key_fft}
     8452}
     8453@inproceedings{Felsberg2000a,
     8454  author = {Felsberg, M. and Sommer, G.},
     8455  title = {The Multidimensional Isotropic Generalization of Quadrature Filters in Geometric Algebra},
     8456  year = {2000},
     8457  pages = {175--185},
     8458  publisher = {Springer Verlag},
     8459  booktitle = {2nd International Workshop on Algebraic Frames for the Perception-Action Cycle, AFPAC 2000, Kiel, Germany}
     8460}
     8461@incollection{Young1998,
     8462  author = {Young, I.T. and Gerbrands, J.J. and Vliet, L.J. van },
     8463  title = {Image Processing Fundamentals },
     8464  year = {1998},
     8465  editor = {Madisetti, V.K. and Williams, D.B.},
     8466  publisher = {IEEE Press and CRC Press },
     8467  chapter = {51},
     8468  booktitle = {The Digital Signal Processing handbook}
     8469}
     8470@article{Jeulin2000,
     8471  author = {Jeulin, D.},
     8472  title = {Random Texture Models for Material Structures},
     8473  journal = {Statistics and Computing},
     8474  year = {2000},
     8475  volume = {10},
     8476  pages = {121--132}
     8477}
     8478@inproceedings{Young1993,
     8479  author = {Young, I.T. and Zagers, R. and Vliet, L.J. van and Mullikin, J. and Boddeke, F.R. and Netten, H.},
     8480  title = {Depth-of-focus in microscopy },
     8481  year = {1993},
     8482  pages = {493-498},
     8483  month = {May 25-28},
     8484  editor = {{H\o gda}, K. A. and Braathen, B. and Heia, K.},
     8485  publisher = {Norwegian Society for Image Processing and Pattern Recognition},
     8486  address = {{Troms\o} Norway},
     8487  booktitle = {SCIA'93, Proceedings of the 8th Scandinavian Conference on Image Analysis}
     8488}
     8489@article{HaarRomeny1994,
     8490  author = {Haar Romeny, B.M. ter and Florack, L.M.J. and Salden, A.H. and Viergever, M.A.},
     8491  title = {Higher order differential structure of images},
     8492  journal = {Image and Vision Computing},
     8493  year = {1994},
     8494  volume = {12},
     8495  number = {6},
     8496  pages = {317-325}
     8497}
     8498@article{Haider1998,
     8499  author = {Haider, M. and Rose, H. and Uhlemann, S. and Schwan, E. and Kabius, B. and Urban, K.},
     8500  title = {A spherical-aberration-corrected 200 {kV} transmission electron microscope},
     8501  journal = {Ultramicroscopy},
     8502  year = {1998},
     8503  volume = {75},
     8504  pages = {53-60}
     8505}
     8506@article{Young1995,
     8507  author = {Young, I.T. and Vliet, L.J. van},
     8508  title = {Recursive implementation of the {G}aussian filter},
     8509  journal = {Signal Processing},
     8510  year = {1995},
     8511  volume = {44},
     8512  number = {2},
     8513  pages = {139--151}
     8514}
     8515@article{Young1996,
     8516  author = {Young, I.T.},
     8517  title = {Quantitative Microscopy},
     8518  journal = {IEEE Engineering in Medicine and Biology},
     8519  year = {1996},
     8520  volume = {15},
     8521  number = {1},
     8522  pages = {59-66}
     8523}
     8524@article{Milne2002,
     8525  author = {Milne, J.L.S. and Shi, D. and Rosenthal, P.B. and Sunshine, J.S. and Domingo, G.J. and Wu, X. and Brooks, B.R. and Perham, R.N. and Henderson, R. and Subramaniam, S.},
     8526  title = {Molecular architecture and mechanism of an icosahedral pyruvate dehydrogenase complex: a multifunctional catalytic machine},
     8527  journal = {EMBO Journal},
     8528  year = {2002},
     8529  volume = {21},
     8530  pages = {5587-5598}
     8531}
     8532@incollection{Ginkel2001a,
     8533  author = {Ginkel, M. van and Vliet, L.J. van and Verbeek, P.W.},
     8534  title = {Applications of Image Analysis in Orientation Space},
     8535  year = {2001},
     8536  pages = {365--380},
     8537  editor = {Vossepoel, A.M. and Vos, F.M.},
     8538  booktitle = {Fourth Quinqennial Review 1996-2001 of the Dutch Society for Pattern Recognition and Image Processing}
     8539}
     8540@book{Schone1990,
     8541  author = {W. {Sch\"one}},
     8542  title = {Differentialgeometrie},
     8543  year = {1990},
     8544  publisher = {Teubner},
     8545  address = {Leipzig}
     8546}
     8547@article{Nickell2004,
     8548  author = {Nickell, S. and {F\"orster}, F. and Linaroudis, A. and Net, W. del and Beck, F. and Hegerl, R. and Baumeister, W. and Plizko, J.M.},
     8549  title = {{TOM} software toolbox: acquisition and analysis for electron tomography},
     8550  journal = {Journal of Strcutural Biology},
     8551  year = {2004},
     8552  volume = {149},
     8553  number = {3},
     8554  pages = {227-234}
     8555}
     8556@inproceedings{Kaltenbacher1996,
     8557  author = {Kaltenbacher, E.A. and Hardie, R.C.},
     8558  title = {High resolution infrared image reconstruction using multiple, low resolution, aliased frames},
     8559  year = {1996},
     8560  volume = {2751},
     8561  pages = {142-152},
     8562  booktitle = {SPIE Proceedings}
     8563}
     8564@article{Yaroslavsky2003,
     8565  author = {Yaroslavsky, L.},
     8566  title = {Boundary effect free and adaptive discrete signal sinc-interpolation algorithms for signal and image resampling},
     8567  journal = {Applied Optics},
     8568  year = {2003},
     8569  volume = {42},
     8570  number = {20},
     8571  pages = {4166-4175}
     8572}
     8573@article{Yeong1998,
     8574  author = {Yeong, C.L.Y. and Torquato, S.},
     8575  title = {Reconstructing random media},
     8576  journal = {Physical review E},
     8577  year = {1998},
     8578  volume = {57},
     8579  number = {1},
     8580  month = {January}
     8581}
     8582@inproceedings{Leonardis1992,
     8583  author = {Leonardis, A. and Bajcsy, R.},
     8584  title = {Finding Parametric Curves in an Image},
     8585  year = {1992},
     8586  pages = {653--657},
     8587  month = {May},
     8588  editor = {Sandini, G.},
     8589  publisher = {Springer},
     8590  series = {Lecture Notes in Computer Science 588},
     8591  address = {Santa Margherita Ligure, Italy},
     8592  booktitle = {Second European Conference on Computer Vision}
     8593}
     8594@article{Wallrabe2005,
     8595  author = {Wallrabe, H. and Periasamy, A.},
     8596  title = {Imaging protein molecules using FRET and FLIM microscopy},
     8597  journal = {Current Opinion in Biotechnology},
     8598  year = {2005},
     8599  volume = {16},
     8600  number = {1},
     8601  pages = {19-27}
     8602}
     8603@article{Barron1994,
     8604  author = {Barron, J.L. and Fleet, D.J. and Beauchemin, S.},
     8605  title = {Performance of optical flow techniques},
     8606  journal = {International Journal of Computer Vision},
     8607  year = {1994},
     8608  volume = {12},
     8609  number = {1},
     8610  pages = {43--77}
     8611}
     8612@book{Bronstein2000,
     8613  author = {Bronstein, I.N. and Semendjajew, K.A. and Musiol, G. and {M\"uhlig}, H.},
     8614  title = {Taschenbuch der Mathematik},
     8615  year = {2000},
     8616  publisher = {Verlag Harri Deutsch}
     8617}
     8618@article{Martin2001,
     8619  author = {Martin, C. san and Burnett, R.M. and Hass, F. de and Heinkel, R. and Rutten, T. and Fuller, S.D. and Butcher, S.J. and Bamford, D.H.},
     8620  title = {Combined {EM/X}-Ray Imaging Yields a Quasi-Atomic Model of the Adenovirus-Related Bacteriophage {PRD1} and Shows Key Capsid and Membrane Interactions},
     8621  journal = {Structure},
     8622  year = {2001},
     8623  volume = {9},
     8624  pages = {917-930}
     8625}
     8626@article{Cowley1969,
     8627  author = {Cowley, J.M.},
     8628  title = {Image contrast in a transmission scanning electron microscope},
     8629  journal = {Applied Physics Letters},
     8630  year = {1969},
     8631  volume = {15},
     8632  number = {2},
     8633  pages = {58-59}
     8634}
     8635@article{Rivetti2001,
     8636  author = {Rivetti, C. and Codeluppi, S.},
     8637  title = {Accurate length determination of {DNA} molecules visualized by atomic force microscopy: evidence for a partial {B-} to {A-form} transition on mica},
     8638  journal = {Ultramicroscopy},
     8639  year = {2001},
     8640  volume = {87},
     8641  number = {1-2},
     8642  pages = {55-66}
     8643}
     8644@article{Aert2004,
     8645  author = {Aert, S. van and Dekker, A.J. den and Dyck, D. van},
     8646  title = {How to optimize the experimental design of quantitative atomic resolution {TEM} experiments?},
     8647  journal = {Micron},
     8648  year = {2004},
     8649  volume = {35},
     8650  pages = {425-429}
     8651}
     8652@book{Fraleigh1994,
     8653  author = {Fraleigh, J.B.},
     8654  title = {A First Course in Abstract Algebra},
     8655  year = {1994},
     8656  publisher = {Addison-Wesley},
     8657  edition = {5th}
     8658}
     8659@article{Duffin1952,
     8660  author = {Duffin, R.J. and Schaeffer, A.C.},
     8661  title = {A Class of Nonharmonic {Fourier} Series},
     8662  journal = {Transactions of the American Mathematical Society},
     8663  year = {1952},
     8664  volume = {72},
     8665  pages = {341--366},
     8666  month = {March}
     8667}
     8668@article{Aert2002,
     8669  author = {Aert, S. van and Dekker, A.J. den and Dyck, D. van and Bos, A. van den},
     8670  title = {High-resolution electron microscopy and electron tomography: resolution versus precision},
     8671  journal = {Journal of Structural Biology},
     8672  year = {2002},
     8673  volume = {138},
     8674  pages = {21-33}
     8675}
     8676@article{Cootes2001,
     8677  author = {Cootes, T.F. and Edwards, G.J. and Taylor, C.J.},
     8678  title = {Active Appearance Models},
     8679  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     8680  year = {2001},
     8681  volume = {23},
     8682  number = {6},
     8683  pages = {681--685},
     8684  month = {June}
     8685}
     8686@article{Hilfer1991,
     8687  author = {Hilfer, R.},
     8688  title = {Geometric and Dielectric Characterization of Porous Media},
     8689  journal = {Physical Review B},
     8690  year = {1991},
     8691  volume = {44},
     8692  number = {1},
     8693  pages = {60--75},
     8694  month = {July}
     8695}
     8696@article{Hilfer1992,
     8697  author = {Hilfer, R.},
     8698  title = {Local-Porosity Theory for Flow in Porous Media},
     8699  journal = {Physical Review B},
     8700  year = {1992},
     8701  volume = {45},
     8702  number = {13},
     8703  pages = {7115--7121},
     8704  month = {April}
     8705}
     8706@article{Rieger2004c,
     8707  author = {Rieger, B. and Molenaar, C. and Dirks, R.W. and Vliet, L.J.},
     8708  title = {Alignment of the Cell Nucleus From Labeled Proteins Only for {4D} In Vivo Imaging},
     8709  journal = {Microscopy Research and Technique},
     8710  year = {2004},
     8711  volume = {64},
     8712  pages = {142-150}
     8713}
     8714@unpublished{VerbeekXXXX,
     8715  author = {Verbeek, P.W.},
     8716  title = {Line and Edge Detection by Symmetry Filters}
     8717}
     8718@article{Heertje1998,
     8719  author = {Heertje, I. and Roijers, E.C. and Hendrikx, H.A.C.M.},
     8720  title = {Liquid Crystalline Phases in the Structuring of Food Products},
     8721  journal = {Lebensmittel-Wissenschaft und Technologie},
     8722  year = {1998},
     8723  number = {31},
     8724  pages = {387--396}
     8725}
     8726@article{Ritchie1974,
     8727  author = {Ritchie, D.M. and Thompson, K.},
     8728  title = {The {UNIX} Time-Sharing System},
     8729  journal = {Communications of the {ACM}},
     8730  year = {1974},
     8731  volume = {17},
     8732  number = {7},
     8733  pages = {365--375},
     8734  month = {July}
     8735}
     8736@inproceedings{Blanc1995,
     8737  author = {Blanc, C. and Schlick, C.},
     8738  title = {{X}-Splines: A Spline Model Designed for the End-User},
     8739  year = {1995},
     8740  pages = {377--386},
     8741  booktitle = {Proceedings of SIGGRAPH}
     8742}
     8743@article{Zwiggelaar1999,
     8744  author = {Zwiggelaar, R. and Parr, T. and Schumm, J.E. and Hutt, I.W. and Taylor, C.J. and Astley, S.M. and Boggis, R.M.},
     8745  title = {Model-based Detection of Spiculated Lesions in Mammograms},
     8746  journal = {Medical Image Analysis},
     8747  year = {1999},
     8748  volume = {3},
     8749  number = {1},
     8750  pages = {39-62}
     8751}
     8752@article{Pothuaud2000,
     8753  author = {Pothuaud, L. and Porion, P. and Lespessailles, E. and Benhamou, C.L. and Levitz, P.},
     8754  title = {A New Method for Three-Dimensional Skeleton Graph Analysis of Porous Media: Application to Trabecular Bone Microarchitecture},
     8755  journal = {Journal of Microscopy},
     8756  year = {2000},
     8757  volume = {199, Pt 2},
     8758  pages = {149--161},
     8759  month = {August}
     8760}
     8761@inproceedings{Zwiggelaar1998,
     8762  author = {Zwiggelaar, R. and Taylor, C.J.},
     8763  title = {Abnormal Masses in Mammograms: Detection Using Scale-Orientation Signatures},
     8764  year = {1998},
     8765  volume = {1496},
     8766  publisher = {Springer Verlag},
     8767  series = {Lecture Notes in Computer Science},
     8768  address = {Berlin},
     8769  booktitle = {Medical Image Computing and Computer-Assisted Intervention - MICCAI'98, Proc. 1st Int. Conf. (Cambridge, MA, USA, Oct.11-13)}
     8770}
     8771@article{Besag1974,
     8772  author = {Besag, J.E.},
     8773  title = {Spatial Interaction and the Statistical Analysis of Lattice Systems},
     8774  journal = {Journal of the Royal Statistical Society, Series B},
     8775  year = {1974},
     8776  volume = {36},
     8777  pages = {192--236}
     8778}
     8779@inproceedings{SHORTGlas2001,
     8780  author = {Glas, M. van der and Vos, F.M. and Vossepoel, A.M.},
     8781  title = {Assessment of Center of Rotation of the Glenohumeral Joint by a Modified {H}ough Transform},
     8782  year = {2001},
     8783  volume = {2208},
     8784  series = {Lecture Notes on Computer Science}
     8785}
     8786@article{Liang2002,
     8787  author = {Liang, Y. and Ke, E.Y. and Zhou, Z.H.},
     8788  title = {{IMIRS}: a high-resolution 3D reconstruction pachage integrated with a relational image database},
     8789  journal = {Journal of Structural Biology},
     8790  year = {2002},
     8791  volume = {137},
     8792  pages = {292-304}
     8793}
     8794@article{Wang2005,
     8795  author = {Wang, H.-W. and Nogales, E.},
     8796  title = {An iterative Fourier-Bessel algorithm for reconstruction of helical structures with severe Bessel overlap},
     8797  journal = {Journal of Structural Biology},
     8798  year = {2005},
     8799  volume = {149},
     8800  pages = {65-78}
     8801}
     8802@article{Milanfar1999,
     8803  author = {P. Milanfar},
     8804  title = {A Model of the Effect on Image Motion in the Radon Transform Domain},
     8805  journal = {IEEE Transaction on Image Processing},
     8806  year = {1999},
     8807  volume = {8},
     8808  number = {9},
     8809  pages = {1276--1281},
     8810  annote = {key_radon}
     8811}
     8812@article{Lee1997,
     8813  author = {Lee, Kyung-Hoon and Morales, Aldo and Ko, Sung-Jea},
     8814  title = {Adaptive Basis Matrix for the Morphological Function Processing Opening and Closing},
     8815  journal = {IEEE Transactions on Image Processing},
     8816  year = {1997},
     8817  volume = {6},
     8818  number = {5},
     8819  pages = {769--774},
     8820  month = {May}
     8821}
     8822@article{DeRosier2000,
     8823  author = {DeRosier, D.J.},
     8824  title = {Correction of high-resolution data for curvature of the {Ewald} sphere},
     8825  journal = {Ultramicrosocpy},
     8826  year = {2000},
     8827  volume = {81},
     8828  number = {2},
     8829  pages = {83-98}
     8830}
     8831@article{Jansen1993,
     8832  author = {Jansen, R.C. and Reinink, K. and Heijden, G.W.A.M. van der},
     8833  title = {Analysis of Grey Level Histograms by using Statistical Methods for Mixtures of Distributions},
     8834  journal = {Pattern Recognition Letters},
     8835  year = {1993},
     8836  volume = {14},
     8837  pages = {585--590}
     8838}
     8839@article{Lee1999,
     8840  author = {Lee, M.S. and Medioni, G.},
     8841  title = {Grouping ., -, {$\rightarrow$}, ?, into Regions, Curves, and Junctions},
     8842  journal = {Computer Vision and Image Understanding},
     8843  year = {1999},
     8844  volume = {76},
     8845  number = {1},
     8846  pages = {54--69},
     8847  month = {October}
     8848}
     8849@article{Schellman1995,
     8850  author = {Schellman, J.A. and Harvey, S.C.},
     8851  title = {Static contributions to the persistence length of {DNA} and dynamic contributions to {DNA} curvature},
     8852  journal = {Biophysical Chemistry},
     8853  year = {1995},
     8854  volume = {55},
     8855  number = {1},
     8856  pages = {95-114}
     8857}
     8858@article{Bigun1994a,
     8859  author = {{Big\"un}, J. and Hans du Buf, J.M.},
     8860  title = {{N}-folded Symmetries by Complex Moments in {Gabor} Space and their Application to Unsupervised Texture Segmentation},
     8861  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     8862  year = {1994},
     8863  volume = {16},
     8864  number = {1},
     8865  pages = {80--87},
     8866  month = {January}
     8867}
     8868@inproceedings{Danielsson1980a,
     8869  author = {Danielsson, P.-E.},
     8870  title = {Rotation-Invariant Linear Operators with Directional Response},
     8871  year = {1980},
     8872  volume = {2},
     8873  pages = {1171--1176},
     8874  month = {December},
     8875  booktitle = {Proceedings of the 5th international conference on Pattern Recognition (Miami Beach, Florida)}
     8876}
     8877@article{Heintzmann2003,
     8878  author = {Heintzmann, R. and Sarafis, V. and Munroe, P. and Nailon, J. and Hanley, Q.S. and Jovin, T.M.},
     8879  title = {On resolution enhancement by subtraction of confocal signals taken at different pinhole sizes},
     8880  journal = {Micron},
     8881  year = {2003},
     8882  volume = {34},
     8883  number = {7},
     8884  pages = {293-300}
     8885}
     8886@article{Arnison2002,
     8887  author = {Arnison, M.R. and Sheppard, C.J.R.},
     8888  title = {A 3D vectorial optical transfer function suitable for arbitrary pupil functions},
     8889  journal = {Optics Communications},
     8890  year = {2002},
     8891  volume = {211},
     8892  pages = {53-63}
     8893}
     8894@article{Heintzmann2002,
     8895  author = {Heintzmann, R. and Jovin, T.M. and Cremer, C.},
     8896  title = {Saturated patterned excitation microscopy concept for optical resolution improvement},
     8897  journal = {Journal of Optical Society of America A},
     8898  year = {2002},
     8899  volume = {19},
     8900  number = {8},
     8901  pages = {1599-1609}
     8902}
     8903@inproceedings{Yu2000,
     8904  author = {Yu, W. and Daniilidis, K. and Sommer, G.},
     8905  title = {A New 3{D} Orientation Steerable Filter},
     8906  year = {2000},
     8907  pages = {203--212},
     8908  publisher = {Springer Verlag},
     8909  booktitle = {Symposium {f\"ur} Mustererkennung, DAGM 2000, Kiel, Germany}
     8910}
     8911@article{Yu2001,
     8912  author = {Yu, W. and Daniilidis, K. and Sommer, G.},
     8913  title = {Approximate Orientation Steerability Based on Angular Gaussians},
     8914  journal = {IEEE Transactions on Image Processing},
     8915  year = {2001},
     8916  volume = {10},
     8917  number = {2},
     8918  pages = {193--205},
     8919  month = {February}
     8920}
     8921@inbook{Arnison2003,
     8922  author = {Arnison, M.R. and Cogswell, C.J. and Sheppard, C.J.R. and {T\"or\"ork}, P.},
     8923  title = {Wavefront Coding Fluorescence Microscopy Using High Aperture Lenses},
     8924  year = {2003},
     8925  editor = {{T\"or\"ork}, P. and Kao, F.J.},
     8926  publisher = {Springer-Verlag},
     8927  series = {Optical imaging and microscopy - Techniques and Advanced Systems},
     8928  address = {Heidelberg, }
     8929}
     8930@article{Heintzmann2004,
     8931  author = {Heintzmann, R. and Lidke, K.A. and Jovin, T.M.},
     8932  title = {Double-pass Fourier transform imaging spectroscopy},
     8933  journal = {Optics Express},
     8934  year = {2004},
     8935  volume = {12},
     8936  pages = {753-763}
     8937}
     8938@article{Yu2003,
     8939  author = {Yu, W. and Sommer, G. and Daniilidis, K.},
     8940  title = {Three Dimensional Orientation Signatures with Conic Kernel Filtering for Multiple Motion Analysis},
     8941  journal = {Image and Vision Computing},
     8942  year = {2003},
     8943  volume = {21},
     8944  number = {5},
     8945  pages = {447--458}
     8946}
     8947@article{Hyun2000,
     8948  author = {Hyun Chung, D. and Sapiro, G.},
     8949  title = {On the Level Lines and Geometry of Vector Valued Images},
     8950  journal = {IEEE Signal Processing Letters},
     8951  year = {2000},
     8952  volume = {7},
     8953  pages = {241--243}
     8954}
     8955@article{Schellman1974,
     8956  author = {Schellman, J.A.},
     8957  title = {Flexibility of {DNA}},
     8958  journal = {Biopolymers},
     8959  year = {1974},
     8960  volume = {13},
     8961  number = {1},
     8962  pages = {217-226}
     8963}
     8964@article{Mastronarde1997,
     8965  author = {Mastronarde, D.N.},
     8966  title = {Dual-Axis Tomography: An Approach with Alignment Methods That Preserve Resolution},
     8967  journal = {Journal of Structural Biology},
     8968  year = {1997},
     8969  volume = {120},
     8970  pages = {343-352}
     8971}
     8972@article{Verveer2000,
     8973  author = {Verveer, P.J. and Squire, A. and Bastiaens, P.I.H.},
     8974  title = {Global Analysis of Fluorescence Lifetime Imaging Microscopy Data},
     8975  journal = {Biophysical Journal},
     8976  year = {2000},
     8977  volume = {78},
     8978  pages = {2127-2137}
     8979}
     8980@article{Hermann1993,
     8981  author = {Hermann, H. and Ohser, J.},
     8982  title = {Determination of Microstructural Parameters of Random Spatial Surface Fractals by Measuring Chord Length Distributions},
     8983  journal = {Journal of Microscopy},
     8984  year = {1993},
     8985  volume = {170, Pt 1},
     8986  pages = {87--93},
     8987  month = {April}
     8988}
     8989@article{Kuwahara1976,
     8990  author = {Kuwahara, M. and Hachimura, K. and Eiho, S. and Kinoshita, M.},
     8991  title = {Processing of RI-angiocardiographic images},
     8992  journal = {Digital Processing of Biomedical Images},
     8993  year = {1976},
     8994  pages = {187-203}
     8995}
     8996@article{Luo1998,
     8997  author = {Luo, D. and Barker, J. and McGrath, J.C. and Daly, C.J.},
     8998  title = {Iterative Multilevel Thresholding and Splitting for Three-Dimensional Segmentation of Live Cell Nuclei Using Laser Scanning Confocal Microscopy},
     8999  journal = {Journal of Computer-Assisted Microscopy},
     9000  year = {1998},
     9001  volume = {10},
     9002  number = {4},
     9003  pages = {151--162}
     9004}
     9005@article{Jaffer1993,
     9006  author = {Jaffer, A.},
     9007  title = {Algebra and the Lambda Calculus},
     9008  journal = {Dr. Dobbs's Journal},
     9009  year = {1993},
     9010  pages = {36--40},
     9011  month = {September}
     9012}
     9013@book{Stoecker2000,
     9014  author = {{St\"ocker}, H.},
     9015  title = {Taschenbuch der {Physik}},
     9016  year = {2000},
     9017  publisher = {Verlag Harri Deutsch},
     9018  address = {Frankfurt (Main)},
     9019  edition = {4}
     9020}
     9021@article{Mouche2001,
     9022  author = {Mouche, F. and Boisset, N. and Penczek, P.A.},
     9023  title = {Lumbricus terrestris Hemoglobin - The Architecture of Linker Chains and Structural Variation of the Central Toroid},
     9024  journal = {Journal of Structural Biology},
     9025  year = {2001},
     9026  volume = {133},
     9027  pages = {176-192}
     9028}
     9029@article{Mouche2003,
     9030  author = {Mouche, F. and Zhu, Y. and Pulokas, J. and Potter, C.S. and Carragher, B.},
     9031  title = {Automated three-dimensional reconstruction of keyhole limpet hemocyanin type 1},
     9032  journal = {Journal of Structural Biology},
     9033  year = {2003},
     9034  volume = {144},
     9035  pages = {301-312}
     9036}
     9037@article{Knuth1987,
     9038  author = {Knuth, D.E.},
     9039  title = {Digital Halftones by Dot Diffusion},
     9040  journal = {ACM Transactions on Graphics},
     9041  year = {1987},
     9042  volume = {6},
     9043  number = {4},
     9044  pages = {245--273},
     9045  month = {October}
     9046}
     9047@article{Scharstein2002,
     9048  author = {Scharstein, D. and Szeliski, R.},
     9049  title = {A Taxonomy and Evaluation of Dense Two-Frame Stereo Correspondence Algorithms},
     9050  journal = {International Journal of Computer Vision},
     9051  year = {2002},
     9052  volume = {47},
     9053  number = {1},
     9054  pages = {7--42},
     9055  month = {April-June}
     9056}
     9057@article{Teuner1995,
     9058  author = {Teuner, A. and Pichler, O. and Hosticka, B.J.},
     9059  title = {Unsupervised Texture Segmentation of Images Using Tuned Matched Gabor Filters},
     9060  journal = {IEEE Transactions on Image Processing},
     9061  year = {1995},
     9062  volume = {4},
     9063  number = {6},
     9064  pages = {863--870},
     9065  month = {June}
     9066}
     9067@article{Kubitscheck2002,
     9068  author = {Kubitscheck, U.},
     9069  title = {Single Protein Molecules Visualized and Tracked in the Interior of Eukaryotic Cells},
     9070  journal = {Single Molecule},
     9071  year = {2002},
     9072  volume = {3},
     9073  number = {5-6},
     9074  pages = {267-274}
     9075}
     9076@article{Wigner1932,
     9077  author = {Wigner, E.},
     9078  title = {On the Quantum Correction For Thermodynamic Equilibrium},
     9079  journal = {Physical Review},
     9080  year = {1932},
     9081  volume = {40},
     9082  number = {5},
     9083  pages = {749--759},
     9084  month = {June}
     9085}
     9086@phdthesis{Gokstorp1995,
     9087  author = {{G\"okstorp}, M.},
     9088  title = {Depth Computation in Robot Vision},
     9089  year = {1995},
     9090  address = {{Link\"oping}, Sweden},
     9091  school = {{Link\"oping} University}
     9092}
     9093@article{Zuccheri2001,
     9094  author = {Zuccheri, G. and Scipioni, A. and Cavaliere, V. and Gargiulo, G. and Sanits, P. de and Samori, B. },
     9095  title = {Mapping the intrinsic curvature and flexibility along the {DNA} chain},
     9096  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     9097  year = {2001},
     9098  volume = {98},
     9099  number = {6},
     9100  pages = {3074-3079}
     9101}
     9102@article{Singleton1969,
     9103  author = {Singleton, R.C.},
     9104  title = {An Algorithm for Computing the Mixed Radix Fast {Fourier} Transform},
     9105  journal = {IEEE Transactions on Audio and Electroacoustics},
     9106  year = {1969},
     9107  volume = {17},
     9108  number = {2},
     9109  pages = {93--103},
     9110  month = {June},
     9111  annote = {key_fft}
     9112}
     9113@article{Daubechies1990,
     9114  author = {Daubechies, I.},
     9115  title = {The Wavelet Transform, Time-Frequency Localization and Signal Analysis},
     9116  journal = {IEEE Transactions on Information Theory},
     9117  year = {1990},
     9118  volume = {36},
     9119  number = {5},
     9120  pages = {961--1005},
     9121  month = {September}
     9122}
     9123@inproceedings{Dubowy2005,
     9124  author = {Dubowy, J.N. and Herman, G.T.},
     9125  title = {An approach to the correction of distance-dependent defocus in electron microscopic reconstruction},
     9126  year = {2005},
     9127  volume = {3},
     9128  pages = {748-751},
     9129  series = {IEEE International Conference on Image Processing}
     9130}
     9131@article{Whittaker1934,
     9132  author = {Whittaker, J.M.},
     9133  title = {On Lidstone's Series and Two-point Expansions of Analytic Functions},
     9134  journal = {Proceedings London Math. Soc. (2)},
     9135  year = {1934},
     9136  volume = {36},
     9137  pages = {451--469}
     9138}
     9139@article{Unser2000,
     9140  author = {Unser, M.},
     9141  title = {Sampling -- 50 Years after {Shannon}},
     9142  journal = {Proceedings of the IEEE},
     9143  year = {2000},
     9144  volume = {88},
     9145  number = {4},
     9146  pages = {569--587},
     9147  month = {April}
     9148}
     9149@article{Edelman1999,
     9150  author = {Edelman, A. and McCorquodale, P. and Toledo, S.},
     9151  title = {The Future Fast {Fourier} Transform?},
     9152  journal = {SIAM Journal on Scientific Computing},
     9153  year = {1999},
     9154  volume = {20},
     9155  number = {3},
     9156  pages = {1094--1114},
     9157  annote = {key_fft}
     9158}
     9159@book{Jahne1997a,
     9160  author = {{J\"ahne}, B.},
     9161  title = {Practical handbook on Image Processing for Scientific Applications},
     9162  year = {1997},
     9163  publisher = {CRC Press}
     9164}
     9165@article{Brox2006,
     9166  author = {Brox, T. and Weickert, J. and Burgeth, B. and Mrazek, P.},
     9167  title = {Nonlinear structure tensor},
     9168  journal = {Image and Vision Computing},
     9169  year = {2006},
     9170  volume = {24},
     9171  pages = {41-55}
     9172}
     9173@article{Zheng2004,
     9174  author = {Zheng, Q.S. and Braunfeld, M.B. and Sedat, J.W. and Agard, D.A.},
     9175  title = {An improved strategy for automated electron microscopic tomography},
     9176  journal = {Journal of Structural Biology},
     9177  year = {2004},
     9178  volume = {147},
     9179  pages = {91-101}
     9180}
     9181@article{Chepic1990,
     9182  author = {Chepic, D.I. and Efros, A.L. and Ekimov, A.I. and Ivanov, M.G. and Kharchenko, V.A. and Kudriavtsev, I.A. and Yazeva, T.V.},
     9183  title = {Auger ionization of semiconductor quantum drops in a glass matrix},
     9184  journal = {Journal of Luminescence},
     9185  year = {1990},
     9186  volume = {47},
     9187  number = {3},
     9188  pages = {113-127}
     9189}
     9190@article{Frenken1993,
     9191  author = {Frenken, J.W.M. and Kuipers, L. and Sanders, J.B.},
     9192  title = {Thermal Roughening Investigated by Scanning Tunnelling Microscopy},
     9193  journal = {Faraday Discussions},
     9194  year = {1993},
     9195  volume = {95},
     9196  pages = {27--36}
     9197}
     9198@article{Hilton1995,
     9199  author = {Hilton, A. and Illingworth, J. and Windeatt, T.},
     9200  title = {Statistics of surface curvature estimates},
     9201  journal = {Pattern Recognition},
     9202  year = {1995},
     9203  volume = {28},
     9204  number = {8},
     9205  pages = {1201--1221}
     9206}
     9207@article{Voort1995,
     9208  author = {T.M. van der Voort and K.C. Strassers},
     9209  title = {Restoration of confocal images for quantitative image analysis},
     9210  journal = {J. Microscopy},
     9211  year = {1995},
     9212  volume = {178},
     9213  pages = {165--181}
     9214}
     9215@article{Schatzman1996,
     9216  author = {Schatzman, J.C.},
     9217  title = {Index Mappings for the Fast {Fourier} Transform},
     9218  journal = {IEEE Transactions on Signal Processing},
     9219  year = {1996},
     9220  volume = {44},
     9221  number = {3},
     9222  pages = {717--719},
     9223  month = {March},
     9224  annote = {key_fft}
     9225}
     9226@misc{WeickertXXXX,
     9227  author = {Weickert, J.},
     9228  title = {Nonlinear Diffusion Scale-Spaces}
     9229}
     9230@book{Reimer1997,
     9231  author = {Reimer, L.},
     9232  title = {Transition Electron Microscopy},
     9233  year = {1997},
     9234  publisher = {Springer Verlag},
     9235  address = {Berlin},
     9236  edition = {4th},
     9237  note = {sold out, reprint 2006}
     9238}
     9239@article{Fukano2003,
     9240  author = {Fukano, T. and Miyawaki, A.},
     9241  title = {Whole-Field Fluorescence Microscope with Digital Micromirror Device: Imaging of Biological Samples},
     9242  journal = {Applied Optics},
     9243  year = {2003},
     9244  volume = {42},
     9245  number = {19},
     9246  pages = {4119-4124}
     9247}
     9248@article{Lifshitz1990,
     9249  author = {Lifshitz, L.M. and Pizer, S.M.},
     9250  title = {A Multiresolution Hierarchical Approach to Image Segmentation Based on Intensity Extrema},
     9251  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     9252  year = {1990},
     9253  volume = {12},
     9254  number = {6},
     9255  pages = {529--540},
     9256  month = {June}
     9257}
     9258@article{Zenzo1986,
     9259  author = {Zenzo, S. di},
     9260  title = {A Note on the Gradient of a Multi-Image},
     9261  journal = {Computer Vision, Graphics and Image Processing},
     9262  year = {1986},
     9263  volume = {33},
     9264  pages = {116--125}
     9265}
     9266@article{Ranson2001,
     9267  author = {Ranson, N.A. and Farr, G.W. and Roseman, A.M. and Gowen, B. and Fenton, W.A. and Horwich, A.L. and Saibil, H.R.},
     9268  title = {{ATP}-Bound States of {GroEL} Captured by Cryo-Electron Microscopy},
     9269  journal = {Cell},
     9270  year = {2001},
     9271  volume = {107},
     9272  pages = {869-879}
     9273}
     9274@article{Fukano2004,
     9275  author = {Fukano, T. and Hama, H. and Miyawaki, A.},
     9276  title = {Similar diffusibility of membrane proteins across the axon-soma and dendrite-soma boundaries revealed by a novel {FRAP} technique},
     9277  journal = {Journal of Structural Biology},
     9278  year = {2004},
     9279  volume = {147},
     9280  pages = {12-18}
     9281}
     9282@article{Pape1999,
     9283  author = {Pape, H. and Clauser, C. and Iffland, J.},
     9284  title = {Permeability prediction based on fractal pore-space geometry},
     9285  journal = {Geophysics},
     9286  year = {1999},
     9287  volume = {64},
     9288  number = {5},
     9289  pages = {1447--1460},
     9290  month = {September/October}
     9291}
     9292@article{Ritchie1984,
     9293  author = {Ritchie, D.M.},
     9294  title = {The Evolution of the Unix Time-sharing System},
     9295  journal = {{AT\&T} Bell Laboratories Technical Journal},
     9296  year = {1984},
     9297  volume = {63},
     9298  number = {6},
     9299  pages = {1577-1593},
     9300  month = {October}
     9301}
     9302@article{Streekstra2001,
     9303  author = {Streekstra, G.J. and Boomgaard, R. van den and Smeulders, A.W.M.},
     9304  title = {Scale dependent differential geometry for the measurement of center line and diameter in 3d curvilinear structures},
     9305  journal = {International Journal of Computer Vision},
     9306  year = {2001},
     9307  volume = {42},
     9308  number = {3},
     9309  pages = {177-189}
     9310}
     9311@article{Jares-Erijman1996,
     9312  author = {Jares-Erijman, E.A. and Jovin, T.M.},
     9313  title = {Determination of DNA Helical Handedness by Fluorescence Resonance Energy Transfer},
     9314  journal = {Journal of Molecular Biology},
     9315  year = {1996},
     9316  volume = {257},
     9317  number = {3},
     9318  pages = {597-617}
     9319}
     9320@article{Dologlou1991,
     9321  author = {Dologlou, I. and Carayannis, G.},
     9322  title = {Physical Interpretation of Signal Reconstruction from Reduced Rank Matrices},
     9323  journal = {IEEE Transactions on Signal Processing},
     9324  year = {1991},
     9325  volume = {39},
     9326  number = {7},
     9327  pages = {1681--1682},
     9328  month = {July}
     9329}
     9330@article{Dologlou1996,
     9331  author = {Dologlou, I. and Pesquet, J.-C. and Skowronski, J.},
     9332  title = {Projection-based Rank Reduction Algorithms for Multichannel Modeling and Image Compression},
     9333  journal = {Signal Processing},
     9334  year = {1996},
     9335  volume = {48},
     9336  number = {2},
     9337  pages = {97--109}
     9338}
     9339@article{Sethi1987,
     9340  author = {Sethi, I.K. and Jain, R. },
     9341  title = {Finding trajectories of feature points in monocular image sequences},
     9342  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     9343  year = {1987},
     9344  volume = {9},
     9345  pages = {56--73}
     9346}
     9347@phdthesis{Whitaker1993a,
     9348  author = {Whitaker, R.T.},
     9349  title = {Geometry-Limited Diffusion},
     9350  year = {1993},
     9351  school = {The University of North Carolina, Chapel Hill, North Carolina}
     9352}
     9353@article{Unser1995a,
     9354  author = {Unser, Michael and Aldroubi, Akram and Eden, Murray},
     9355  title = {Enlargement or reduction of digital images with minimum loss of information},
     9356  journal = {IEEE Transactions on Image Processing},
     9357  year = {1995},
     9358  volume = {4},
     9359  number = {3},
     9360  pages = {247-258}
     9361}
     9362@article{Hubel1962,
     9363  author = {Hubel, D.H. and Wiesel, T.N.},
     9364  title = {Receptive fields, binocular interaction and functional architecture in the cat's visual cortex},
     9365  journal = {The Journal of Physiology},
     9366  year = {1962},
     9367  volume = {160},
     9368  pages = {106-154}
     9369}
     9370@article{Young1985,
     9371  author = {Young, I.T.},
     9372  title = {Estimation of Sampling Errors},
     9373  journal = {Cytometry},
     9374  year = {1985},
     9375  volume = {6},
     9376  pages = {273--275}
     9377}
     9378@phdthesis{Nordberg1994a,
     9379  author = {Nordberg, K.},
     9380  title = {Signal Representation and Processing using Operator Groups},
     9381  year = {1994},
     9382  address = {{Link\"oping}, Sweden},
     9383  school = {{Link\"oping University}}
     9384}
     9385@article{Young1988,
     9386  author = {Young, I.T.},
     9387  title = {Sampling Density and Quantitative Microscopy},
     9388  journal = {Analytic and Quantitative Cytology Histology},
     9389  year = {1988},
     9390  volume = {10},
     9391  number = {4},
     9392  pages = {269--275}
     9393}
     9394@article{Alvarez1992,
     9395  author = {Alvarez, L. and Lions, P. and Morel, J.},
     9396  title = {Image selective smoothing and edge detection by nonlinear diffusion {II}},
     9397  journal = {SIAM J. Numer. Anal.},
     9398  year = {1992},
     9399  volume = {29},
     9400  number = {3},
     9401  pages = {845--866},
     9402  month = {June}
     9403}
     9404@article{Deriche1990,
     9405  author = {Deriche, R.},
     9406  title = {Fast Algorithms for Low-Level Vision},
     9407  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     9408  year = {1990},
     9409  volume = {12},
     9410  number = {1},
     9411  pages = {78--87},
     9412  month = {January}
     9413}
     9414@article{Sartor2001,
     9415  author = {Sartor, L. J. and Weeks, A. R.},
     9416  title = {Morphological Operations on Color Images},
     9417  journal = {Journal of Electronic Imaging},
     9418  year = {2001},
     9419  volume = {10},
     9420  number = {2},
     9421  pages = {548-559}
     9422}
     9423@article{Rohr1997,
     9424  author = {Rohr, K.},
     9425  title = {On 3D Differential Operators for Detecting Point Landmarks},
     9426  journal = {Image and Vision Computing},
     9427  year = {1997},
     9428  volume = {15},
     9429  pages = {219--233}
     9430}
     9431@inproceedings{Luengo1999,
     9432  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
     9433  title = {Resolution Enhancement of a Sequence of Undersampled Shifted Images},
     9434  year = {1999},
     9435  pages = {95--102},
     9436  editor = {Boasson, M. and Kaandorp, J.A. and Tonino, J.F.M. and Vosselman, M.G.},
     9437  booktitle = {ASCI'99, Proc. 5th Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands)},
     9438  organization = {ASCI, Delft}
     9439}
     9440@article{Sandberg2003,
     9441  author = {Sandberg, K. and Mastronarde, D.N. and Beylkin, G.},
     9442  title = {A fast reconstruction algorithm for electron microscope tomography},
     9443  journal = {Journal of Structural Biology},
     9444  year = {2003},
     9445  volume = {144},
     9446  pages = {61-72}
     9447}
     9448@article{Grigorieff1998,
     9449  author = {Grigorieff, N.},
     9450  title = {Three-dimensional Structure of Bovine {NADH}:Ubiquinone Oxidoreductase (Complex {I}) at {22\AA} in Ice},
     9451  journal = {Journal of Molecular Biology},
     9452  year = {1998},
     9453  volume = {277},
     9454  pages = {1033-1046}
     9455}
     9456@inproceedings{Smith1984,
     9457  author = {Smith, M.J. and Barnwell, T.P.},
     9458  title = {A Procedure for Designing Exact Reconstruction Filter Banks for Tree Structured Sub-Band Coders},
     9459  year = {1984},
     9460  pages = {27.1.1--27.1.4},
     9461  month = {March},
     9462  address = {San Diego, U.S.A.},
     9463  booktitle = {Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing}
     9464}
     9465@article{Santos2000,
     9466  author = {Santos, A. and Young, I.T.},
     9467  title = {Model-based resolution - applying the theory in quantitative microscopy},
     9468  journal = {Applied Optics},
     9469  year = {2000},
     9470  volume = {39},
     9471  number = {17},
     9472  pages = {2948-2958}
     9473}
     9474@article{Vossepoel1988,
     9475  author = {Vossepoel, A.M.},
     9476  title = {A note on distance transformations in digital images},
     9477  journal = {Computer Vision, Graphics, and Image Processing},
     9478  year = {1988},
     9479  volume = {43},
     9480  pages = {88-97}
     9481}
     9482@article{Garboczi1995,
     9483  author = {Garboczi, E.J. and Snyder, K.A. and Douglas, J.F. and Thorpe, M.F.},
     9484  title = {Geometrical percolation threshold of overlapping ellipsoids},
     9485  journal = {Physical Review E},
     9486  year = {1995},
     9487  volume = {52},
     9488  number = {1},
     9489  month = {July}
     9490}
     9491@article{Wu2000,
     9492  author = {Wu, L. and Zhu, Y. and Tafto, J.},
     9493  title = {Picometer Accuracy in Measuring Lattice Displacements Across Planar Faults by Interferometry in Coherent Electron Diffraction},
     9494  journal = {Physical Review Letters},
     9495  year = {2000},
     9496  volume = {85},
     9497  number = {24},
     9498  pages = {5126-5129}
     9499}
     9500@article{Vossepoel1982,
     9501  author = {Vossepoel, A.M. and Smeulders, A.W.M.},
     9502  title = {Vector code probability and metrication error in the representation of straight lines of finite length},
     9503  journal = {Computer Graphics and Image Processing},
     9504  year = {1982},
     9505  volume = {20},
     9506  pages = {347-364}
     9507}
     9508@article{Lazar2003,
     9509  author = {Lazar, S. and Botton, G.A. and Wu, M.-Y. and Tichelaar, F.D. and Zandbergen, H.W.},
     9510  title = {Materials science applications of {HREELS} in near edge structure analysis and low-energy loss spectroscopy},
     9511  journal = {Ultramicroscopy},
     9512  year = {2003},
     9513  volume = {96},
     9514  pages = {533-546}
     9515}
     9516@article{Muller1995,
     9517  author = {Muller, D.A. and Silcox, J.},
     9518  title = {Delocalization in inelastic scattering},
     9519  journal = {Ultramicroscopy},
     9520  year = {1995},
     9521  volume = {59},
     9522  pages = {195-213}
     9523}
     9524@mastersthesis{Brusse1995,
     9525  author = {Brusse, H.},
     9526  title = {Quantitative structuuranalyse van aardlagen op basis van boorgatbeelden},
     9527  year = {1995},
     9528  month = {August},
     9529  school = {Delft University of Technology},
     9530  note = {in {D}utch}
     9531}
     9532@book{JAEHNE,
     9533  author = {{J\"ahne}, B.},
     9534  title = {Practical Handbook on Image Processing for Scientific Applications},
     9535  year = {1997},
     9536  publisher = {CRC Press},
     9537  address = {New York}
     9538}
     9539@article{Lazar2004,
     9540  author = {Lazar, S. and {H\'ebert}, C. and Zandbergen, H.W.},
     9541  title = {Investigation of hexagonal and cubic {GaN} by high-resolution electron energy-loss spectroscopy and density functional theory},
     9542  journal = {Ultramicroscopy},
     9543  year = {2004},
     9544  volume = {98},
     9545  pages = {249-257}
     9546}
     9547@article{Huang1998,
     9548  author = {Huang, N.E. and Shen, Z. and Long, S.R. and Wu, M.C. and Shih, H.H. and Zheng, Q. and Yen, N.-C. and Tung, C.C. and Liu, H.H.},
     9549  title = {The Empirical Mode Decomposition and the {Hilbert} Spectrum for Nonlinear and Non-stationary Time Series Analysis},
     9550  journal = {Proceedings of the Royal Society of London A},
     9551  year = {1998},
     9552  volume = {454},
     9553  pages = {903--995}
     9554}
     9555@article{Huang1995,
     9556  author = {Huang, C.-L. and Chen, Y.-T.},
     9557  title = {Motion Estimation method using a 3D steerable filter},
     9558  journal = {Image and Vision Computing},
     9559  year = {1995},
     9560  volume = {13},
     9561  number = {1},
     9562  pages = {21--32},
     9563  month = {February}
     9564}
     9565@article{Peh2002,
     9566  author = {Peh, C.-H. and Loong-Fah Cheong},
     9567  title = {Synergizing spatial and temporal texture},
     9568  journal = {IEEE Transactions on Image Processing},
     9569  year = {2002},
     9570  volume = {11},
     9571  number = {10},
     9572  pages = {1179--1191}
     9573}
     9574@article{Lee1983,
     9575  author = {Lee, J.-S.},
     9576  title = {Digital Image Smoothing and the Sigma Filter},
     9577  journal = {Computer Vision, Graphics, and Image Processing},
     9578  year = {1983},
     9579  volume = {24},
     9580  pages = {255--270}
     9581}
     9582@inproceedings{Buhr2003,
     9583  author = {Buhr, E. and {G\"unther}-Kohfahl, S. and Neitzel, U.},
     9584  title = {Simple method for modulation transfer function determination of digital imaging detectors from edge images},
     9585  year = {2003},
     9586  volume = {5030,3},
     9587  month = {16-18 February},
     9588  address = {San Diego, California, USA},
     9589  booktitle = {Proceedings of SPIE}
     9590}
     9591@inproceedings{Lee1984,
     9592  author = {Lee, B.G.},
     9593  title = {{FCT} - a fast cosine transform},
     9594  year = {1984},
     9595  pages = {28A.3.1-28A.3.4},
     9596  booktitle = {Proc. IEEE ICASSP},
     9597  annote = {key_fft}
     9598}
     9599@article{Feret1931,
     9600  author = {Feret, L.R.},
     9601  title = {La Grosseur des Grains},
     9602  journal = {Assoc. Intern. Essais Math. 2D, Zurich},
     9603  year = {1931}
     9604}
     9605@article{Bunt2004,
     9606  author = {Bunt, G. and Wouters, F.S.},
     9607  title = {Visualization of Molecular Activities Inside Living Cells with Fluorescent Labels},
     9608  journal = {International Review of Cytology},
     9609  year = {2004},
     9610  volume = {237},
     9611  pages = {205-280}
     9612}
     9613@article{Vaidyanathan1987,
     9614  author = {Vaidyanathan, P.P.},
     9615  title = {Quadrature Mirror Filter Banks, M-Band Extensions and Perfect-Reconstruction Techniques},
     9616  journal = {IEEE Acoustics, Speech, and Signal Processing Magazine},
     9617  year = {1987},
     9618  volume = {4},
     9619  number = {3},
     9620  pages = {4--20},
     9621  month = {July}
     9622}
     9623@inproceedings{Knutsson2003,
     9624  author = {Knutsson, H. and Anderson, M.},
     9625  title = {Loglets: Generalized Quadrature and Phase for Local Spatio-Temporal Structure Estimation},
     9626  year = {2003},
     9627  pages = {741-748},
     9628  month = {June 29 -July 2},
     9629  editor = {{Big\"un}, J. and Gustavsson, T.},
     9630  publisher = {Springer-Verlag},
     9631  series = {LNCS 2749},
     9632  address = {Berlin},
     9633  booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) }
     9634}
     9635@article{Mokhtarian1992,
     9636  author = {Mokhtarian, F. and Machworth, A.K.},
     9637  title = {A Theory of Multiscale, Curvature-Based Shape Representation for Planar Curves},
     9638  journal = {IEEE Transactions on Pattern Analysis and Machine Analysis},
     9639  year = {1992},
     9640  volume = {14},
     9641  number = {8},
     9642  pages = {789--805},
     9643  month = {August}
     9644}
     9645@article{Lin1986,
     9646  author = {Lin, J.A. and Cowley, J.M.},
     9647  title = {Calibration of the operating parameters for an {HB5 STEM} instrument},
     9648  journal = {Ultramicroscopy},
     9649  year = {1986},
     9650  volume = {19},
     9651  pages = {31-42}
     9652}
     9653@article{Zack1977,
     9654  author = {Zack, G.W. and Rogers, W.E. and Latt, S.A.},
     9655  title = {Automatic Measurement of Sister Chromatid Exchange Frequency},
     9656  journal = {Journal of Histochemistry and Cytochemistry},
     9657  year = {1977},
     9658  volume = {25},
     9659  number = {7},
     9660  pages = {741--753}
     9661}
     9662@article{Bewersdorf2006,
     9663  author = {Bewersdorf, J. and Schmidt, R. and Hell, S.W.},
     9664  title = {Comparison of {I$^5$M} and {4Pi}-microscopy},
     9665  journal = {Journal of Microscopy},
     9666  year = {2006},
     9667  volume = {222},
     9668  pages = {105-117}
     9669}
     9670@inproceedings{Leung1998,
     9671  author = {Leung, T. and Malik, J.},
     9672  title = {Contour Continuity in Region Based Image Segmentation},
     9673  year = {1998},
     9674  month = {June},
     9675  booktitle = {5th. Euro. Conf. Computer Vision, Freiburg, Germany }
     9676}
     9677@article{Kempen2000,
     9678  author = {Kempen, G.M.P. van and Vliet, L.J. van},
     9679  title = {Background estimation in nonlinear image restoration},
     9680  journal = {Journal of the Optical Society of America},
     9681  year = {2000},
     9682  volume = {17},
     9683  number = {3},
     9684  pages = {425-434}
     9685}
     9686@article{Nellist2004,
     9687  author = {Nellist, P.D. and Chisholm, M.F. and Dellby, N. and Krivanek, O.L. and Murfitt, M.F. and Szilagyi, Z.S. and Lupini, A.R. and Borisevick, A. and Sides, W.H. jr. and Pennycook, S.J. },
     9688  title = {Direct Sub-Angstrom Imaging of a Crystal Lattice},
     9689  journal = {Science},
     9690  year = {2004},
     9691  volume = {305},
     9692  pages = {1741}
     9693}
     9694@article{Liu1997,
     9695  author = {S-C. Liu and S. Chang},
     9696  title = {Dimension Estimation of Discrete-Time Fractional Brownian Motion with Application to Image Texture Classification},
     9697  journal = {IEEE Transaction on Image Processing},
     9698  year = {1997},
     9699  volume = {6},
     9700  number = {8},
     9701  pages = {1176-1184}
     9702}
     9703@article{Keenan2004,
     9704  author = {Keenan, M.R. and Kotula, P.G.},
     9705  title = {Accounting for Poisson noise in the multivariate analysis of {ToF-SIMS} spectrum images},
     9706  journal = {Surface and Interface Analysis},
     9707  year = {2004},
     9708  volume = {36},
     9709  number = {3},
     9710  pages = {203-212}
     9711}
     9712@book{Gelfand1964,
     9713  author = {{Gel'fand}, I.M. and Shilov, G.E.},
     9714  title = {Generalized Functions. Volume 1, Properties and Operations},
     9715  year = {1964},
     9716  publisher = {Academic Press}
     9717}
     9718@book{Gelfand1966,
     9719  author = {{Gel'fand}, I.M. and Graev, M.I. and Vilenkin, N.Ya.},
     9720  title = {Generalized Functions. Volume 5, Integral Geometry and Representation Theory},
     9721  year = {1966},
     9722  publisher = {Academic Press}
     9723}
     9724@techreport{Lindeberg1998b,
     9725  author = {Lindeberg, T.},
     9726  title = {Principles for Automatic Scale Selection},
     9727  year = {1998},
     9728  number = {ISRN KTH/NA/P-98/14-SE},
     9729  month = {August},
     9730  address = {Stockholm, Sweden},
     9731  institution = {Computational Vision and Active Perception Laboratory, Royal Institute of Technology}
     9732}
     9733@article{Lindeberg1998a,
     9734  author = {Lindeberg, T.},
     9735  title = {Edge Detection and Ridge Detection with Automatic Scale Selection},
     9736  journal = {International Journal of Computer Vision},
     9737  year = {1998},
     9738  volume = {30},
     9739  number = {2},
     9740  pages = {117--154}
     9741}
     9742@article{Koenderink1999,
     9743  author = {Koenderink, J.J. and Doorn, A.J. van},
     9744  title = {The Structure of Locally Orderless Images},
     9745  journal = {International Journal of Computer Vision},
     9746  year = {1999},
     9747  volume = {31},
     9748  number = {2/3},
     9749  pages = {159--168}
     9750}
     9751@inproceedings{Kalitzin1997,
     9752  author = {Kalitzin, S.N. and ter Haar Romeny, B.M. and Viergever, M.A.},
     9753  title = {Invertible Orientation Bundles on 2D Scalar Images},
     9754  year = {1997},
     9755  pages = {77--88},
     9756  month = {July},
     9757  publisher = {Springer-Verlag},
     9758  series = {Lecture Notes in Computer Science},
     9759  booktitle = {Proceedings of the First International Conference on Scale-Space Theory in Computer Vision}
     9760}
     9761@article{Koenderink1992,
     9762  author = {Koenderink, J.J. and Doorn, A.J. van},
     9763  title = {Generic Neighborhood Operators},
     9764  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     9765  year = {1992},
     9766  volume = {14},
     9767  number = {6},
     9768  pages = {597--605},
     9769  month = {June}
     9770}
     9771@article{Koenderink1990,
     9772  author = {Koenderink, J.J. and Doorn, A.J. van},
     9773  title = {Receptive Field Families},
     9774  journal = {Biological Cybernetics},
     9775  year = {1990},
     9776  volume = {63},
     9777  pages = {291--297}
     9778}
     9779@inproceedings{Haussecker1996,
     9780  author = {{Hau\ss ecker}, H. and {J\"ahne}, B.},
     9781  title = {A Tensor Approach for Local Structure Analysis in Multi-Dimensional Images},
     9782  year = {1996},
     9783  pages = {171--178},
     9784  month = {November 18--19},
     9785  editor = {Girod, B. and Niemann, H. and Seidel, H.-P.},
     9786  series = {Proceedings in Artificial Intelligence 3},
     9787  booktitle = {Proceedings 3D Image Analysis and Synthesis},
     9788  organization = {{Universit\"at} Erlangen-{N\"urnberg}}
     9789}
     9790@article{Kalitzin1999,
     9791  author = {Kalitzin, S.N. and Haar Romeny, B. ter and Viergever, M.A.},
     9792  title = {Invertible Apertured Orientation filters in Image Analysis},
     9793  journal = {International Journal of Computer Vision},
     9794  year = {1999},
     9795  volume = {31},
     9796  number = {2/3},
     9797  pages = {145--158}
     9798}
     9799@inproceedings{Haussecker1997,
     9800  author = {{Hau\ss ecker}, H. and {J\"ahne}, B.},
     9801  title = {A tensor approach for precise computation of dense displacement vector fields},
     9802  year = {1997},
     9803  pages = {199--208},
     9804  month = {September 15-17},
     9805  editor = {Paulus, E. and Wahl, F.M.},
     9806  publisher = {Springer},
     9807  series = {Informatik Aktuell},
     9808  booktitle = {Proc. Mustererkennung 1997 (Braunschweig, Germany)}
     9809}
     9810@inproceedings{Vliet1993a,
     9811  author = {Vliet, L.J. van and Verbeek, P.W.},
     9812  title = {Curvature and Bending Energy in Digitized 2D and 3D Images},
     9813  year = {1993},
     9814  pages = {1403--1410},
     9815  booktitle = {8th Scandinavian Conference on Image Analysis, {Troms\o } Norway}
     9816}
     9817@article{Cam1994,
     9818  author = {Cam, E. le and Fack, F. and Menissier-de Murcia, J. and Cognet, J.A.H. and Barbin, A. and Sarantoglou, V. and Revet, B. and Delain, E. and Murcia, G. de},
     9819  title = {Conformational Analysis of a 139 Base-pair {DNA} Fragment Containing a Single-stranded Break and Its Interaction with {Human Poly(ADP-ribose)} Polymerase},
     9820  journal = {Journal of Molecular Biology},
     9821  year = {1994},
     9822  volume = {235},
     9823  number = {3},
     9824  pages = {1062-1071}
     9825}
     9826@article{Digman2005,
     9827  author = {Digman, M.A. and Sengupta, P. and Wiseman, P.W. and Brown, C.M. and Howritz, A.R. and Grattown, E.},
     9828  title = {Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure},
     9829  journal = {Biophysical Journal - Biophysical Letters},
     9830  year = {2005}
     9831}
     9832@article{Bangham1996a,
     9833  author = {Bangham, J.A. and Ling, P.D. and Harvey, R.},
     9834  title = {Scale-Space From Nonlinear Filters},
     9835  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     9836  year = {1996},
     9837  volume = {18},
     9838  number = {5},
     9839  pages = {520--528}
     9840}
     9841@article{Talbot2000,
     9842  author = {Talbot, H. and Lee, T. and Jeulin, D. and Hanton, D. and Hobbs, L.W.},
     9843  title = {Image Analysis of Insulation Mineral Fibres},
     9844  journal = {Journal of Microscopy},
     9845  year = {2000},
     9846  volume = {200, Pt 3},
     9847  pages = {251--268},
     9848  month = {December}
     9849}
     9850@article{Dietrich2004,
     9851  author = {Dietrich, H.R.C. and Knoll, J. and Doel, L.R. van den and Dedem, G.W.K. van and Daran-Lapujade, P.A.S. and Vliet, L.J. van and Moerman, R. and Pronk, J.R. and Young, I.T.},
     9852  title = {Nanoarrays: A Method for Performing Enzymatic Assays},
     9853  journal = {Analytical Chemistry},
     9854  year = {2004},
     9855  volume = {76},
     9856  number = {14},
     9857  pages = {4112-4117}
     9858}
     9859@inproceedings{Laptev2003,
     9860  author = {Laptev, I. and Lindeberg, T.},
     9861  title = {Interest point detection and scale-selection in space-time},
     9862  year = {2003},
     9863  volume = {2695},
     9864  pages = {372-387},
     9865  editor = {Griffin, L.D. and Lillholm, M.},
     9866  series = {Lecture Notes on Computer Science },
     9867  address = {Isle of Skye, United Kingdom},
     9868  booktitle = {Proceedings of the fourth Int. Conf. on Scale Space}
     9869}
     9870@article{Thomson1982,
     9871  author = {Thomson, D.J.},
     9872  title = {Spectrum Estimation and Harmonic Analysis},
     9873  journal = {Proceedings of the IEEE},
     9874  year = {1982},
     9875  volume = {70},
     9876  number = {9},
     9877  pages = {1055--1096},
     9878  month = {September}
     9879}
     9880@misc{Dorst1999a,
     9881  author = {Dorst, L.},
     9882  title = {{Clifford} Algebra: a Practical Tool for Efficient Geometrical Representation},
     9883  year = {1999},
     9884  note = {Tutorial presentation}
     9885}
     9886@phdthesis{Hansen1995,
     9887  author = {Hansen, M.B.},
     9888  title = {Spatial Statistics for Network Structures in Processed Milk},
     9889  year = {1995},
     9890  address = {Copenhagen, Denmark},
     9891  school = {The Royal Veterinary and Agricultural University Copenhagen}
     9892}
     9893@article{Hansen1999,
     9894  author = {Hansen, M.B. and Baddeley, A.J. and Gill, R.D.},
     9895  title = {First Contact Distributions for Spatial Patterns: Regularity and Estimation},
     9896  journal = {Advances in Applied Probability},
     9897  year = {1999},
     9898  volume = {31},
     9899  number = {1},
     9900  pages = {15--33}
     9901}
     9902@article{Stockman1977,
     9903  author = {Stockman, G.C. and Agrawala, A.K.},
     9904  title = {Equivalence of {Hough} Curve Detection to Template Matching},
     9905  journal = {Communications of the {ACM}},
     9906  year = {1977},
     9907  volume = {20},
     9908  number = {11},
     9909  pages = {820--822},
     9910  annote = {key_radon}
     9911}
     9912@article{Li1994a,
     9913  author = {Li, B.C. and Ma, S.D.},
     9914  title = {Approximation of an Arbitrary Filter and its Recursive Implementation},
     9915  journal = {Pattern Recognition},
     9916  year = {1994},
     9917  volume = {27},
     9918  number = {12},
     9919  pages = {1767--1774}
     9920}
     9921@article{Endres1997,
     9922  author = {Endres, A.L. and Knight, R.J.},
     9923  title = {Incorporating Pore Geometry and Fluid Pressure Communication into Modeling the Elastic Behavior of Porous Rocks},
     9924  journal = {Geophysics},
     9925  year = {1997},
     9926  volume = {62},
     9927  number = {1},
     9928  pages = {106--117},
     9929  month = {January/February}
     9930}
     9931@article{Hansen1997,
     9932  author = {Hansen, K. and Andersen, J.D.},
     9933  title = {Understanding the {Hough} Transform: {Hough} Cell Support and its Utilization},
     9934  journal = {Image and Vision Computing},
     9935  year = {1997},
     9936  volume = {15},
     9937  number = {3},
     9938  pages = {205--218}
     9939}
     9940@article{Maxwell1870,
     9941  author = {Maxwell, J.C.},
     9942  title = {On Hills and Dales},
     9943  journal = {The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science},
     9944  year = {1870},
     9945  volume = {40},
     9946  number = {269},
     9947  pages = {421--427}
     9948}
     9949@article{Qian2000,
     9950  author = {Qian, H. and Elson, E.L.},
     9951  title = {Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials},
     9952  journal = {Biophysical Journal},
     9953  year = {2000},
     9954  volume = {79},
     9955  pages = {137-143}
     9956}
     9957@article{Jain2000,
     9958  author = {Jain, A.K. and Duin, R.P.W. and Mao, J.},
     9959  title = {Statistical Pattern Recognition: A Review},
     9960  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     9961  year = {2000},
     9962  volume = {22},
     9963  number = {1},
     9964  pages = {4--37}
     9965}
     9966@article{Watson1953,
     9967  author = {Watson, J.D. and Crick, F.H.C.},
     9968  title = {Molecular Structure of Nucleic Acids},
     9969  journal = {Nature},
     9970  year = {1953},
     9971  volume = {171},
     9972  number = {4356},
     9973  pages = {737--738},
     9974  month = {April}
     9975}
     9976@inproceedings{Knutsson1989kort,
     9977  author = {Knutsson, H.},
     9978  title = {Representing Local Structure Using Tensors },
     9979  year = {1989},
     9980  pages = {244--251},
     9981  booktitle = {SCIA'89}
     9982}
     9983@article{Chadoeuf2000,
     9984  author = {Chadoeuf, J. and Brix, A. and Pierret, A. and Allard, D.},
     9985  title = {Testing Local Dependence of Spatial Structures on Images},
     9986  journal = {Journal of Microscopy},
     9987  year = {2000},
     9988  volume = {200, Pt 1},
     9989  pages = {32--41},
     9990  month = {October}
     9991}
     9992@article{Brock2003,
     9993  author = {Brock, R. and Jovin, T.M. },
     9994  title = {Quantitative image analysis of cellular protein translocation induced by magnetic microspheres: Application to the EGF receptor},
     9995  journal = {Cytometry Part A},
     9996  year = {2003},
     9997  volume = {52A},
     9998  pages = {1-11}
     9999}
     10000@article{Costes2004,
     10001  author = {Costes, S.V. and Daelemans, D. and Cho, E.H. and Dobbin, Z. and Pavlakis, G. and Lockett, S.},
     10002  title = {Automatic and Quantitative Measurement of Protein-Protein Colocalization in Live Cells},
     10003  journal = {Biophysical Journal},
     10004  year = {2004},
     10005  volume = {86},
     10006  pages = {3993-4003}
     10007}
     10008@article{Zhou2003,
     10009  author = {Zhou, Z.H. and Zhang, H. and Jakana, J. and Lu, X.-Y. and Zhang, J.-Q.},
     10010  title = {Cytoplasmic Ployhedrosis Virus Structure at 8 by Electron Cryomicroscopy: Structural Basis of Capsid Stability and {mRNA} Processing Regulation},
     10011  journal = {Structure},
     10012  year = {2003},
     10013  volume = {1},
     10014  pages = {651-663}
     10015}
     10016@article{Zhou2000,
     10017  author = {Zhou, Z.H. and Dougherty, M. Jakana, J. and He, J. and Rixon, F.J. and Chiu, W.},
     10018  title = {Seeing the Herpesvirus Capsid at 8.5},
     10019  journal = {Science},
     10020  year = {2000},
     10021  volume = {288},
     10022  pages = {877-880}
     10023}
     10024@article{Zhou2001,
     10025  author = {Zhou, Z.H. and McCarthy, D.B. and O'Conor, C.M. and Reed, L.J. and Stoops, J.K.},
     10026  title = {The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes},
     10027  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     10028  year = {2001},
     10029  volume = {98},
     10030  number = {26},
     10031  pages = {14802-14807}
     10032}
     10033@article{Medintz2004,
     10034  author = {Medintz, I.L. and Trammell, S.A. and Mattoussi, H. and Mauro, J.M.},
     10035  title = {Reversible Modulation of Quantum Dot Photoluminescence Using a Protein- Bound Photochromic Fluorescence Resonance Energy Transfer Acceptor},
     10036  journal = {Journal of the American Chemical Society},
     10037  year = {2004},
     10038  volume = {126},
     10039  pages = {30-31}
     10040}
     10041@article{Cherny2005,
     10042  author = {Cherny, D.I. and Brzdov4, M. and Pale\v{c}ek, J. and Pale\v{c}ek, E. and Jovin, T.M.},
     10043  title = {Sequestering of p53 into {DNA}-protein filaments revealed by electron microscopy},
     10044  journal = {Biophysical Chemistry},
     10045  year = {2005},
     10046  volume = {114},
     10047  number = {3},
     10048  pages = {261-271}
     10049}
     10050@article{Cherny2004,
     10051  author = {Cherny, D.I. and Hoyer, W. and Subramaniam, V. and Jovin, T.M.},
     10052  title = {Double-stranded {DNA} stimulates the fibrillation of $\alpha$-synuclein in vitro and is associated with the mature fibrils: An electron microscopy study},
     10053  journal = {Journal of Molecular Biology},
     10054  year = {2004},
     10055  volume = {344},
     10056  number = {4},
     10057  pages = {929-938}
     10058}
     10059@article{Cherny2001,
     10060  author = {Cherny, D.I. and Jovin, T.M.},
     10061  title = {Electron and scanning force microscopy studies of alterations in supercoiled {DNA} tertiary structure},
     10062  journal = {Journal of Molecular Biology},
     10063  year = {2001},
     10064  volume = {313},
     10065  number = {2},
     10066  pages = {295-307}
     10067}
     10068@article{Comer1999,
     10069  author = {Comer, M. L. and Delp, E. J.},
     10070  title = {Morphological Operations for Color Image Processing},
     10071  journal = {Journal of Electronic Imaging},
     10072  year = {1999},
     10073  volume = {8},
     10074  number = {3},
     10075  pages = {279-189}
     10076}
     10077@inproceedings{Farnebaeck2000,
     10078  author = {G. {Farneb\"ack}},
     10079  title = {Fast and {A}ccurate {M}otion {E}stimation using {O}rientation {T}ensors and {P}arametric {M}otion {M}odels},
     10080  year = {2000},
     10081  volume = {1},
     10082  pages = {135--139},
     10083  month = {September},
     10084  address = {Barcelona, Spain},
     10085  booktitle = {Proceedings of 15th International Conference on Pattern Recognition},
     10086  organization = {IAPR},
     10087  annote = {Also as Technical Report LiTH-ISY-R-2254}
     10088}
     10089@inproceedings{Farnebaeck2003,
     10090  author = {{Farneb\"ack}, G.},
     10091  title = {Two-Frame Motion Estimation Based on Polynomial Expansion},
     10092  year = {2003},
     10093  pages = {363-370},
     10094  month = {June 29 -July 2},
     10095  editor = {{Big\"un}, J. and Gustavsson, T.},
     10096  publisher = {Springer-Verlag},
     10097  series = {LNCS 2749},
     10098  address = {Berlin},
     10099  booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) }
     10100}
     10101@article{Freitag2005,
     10102  author = {Freitag, B. and Kujawa, S. and Mul, P.M. and Ringnalda, J. and Tiemeijer, P.C.},
     10103  title = {Breaking the spherical and chromatic aberration barrier in transmission electron microscopy},
     10104  journal = {Ultramicroscopy},
     10105  year = {2005},
     10106  volume = {102},
     10107  pages = {209-214}
     10108}
     10109@article{Lidke2005,
     10110  author = {Lidke, K.A. and Rieger, B. and Lidke, D.S. and Jovin, T.M.},
     10111  title = {The role of photon statistics in fluorescence anisotropy imaging},
     10112  journal = {IEEE Transactions on Image Processing},
     10113  year = {2005},
     10114  volume = {14},
     10115  number = {9},
     10116  pages = {1237-1245}
     10117}
     10118@article{Lidke2003,
     10119  author = {Lidke, D.S. and Nagy, P. and Barisas, B.G. and Heintzmann, R. and Post, J.N. and Lidke, K.A. and Clayton, A.H.A. and Arndt-Jovin, D.J. and Jovin, T.M.},
     10120  title = {Imaging molecular interactions in cells by dynamic and static fluorescence anisotropy ({rFLIM} and {emFRET})},
     10121  journal = {Biochemical Society Transactions},
     10122  year = {2003},
     10123  volume = {31},
     10124  number = {5},
     10125  pages = {1020-1027}
     10126}
     10127@article{Lidke2004,
     10128  author = {Lidke, D.S. and Nagy, P. and Heintzmann, R. and Arndt-Jovin, D.J. and Post, J.N. and Grecco, H. and Jares-Erijman, E.A. and Jovin, T.M.},
     10129  title = {Quantum dot ligands provide new insights into {erbB/HER} receptor-mediated signal transduction},
     10130  journal = {Nature Biotechnology},
     10131  year = {2004},
     10132  volume = {22},
     10133  number = {2},
     10134  pages = {198-203}
     10135}
     10136@article{Dubuc2001a,
     10137  author = {Dubuc, B. and Zucker, S.W.},
     10138  title = {Complexity, Confusion, and Perceptual Grouping. Part {II}: Mapping Complexity},
     10139  journal = {Journal of Mathematical Imaging and Vision},
     10140  year = {2001},
     10141  volume = {15},
     10142  number = {1--2},
     10143  pages = {83--116}
     10144}
     10145@article{Larkin2001a,
     10146  author = {Larkin, K.G.},
     10147  title = {Natural Demodulation of Two-Dimensional Fringe Patterns. {II}. Stationary Phase Analysis of the Spiral Phase Quadrature Transform},
     10148  journal = {Journal of the Optical Society of America A},
     10149  year = {2001},
     10150  volume = {18},
     10151  number = {8},
     10152  pages = {1871--1881},
     10153  month = {August}
     10154}
     10155@article{Salden1998,
     10156  author = {Salden, A.H. and ter Haar Romeny, B.M. and Viergever, M.A. },
     10157  title = {Differential Integral Geometry of Linear Scale-Space},
     10158  journal = {Journal of Mathematical Imaging and Vision},
     10159  year = {1998},
     10160  volume = {9},
     10161  pages = {5--27}
     10162}
     10163@misc{Lehar1994,
     10164  author = {Lehar, S.},
     10165  title = {Harmonic Resonance in Visual Perception Suggests a Novel Form of Neural Communication},
     10166  year = {1994},
     10167  note = {Rejected. Department of Cognitive and Neural Systems, Center for Adaptive Systems, Boston, U.S.A.}
     10168}
     10169@techreport{Luengo2003d,
     10170  author = {Luengo Hendriks, C.L. and Ginkel, M. van and Vliet, L.J. van},
     10171  title = {Underestimation of the Radius in the Radon Transform for Circles and Spheres},
     10172  year = {2003},
     10173  month = {May},
     10174  institution = {Pattern Recognition Group, Delft University of Technology},
     10175  note = {Technical Report PH-2003-02}
     10176}
     10177@inproceedings{Luengo2003c,
     10178  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
     10179  title = {Discrete Morphology with Line Structuring Elements},
     10180  year = {2003},
     10181  volume = {2756},
     10182  pages = {722-729},
     10183  editor = {Petkov, N. and Westenberg, M.A.},
     10184  publisher = {Springer-Verlag},
     10185  series = {Lecture Notes on Computer Science},
     10186  address = {Berlin},
     10187  booktitle = {Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, {\footnotesize CAIP} 2003}
     10188}
     10189@article{Stark1996,
     10190  author = {Stark, H. and Zemlin, F. and Boettcher, C.},
     10191  title = {Electron radiation damage to protein crystals of bacteriorhodopsin at different temperatures},
     10192  journal = {Ultramicroscopy},
     10193  year = {1996},
     10194  volume = {63},
     10195  pages = {75-70}
     10196}
     10197@inproceedings{Luengo2003b,
     10198  author = {Luengo Hendriks, C.L. and Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van},
     10199  title = {The Generalized Radon Transform: Sampling and Memory Considerations},
     10200  year = {2003},
     10201  volume = {2756},
     10202  pages = {681-688},
     10203  editor = {Petkov, N. and Westenberg, M.A.},
     10204  publisher = {Springer-Verlag},
     10205  series = {Lecture Notes on Computer Science},
     10206  address = {Berlin},
     10207  booktitle = {Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, {\footnotesize CAIP} 2003}
     10208}
     10209@article{Cariolaro1998,
     10210  author = {Cariolaro, G. and Erseghe, T. and Kraniauskas, P. and Laurenti, N.},
     10211  title = {A Unified Framework for the Fractional {Fourier} Transform},
     10212  journal = {IEEE Transactions on Signal Processing},
     10213  year = {1998},
     10214  volume = {46},
     10215  number = {12},
     10216  pages = {3206--3219},
     10217  month = {December}
     10218}
     10219@article{Chen1977,
     10220  author = {Chen, W.-H. and Harrison Smith, C. and Fralick, S.C.},
     10221  title = {A Fast Computational Algorithm for the Discrete Cosine Transform},
     10222  journal = {IEEE Transactions on Communications},
     10223  year = {1977},
     10224  volume = {25},
     10225  number = {9},
     10226  pages = {1004--1009},
     10227  month = {September},
     10228  annote = {key_fft}
     10229}
     10230@article{Beckers1990,
     10231  author = {Beckers, A.L.D. and Smeulders, A.W.M.},
     10232  title = {The Probability of a Random Straight Line in Two and Three Dimensions},
     10233  journal = {Pattern Recognition Letters},
     10234  year = {1990},
     10235  volume = {11},
     10236  pages = {233--240}
     10237}
     10238@article{Aert2002a,
     10239  author = {Aert, S. van and Dekker, A.J. den and Dyck, D. van and Bos, A. van den},
     10240  title = {Optimal experimental design of {STEM} measurement of atom column positions},
     10241  journal = {Ultramicroscopy},
     10242  year = {2002},
     10243  volume = {90},
     10244  pages = {273-289}
     10245}
     10246@article{Mallat1989,
     10247  author = {Mallat, S.G.},
     10248  title = {A Theory for Multiresolution Signal Decomposition: The Wavelet Representation},
     10249  journal = {IEEE Transaction on Pattern Analysis and Machine Intelligence},
     10250  year = {1989},
     10251  volume = {11},
     10252  number = {7},
     10253  pages = {674--693},
     10254  month = {July}
     10255}
     10256@book{Ripley1988,
     10257  author = {Ripley, B.D.},
     10258  title = {Statistical Inference for Spatial Processes},
     10259  year = {1988},
     10260  publisher = {Cambridge University Press}
     10261}
     10262@book{Landau1959,
     10263  author = {Landau, L.D. and Lifshitz, E.M.},
     10264  title = {Theory of Elasticity},
     10265  year = {1959},
     10266  publisher = {Pergamon Press},
     10267  edition = {first}
     10268}
     10269@article{Oudejans2000,
     10270  author = {Oudejans, R.R.D. and Verheijen, R. and Bakker, F.C. and Gerrits, J.C. and Steinbrcker, M. and Beek, P.J.},
     10271  title = {Errors in judging 'offside' in football},
     10272  journal = {Nature},
     10273  year = {2000},
     10274  volume = {404},
     10275  pages = {33}
     10276}
     10277@article{Kubinova2001,
     10278  author = {Kubinova, L. and Janacek, J.},
     10279  title = {Confocal Microscopy and Stereology: Estimating Volume, Number, Surface Area and Length by Virtual Test Probes Applied to Three-Dimensional Images},
     10280  journal = {Microscopy Research and Technique},
     10281  year = {2001},
     10282  volume = {53},
     10283  number = {6},
     10284  pages = {425--435}
     10285}
     10286@article{Duynhoven2003,
     10287  author = {Duynhoven, P.M. van and Kempen, G.M.P. van and Sluis, R. van and Rieger, B. and Weegels, P. and Vliet, L.J. van and Nicolay, K.},
     10288  title = {Quantitative Assessment of Gas Cell Development during the Proofing of Dough by Magnetic Resonance Imaging and Image Analysis},
     10289  journal = {Cereal Chemistry},
     10290  year = {2003},
     10291  volume = {80},
     10292  number = {4},
     10293  pages = {360-369}
     10294}
     10295@misc{DMD,
     10296  author = {Texas Instruments Technology},
     10297  title = {www.dlp.com}
     10298}
     10299@article{Merlin1975,
     10300  author = {Merlin, P.M. and Farber, D.J.},
     10301  title = {A Parallel Mechanism for Detecting Curves in Pictures},
     10302  journal = {IEEE Transactions on Computers},
     10303  year = {1975},
     10304  volume = {24},
     10305  pages = {96--98},
     10306  month = {January}
     10307}
     10308@inproceedings{Meyer1999,
     10309  author = {Meyer, Fernand and Maragos, Petros},
     10310  title = {Multiscale Morphological Segmentations Based on Watershed, Flooding, and Eikonal PDE},
     10311  year = {1999},
     10312  volume = {1682},
     10313  pages = {351--362},
     10314  month = {September},
     10315  editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
     10316  publisher = {Springer-Verlag},
     10317  series = {Lecture Notes on Computer Science},
     10318  address = {Berlin Heidelberg},
     10319  booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)}
     10320}
     10321@article{Borgefors2003,
     10322  author = {Borgefors, G.},
     10323  title = {Weighted Digital Distance Transforms in Four Dimensions},
     10324  journal = {Discrete Applied Mathematics},
     10325  year = {2003},
     10326  volume = {125},
     10327  number = {1},
     10328  pages = {161--176}
     10329}
     10330@incollection{Proesmans1994,
     10331  author = {Proesmans, M. and Pauwels, P. and van Gool, L.},
     10332  title = {Coupled geometry-driven diffusion equations for low-level vision},
     10333  year = {1994},
     10334  pages = {191--228},
     10335  editor = {Ter Haar Romeny B.M.},
     10336  publisher = {Kluwer Academic Publishers},
     10337  chapter = {9},
     10338  booktitle = {Geometry-driven diffusion in computer vision}
     10339}
     10340@article{Smith1997,
     10341  author = {Smith, S.M., Brady J.M.},
     10342  title = {SUSAN - A New Approach to Low Level Image Processing},
     10343  journal = {International Journal of Computer Vision},
     10344  year = {1997},
     10345  volume = {23},
     10346  number = {1},
     10347  pages = {45--78}
     10348}
     10349@article{Catte1992,
     10350  author = {{Catt\'e}, F. and Lions, P. and Morel, J. and Coll, T.},
     10351  title = {Image selective smoothing and edge detection by nonlinear diffusion},
     10352  journal = {SIAM J. Numer. Anal.},
     10353  year = {1992},
     10354  volume = {29},
     10355  number = {1},
     10356  pages = {182--193},
     10357  month = {February}
     10358}
     10359@article{Radon1917,
     10360  author = {Radon, J.},
     10361  title = {{\"Uber} die {B}estimmung von {F}unktionen durch ihre {I}ntegralwerte {l\"angs} gewisser {M}annigfaltigkeiten},
     10362  journal = {Berichte {S\"achsische} Akademie der Wissenschaften, Leipzig, Mathematisch-Physikalische Klasse},
     10363  year = {1917},
     10364  volume = {69},
     10365  pages = {262--277}
     10366}
     10367@techreport{MuntheKaas1995,
     10368  author = {Munthe-Kaas, H. and Haveraaen, M.},
     10369  title = {Coordinate Free Numerics. Part 1: How to Avoid Index Wrestling in Tensor Computations},
     10370  year = {1995},
     10371  institution = {Department of Informatics, University of Bergen, Norway}
     10372}
     10373@inproceedings{Ginkel1999kort,
     10374  author = {Ginkel, M. van and Weijer, J. van de and Verbeek, P.W. and Vliet, L.J. van },
     10375  title = {Curvature Estimation from Orientation Fields },
     10376  year = {1999},
     10377  pages = {545--551 },
     10378  editor = {Ersboll, B.K. and Johansen, P. },
     10379  publisher = {Pattern Recognition Society of Denmark},
     10380  booktitle = {SCIA'99 }
     10381}
     10382@article{Squire1999,
     10383  author = {Squire, A. and Bastiaens, P.I.H.},
     10384  title = {Three Dimensional Image Restoration in Fluorescence Lifetime Imaging Microscopy},
     10385  journal = {Journal of Microscopy},
     10386  year = {1999},
     10387  volume = {193},
     10388  pages = {36--49}
     10389}
     10390@article{Larkin2005,
     10391  author = {Larkin, K.G.},
     10392  title = {Uniform estimation of orientation using local and nonlocal {2-D} energy operators},
     10393  journal = {Optics Express},
     10394  year = {2005},
     10395  volume = {13},
     10396  number = {20},
     10397  pages = {8097-8121}
     10398}
     10399@article{Babaud1986,
     10400  author = {Babaud, J. and Witkin, A.P. and Baudin, M. and Duda, R.O.},
     10401  title = {Uniqueness of the {G}aussian Kernel for Scale-Space Filtering},
     10402  journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
     10403  year = {1986},
     10404  volume = {8},
     10405  number = {1},
     10406  pages = {26--33},
     10407  month = {January}
     10408}
     10409@article{Grossman1984,
     10410  author = {Grossman, A. and Morlet, J.},
     10411  title = {Decomposition of {Hardy} Functions into Square Integrable Wavelets of Constant Shape},
     10412  journal = {{SIAM} Journal on Mathematical Analysis},
     10413  year = {1984},
     10414  volume = {15},
     10415  number = {4},
     10416  pages = {723--736},
     10417  month = {July}
     10418}
     10419@article{OlivoMarin2002,
     10420  author = {Olivo-Marin, J.-C.},
     10421  title = {Extraction of Spots in Biological Images using Multiscale Products},
     10422  journal = {Pattern Recognition},
     10423  year = {2002},
     10424  volume = {35},
     10425  number = {9},
     10426  pages = {1989--1996},
     10427  month = {September}
     10428}
     10429@article{Larkin2001,
     10430  author = {Larkin, K.G. and Bone, D.J. and Oldfield, M.A.},
     10431  title = {Natural Demodulation of Two-Dimensional Fringe Patterns. {I}. General Background of the Spiral Phase Quadrature Transform},
     10432  journal = {Journal of the Optical Society of America A},
     10433  year = {2001},
     10434  volume = {18},
     10435  number = {8},
     10436  pages = {1862--1870},
     10437  month = {August}
     10438}
     10439@article{Nakajima2003,
     10440  author = {Nakajima, Y. and Inomata, H. and Nogawa, H. and Sato, Y. and Tamura, S. and Okazaki, K. and Torii, S.},
     10441  title = {Physics-based flow estimation of fluids},
     10442  journal = {Pattern Recognition},
     10443  year = {2003},
     10444  volume = {36},
     10445  pages = {1203-1212}
     10446}
     10447@article{Garini2005,
     10448  author = {Garini, Y. and Vermolen, B.J. and Young, I.T.},
     10449  title = {From micro to nano: recent advances in high-resolution microscopy},
     10450  journal = {Current Opinion in Biotechnology},
     10451  year = {2005},
     10452  volume = {16},
     10453  number = {1},
     10454  pages = {3-12}
     10455}
     10456@article{Duhamel1990,
     10457  author = {Duhamel. P. and Vetterli, M.},
     10458  title = {Fast {F}ourier transforms: a tutorial review and a state of the art},
     10459  journal = {Signal Processing},
     10460  year = {1990},
     10461  volume = {19},
     10462  pages = {259--299},
     10463  annote = {key_fft}
     10464}
     10465@article{Martinez2004,
     10466  author = {Martinez, G. and Tsuno, K.},
     10467  title = {Design of {Wien} filters with high resolution},
     10468  journal = {Ultramicroscopy},
     10469  year = {2004},
     10470  volume = {100},
     10471  pages = {105-114}
     10472}
     10473@inproceedings{Tanaka1986,
     10474  author = {Tanaka, A. and Kameyama, M. and Kazama, S. and Watanabe, O.},
     10475  title = {A Rotation Method for Raster Image Using Skew Transformation},
     10476  year = {1986},
     10477  pages = {272--277},
     10478  booktitle = {CVPR'86, IEEE Conference on Computer Vision and Pattern Recognition}
     10479}
     10480@article{Nyquist1928,
     10481  author = {Nyquist, H.},
     10482  title = {Certain Topics in Telegraph Transmission Theory},
     10483  journal = {Transactions of the AIEE},
     10484  year = {1928},
     10485  pages = {617--644},
     10486  note = {[reprinted in: Proceedings of the IEEE, vol. 90, no. 2, pp. 280-305, February 2002]}
     10487}
     10488@article{Thurnhofer1996,
     10489  author = {Thurnhofer, S. and Mitra, S.K.},
     10490  title = {A General Framework for Quadratic {V}olterra Filter for Edge Enhancement},
     10491  journal = {IEEE Transactions on Image Processing},
     10492  year = {1996},
     10493  volume = {5},
     10494  number = {6},
     10495  pages = {950--963},
     10496  month = {June}
     10497}
     10498@article{Kybic2002,
     10499  author = {Kybic, J. and Blu, T. and Unser, M.},
     10500  title = {Generalized sampling: A variational approach - Part I: Theory},
     10501  journal = {IEEE Transactions on Signal Processing},
     10502  year = {2002},
     10503  volume = {50},
     10504  number = {8},
     10505  pages = {1965--1976}
     10506}
     10507@article{Maybank1986,
     10508  author = {Maybank, S.J.},
     10509  title = {Optical Flow and the Taylor Expansion},
     10510  journal = {Pattern Recognition Letters},
     10511  year = {1986},
     10512  volume = {4},
     10513  pages = {243-246}
     10514}
     10515@inproceedings{Breen1996,
     10516  author = {Breen, E. J. and Jones, R.},
     10517  title = {An Attribute-Based Approach to Mathematical Morphology},
     10518  year = {1996},
     10519  pages = {41-48},
     10520  editor = {Maragos, P. and Schafer, R. W. and Akmal Butt, M.},
     10521  publisher = {Kluwer Academic Publishers},
     10522  address = {Boston},
     10523  booktitle = {Mathematical Morphology and its Applications to Image and Signal Processing}
     10524}
     10525@inproceedings{Ronse1986,
     10526  author = {Ronse, C.},
     10527  title = {Erosion of Narrow Image Features by Combination of Local Low Rank and Max Filters},
     10528  year = {1986},
     10529  pages = {77-81},
     10530  address = {London},
     10531  booktitle = {Proceedings of the Second IEE International Conference on Image Processing and its Applications}
     10532}
     10533@article{Khaneja1998,
     10534  author = {Khaneja, N. and Miller, M. I. and Grenander, U.},
     10535  title = {Dynamic Programming Generation of Curves on Brain Surfaces},
     10536  journal = {IEEE Transaction on Pattern Analysis and Machine Intelligence},
     10537  year = {1998},
     10538  volume = {20},
     10539  number = {11},
     10540  pages = {1260--1265}
     10541}
     10542@article{Nogales2001,
     10543  author = {Nogales, E. and Grigorieff, N.},
     10544  title = {Molecular Machines: Putting the Pieces Together},
     10545  journal = {Journal of Cell Biology},
     10546  year = {2--1},
     10547  volume = {152},
     10548  pages = {F1-F10}
     10549}
     10550@article{Campbell2001,
     10551  author = {Campbell, D.J. and Freidinger, E.R. and Querns, M.K.},
     10552  title = {Spontaneous Assembly of Magnetic {LEGO} Bricks},
     10553  journal = {The Chemical Educator},
     10554  year = {2001},
     10555  volume = {6},
     10556  number = {6},
     10557  pages = {321--323}
     10558}
     10559@article{Pike1995,
     10560  author = {Pike, R. and Presotto, D. and Dorward, S. and Flandrena, B. and Thompson, K. and Trickey, H. and Winterbottom, P.},
     10561  title = {Plan 9 from {Bell} Labs},
     10562  journal = {Computing Systems},
     10563  year = {1995},
     10564  volume = {8},
     10565  number = {3},
     10566  pages = {221--254}
     10567}
     10568@article{Jiang2003,
     10569  author = {Jiang, W. and Baker, M.L. and Wu, Q. and Bajaj, C. and Chiu, W.},
     10570  title = {Applications of a bilateral denoising filter in biological electron microscopy},
     10571  journal = {Journal of Structural Biology},
     10572  year = {2003},
     10573  volume = {144},
     10574  pages = {114-122}
     10575}
     10576@misc{Koenderink1988,
     10577  author = {Koenderink, J.J.},
     10578  title = {Image Structure},
     10579  year = {1988},
     10580  howpublished = {NATO ASI Series, vol. F39, Mathematics and Computer Science in Medical Imaging, Springer-Verlag}
     10581}
     10582@article{Back1997,
     10583  author = {Back, A. D. and Weigend, A. S.},
     10584  title = {A first application of independent component analysis to extracting structure from stock returns},
     10585  journal = {International Journal of Neural Systems},
     10586  year = {1997},
     10587  volume = {8},
     10588  number = {4},
     10589  pages = {473-484},
     10590  month = {Aug}
     10591}
     10592@article{Koenderink1984,
     10593  author = {Koenderink, J.J.},
     10594  title = {The Structure of Images},
     10595  journal = {Biological Cybernetics},
     10596  year = {1984},
     10597  volume = {50},
     10598  pages = {363--370}
     10599}
     10600@article{Koenderink1987,
     10601  author = {Koenderink, J.J. and Doorn, A.J. van},
     10602  title = {Representation of Local Geometry in the Visual System},
     10603  journal = {Biological Cybernetics},
     10604  year = {1987},
     10605  volume = {55},
     10606  pages = {367--375}
     10607}
     10608@article{Jarvis1976,
     10609  author = {Jarvis, J.F. and Roberts, C.S.},
     10610  title = {A New Technique for Displaying Continuous Tone Images on a Bilevel Display},
     10611  journal = {IEEE Transactions on Communications},
     10612  year = {1976},
     10613  pages = {891--898},
     10614  month = {August}
     10615}
     10616@article{Saito1994,
     10617  author = {Saito,T. and Toriwaki, J.},
     10618  title = {New algorithms for euclidean distance transformation of an n-dimensional digitized picture with applications},
     10619  journal = {Pattern Recognition},
     10620  year = {1994},
     10621  volume = {27},
     10622  number = {11},
     10623  pages = {1551-1565}
     10624}
     10625@article{Bonneau2005,
     10626  author = {Bonneau, S. and Dahan, M. and Cohnen, L.D.},
     10627  title = {Single Quantum Dot Tracking Based on Perceptual Grouping Using Minimal Paths in a Spatiotemporal Volume},
     10628  journal = {IEEE Transactions on Image Processing},
     10629  year = {2005},
     10630  volume = {14},
     10631  number = {9},
     10632  pages = {1384-1395}
     10633}
     10634@inproceedings{Boomgaard2002a,
     10635  author = {Boomgaard, R. van den and Weijer, J. van de},
     10636  title = {Robust Estimation of Orientation for Texture Analysis},
     10637  year = {2002},
     10638  pages = {135-138},
     10639  month = {1 June},
     10640  address = {Copenhagen, Denmark},
     10641  booktitle = {Texture 2002, The 2nd international workshop on texture analysis and synthesis}
     10642}
     10643@article{Koenderink1988a,
     10644  author = {Koenderink, J.J. and Richards, W.},
     10645  title = {Two-dimensional Curvature Operators},
     10646  journal = {Journal of the Optical Society of America A},
     10647  year = {1988},
     10648  volume = {5},
     10649  number = {7},
     10650  pages = {1136--1141},
     10651  month = {July}
     10652}
     10653@article{Neher2004,
     10654  author = {Neher, R.A. and Neher, E.},
     10655  title = {Applying Spectral Fingerprinting to the Analysis of {FRET} Images},
     10656  journal = {Microscopy Research and Technique},
     10657  year = {2004},
     10658  volume = {64},
     10659  pages = {185-195}
     10660}
     10661@article{Wouters2001,
     10662  author = {Wouters, F.S. and Verveer, P.J. and Bastiaens, P.I.H.},
     10663  title = {Imaging biochemistry inside cells},
     10664  journal = {Trends in Cell Biology},
     10665  year = {2001},
     10666  volume = {11},
     10667  pages = {203-211}
     10668}
     10669@article{Einstein1905,
     10670  author = {Einstein, A.},
     10671  title = {{\"Uber} die von der molekularkinetischen {T}heorie der {W\"a}rme geforderte {B}ewegung von in ruhenden {Fl\"u}ssigkeiten suspendierten {T}eilchen},
     10672  journal = {Annalen der Physik},
     10673  year = {1905},
     10674  volume = {17},
     10675  pages = {549--560}
     10676}
     10677@article{Wimberly2000,
     10678  author = {Wimberly, B.T. and Brodersen, D.E. and Clemons, W.M. Jr. and Morgan-Warren, R.J. and Carter, A.P. and Vonrhein, C. and Hartsch, T. and Ramakrishnan, V.},
     10679  title = {Structure of the {30S} ribosomal subunit},
     10680  journal = {Nature},
     10681  year = {2005},
     10682  volume = {407},
     10683  pages = {327-339}
     10684}
     10685@article{Weickert1998,
     10686  author = {Weickert, J. and ter Haar Romeny, B.M. and Viergever, M.A. },
     10687  title = {Efficient and reliable schemes for nonlinear diffusion filtering},
     10688  journal = {IEEE Transactions on Image Processing},
     10689  year = {1998},
     10690  volume = {7},
     10691  number = {3},
     10692  pages = {398--410}
     10693}
     10694@article{Lindeberg1990,
     10695  author = {Lindeberg, T.},
     10696  title = {Scale-Space for Discrete Signals},
     10697  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     10698  year = {1990},
     10699  volume = {12},
     10700  number = {3},
     10701  pages = {234--254}
     10702}
     10703@article{Nason2000,
     10704  author = {Nason, G.P. and Sachs, R. von and Kroisandt, G.},
     10705  title = {Wavelet Processes and Adaptive Estimation of the Evolutionary Wavelet Spectrum},
     10706  journal = {Journal of the Royal Statistical Society B},
     10707  year = {2000},
     10708  volume = {62},
     10709  pages = {271--292}
     10710}
     10711@article{Gibbons1975,
     10712  author = {Gibbons, P.C. and Ritsko, J.J. and Schnatterly, S.E.},
     10713  title = {Inelastic electron scattering spectrometer},
     10714  journal = {Review of Scientific Intstruments},
     10715  year = {1975},
     10716  volume = {46},
     10717  number = {11},
     10718  pages = {1546-1554}
     10719}
     10720@article{Bouma2005,
     10721  author = {Bouma, H. and Vilanova, A. and Vliet, L.J. van and Gerritsen, F.A.},
     10722  title = {Correction for the Dislocation of Curved Surfaces Caused by the {PSF} in {2D} and {3D} {CT} Images},
     10723  journal = {Ultramicroscopy},
     10724  year = {2005},
     10725  volume = {27},
     10726  number = {9},
     10727  pages = {1501-1507}
     10728}
     10729@book{Lindeberg1994,
     10730  author = {Lindeberg, T.},
     10731  title = {Scale-Space Theory in Computer Vision},
     10732  year = {1994},
     10733  publisher = {Kluwer}
     10734}
     10735@article{Ober2003,
     10736  author = {Ober, R.J. and Lin, Z. and Zou, Q.},
     10737  title = {Calculations of the Fisher information matrix for multidimensional data sets},
     10738  journal = {IEEE Transactions on Signal Processing},
     10739  year = {2003},
     10740  volume = {51},
     10741  number = {10},
     10742  pages = {2679-2691}
     10743}
     10744@article{Mattfeldt2000,
     10745  author = {Mattfeldt, T. and Gottfried, H.-W. and Schmidt, V. and Kestler, H.A.},
     10746  title = {Classification of Spatial Textures in Benign and Cancerous Glandular Tissues by Stereology and Stochastic Geometry using Artificial Neural Networks},
     10747  journal = {Journal of Microscopy},
     10748  year = {2000},
     10749  volume = {198, Pt 2},
     10750  pages = {143--158},
     10751  month = {May}
     10752}
     10753@article{Ober2004,
     10754  author = {Ober, R.J. and Ram, S. and Ward, S.E.},
     10755  title = {Localization Accuracy in Single-Molecule Microscopy},
     10756  journal = {Biophysical Journal},
     10757  year = {2004},
     10758  volume = {86},
     10759  number = {2},
     10760  pages = {1185-1200}
     10761}
     10762@article{Hummel1987,
     10763  author = {Hummel, R.A. and Kimia, B. and Zucker, S.W.},
     10764  title = {Deblurring Gaussian Blur},
     10765  journal = {Computer Vision, Graphics, and Image Processing},
     10766  year = {1987},
     10767  volume = {38},
     10768  pages = {66--80}
     10769}
     10770@article{Hummel1989,
     10771  author = {Hummel, R. and Moniot, R.},
     10772  title = {Reconstructions from Zero Crossings in Scale Space},
     10773  journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
     10774  year = {1989},
     10775  volume = {37},
     10776  number = {12},
     10777  pages = {2111--2130},
     10778  month = {December}
     10779}
     10780@article{Pons1999,
     10781  author = {Pons, M.N. and Vivier, H. and Belaroui, K. and Bernard-Michel, B. and Cordier, F. and Oulahana, D. and Dodds, J.A. },
     10782  title = {Particle morphology: from cisulatisation to measurement},
     10783  journal = {Powder Technology},
     10784  year = {1999},
     10785  volume = {103},
     10786  pages = {44--57}
     10787}
     10788@inproceedings{Holmes1999,
     10789  author = {Holmes, A. and Taylor, C.},
     10790  title = {Developing a Measure of Similarity between Pixel Signatures},
     10791  year = {1999},
     10792  volume = {2},
     10793  pages = {614--623},
     10794  editor = {Pridmore, T. and Elliman, D.},
     10795  booktitle = {10th British Machine Vision Conference}
     10796}
     10797@article{Keys1981,
     10798  author = {Keys, R. G.},
     10799  title = {Cubic Convolution Interpolation for Digital Image Processing},
     10800  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
     10801  year = {1981},
     10802  volume = {29},
     10803  number = {6},
     10804  pages = {1153-1160}
     10805}
     10806@inproceedings{Hummel1986,
     10807  author = {Hummel, R.A.},
     10808  title = {Representation Based on Zero-crossings in Scale-Space},
     10809  year = {1986},
     10810  pages = {204--209},
     10811  booktitle = {IEEE Proceedings of the International Conference on Computer Vision and Pattern Recognition}
     10812}
     10813@article{Nielsen1997,
     10814  author = {Nielsen, N. and Florack, L. and Deriche, R.},
     10815  title = {Regularization, scale-space and edge-detection filters},
     10816  journal = {Journal of Mathematical Imaging and Vision},
     10817  year = {1997},
     10818  volume = {7},
     10819  number = {4},
     10820  pages = {291--307}
     10821}
     10822@inbook{Adam1968,
     10823  author = {Adam, G. and {Delbr\"uck}, M.},
     10824  title = {Structural Chemistry and Molecular Biology},
     10825  year = {1968},
     10826  pages = {198-215},
     10827  editor = {Rich, A. and Davidson, N. },
     10828  publisher = {Freeman},
     10829  address = {San Francisco, USA},
     10830  chapter = {Reduction of Dimensionality in Biological Diffusion Processes}
     10831}
     10832@article{Frontali1979,
     10833  author = {Frontali, C. and Dore, E. and Ferrauto, A. and Gratton, E. and Bettini, A. and Pozzan, M.R. and Valdevit, E.},
     10834  title = {An absolute method for the determination of the persistence length of native {DNA} from electron micrographs},
     10835  journal = {Biopolymers},
     10836  year = {1979},
     10837  volume = {18},
     10838  number = {6},
     10839  pages = {1353-1373}
     10840}
     10841@inbook{Thomas1963,
     10842  author = {Thomas, L.H.},
     10843  title = {Applications of Digital Computers},
     10844  year = {1963},
     10845  publisher = {Ginn and Co., Boston},
     10846  chapter = {Using Computers to Solve Problems in Physics}
     10847}
     10848@article{Yang2005,
     10849  author = {Yang, C. and Ng, E.G. and Penczek, P.A.},
     10850  title = {Unified {3-D} structure and projection orientation refinement using {quasi-Newton} algorithm},
     10851  journal = {Journal of Structural Biology},
     10852  year = {2005},
     10853  volume = {149},
     10854  pages = {53-64}
     10855}
     10856@article{Almeida1997,
     10857  author = {Almeida, M.P.},
     10858  title = {Anisotropic Textures with Arbitrary Orientation},
     10859  journal = {Journal of Mathematical Imaging and Vision},
     10860  year = {1997},
     10861  volume = {7},
     10862  pages = {241--251}
     10863}
     10864@mastersthesis{Okker2003,
     10865  author = {Okker, B.H.},
     10866  title = {Contour continuation using space variant mathematical morphology},
     10867  year = {2003},
     10868  month = {January},
     10869  school = {Delft University of Technology}
     10870}
     10871@article{Kempen2000a,
     10872  author = {Kempen, G.M.P. van and Vliet, L.J. van},
     10873  title = {Mean and Variance of Ratio Estimators Used in Fluorescence Ratio Imaging},
     10874  journal = {Cytometry},
     10875  year = {2000},
     10876  volume = {39},
     10877  number = {4},
     10878  pages = {300-305}
     10879}
     10880@article{Almeida1994,
     10881  author = {Almeida, L.B.},
     10882  title = {The Fractional {F}ourier Transform and Time-Frequency Representations},
     10883  journal = {IEEE Transactions on Signal Processing},
     10884  year = {1994},
     10885  volume = {42},
     10886  number = {11},
     10887  pages = {3084--3091},
     10888  month = {November}
     10889}
     10890@article{Malandain1998,
     10891  author = {Malandain, G. and {Fern\'andez-Vidal}, S.},
     10892  title = {Euclidean Skeletons},
     10893  journal = {Image and Vision Computing},
     10894  year = {1998},
     10895  volume = {16},
     10896  number = {5},
     10897  pages = {317--327}
     10898}
     10899@article{Hekrdla1986,
     10900  author = {Hekrdla, J.},
     10901  title = {Index Transforms of Multidimensional Cyclic Convolutions and Discrete {Fourier} Transforms},
     10902  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
     10903  year = {1986},
     10904  volume = {34},
     10905  number = {4},
     10906  pages = {996--996},
     10907  month = {August},
     10908  annote = {key_fft}
     10909}
     10910@article{Kues2001,
     10911  author = {Kues, T. and Peters, R. and Kubitscheck, U.},
     10912  title = {Visualization and Tracking of Single Protein Molecules in the Cell Nucleus},
     10913  journal = {Biophysical Journal},
     10914  year = {2001},
     10915  volume = {80},
     10916  number = {6},
     10917  pages = {2954-2967}
     10918}
     10919@article{Heilemann2002,
     10920  author = {Heilemann, M. and Herten, D.P. and Heintzmann, R. and Cremer, C. and {M\"uller}, C. and Tinnefeld, P. and Weston, K.D. and Wolfrum, J. and Sauer, M.},
     10921  title = {High-resolution colocalization of single dye molecules by fluorescence lifetime imaging microscopy},
     10922  journal = {Analytical Chemistry},
     10923  year = {2002},
     10924  volume = {74},
     10925  number = {14},
     10926  pages = {3511-3517}
     10927}
     10928@article{Kehtarnavaz1988,
     10929  author = {Kehtarnavaz, N. and Figueiredo, R.J.P. de},
     10930  title = {A 3-D contour segmentation scheme based on curvature and torsion},
     10931  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     10932  year = {1988},
     10933  volume = {10},
     10934  number = {5},
     10935  pages = {707--713},
     10936  month = {September}
     10937}
     10938@article{Gil1993,
     10939  author = {Gil, J. and Werman, M.},
     10940  title = {Computing {2-D} Min, Median, and Max Filters},
     10941  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     10942  year = {1993},
     10943  volume = {15},
     10944  number = {5},
     10945  pages = {504--507},
     10946  month = {May}
     10947}
     10948@article{Engel1981,
     10949  author = {Engel, J. and Odermatt, E. and Engel, A. and Madri, J.A. and Furthmayr, H. and Timpl, H.R.},
     10950  title = {Shapes, domain organizations and flexibility of laminin and fibronectin, two multifunctional proteins of the extracellular matrix},
     10951  journal = {Journal of Molecular Biology},
     10952  year = {1981},
     10953  volume = {150},
     10954  number = {1},
     10955  pages = {97-120}
     10956}
     10957@article{Ruiz2001,
     10958  author = {Ruiz, T. and {Koppenschl\"ager}, G. and Radermacher, M.},
     10959  title = {The first three-dimensional structure of phosphofructokinase from Saccharomyces cerevisiae determined by electron microscopy of single particles},
     10960  journal = {Journal of Structural Biology},
     10961  year = {2001},
     10962  volume = {136},
     10963  pages = {167-180}
     10964}
     10965@techreport{Nordberg1992a,
     10966  author = {Nordberg, K.},
     10967  title = {Signal Representation and Signal Processing using Operators},
     10968  year = {1992},
     10969  address = {{Link\"oping}, Sweden},
     10970  institution = {{Link\"oping} University},
     10971  note = {LiTH-ISY-I-1387}
     10972}
     10973@article{Faydi2001,
     10974  author = {Faydi, E. and Andrieu, J. and Laurent, P.},
     10975  title = {Experimental Study and Modeling of the Ice Crystal Morphology of Model Standard Ice Cream. Part {I}: Direct Characterization Method and Experimental Data},
     10976  journal = {Journal of Food Engineering},
     10977  year = {2001},
     10978  volume = {48},
     10979  pages = {283--291}
     10980}
     10981@article{Griffin1997,
     10982  author = {Griffin, L.D.},
     10983  title = {Scale-Imprecision Space},
     10984  journal = {Image and Vision Computing},
     10985  year = {1997},
     10986  volume = {15},
     10987  number = {5},
     10988  pages = {369--398}
     10989}
     10990@phdthesis{Cavallo2002,
     10991  author = {Cavallo, A.},
     10992  title = {Four Dimensional Particle Tracking in Biological Dynamic Processes},
     10993  year = {2002},
     10994  month = {June},
     10995  address = {Heidelberg, Germany},
     10996  school = {Ruprechts-Karls-{Universit\"at}}
     10997}
     10998@phdthesis{Leeuw1997,
     10999  author = {Leeuw, W. de},
     11000  title = {Presentation and Exploration of Flow Data},
     11001  year = {1997},
     11002  address = {The Netherlands},
     11003  school = {Delft University of Technology}
     11004}
     11005@article{Unser1993a,
     11006  author = {Unser, Michael and Aldroubi, Akram and Eden, Murray},
     11007  title = {{B}-Spline Signal Processing: Part {II} - Efficient Design and Applications},
     11008  journal = {IEEE Transactions on Signal Processing},
     11009  year = {1993},
     11010  volume = {41},
     11011  number = {2},
     11012  pages = {834--848},
     11013  month = {February}
     11014}
     11015@article{Deschamps2001,
     11016  author = {Deschamps, T. and Cohen, L.D.},
     11017  title = {Fast extraction of minimal paths in 3D images and applications to virtual endoscopy},
     11018  journal = {Medical Image Analysis},
     11019  year = {2001},
     11020  volume = {5},
     11021  number = {4},
     11022  pages = {281-299}
     11023}
     11024@article{Torok1998,
     11025  author = {{T\"or\"ok}, P. and Higdon, P.D. and Wilson, T.},
     11026  title = {On the general properties of polarised light conventional and confocal microscopes},
     11027  journal = {Optics Communications},
     11028  year = {1998},
     11029  volume = {148},
     11030  number = {4-6},
     11031  pages = {300-315}
     11032}
     11033@article{Rose2004,
     11034  author = {Rose, H.},
     11035  title = {Outline of an ultracorrector compensating for all primary chromatic and geometrical aberrations of charged-particle lenses},
     11036  journal = {Nuclear Instruments and Methods in Physics Research A},
     11037  year = {2004},
     11038  volume = {519},
     11039  pages = {12-27}
     11040}
     11041@article{Jain1979,
     11042  author = {Jain, A.K.},
     11043  title = {A Sinusoidal Family of Unitary Transforms},
     11044  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11045  year = {1979},
     11046  volume = {1},
     11047  number = {4},
     11048  pages = {356--365},
     11049  month = {October},
     11050  annote = {key_fft}
     11051}
     11052@article{Weickert1999a,
     11053  author = {Weickert, J. and Ishikawa, S. and Imiya, A.},
     11054  title = {Linear scale-space has first been proposed in {Japan}},
     11055  journal = {Journal of Mathematical Imaging and Vision},
     11056  year = {1999},
     11057  volume = {10},
     11058  number = {3},
     11059  pages = {237--252}
     11060}
     11061@article{Doel1998,
     11062  author = {Doel, L.R. van den and Vliet, L.J. van},
     11063  title = {Quantitative evaluation of light microscopes based on image processing techniques},
     11064  journal = {Bioimaging},
     11065  year = {1998},
     11066  volume = {6},
     11067  number = {3},
     11068  pages = {138-149}
     11069}
     11070@article{Mallat1992,
     11071  author = {Mallat, S.G. and Zhong, S.},
     11072  title = {Characterization of Signals from Multiscale Edges},
     11073  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11074  year = {1992},
     11075  volume = {14},
     11076  number = {7},
     11077  pages = {710--732},
     11078  month = {June}
     11079}
     11080@inproceedings{Bulow1997,
     11081  author = {{B\"ulow}, T. and Sommer, G.},
     11082  title = {Algebraically Extended Representations of Multi-Dimensional Signals},
     11083  year = {1997},
     11084  volume = {I},
     11085  pages = {559--566},
     11086  month = {June 9-11},
     11087  booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)}
     11088}
     11089@article{Bailey1990,
     11090  author = {Bailey, D.H.},
     11091  title = {{FFT}s in External or Hierarchical Memory},
     11092  journal = {The Journal of Supercomputing},
     11093  year = {1990},
     11094  volume = {4},
     11095  pages = {23--35},
     11096  annote = {key_fft}
     11097}
     11098@article{Boddeke1997,
     11099  author = {Boddeke, F.R. and Vliet, L.J. van and Young, I.T.},
     11100  title = {Calibration of the automated z-axis of a microscope using focus functions},
     11101  journal = {Journal of Microscopy},
     11102  year = {1997},
     11103  volume = {186},
     11104  number = {3},
     11105  pages = {270-274}
     11106}
     11107@inproceedings{Bulow1998,
     11108  author = {{B\"ulow}, T. and Sommer, G.},
     11109  title = {Quaternionic {G}abor Filters for Local Structure Classification},
     11110  pages = {808--810},
     11111  month = {August 17--20},
     11112  booktitle = {14th International Conference on Pattern Recognition (Brisbane, Australia)}
     11113}
     11114@article{Boddeke1994,
     11115  author = {Boddeke, F.R. and Vliet, L.J. van and Netten, H. and Young, I.T.},
     11116  title = {Autofocusing in microscopy based on the {OTF} and sampling},
     11117  journal = {Bioimaging},
     11118  year = {1994},
     11119  volume = {2},
     11120  number = {4},
     11121  pages = {193-203}
     11122}
     11123@inproceedings{Breton1996,
     11124  author = {Breton, P. and Zucker, S.W.},
     11125  title = {Shadows and Shading Flow Fields},
     11126  year = {1996},
     11127  pages = {782--789},
     11128  address = {San Francisco, USA},
     11129  booktitle = {Proc. IEEE Conference on Computer Vision and Pattern Recognition - CVPR'96}
     11130}
     11131@article{Nikolaidis1998,
     11132  author = {Nikolaidis, N. and Pitas, I.},
     11133  title = {Nonlinear Processing and Analysis of Angular Signals},
     11134  journal = {IEEE Transactions on Signal Processing},
     11135  year = {1998},
     11136  volume = {46},
     11137  number = {12},
     11138  pages = {3181--3194},
     11139  month = {December}
     11140}
     11141@article{Monga1992,
     11142  author = {Monga, O. and Ayache,N. and Sander,P.T.},
     11143  title = {From voxel to intrinsic surface features},
     11144  journal = {Image and Vision Computing},
     11145  year = {1992},
     11146  volume = {10},
     11147  number = {6},
     11148  pages = {403--417}
     11149}
     11150@article{Monga1995,
     11151  author = {Monga, O. and Benayoun, S.},
     11152  title = {Using Partial Derivatives of 3D Images to Extract Typical Surface Features},
     11153  journal = {Computer Vision and Image Understanding},
     11154  year = {1995},
     11155  volume = {61},
     11156  number = {2},
     11157  pages = {171--189}
     11158}
     11159@article{Efros1997,
     11160  author = {Efros, A.L. and Rosen, M.},
     11161  title = {Random Telegraph Signal in the Photoluminescence Intensity of a Single Quantum Dot},
     11162  journal = {Physical Review Letters},
     11163  year = {1997},
     11164  volume = {78},
     11165  number = {6},
     11166  pages = {1110-1113}
     11167}
     11168@article{Illingworth1988,
     11169  author = {Illingworth, J. and Kittler, J.},
     11170  title = {A Survey of the {H}ough Transform},
     11171  journal = {Computer Vision, Graphics and Image Processing},
     11172  year = {1988},
     11173  volume = {44},
     11174  number = {1},
     11175  pages = {87--116},
     11176  annote = {key_radon}
     11177}
     11178@inproceedings{Dorst1993,
     11179  author = {Dorst, L. and Boomgaard, R. van den},
     11180  title = {An Analytical Theory of Mathematical Morphology},
     11181  year = {1993},
     11182  pages = {245--250},
     11183  editor = {Serra, J. and Salembier, P.},
     11184  booktitle = {Mathematical Morphology and its Applications to Signal Processing},
     11185  organization = {Universitat Politecnica de Catalunya (Barcelona, Spain)}
     11186}
     11187@article{Zwier2004,
     11188  author = {Zwier, J.M. and Rooij, G.J. van and Hofstraat, J.W. and Brakenhoff, G.J.},
     11189  title = {Image calibration in fluorescence microscopy},
     11190  journal = {Journal of Microscopy},
     11191  year = {2004},
     11192  volume = {216},
     11193  number = {1},
     11194  pages = {15-24}
     11195}
     11196@article{Heun2001,
     11197  author = {Heun, P. and Laroche, T. and Shimada, K. and Furrer, P. and Gasser, S.M.},
     11198  title = {Chromoson Dynamics in the Yeast Interphase Nucleus},
     11199  journal = {Science},
     11200  year = {2001},
     11201  volume = {294},
     11202  number = {5549},
     11203  pages = {2181-2187},
     11204  month = {December}
     11205}
     11206@inbook{Dorst1995,
     11207  author = {Dorst, L. and Boomgaard, R. van den},
     11208  title = {World Scientific},
     11209  year = {1995},
     11210  pages = {13--22},
     11211  editor = {Dori, D. and Bruckstein, A.},
     11212  chapter = {Orientation-based Representations for Mathematical Morphology}
     11213}
     11214@misc{Dorst1999,
     11215  author = {Dorst, L. and Mann, S. and Bouma, T.},
     11216  title = {{GABLE}: A Matlab Tutorial for Geometric Algebra},
     11217  year = {1999},
     11218  month = {December}
     11219}
     11220@article{Dorst1994,
     11221  author = {Dorst, L. and Boomgaard, R. van den},
     11222  title = {Morphological Signal Processing and the Slope Transform},
     11223  journal = {Signal Processing},
     11224  year = {1994},
     11225  volume = {38},
     11226  pages = {79--98}
     11227}
     11228@article{Lichte1996a,
     11229  author = {Lichte, H. and Geiger, D. and Harscher, A. and Heindl, E. and Lehman, M. and Malamidis, D. and Orchowski, A. and Rau, W.-D.},
     11230  title = {Artefacts in electron holography},
     11231  journal = {Ultramicroscopy},
     11232  year = {1996},
     11233  volume = {64},
     11234  pages = {67-77}
     11235}
     11236@article{Thust1996,
     11237  author = {Thust, A. and Overwijk, M.H.F. and Coene, W.M.J. and Lentzen, M.},
     11238  title = {Numerical correction of lens aberrations in phase-retrieval {HRTEM}},
     11239  journal = {Ultramicroscopy},
     11240  year = {1996},
     11241  volume = {64},
     11242  pages = {249-264}
     11243}
     11244@article{Katsevich1997,
     11245  author = {Katsevich, A.I.},
     11246  title = {Local Tomography for the Generalized Radon Transform},
     11247  journal = {SIAM J. Appl. Math.},
     11248  year = {1997},
     11249  volume = {57},
     11250  number = {4},
     11251  pages = {1128--1162},
     11252  month = {August},
     11253  annote = {key_radon}
     11254}
     11255@article{Lopez1999,
     11256  author = {{L\'opez}, A.M. and Lumbreras, F. and Serrat, J. and Villanueva, J.J.},
     11257  title = {Evaluation of Methods for Ridge and Valley Detection},
     11258  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11259  year = {1999},
     11260  volume = {21},
     11261  number = {4},
     11262  pages = {327--335},
     11263  month = {April}
     11264}
     11265@article{Beil1994,
     11266  author = {Beil, W.},
     11267  title = {Steerable Filters and Invariance Theory},
     11268  journal = {Pattern Recognition Letters},
     11269  year = {1994},
     11270  volume = {15},
     11271  pages = {453--460}
     11272}
     11273@book{Stauffer1985,
     11274  author = {Stauffer, D. and Aharony, A.},
     11275  title = {Introduction to Percolation Theory},
     11276  year = {1985, 1994},
     11277  publisher = {Taylor \& Francis},
     11278  edition = {second}
     11279}
     11280@inproceedings{Simoncelli1996a,
     11281  author = {Simoncelli, E.P. and Adelson, E.H.},
     11282  title = {Noise Removal via Bayesian Wavelet Coring},
     11283  year = {1996},
     11284  pages = {379--382},
     11285  booktitle = {3rd IEEE International Conference on Image Processing (Lausanne, Switzerland)}
     11286}
     11287@article{Shafarenko1997,
     11288  author = {Shafarenko, Leila and Petrou, Maria and Kittler, Josef},
     11289  title = {Automatic Watershed Segmentation of Randomly Textured Color Images},
     11290  journal = {IEEE Transactions on Image Processing},
     11291  year = {1997},
     11292  volume = {6},
     11293  number = {11},
     11294  pages = {1530--1544},
     11295  month = {November}
     11296}
     11297@article{Duhamel1988,
     11298  author = {Duhamel, P. and Piron, B. and Etcheto, J.M.},
     11299  title = {On Computing the Inverse DFT},
     11300  journal = {IEEE Transactions on Acoustics, Speech and Signal Processing},
     11301  year = {1988},
     11302  volume = {36},
     11303  number = {2},
     11304  pages = {285--286},
     11305  month = {February},
     11306  annote = {key_fft}
     11307}
     11308@article{Moser2006,
     11309  author = {Moser, C. and Mayr, T. and Klimant, I.},
     11310  title = {Filter cubes with built-in ultrabright light-emitting diodes as exchangeable excitation light sources in fluorescence microscopy},
     11311  journal = {Journal of Microscopy},
     11312  year = {2006},
     11313  volume = {222},
     11314  pages = {135-140}
     11315}
     11316@article{Morrone1988,
     11317  author = {Morrone, M.C. and Burr, D.C.},
     11318  title = {Feature Detection in Human Vision: a Phase-Dependent Energy Model},
     11319  journal = {Proc. Roc. Soc. Lond. B},
     11320  year = {1988},
     11321  volume = {235},
     11322  pages = {221--245}
     11323}
     11324@article{Giordano2002,
     11325  author = {Giordano, L. and Jovin, T.M. and Irie, M. and Jare-Erijman, E.A.},
     11326  title = {Diheteroarylethenes as Thermally Stable Photoswitchable Acceptors in Photochromic Fluorescence Resonance Energy Transfer ({pcFRET})},
     11327  journal = {Journal of the American Chemical Society},
     11328  year = {2002},
     11329  volume = {124},
     11330  pages = {7481-7489}
     11331}
     11332@article{Iddir2005,
     11333  author = {Iddir, H. and Disko, M.M. and Ogut, S. and Browning, N.D.},
     11334  title = {Atomic scale characterization of the Pt/TiO$_2$ interface},
     11335  journal = {Micron},
     11336  year = {2005},
     11337  volume = {36},
     11338  pages = {233-241}
     11339}
     11340@article{Bleau1992a,
     11341  author = {Bleau, A. and Guise, J. de and LeBlanc, A.-R.},
     11342  title = {A New Set of Fast Algorithms for Mathematical Morphology, {II}. Identification of Topographic Features on Grayscale Images},
     11343  journal = {CVGIP: Image Understanding},
     11344  year = {1992},
     11345  volume = {56},
     11346  number = {2},
     11347  pages = {210--229},
     11348  month = {September}
     11349}
     11350@article{Starink1996,
     11351  author = {Starink, J.P.P. and Jovin, T.M.},
     11352  title = {Background correction in scanning probe microscope recordings of macromolecules},
     11353  journal = {Surface Science},
     11354  year = {1996},
     11355  volume = {359},
     11356  pages = {291-305}
     11357}
     11358@inproceedings{Barth2000,
     11359  author = {Barth, E.},
     11360  title = {The minors of the structure tensor},
     11361  year = {2000},
     11362  pages = {221--228},
     11363  editor = {Sommer, G. and Krger, N. and Perwass, C.},
     11364  publisher = {Springer},
     11365  address = {Berlin},
     11366  booktitle = {Mustererkennung 2000}
     11367}
     11368@article{Sander2003,
     11369  author = {Sander, B. and Golas, M.M. and Stark, H.},
     11370  title = {Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra},
     11371  journal = {Journal of Structural Biology},
     11372  year = {2003},
     11373  volume = {142},
     11374  pages = {392-401}
     11375}
     11376@misc{Waagepetersen1997,
     11377  author = {Waagepetersen, R.},
     11378  title = {Contributions to the Statistical Modeling of Image Data and Spatial Point Processes},
     11379  year = {1997},
     11380  howpublished = {www},
     11381  note = {University of Aarhus}
     11382}
     11383@article{Hentschell1983,
     11384  author = {Hentschell, H.G.E. and Procaccia, I.},
     11385  title = {The Infinite Number of Generalized Dimensions of Fractals and Strange Attractors},
     11386  journal = {Physica D},
     11387  year = {1983},
     11388  volume = {8},
     11389  number = {3},
     11390  pages = {435--444}
     11391}
     11392@inproceedings{Croisier1976,
     11393  author = {Croisier, A. and Esteban, D. and Galand, C.},
     11394  title = {Perfect Channel Splitting by Use of Interpolation/Decimation/Tree Decomposition Techniques},
     11395  year = {1976},
     11396  pages = {443--446},
     11397  month = {August},
     11398  address = {Patras, Greece},
     11399  booktitle = {International Conference on Information Sciences and Systems}
     11400}
     11401@article{Barnard1980,
     11402  author = {Barnard, S.T. and Thompson, W.B.},
     11403  title = {Disparity Analysis of Images},
     11404  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11405  year = {1980},
     11406  volume = {2},
     11407  number = {4},
     11408  pages = {527--534},
     11409  month = {July}
     11410}
     11411@article{Desolneux2001,
     11412  author = {Desolneux, A. and Moisan, L. and Morel, J.-M.},
     11413  title = {Edge Detection by {Helmholtz} Principle},
     11414  journal = {Journal of Mathematical Imaging and Vision},
     11415  year = {2001},
     11416  volume = {14},
     11417  pages = {271--284}
     11418}
     11419@phdthesis{Picka1996,
     11420  author = {Picka, J.D.},
     11421  title = {Variance-Reducing Modifications for Estimators of Dependence in Random Sets},
     11422  year = {1996},
     11423  month = {December},
     11424  address = {Chicago, USA},
     11425  school = {University of Chicago}
     11426}
     11427@inproceedings{Dijk2003,
     11428  author = {Dijk, J. and Ginkel, M. van and Asselt, R.J. van and Vliet, L.J. van and Verbeek, P.W.},
     11429  title = {A new sharpness measure based on Gaussian lines and edges},
     11430  year = {2003},
     11431  volume = {2756},
     11432  pages = {149-156},
     11433  month = {Aug 25-27},
     11434  editor = {Petkov, N. and Westenberg, M.A.},
     11435  publisher = {Springer},
     11436  series = {Lecture Notes in Computer Science},
     11437  address = {Berlin},
     11438  booktitle = {CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands)}
     11439}
     11440@inproceedings{Dijk2002,
     11441  author = {Dijk, J. and Ginkel, M. van and Asselt, R.J. van and Vliet, L.J. van and Verbeek, P.W.},
     11442  title = {A new sharpness measure based on Gaussian lines and edges},
     11443  year = {2002},
     11444  pages = {39--44},
     11445  month = {June 19-21},
     11446  editor = {Deprettere, E.F. and Belloum, A. and Heijnsdijk, J.W.J. and Stappen, F. van der},
     11447  publisher = {ASCI},
     11448  address = {Delft},
     11449  booktitle = {Proc. ASCI 2002, 8th Annual Conf. of the Advanced School for Computing and Imaging}
     11450}
     11451@article{Bruijne2003,
     11452  author = {Bruijne, M. de and Niessen, W.J. and Maintz, J.B.A. and Viergever, M.A.},
     11453  title = {Localization and segmentation of aortic endografts using marker detection},
     11454  journal = {IEEE Transactions on Medical Imaging},
     11455  year = {2003},
     11456  volume = {22},
     11457  pages = {473-482}
     11458}
     11459@article{Rader1968,
     11460  author = {Rader, C.M.},
     11461  title = {Discrete {Fourier} Transforms When the Number of Data Samples is Prime},
     11462  journal = {Proceedings of the IEEE},
     11463  year = {1968},
     11464  volume = {56},
     11465  number = {6},
     11466  pages = {1107--1108},
     11467  month = {June},
     11468  annote = {key_fft}
     11469}
     11470@phdthesis{Robbins1996,
     11471  author = {Robbins, B.J.},
     11472  title = {The Detection of {2D} Image Features using Local Energy},
     11473  year = {1996},
     11474  month = {August},
     11475  address = {Australia},
     11476  school = {University of Western Australia}
     11477}
     11478@article{Ando2004,
     11479  author = {Ando, R. and Muzuno, H. and Miyawaki, A.},
     11480  title = {Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting},
     11481  journal = {Science},
     11482  year = {2004},
     11483  volume = {306},
     11484  pages = {1370-1373}
     11485}
     11486@article{Robbins1997,
     11487  author = {Robbins, B. and Owens, R.},
     11488  title = {{2D} Feature Detection via Local Energy},
     11489  journal = {Image and Vision Computing},
     11490  year = {1997},
     11491  volume = {15},
     11492  number = {5},
     11493  pages = {353--368}
     11494}
     11495@article{Stokke1990,
     11496  author = {Stokke, B.T. and Brant, D.A.},
     11497  title = {The reliability of wormlike polysaccharides chain dimensions estimated from electron micrographs},
     11498  journal = {Biopolymers},
     11499  year = {1990},
     11500  volume = {30},
     11501  number = {13},
     11502  pages = {1161-1181}
     11503}
     11504@article{Ando2000,
     11505  author = {Ando, S.},
     11506  title = {Consistent Gradient Operators},
     11507  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11508  year = {2000},
     11509  volume = {22},
     11510  number = {3},
     11511  pages = {252--265},
     11512  month = {March}
     11513}
     11514@techreport{Cullip1990,
     11515  author = {Cullip, T.J. and Fredericksen, R.E. and Gauch, J.M. and Pizer, S.M.},
     11516  title = {Algorithms for 2D and 3D Image Description Based on the IAS},
     11517  year = {1990},
     11518  institution = {University of North Carolina, U.S.A.},
     11519  note = {TR90-034}
     11520}
     11521@article{Dempster1977,
     11522  author = {Demster, A.P. and Laird, N.M. and Rubin, D.B.},
     11523  title = {Maximum Likelihood from Incomplete Data via the {EM} algorithm},
     11524  journal = {Journal of the Royal Statistical Society B},
     11525  year = {1977},
     11526  volume = {39},
     11527  pages = {1--37}
     11528}
     11529@article{Marshall1997,
     11530  author = {Marshall, W.F. and Straight, A. and Marko, J.F. and Swedlow, J. and Dernburg, A. and Murray, A.W. and Agard, D.A. and Sedat, J.W.},
     11531  title = {Interphase chromosomes undergo constrained diffusional motion in living cells},
     11532  journal = {Current Biology},
     11533  year = {1998},
     11534  volume = {7},
     11535  number = {12},
     11536  pages = {930-939}
     11537}
     11538@inproceedings{Borga1997,
     11539  author = {Borga, M. and Knutsson, H. and Landelius, T.},
     11540  title = {Learning Canonical Correlations},
     11541  year = {1997},
     11542  volume = {I},
     11543  pages = {1--8},
     11544  month = {June 9-11},
     11545  booktitle = {Proceedings of the 10th Scandinavian Conference on Image Analysis (Lappeenranta, Finland)}
     11546}
     11547@article{Perona1998,
     11548  author = {Perona, P.},
     11549  title = {Orientation Diffusions},
     11550  journal = {IEEE Transactions on Image Processing},
     11551  year = {1998},
     11552  volume = {7},
     11553  number = {3},
     11554  pages = {457--467},
     11555  month = {March}
     11556}
     11557@phdthesis{Borga1998,
     11558  author = {Borga, M.},
     11559  title = {Learning Multidimensional Signal Processing},
     11560  year = {1998},
     11561  address = {{Link\"oping, Sweden}},
     11562  school = {{Link\"oping University}}
     11563}
     11564@article{Perona1990,
     11565  author = {Perona, P. and Malik, J.},
     11566  title = {Scale-Space and Edge Detection Using Anisotropic Diffusion},
     11567  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11568  year = {1990},
     11569  volume = {12},
     11570  number = {7},
     11571  pages = {629--639},
     11572  month = {July}
     11573}
     11574@inproceedings{Wink2001,
     11575  author = {Wink, O. and Niessen, W.J. and Verdonck, B. and Viergever, M.A.},
     11576  title = {Vessel Axis Determination Using Wave Front Propagation Analysis},
     11577  year = {2001},
     11578  pages = {845-853},
     11579  editor = {Niessen, W. and Viergever, M.A.},
     11580  booktitle = {MICCAI'01}
     11581}
     11582@article{Perona1995,
     11583  author = {Perona, P.},
     11584  title = {Deformable Models for Early Vision},
     11585  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11586  year = {1995},
     11587  volume = {17},
     11588  number = {5},
     11589  pages = {488--499},
     11590  month = {May}
     11591}
     11592@book{Gauss1801,
     11593  author = {Gauss, C.F.},
     11594  title = {Disquisitiones Arithmeticae},
     11595  year = {1801},
     11596  publisher = {{K\"oniglichen Gesellschaft der Wissenschaft}},
     11597  address = {{G\"ottingen} }
     11598}
     11599@article{Dirks2003,
     11600  author = {Dirks, R.W. and Molenaar, C. and Tanke, H.J.},
     11601  title = {Visualizing {RNA} molecules inside the nucleus of living cells},
     11602  journal = {Methods},
     11603  year = {2003},
     11604  volume = {29},
     11605  number = {1},
     11606  pages = {51-57}
     11607}
     11608@article{Dirks2001,
     11609  author = {Dirks, R.W. and Molenaar, R.W. and Tanke, H.J.},
     11610  title = {Methods for visualizing RNA processing and transport pathways in living cells},
     11611  journal = {Histochemistry and Cell Biology},
     11612  year = {2001},
     11613  volume = {115},
     11614  number = {1},
     11615  pages = {3-11}
     11616}
     11617@article{Bangham1994,
     11618  author = {Bangham, J.A. and Campbell, T.G. and Aldridge, R.V.},
     11619  title = {Multiscale Median and Morphological Filters for 2D Pattern Recognition},
     11620  journal = {Signal Processing},
     11621  year = {1994},
     11622  volume = {38},
     11623  number = {3},
     11624  pages = {387--415}
     11625}
     11626@book{HandbookCP1992,
     11627  title = {Handbook of Chemistry and Physics },
     11628  year = {1992},
     11629  editor = {Lide, D.R. },
     11630  publisher = {CRC Press },
     11631  edition = {82th}
     11632}
     11633@article{Bangham1996,
     11634  author = {Bangham, J.A. and Chardaire, P. and Pye, C.J. and Ling, P.D.},
     11635  title = {Multiscale Nonlinear Decomposition: The Sieve Decomposition Theorem},
     11636  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11637  year = {1996},
     11638  volume = {18},
     11639  number = {5},
     11640  pages = {529--539},
     11641  month = {May}
     11642}
     11643@article{Clerc2002,
     11644  author = {Clerc, M. and Mallat, S.},
     11645  title = {The Texture Gradient Equation for Recovering Shape from Texture},
     11646  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11647  year = {2002},
     11648  volume = {24},
     11649  number = {4},
     11650  pages = {536--549},
     11651  month = {April}
     11652}
     11653@article{Dijkstra1959,
     11654  author = {Dijkstra, E.W.},
     11655  title = {A note on two problems in connexion with graphs.},
     11656  journal = {Numerische Mathematik },
     11657  year = {1959},
     11658  volume = {1},
     11659  pages = {269--271}
     11660}
     11661@article{Andrey1998,
     11662  author = {Andrey, P. and Tarroux, P.},
     11663  title = {Unsupervised Segmentation of {M}arkov Random Field Modeled Textured Images Using Selectionist Relaxation},
     11664  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11665  year = {1998},
     11666  volume = {20},
     11667  number = {3},
     11668  pages = {252--262},
     11669  month = {March}
     11670}
     11671@article{Hestenes1994,
     11672  author = {Hestenes, D.},
     11673  title = {Invariant Body Kinematics: {I}. Saccadic and Compensatory Eye Movements},
     11674  journal = {Neural Networks},
     11675  year = {1994},
     11676  volume = {7},
     11677  number = {1},
     11678  pages = {65--77}
     11679}
     11680@article{Osher1988,
     11681  author = {Osher, S. and Sethian, J.A.},
     11682  title = {Fronts Propagating with Curvature-Dependent Speed: Algorithms Based on {H}amilton-{J}acobi Formulations},
     11683  journal = {Journal of Computational Physics},
     11684  year = {1988},
     11685  volume = {79},
     11686  pages = {12--49}
     11687}
     11688@article{Ram2006,
     11689  author = {Ram, S. and Ward, E.S. and Ober, R.J.},
     11690  title = {Beyond {Rayleighs} criterion: {A} resolution measure with application to single-molecule microscopy},
     11691  journal = {Proceedings of the National Academy of Sciences USA},
     11692  year = {2006},
     11693  volume = {103},
     11694  number = {12},
     11695  pages = {4457-4462}
     11696}
     11697@article{Schwertner2004a,
     11698  author = {Schwertner, M. and Booth, M.J. and Neil, M.A.A. and Wilson, T.},
     11699  title = {Measurement of specimen induced aberrations of biological samples using phase stepping interferometry},
     11700  journal = {Journal of Microscopy},
     11701  year = {2004},
     11702  volume = {213},
     11703  number = {1},
     11704  pages = {11-19}
     11705}
     11706@article{Schwertner2004b,
     11707  author = {Schwertner, M. and Booth, M.J. and Wilson, T.},
     11708  title = {Simulation of specimen-induced aberrations for objects with spherical and cylindrical symmetry},
     11709  journal = {Journal of Microscopy},
     11710  year = {2004},
     11711  volume = {215},
     11712  number = {3},
     11713  pages = {271-280}
     11714}
     11715@article{Simoncelli1992,
     11716  author = {Simoncelli, E.P. and Freeman, W.T. and Adelson, E.H. and Heeger, D.J.},
     11717  title = {Shiftable Multi-scale Transforms},
     11718  journal = {IEEE Transactions on Information Theory},
     11719  year = {1992},
     11720  volume = {38},
     11721  number = {2},
     11722  pages = {587--607},
     11723  month = {March}
     11724}
     11725@article{Simoncelli1996,
     11726  author = {Simoncelli, E.P. and Farid, H.},
     11727  title = {Steerable wedge filters for local orientation analysis},
     11728  journal = {IEEE Transactions on Image Processing},
     11729  year = {1996},
     11730  volume = {5},
     11731  number = {9},
     11732  pages = {1377--1382}
     11733}
     11734@article{Viero1995,
     11735  author = {Viero, T. and Jeulin, D.},
     11736  title = {Morphological Extraction of Line Networks from Noisy Low-Contrast Images},
     11737  journal = {Journal of Visual Communication and Image Representation},
     11738  year = {1995},
     11739  volume = {6},
     11740  number = {4},
     11741  pages = {335--347},
     11742  month = {December}
     11743}
     11744@article{Simoncelli1990,
     11745  author = {Simoncelli, E.P. and Adelson, E.H.},
     11746  title = {Non-Separable Extensions of Quadrature Mirror Filters to Multiple Dimensions},
     11747  journal = {Proceedings of the IEEE},
     11748  year = {1990},
     11749  volume = {78},
     11750  number = {4},
     11751  pages = {652--664},
     11752  month = {April}
     11753}
     11754@inproceedings{Luengo2001b,
     11755  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
     11756  title = {A Rotation-Invariant Morphology for Shape Analysis of Anisotropic Objects and Structures},
     11757  year = {2001},
     11758  volume = {2059},
     11759  pages = {378--387},
     11760  editor = {Arcelli, C. and Cordella, L.P. and Sanniti, G. di Baja},
     11761  publisher = {Springer-Verlag},
     11762  series = {Lecture Notes on Computer Science},
     11763  address = {Capri, Italy},
     11764  booktitle = {Proc. 4th International Workshop on Visual Form}
     11765}
     11766@inproceedings{Luengo2001a,
     11767  author = {Luengo Hendriks, C.L. and Vliet, L.J. van},
     11768  title = {Segmentation-Free Estimation of Length Distributions Using Sieves and RIA Morphology},
     11769  year = {2001},
     11770  pages = {129--136},
     11771  publisher = {ASCI, Delft},
     11772  address = {Heijen, the Netherlands},
     11773  booktitle = {Proc. 7th Annual Conference of the Advanced School for Computing and Imaging}
     11774}
     11775@article{Khotanzad1990,
     11776  author = {Khotanzad, A. and Hong, Y.H.},
     11777  title = {Invariant Image Recognition by {Z}ernike Moments},
     11778  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11779  year = {1990},
     11780  volume = {12},
     11781  number = {5},
     11782  pages = {489--497},
     11783  month = {May}
     11784}
     11785@article{Lindenbaum1993,
     11786  author = {Lindenbaum, M. and Fischer, M. and Bruckstein, A.},
     11787  title = {On {G}abor's contribution to image enhancement},
     11788  journal = {Pattern Recognition},
     11789  year = {1993},
     11790  volume = {27},
     11791  number = {1},
     11792  pages = {1--8}
     11793}
     11794@article{Rose2002,
     11795  author = {Rose, H.},
     11796  title = {Theory of electron-optical achromats and apochromats},
     11797  journal = {Ultramicroscopy},
     11798  year = {2002},
     11799  volume = {93},
     11800  pages = {293-303}
     11801}
     11802@inproceedings{Hertzmann2001,
     11803  author = {Hertzmann, A. and Jacobs, C.E. and Oliver, N. and Curless, B. and Salesin, D.H.},
     11804  title = {Image Analogies},
     11805  year = {2001},
     11806  pages = {327--340},
     11807  publisher = {ACM Press},
     11808  booktitle = {{SIGGRAPH}, Computer Graphics Proceedings}
     11809}
     11810@article{Rose2005,
     11811  author = {Rose, H.},
     11812  title = {Prospects for aberration-free electron microscopy},
     11813  journal = {Ultramicroscopy},
     11814  year = {2005},
     11815  volume = {103},
     11816  pages = {1-6}
     11817}
     11818@article{Rioul1991,
     11819  author = {Rioul, O. and Vetterli, M.},
     11820  title = {Wavelets and Signal Processing},
     11821  journal = {IEEE Signal Processing Magazine},
     11822  year = {1991},
     11823  pages = {14--38},
     11824  month = {October}
     11825}
     11826@article{Torok1995,
     11827  author = {{T\"or\"ok}, P. and Varga, P. and Laczik, Z. and Booker, G.R. },
     11828  title = {Electromagnetic diffraction of light focused through a planar interface between materials of mismatched refractive indices: an integral representation},
     11829  journal = {Journal of the Optical Society of America A},
     11830  year = {1995},
     11831  volume = {12},
     11832  number = {2},
     11833  pages = {325-332}
     11834}
     11835@article{Acton2001,
     11836  author = {Acton, S.T.},
     11837  title = {Fast Algorithms for Area Morphology},
     11838  journal = {Digital Signal Processing},
     11839  year = {2001},
     11840  volume = {11},
     11841  pages = {187--203}
     11842}
     11843@article{Acton2000,
     11844  author = {Acton, Scott T. and Mukherjee, Dipti Prasad},
     11845  title = {Scale Space Classification Using Area Morphology},
     11846  journal = {IEEE Transactions on Image Processing},
     11847  year = {2000},
     11848  volume = {9},
     11849  number = {4},
     11850  pages = {623--635},
     11851  month = {April}
     11852}
     11853@article{Vonck2000,
     11854  author = {Vonck, J.},
     11855  title = {Parameters a?ecting specimen flatness of two-dimensional crystals for electron crystallography},
     11856  journal = {Ultramicroscopy},
     11857  year = {2000},
     11858  volume = {85},
     11859  pages = {123-129}
     11860}
     11861@book{Bishop1998,
     11862  author = {Bishop, C.M.},
     11863  title = {Neural Networks for Pattern Recognition},
     11864  year = {1998},
     11865  publisher = {Oxford University Press},
     11866  address = {New York}
     11867}
     11868@book{Bishop1995,
     11869  author = {Bishop, C.M.},
     11870  title = {Neural Networks for Pattern Recognition},
     11871  year = {1995},
     11872  publisher = {Oxford University Press}
     11873}
     11874@misc{Hough1962,
     11875  author = {Hough, P.V.C.},
     11876  title = {Method and Means for Recognizing Complex Patterns},
     11877  year = {1962},
     11878  howpublished = {US misc nr. 3069654}
     11879}
     11880@article{Clayton2004,
     11881  author = {Clayton, A.H.A. and Hanley, Q.S. and Verveer, P.J.},
     11882  title = {Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data},
     11883  journal = {Journal of Microscopy},
     11884  year = {2004},
     11885  volume = {213},
     11886  pages = {1-5}
     11887}
     11888@article{Maintz1996kort,
     11889  author = {Maintz, J.B.A. and Elsen, P.A. van den and Viergever, M.A. },
     11890  title = {Evaluation of ridge seeking operators for multimodality medical image matching },
     11891  journal = {PAMI},
     11892  year = {1996},
     11893  volume = {18},
     11894  number = {4},
     11895  pages = {353--365}
     11896}
     11897@phdthesis{SMALLSMALLGinkel2002,
     11898  author = {Ginkel, M. van},
     11899  title = {Image Analysis using Orientation Space based on Steerable Filters},
     11900  year = {2002},
     11901  address = {Delft, The Netherlands},
     11902  school = {Delft University of Technology}
     11903}
     11904@misc{Stereology2000,
     11905  title = {Summer School on Stereology and Geometric Tomography},
     11906  year = {2000},
     11907  month = {20-25 May},
     11908  howpublished = {www},
     11909  note = {Sandberg Manor, Denmark}
     11910}
     11911@article{Clayton2002,
     11912  author = {Clayton, A.H.A. and Hanley, Q.S. and Arndt-Jovin, D.J. and Subramaniam, V. and Jovin, T.M.},
     11913  title = {Dynamic Fluorescence Anisotropy Imaging Microscopy in the Frequency Domain {(rFLIM)}},
     11914  journal = {Biophysical Journal},
     11915  year = {2002},
     11916  volume = {83},
     11917  number = {3},
     11918  pages = {1631-1649}
     11919}
     11920@article{Desolneux2002,
     11921  author = {Desolneux, A. and Ladjal, S. and Moisan, L. and Morel, J.-M.},
     11922  title = {Dequantizing image orientation},
     11923  journal = {IEEE Transactions on Image Processing},
     11924  year = {2002},
     11925  volume = {11},
     11926  number = {10},
     11927  pages = {1129--1140}
     11928}
     11929@inproceedings{Bigun1987,
     11930  author = {{Big\"un}, J. and Granlund, G.H.},
     11931  title = {Optimal orientation detection of linear symmetry},
     11932  year = {1987},
     11933  pages = {433-438},
     11934  month = {June 8-11},
     11935  publisher = {IEEE Computer Society Press},
     11936  address = {London},
     11937  booktitle = {Proceedings of the first IEEE International Conference on Computer Vision}
     11938}
     11939@techreport{Bigun1986,
     11940  author = {{Big\"un}, J.},
     11941  title = {Circular Symmetry Models in Image Processing.},
     11942  number = {LIU-TEK-LIC-1986:25},
     11943  address = {{Link\"oping University}, Sweden},
     11944  institution = {Computer Vision Laboratory},
     11945  type = {Lic. Thesis},
     11946  note = {Thesis No. 85}
     11947}
     11948@article{Bowie1977a,
     11949  author = {Bowie, J.E. and Young, I.T.},
     11950  title = {An Analysis Technique for Biological Shape -- {III}},
     11951  journal = {Acta Cytologica},
     11952  year = {1977},
     11953  volume = {21},
     11954  number = {6},
     11955  pages = {739--746}
     11956}
     11957@article{Glossop1999,
     11958  author = {Glossop, K. and Lisboa, P.J.G. and Russell, P.C. and Siddans, A. and Jones, G.R.},
     11959  title = {An implementation of the Hough Transformation for the Identification and Labeling of Fixed Period Sinusoidal Curves},
     11960  journal = {Computer Vision and Image Understanding},
     11961  year = {1999},
     11962  volume = {74},
     11963  number = {1},
     11964  pages = {96--100},
     11965  month = {April},
     11966  annote = {key_radon}
     11967}
     11968@article{Crowley1984,
     11969  author = {Crowley, J.L. and Parker, A.C.},
     11970  title = {A Representation for Shape Based on Peaks and Ridges in the Difference of Low-Pass Transform},
     11971  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11972  year = {1984},
     11973  volume = {6},
     11974  number = {2},
     11975  pages = {156--170},
     11976  month = {March}
     11977}
     11978@inproceedings{Kraaijveld2000,
     11979  author = {Kraaijveld, M.A. and Epping, W.J.M.},
     11980  title = {Harnessing Advanced Image Analysis Technology for Quantitative Core and Borehole Image Interpretation},
     11981  year = {2000},
     11982  pages = {paper VV},
     11983  month = {June 4-7},
     11984  booktitle = {proceedings of the 41st SPWLA annual symposium, Dallas}
     11985}
     11986@article{Joanicot1987,
     11987  author = {Joanicot, M. and Revet, B.},
     11988  title = {{DNA} conformational studies from electron microscopy. {I. Excluded} volume effect and structure dimensionality},
     11989  journal = {Biopolymers},
     11990  year = {1987},
     11991  volume = {26},
     11992  number = {2},
     11993  pages = {315-326}
     11994}
     11995@article{Brown2003,
     11996  author = {Brown, M.Z. and Burschka, D. and Hager, G.D.},
     11997  title = {Advances in Computational Stereo},
     11998  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     11999  year = {2003},
     12000  volume = {25},
     12001  number = {8},
     12002  pages = {993--1007},
     12003  month = {August}
     12004}
     12005@article{Typke2004,
     12006  author = {Typke, D. and Duwning, K.H. and Glaeser, R.M.},
     12007  title = {Electron Microscopy of Biological Macromolecules: Bridging the GAp between What Physics Allows and What We Currently Can Get},
     12008  journal = {Microscopy and Microanalysis},
     12009  year = {2004},
     12010  volume = {10},
     12011  pages = {21-27}
     12012}
     12013@book{Simmonds1982,
     12014  author = {Simmonds, J.G.},
     12015  title = {A Brief on Tensor Analysis},
     12016  year = {1982},
     12017  publisher = {Springer-Verlag}
     12018}
     12019@article{Li2004,
     12020  author = {Li, W. and Leung, W.},
     12021  title = {A maximum likelihood approach for image registration using control point and intensity},
     12022  journal = {IEEE Transactions on Image Processing},
     12023  year = {2004},
     12024  volume = {13},
     12025  number = {8},
     12026  pages = {1115-1127}
     12027}
     12028@book{Cressie1993,
     12029  author = {Cressie, N.A.C.},
     12030  title = {Statistics for Spatial Data},
     12031  year = {1993},
     12032  publisher = {John Wiley \& Sons, inc},
     12033  edition = {Revised}
     12034}
     12035@article{McLaughlin1998,
     12036  author = {McLaughlin, R.A. and Alder, M.D.},
     12037  title = {The Hough Transform Versus the Upwrite},
     12038  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12039  year = {1998},
     12040  volume = {20},
     12041  number = {4},
     12042  pages = {396--400},
     12043  month = {April},
     12044  annote = {key_radon}
     12045}
     12046@inproceedings{Rieger2003b,
     12047  author = {Rieger, B. and Vliet, L.J. van},
     12048  title = {Representing Orientation in n-Dimensional Spaces},
     12049  year = {2003},
     12050  pages = {17-24},
     12051  month = {August 25-27 },
     12052  editor = {Petkov, N. and Westenberg, M.A.},
     12053  publisher = {Springer Verlag},
     12054  series = {LNCS 2756},
     12055  address = {Berlin},
     12056  booktitle = {CAIP'03, 10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands) }
     12057}
     12058@article{Rieger2003c,
     12059  author = {Rieger, B. and Doel, L.R. van den and Vliet, L.J. van },
     12060  title = {Ring Formation in Nanoliter Cups: Quantitative Measurements of Flow in Micromachined Wells},
     12061  journal = {Physical Review E},
     12062  year = {2003},
     12063  volume = {68},
     12064  number = {3},
     12065  pages = {036312}
     12066}
     12067@inproceedings{Rieger2003a,
     12068  author = {Rieger, B. and Molenaar, C. and Dirks, R.W. and Vliet, L.J. van},
     12069  title = {Affine correction without correspondence applied to 4D cellular motion in confocal microscopy},
     12070  year = {2003},
     12071  month = {June 4-6},
     12072  editor = {Vassiliadis, S. and Florak, L.M.J. and Heijnsdijk, J.W.J and Steen, A. van den},
     12073  booktitle = {ASCI'03, Proceedings of the 9th Annual Conference of the Advanced School for Computing and Imaging (Lommel, Belgium) }
     12074}
     12075@article{Grayson1987,
     12076  author = {Grayson, M.},
     12077  title = {The heat equation shrinks embedded plane curves to round points},
     12078  journal = {Journal of Differential Geometry},
     12079  year = {1987},
     12080  volume = {26},
     12081  pages = {285--314}
     12082}
     12083@article{Danielsson1990,
     12084  author = {Danielsson, P.-E. and Seger, O.},
     12085  title = {Rotation Invariance in Gradient and Higher Order Derivative Detectors},
     12086  journal = {Computer Vision, Graphics, and Image Processing},
     12087  year = {1990},
     12088  volume = {49},
     12089  number = {2},
     12090  pages = {198--221}
     12091}
     12092@article{Hanley2001,
     12093  author = {Hanley, Q.S. and Subramaniam, V. and Arndt-Jovin, D.J. and Jovin, T.M.},
     12094  title = {Fluorescence Lifetime Imaging: Multi-point Calibration, Minimum Resolvable Differences, and Artifact Suppression},
     12095  journal = {Cytometry},
     12096  year = {2001},
     12097  volume = {43},
     12098  pages = {248-260}
     12099}
     12100@article{Hanley2002,
     12101  author = {Hanley, Q.S. and Ardent-Jovin, D.J. and Jovin, T.M.},
     12102  title = {Spectrally resolved fluorescence lifetime imaging microscopy},
     12103  journal = {Applied Spectroscopy},
     12104  year = {2002},
     12105  number = {56},
     12106  pages = {155-166}
     12107}
     12108@article{Saffman1975,
     12109  author = {Saffman, P.G. and {Delbr\"uck}, M.},
     12110  title = {Brownian motion in biolocial membranes},
     12111  journal = {Proc. Nat. Acad. Sci. USA},
     12112  year = {1975},
     12113  volume = {72},
     12114  number = {8},
     12115  pages = {3111-3113}
     12116}
     12117@article{Casadio1999,
     12118  author = {Casadio Tarabusi, E. and Cohen, J.M. and Colonna, F.},
     12119  title = {Characterization of the Range of the {Radon} Transform on Homogeneous Trees},
     12120  journal = {Electronic Research Announcements of the American Mathematical Society},
     12121  year = {1999},
     12122  volume = {5},
     12123  pages = {11--17},
     12124  month = {February}
     12125}
     12126@article{Goldberg1991a,
     12127  author = {Goldberg, D.},
     12128  title = {What Every Computer Scientist Should Know about Floating-Point Arithmetic},
     12129  journal = {ACM Computing Surveys},
     12130  year = {1991},
     12131  volume = {23},
     12132  number = {1},
     12133  pages = {5--48},
     12134  note = {A reprint. Extended?}
     12135}
     12136@article{Willert1991,
     12137  author = {Willert, C.E. and Gharib, M.},
     12138  title = {Digital particle image velocimetry},
     12139  journal = {Experiments in Fluids},
     12140  year = {1991},
     12141  volume = {10},
     12142  pages = {181-193}
     12143}
     12144@article{Soille2001,
     12145  author = {Soille, Pierre and Talbot, Hugues},
     12146  title = {Directional Morphological Filtering},
     12147  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12148  year = {2001},
     12149  volume = {23},
     12150  number = {11},
     12151  pages = {1313--1329},
     12152  month = {November}
     12153}
     12154@article{Soille2002,
     12155  author = {Soille, P.},
     12156  title = {Short Survey on Morphological Operators Based on Rank Filters},
     12157  journal = {Pattern Recognition},
     12158  year = {2002},
     12159  volume = {35},
     12160  pages = {527-535}
     12161}
     12162@book{Landau1999,
     12163  author = {Landau, L.D. and Lifshitz, E.M.},
     12164  title = {Statistical Physics, Part 1},
     12165  year = {1999},
     12166  publisher = {Butterworth-Heinemann},
     12167  edition = {third}
     12168}
     12169@article{Rintoul1997,
     12170  author = {Rintoul, M.D. and Torquato, S.},
     12171  title = {Precise determination of the critical threshold and exponents in a three-dimensional continuum percolation model},
     12172  journal = {J. Phys. A: Math Gen},
     12173  year = {1997},
     12174  volume = {30},
     12175  pages = {585--592}
     12176}
     12177@article{Belongie2002,
     12178  author = {Belongie, S. and Malik, J. and Puzicha, J.},
     12179  title = {Shape Matching and Object Recognition Using Shape Contexts},
     12180  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12181  year = {2002},
     12182  volume = {24},
     12183  number = {4},
     12184  pages = {509--522},
     12185  month = {April}
     12186}
     12187@phdthesis{Reinders2001,
     12188  author = {Reinders, F.},
     12189  title = {Feature-Based Visualization of Time-Dependent Data},
     12190  year = {2001},
     12191  address = {The Netherlands},
     12192  school = {Delft University of Technology}
     12193}
     12194@article{Deans1981,
     12195  author = {Deans, S.R.},
     12196  title = {{H}ough Transform from the {R}adon Transform},
     12197  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12198  year = {1981},
     12199  volume = {3},
     12200  number = {2},
     12201  pages = {185--188},
     12202  month = {March},
     12203  annote = {key_radon}
     12204}
     12205@article{Meijering2003,
     12206  author = {Meijering, E. and Unser, M.},
     12207  title = {A Note on Cubic Convolution Interpolation},
     12208  journal = {IEEE Transactions on Image Processing},
     12209  year = {2003},
     12210  volume = {12},
     12211  number = {4},
     12212  pages = {477--479},
     12213  month = {April}
     12214}
     12215@article{Meijering2002,
     12216  author = {Meijering, E.},
     12217  title = {A Chronology of Interpolation: From Ancient Astronomy to Modern Signal and Image Processing},
     12218  journal = {Proceedings of the IEEE},
     12219  year = {2002},
     12220  volume = {90},
     12221  number = {3},
     12222  pages = {319--342},
     12223  month = {March}
     12224}
     12225@incollection{Jovin1989,
     12226  author = {Jovin, T.M. and Arndt-Jovin, D.J.},
     12227  title = {{FRET} Microscopy: Digital Imaging of Fluorescence Resonance Energy Transfer. Application in Cell Biology},
     12228  year = {1989},
     12229  pages = {99-117},
     12230  editor = {Kohen, E.},
     12231  publisher = {Academic Press},
     12232  address = {New York},
     12233  booktitle = {Cell Structure and Function by Microspectrofluorometry}
     12234}
     12235@article{Egner2004,
     12236  author = {Egner, A. and Verrier, S. and Goroshkov, A. and S?ing, H-D. and Hell, S.W.},
     12237  title = {{4Pi}-microscopy of the {Golgi} apparatus in live mammalian cells},
     12238  journal = {Journal of Structural Biology},
     12239  year = {2004},
     12240  volume = {147},
     12241  number = {1},
     12242  pages = {70-76}
     12243}
     12244@article{Dorst1987,
     12245  author = {Dorst, L. and Smeulders, A.W.M.},
     12246  title = {Length Estimators for Digitized Contours},
     12247  journal = {Computer Vision, Graphics and Image Processing},
     12248  year = {1987},
     12249  volume = {40},
     12250  pages = {311--333}
     12251}
     12252@article{Dorst1986,
     12253  author = {Dorst, L. and Smeulders, A.W.M.},
     12254  title = {Best Linear Unbiased Estimators for Properties of Digitized Straight Lines},
     12255  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12256  year = {1986},
     12257  volume = {8},
     12258  number = {2},
     12259  pages = {276--282},
     12260  month = {March}
     12261}
     12262@incollection{Olver1994,
     12263  author = {Olver, P. and Sapiro, G. and Tannenbaum, A.},
     12264  title = {Differential invariant signatures and flows in computer vision: a symmetry group approach},
     12265  year = {1994},
     12266  pages = {255--306},
     12267  editor = {Ter Haar Romeny B.M.},
     12268  publisher = {Kluwer Academic Publishers},
     12269  chapter = {11},
     12270  booktitle = {Geometry-driven diffusion in computer vision}
     12271}
     12272@techreport{Dorst1980,
     12273  author = {Dorst, L.},
     12274  title = {A Coordinate System for the Crystal Ball},
     12275  year = {1980},
     12276  institution = {CERN}
     12277}
     12278@article{Hoyer2002,
     12279  author = {Hoyer, W. and Antony, T. and Cherny, D.I. and Heim, G. and Jovin, T.M. and Subramaniam, V.},
     12280  title = {Dependence of $\alpha$-synuclein aggregate morphology on solution conditions},
     12281  journal = {Journal of Molecular Biology},
     12282  year = {2002},
     12283  volume = {322},
     12284  number = {2},
     12285  pages = {383-393}
     12286}
     12287@inproceedings{Ginneken1999,
     12288  author = {Ginneken, B. van and Haar Romeny, B. M. ter},
     12289  title = {Applications of Locally Orderless Images},
     12290  volume = {1682},
     12291  pages = {10--21},
     12292  editor = {Nielsen, Mads and Johansen, Peter and Olsen, Ole F. and Weickert, Joachim},
     12293  publisher = {Springer-Verlag},
     12294  series = {Lecture Notes on Computer Science},
     12295  booktitle = {Scale-Space Theories in Computer Vision (Second International Conference, Scale-Space'99, Corfu, Greece)}
     12296}
     12297@article{Mitiche1988,
     12298  author = {Mitiche, A. and Grisell, R. and Aggarwal, J.K.},
     12299  title = {On smoothness of a vector field-application to optical flow},
     12300  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
     12301  year = {1988},
     12302  volume = {10},
     12303  number = {6},
     12304  pages = {943--949}
     12305}
     12306@article{Cognet1999,
     12307  author = {Cognet, J.A.H. and Pakleza, C. and Cherny, D.I. and Delain, E. and Cam, E. le},
     12308  title = {Static curvature and flexibility measurements of {DNA} with microscopy. {A} simple renormalization method, its assessment by experiment and simulation},
     12309  journal = {Journal of Molecular Biology},
     12310  year = {1999},
     12311  volume = {285},
     12312  number = {3},
     12313  pages = {997-1009}
     12314}
     12315@article{Segall2006,
     12316  author = {Segall, D.E. and Nelson, P.C. and Phillips, R.},
     12317  title = {Volume-Exclusion Effects in Tethered-Particle Experiments: Bead Size Matters},
     12318  journal = {Physical Review Letters},
     12319  year = {2006},
     12320  volume = {96},
     12321  pages = {088306}
     12322}
     12323@article{Krieger1996,
     12324  author = {Krieger, G. and Zetzsche, C.},
     12325  title = {Nonlinear Image Operators for the Evaluation of Local Intrinsic Dimensionality},
     12326  journal = {IEEE Transactions on Image Processing},
     12327  year = {1996},
     12328  volume = {5},
     12329  number = {6},
     12330  pages = {1026--1042},
     12331  month = {June}
     12332}
     12333@book{Rudin1991,
     12334  author = {Rudin, W.},
     12335  title = {Functional Analysis},
     12336  year = {1991, 1973},
     12337  publisher = {McGraw-Hill},
     12338  edition = {second}
     12339}
     12340@article{Mattfeldt2000a,
     12341  author = {Mattfeldt, T. and Stoyan, D.},
     12342  title = {Improved Estimation of the Pair Correlation Function of Random Sets},
     12343  journal = {Journal of Microscopy},
     12344  year = {2000},
     12345  volume = {200, Pt 2},
     12346  pages = {158--173},
     12347  month = {November}
     12348}
     12349@article{Toprak2007,
     12350  author = {Toprak, E. and Balci, H. and Blehm, B.H. and  Selvin, P.R.},
     12351  title = {Three-Dimensional Particle Tracking via Bifocal Imaging},
     12352  journal = {Nano Letter},
     12353  year = {2007},
     12354  volume = {7},
     12355  number = {7},
     12356  pages = {2043-2045}
     12357}
     12358@article{Xu2010,
     12359  author = {Xu, Q. and Dyck, D. van and Zandbergen, H.W.},
     12360  title = {From thickness dependent exit waves to projected potential: Thickness derivative approach},
     12361  journal = {Ultramicroscopy},
     12362  year = {2010},
     12363  volume = {110},
     12364  pages = {535-542}
     12365}
     12366@article{Zewail2010,
     12367  author = {Zewail, A. H. and },
     12368  title = {Four-Dimensional Electron Microscopy},
     12369  journal = {Science},
     12370  year = {2010},
     12371  volume = {328},
     12372  pages = {187-193}
     12373}
     12374@article{Pertsinidis2010,
     12375  author = {Pertsinidis, A. and Zhang, Y. and Chu, S.},
     12376  title = {Subnanometre single-molecule localization, registration and distance measurements},
     12377  journal = {Nature},
     12378  year = {2010}
     12379}
     12380@article{Okamoto2010,
     12381  author = {Okamoto, H.},
     12382  title = {Subnanometre single-molecule localization,
     12383registration and distance measurements},
     12384  journal = {Physical Review A},
     12385  year = {2010},
     12386  volume = {38},
     12387  pages = {043807}
     12388}
     12389@article{Muller2010,
     12390  author = {{M\"uller}, C.B. and Enderlein, J.},
     12391  title = {Image Scanning Microscopy},
     12392  journal = {Physical Review Letters},
     12393  year = {2010},
     12394  volume = {104},
     12395  pages = {198101}
     12396}
     12397@article{Jonge2010,
     12398  author = {Jonge, N. de and Poirier-Demes, N. and Dermes, H. and Peckys, D.B. and Drouin, D.},
     12399  title = {Nanometer-resolution electron microscopy through micrometers-thick water layers},
     12400  journal = {Ultramicroscopy},
     12401  year = {2010},
     12402  volume = {110},
     12403  pages = {1114-1119}
     12404}
     12405@article{Kouskousis2010,
     12406  author = {Kouskousis, B.P. and Embden J. van and Morrish, D. and Russell, S.M. and Gu, M.},
     12407  title = {Super-resolution imaging and statistical analysis
     12408of {CdSe/CdS} Core/Shell semiconductor nanocrystals},
     12409  journal = {Journal of Biophotonics},
     12410  year = {2010},
     12411  volume = {3},
     12412  number = {7},
     12413  pages = {437-445}
     12414}
     12415@article{Stark2001,
     12416  author = {Stark, H. and Dube, P. and {L\"uhrmann}, R. and Kastner, B.},
     12417  title = {Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle},
     12418  journal = {Nature},
     12419  year = {2001},
     12420  volume = {409},
     12421  pages = {539-541}
     12422}
     12423@article{Milazzo2010,
     12424  author = {Milazzo, A-C. and Moldovan, G. and Lanman, J. and Jin, L. and Bouwer, J.C. and Klienfelder, S. and Peltier, S.T. and Ellisman, M.H. and Kirkland, A.I. and Xoung, N.-H.},
     12425  title = {Characterization of a direct detection device imaging camera for transmission electron microscopy},
     12426  journal = {Ultramicroscopy},
     12427  year = {2010},
     12428  volume = {110},
     12429  pages = {744-747}
     12430}
     12431@article{Lupini2010,
     12432  author = {Lupini, A.R. and Wang, P. and Nellist, P.D. and Kirkland, A.I. and Pennycook, S.J.},
     12433  title = {Aberration measurement using the Ronchigram contrast transfer function},
     12434  journal = {Ultramicroscopy},
     12435  year = {2010},
     12436  volume = {110},
     12437  pages = {891-898}
     12438}
     12439@article{Saxton1982,
     12440  author = {Saxton, W.O and Baumeister, W.},
     12441  title = {The correlation averaging of a regularly arranged bacterial cell envelope protein},
     12442  journal = {Journal of Microscopy},
     12443  year = {1982},
     12444  volume = {127},
     12445  number = {2},
     12446  pages = {127-138}
     12447}
     12448@article{Rudnaya2010,
     12449  author = {Rudnaya, M.E. and Mattheij, R.M.M. and Maubach, J.M.L.},
     12450  title = {Evaluating sharpness functions for automated scanning
     12451electron microscopy},
     12452  journal = {Journal of Microscopy},
     12453  year = {2010}
     12454}
     12455@inproceedings{Brinkers2010,
     12456  author = {Brinkers, Sanneke and Dietrich, Heidelinde R. C. and Stallinga, Sjoerd and Mes, Jurriaan J. and Young, Ian T. and Rieger, Bernd},
     12457  title = {Single Molecule Detection Of Tuberculosis Nucleic Acid Using Dark Field Tethered Particle Motion},
     12458  year = {2010},
     12459  pages = {1269},
     12460  month = {April 14-17},
     12461  address = {Rotterdam, The Netherlands},
     12462  booktitle = {IEEE International Symposium on Biomedical Imaging}
     12463}
     12464@article{Cordes2010,
     12465  author = {Cordes, T. and Vogelsang, J. and Anaya, M. and Spaguolo, C. and Gietl, A. and Summerer, W. and Herrmann, A. and {M\"ullen}, K. and Tinnefeld, P.},
     12466  title = {Single-Molecule Redox Blinking of Perylene Diimide
     12467Derivatives in Water},
     12468  journal = {Journal of the American Chemical Society},
     12469  year = {2010}
     12470}
     12471@article{Jiang2010,
     12472  author = {Jiang, L. and Liu, Z. and Georgieva, D. and Kuil, M.E. and Abrahams, J.P.},
     12473  title = {A novel approximation method of CTF amplitude correction of 3D single particle reconstruction},
     12474  journal = {Ultramicroscopy},
     12475  year = {2010}
     12476}
     12477@article{Dwyer2010,
     12478  author = {Dwyer, C.},
     12479  title = {Simulation of scanning transmission electron microscope images on desktop computers},
     12480  journal = {Ultramicroscopy},
     12481  year = {2010},
     12482  volume = {110},
     12483  pages = {195-198}
     12484}
     12485@article{Tamura2010,
     12486  author = {Tamrua, K. and Okayama, S. and Shimizu, R.},
     12487  title = {Third-order spherical aberration correction using multistage self-aligned quadrupole correction-lens systems},
     12488  journal = {Journal of Electron Microscopy},
     12489  year = {2010}
     12490}
     12491@article{Paik2009,
     12492  author = {Paik, D.H. and Seol, Y. and Halsey, W.A. and Perkins, T.T.},
     12493  title = {Integrating a High-Force Optical Trap with Gold Nanoposts and a Robust Gold-DNA Bond},
     12494  journal = {Nano Letters},
     12495  year = {2009},
     12496  volume = {9},
     12497  number = {8},
     12498  pages = {2978-2983}
     12499}
     12500@article{Oijen1998,
     12501  author = {Oijen, A.M. van and {K\"ohler}, J. and Schmidt, J. and {M\"uller}, M. and Brakenhoff, G.J.},
     12502  title = {3-Dimensional super-resolution by spectrally selective imaging},
     12503  journal = {Chemical Physics Letters},
     12504  year = {1998},
     12505  volume = {292},
     12506  pages = {183-187}
     12507}
     12508@article{Marzetta1993,
     12509  author = {Marzetta, T.L.},
     12510  title = {A Simple derivation of the constrained multiple parameter Cramer-Rao Bound},
     12511  journal = {IEEE Transactions on Signal Processing},
     12512  year = {1993},
     12513  volume = {41},
     12514  number = {6},
     12515  pages = {2247-2249}
     12516}
     12517@article{Mortensen2010,
     12518  author = {Mortensen, K.I. and Churchman, L.S. and Spudich, J.A. and Flyvbjerg},
     12519  title = {Optimized localization analysis for single-molecule tracking and super-resolution microscopy},
     12520  journal = {Nature Methods},
     12521  year = {2010},
     12522  volume = {7},
     12523  number = {5},
     12524  pages = {377-384}
     12525}
     12526@article{Chang2010,
     12527  author = {Chang, W-H. and Chiu, M.T.K. and CHen, C.-Y. and Yen, C.F. and Lin,Y.-C. and Weng, Y.-P. and Chang, J.-C. and Wu, Y.-M. and Cheng, H. and Fu, J. and Tu, I-P.},
     12528  title = {Zernike Phase Plate Cryoelectron Microscopy
     12529Facilitates Single Particle Analysis of Unstained
     12530Asymmetric Protein Complexes},
     12531  journal = {Structure},
     12532  year = {2010},
     12533  volume = {18},
     12534  pages = {17-27}
     12535}
     12536@article{Smith2010,
     12537  author = {Smith, C.S. and Joseph, N. and Rieger, B. and Lidke, K.A.},
     12538  title = {Fast, single-molecule localization that achieves theoretically minimum uncertainty},
     12539  journal = {Nature Methods},
     12540  year = {2010},
     12541  volume = {7},
     12542  number = {5},
     12543  pages = {373-375}
     12544}
     12545@article{Serge2008,
     12546  author = {Serge, A. and Bertaux, N. and Rigneault, H. and Marguet, D.},
     12547  title = {Dynamic multiple-target tracing to probe
     12548spatiotemporal cartography of cell membranes},
     12549  journal = {Nature Methods},
     12550  year = {2008},
     12551  volume = {5},
     12552  number = {8},
     12553  pages = {687-694}
     12554}
     12555@article{Aguet2005,
     12556  author = {Aguet, F. and Ville, D. van de and Unser, M.},
     12557  title = {Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes},
     12558  journal = {Optics Express},
     12559  year = {2005},
     12560  volume = {13},
     12561  number = {26},
     12562  pages = {10503-10522}
     12563}
     12564@article{Harauz1997,
     12565  author = {Harauz, G. and Heel, M. van},
     12566  title = {Exact filters for general geometry three dimensional reconstruction},
     12567  journal = {Optik},
     12568  year = {1997},
     12569  volume = {78},
     12570  number = {4},
     12571  pages = {146-156}
     12572}
     12573@article{Lingwood2009,
     12574  author = {Lingwood, D. and Simons, K.},
     12575  title = {Lipid rafts as a membrane organizing principle},
     12576  journal = {Science},
     12577  year = {2009},
     12578  volume = {327},
     12579  pages = {46-53}
     12580}
     12581@article{Baddeley2010,
     12582  author = {Baddeley, D. and Cannell, M.B. and Soeller, C.},
     12583  title = {Visualization of localization microscopy data},
     12584  journal = {Microscopy and Microanalysis},
     12585  year = {2010},
     12586  volume = {16},
     12587  pages = {64-72}
     12588}
     12589@inbook{Krivanek2010,
     12590  author = {Krivanek, O.L. and Delby, N. and Keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.},
     12591  title = {Advances in Imaging and Electron Physics},
     12592  year = {2010},
     12593  volume = {153},
     12594  pages = {121-160},
     12595  publisher = {Elsevier},
     12596  chapter = {Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy}
     12597}
     12598@article{Jaqaman2008,
     12599  author = {Jaqaman, K. and Loerke, D. and Mettlen, M. and Kuwara, H. and Grinstein, S. and Schmid, S.L. and Danuser, G.},
     12600  title = {Robust single-particle tracking in live-cell time-lapse sequences},
     12601  journal = {Nature Methods},
     12602  year = {2008},
     12603  volume = {5},
     12604  number = {8},
     12605  pages = {695-702}
     12606}
     12607@article{Li2010,
     12608  author = {Li, T. and Kheifets, S. and Medellin, D. and Raizen, M.G.},
     12609  title = {Measurement of the Instantaneous Velocity of a Brownian Particle},
     12610  journal = {Science},
     12611  year = {2010},
     12612  volume = {328},
     12613  pages = {1673-1676}
     12614}
     12615@article{Kwon2010,
     12616  author = {Kwon, O.-H. and Zewail, A.H.},
     12617  title = {4D Electron Tomography},
     12618  journal = {Science},
     12619  year = {2010},
     12620  number = {328},
     12621  pages = {1668-1673}
     12622}
     12623@article{Brinkers2009,
     12624  author = {Brinkers, S. and Dietrich, H.R.C. and Groote, F.H. de and Young, I.T. and Rieger, B.},
     12625  title = {The Persistence Length of Double Stranded {DNA} Determined Using Dark Field Tethered Particle Motion},
     12626  journal = {Journal of Chemical Physics},
     12627  year = {2009},
     12628  volume = {130},
     12629  number = {21},
     12630  pages = {215105}
     12631}
     12632@article{Snijdervanderas2009,
     12633  author = {Snijder-van As, M.I. and Rieger, B. and Joosten, B. and Figdor, C. and Subramaniam, V. and Kanger, J.S.},
     12634  title = {A hybrid total internal reflection fluorescence and optical tweezers microscope to study cell adhesion and membrane protein dynamics of single living cells },
     12635  journal = {Journal of Microscopy},
     12636  year = {2009},
     12637  volume = {223},
     12638  number = {1},
     12639  pages = {84-92}
     12640}
     12641@article{Faas2009,
     12642  author = {Faas, F.G.A. and Rieger, B. and Vliet, L.J. van and Cherny, D.I.},
     12643  title = {{DNA} deformations near charged surfaces: electron and atomic force microscopy views},
     12644  journal = {Biophysical Journal},
     12645  year = {2009},
     12646  volume = {97},
     12647  number = {4},
     12648  pages = {1148-1157}
     12649}
     12650@article{Castaldo2008,
     12651  author = {Castaldo, V. and  Hagen, C.W. Rieger, B. and Kruit, P.},
     12652  title = {Sputtering limits versus signal-to-noise limits in the observation of {Sn} balls in a {Ga+} microscope},
     12653  journal = {Journal of Vacuum Science and Technology B},
     12654  year = {2008},
     12655  volume = {26},
     12656  number = {6},
     12657  pages = {2107-2115}
     12658}
     12659@article{Lidke2010,
     12660  author = {Lidke, D.S. and Huang, F. and Post, J.N. and Rieger, B. and Thomas, J.L.and Pouyssegur, J. and Jovin, T.M. and Lenormand, P. },
     12661  title = {ERK nuclear translocation is dimerization-independent but controlled by the rate of phosphorylation},
     12662  journal = {Journal of Biological Chemistry},
     12663  year = {2010},
     12664  volume = {285},
     12665  pages = {3092-3102}
     12666}
     12667@inbook{Hagen2008,
     12668  author = {Hagen, G.M. and Lidke, K.A. and Rieger, B. and Lidke,  D.S. and Caarls, W. and  Arndt-Jovin, D.J. and Jovin, T.M.},
     12669  title = {Single Molecule Dynamics in Life Sciences},
     12670  year = {2008},
     12671  pages = {117-130},
     12672  editor = {Yanagida, T. and Ishii, Y.},
     12673  publisher = {Wiley},
     12674  chapter = {Dynamics of membrane receptors: single molecule tracking of quantm dot liganded epidermal growth factor}
     12675}
     12676@article{Haider2010,
     12677  author = {Haider, M .and Hartel, P. and {M\"uller}, H. and Uhlemann, S. and Zach, J.},
     12678  title = {Information Transfer in a TEM Corrected for Spherical
     12679and Chromatic Aberration},
     12680  journal = {Microscopy and Microanalysis},
     12681  year = {2010},
     12682  volume = {16},
     12683  pages = {393-408}
     12684}
     12685@article{Borgnia2004,
     12686  author = {Borgnia, M.J. and Shi, D. and Zhang, P. and Milne, J.L.S.},
     12687  title = {Visualization of $\alpha$-helical features in a density map constructed using 9 molecular images of the {1.8MDa} icosahedral core of pyruvate dehydrogenase},
     12688  journal = {Journal of Structural Biology},
     12689  year = {2004},
     12690  volume = {147},
     12691  pages = {136-145}
     12692}
     12693@article{Dubochet1988,
     12694  author = {Dubochet, J. and Adrian, M. and Chang, J.-J. and Homo, J.-C. and Lepault, J. and McDowall, A.W.and Schultz, P.},
     12695  title = {Cryo-electron microscopy of vitrified specimens},
     12696  journal = {Quarterly Review of Biophysics},
     12697  year = {1988},
     12698  volume = {21},
     12699  pages = {129-228}
     12700}
     12701@article{Khursheed2007,
     12702  author = {Khursheed, A. and Hoang, H.Q.},
     12703  title = {Redesign of the scanning electron microscope for parallel energy spectral acquisition},
     12704  journal = {Ultramicroscopy},
     12705  year = {2007},
     12706  volume = {108},
     12707  pages = {151-157}
     12708}
     12709@article{Arslan2006,
     12710  author = {Arslan, I. and Tong, J.R. and Midgley, P.A.},
     12711  title = {Reducing the missing wedge: High-resolution dual axis tomography of inorganic materials},
     12712  journal = {Ultramicroscopy},
     12713  year = {2006},
     12714  volume = {106},
     12715  pages = {944-1000}
     12716}
     12717@article{Dierksen1992,
     12718  author = {Dierksen, K. and Typke, D. and Hegerl, R. and Koster, A.J. and Baumeister, W.},
     12719  title = {Towards automatic electron tomography},
     12720  journal = {Ultramicroscopy},
     12721  year = {1992},
     12722  volume = {40},
     12723  pages = {71-87}
     12724}
     12725@book{Born1999,
     12726  author = {Born, M. and Wolf, E.},
     12727  title = {Principles of Optics},
     12728  year = {1999},
     12729  publisher = {Cambridge University Press},
     12730  edition = {7th}
     12731}
     12732@article{Dyck1996,
     12733  author = {Dyck, D. van and Lichte, H. and Mast, K.D. van der},
     12734  title = {Sub-{\aa}ngstr{\"o}m structure characterisation: the {Brite-Euram} route towarde one {\AA}ngstr{\"o}m},
     12735  journal = {Ultramicroscopy},
     12736  year = {1996},
     12737  volume = {64},
     12738  pages = {1-15}
     12739}
     12740@article{Billinge2007,
     12741  author = {Billinge, S.J.L. and Levin, I.},
     12742  title = {The Problem with Determining Atomic Structure at the Nanoscale},
     12743  journal = {Science},
     12744  year = {2007},
     12745  volume = {316},
     12746  pages = {561-565}
     12747}
     12748@article{Stoeger2008,
     12749  author = {Stoeger-Pollach, M.},
     12750  title = {Optical properties and bandgaps from low loss EELS: Pitfalls and solutions},
     12751  journal = {Micron},
     12752  year = {2008},
     12753  volume = {39},
     12754  pages = {1092-1110}
     12755}
     12756@article{Kim1997a,
     12757  author = {Kim, H.S. and Yu, M.L. and Thomson, M.G.R. and Kratchmer, E. and Chang, T.H.P.},
     12758  title = {Performance of Zr/O/W Schottky emitters at reduced temperatures},
     12759  journal = {Journal of Vaccum Science and Technology B},
     12760  year = {1997},
     12761  volume = {15},
     12762  pages = {2284-2288}
     12763}
     12764@inproceedings{Mitterbauer2003a,
     12765  author = {Mitterbauer, C. and Kothleitner, G. and Hofer, F. and Tiemeijer, P.C. and Freitag, B.H. and Zandbergen, H.W.},
     12766  title = {High energy resolution {EELS} using a monochromoized {200kV TEM}: Comparative investigation of titanum oxides},
     12767  year = {2003},
     12768  volume = {9S3},
     12769  pages = {1-2},
     12770  booktitle = {Microscoc. Microanal.}
     12771}
     12772@article{Gyobu2004,
     12773  author = {Gyobu, N. and Tani, K. and Hiroaki, Y. and Kamegawa, A. and Mitsuoka, K. and Fujiyoshi, Y.},
     12774  title = {Improved specimen preparation for cryo-electron microscopy using a symmetric carbon sandwich technique},
     12775  journal = {Journal of Structural Biology},
     12776  year = {2004},
     12777  volume = {146},
     12778  pages = {325-333}
     12779}
     12780@article{Hebert2003,
     12781  author = {Hebert, C. and Schattschneider, P.},
     12782  title = {A proposal for dichroic experiments in the electron microscope},
     12783  journal = {Ultramicroscopy},
     12784  year = {2003},
     12785  volume = {96},
     12786  pages = {463-468}
     12787}
     12788@article{Oshima2010,
     12789  author = {Oshima, Y. and et al.},
     12790  title = {Direct imaging of lithium atoms in {$LiV_2O_4$} by spherical aberration-corrected electron microscopy},
     12791  journal = {Journal of Electron Microscopy},
     12792  year = {2010},
     12793  pages = {1-5}
     12794}
     12795@article{Ishitani2002,
     12796  author = {Ishitani, T. and Sato, M.},
     12797  title = {Contrast-to-gradient method for the evaluation of image resolution in scanning electron microscopy},
     12798  journal = {Journal of Electron Mircoscopy},
     12799  year = {2002},
     12800  volume = {51},
     12801  number = {6},
     12802  pages = {369-382}
     12803}
     12804@article{Ishitani2005,
     12805  author = {Ishitani, T. and Kamiya, C. and Sato, M.},
     12806  title = {Influence of random noise on the contrast-to-gradient image resolution in scanning electron microscopy},
     12807  journal = {Journal of Electron Mircoscopy},
     12808  year = {2005},
     12809  volume = {54},
     12810  number = {2},
     12811  pages = {85-97}
     12812}
     12813@article{Ishitani2004,
     12814  author = {Ishitani, T. and Sato, M.},
     12815  title = {Contrast-to-gradient method for the evaluation of image resolution taking account of random noise in scanning electron microscopy},
     12816  journal = {Journal of Electron Mircoscopy},
     12817  year = {2004},
     12818  volume = {53},
     12819  number = {3},
     12820  pages = {245-255}
     12821}
     12822@article{Loane1991,
     12823  author = {Loane, R.F. and Xu, P. and Slicox, J.},
     12824  title = {Thermal vibrations in convergent-beam electron diffraction},
     12825  journal = {Acta Crystallography},
     12826  year = {1991},
     12827  volume = {A47},
     12828  pages = {267-278}
     12829}
     12830@article{Zaneti2009,
     12831  author = {Zaneti, G. and Riches, J.D. and Fuller, S.D. and Briggs, J.A.G.},
     12832  title = {Contrast transfer function correction applied to cryo-electron tomography and sub-tomogram averaging},
     12833  journal = {Journal of Structural Biology},
     12834  year = {2009},
     12835  volume = {168},
     12836  pages = {305-312}
     12837}
     12838@article{Diez2006,
     12839  author = {Diez, D.C. and Seybert, A. and Frangakis, A.S.},
     12840  title = {Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis},
     12841  journal = {Journal of Strcutural Biology},
     12842  year = {2006},
     12843  volume = {154},
     12844  number = {2},
     12845  pages = {195-205}
     12846}
     12847@article{Diez2007,
     12848  author = {Diez, C.D. and Mueller, H. and Frangakis, A.S.},
     12849  title = {Implementation and performance evaluation of reconstruction algorithms on graphics processors},
     12850  journal = {Journal of Strcutural Biology},
     12851  year = {2007},
     12852  volume = {157},
     12853  pages = {288-295}
     12854}
     12855@article{Barth1996,
     12856  author = {Barth, J. E. and Kruit, P.},
     12857  title = {Addition of different contributions to the charged particle probe size},
     12858  journal = {Optik},
     12859  year = {1996},
     12860  volume = {101},
     12861  pages = {101-109}
     12862}
     12863@article{Uchida2010,
     12864  author = {Uchida, M. and Tonomura, A.},
     12865  title = {Generation of electron beams carrying orbital angular momentum},
     12866  journal = {Nature},
     12867  year = {2010},
     12868  volume = {464}
     12869}
     12870@article{Jacobsen2001,
     12871  author = {Jacobsen, C. and Wirick, S. and Flynn, G. and Zimba, C.},
     12872  title = {Soft X-ray spectroscopy from image sequences with sub-100nm spatial resolution},
     12873  journal = {Journal of Microscopy},
     12874  year = {2001},
     12875  volume = {197},
     12876  number = {2},
     12877  pages = {173-184}
     12878}
     12879@article{Hammel1995,
     12880  author = {Hammel, M. and Rose, H.},
     12881  title = {Optimum rotationally symmetric detector configurations for phase-contrast imaging in scanning transmission electron microscopy},
     12882  journal = {Ultramicroscopy},
     12883  year = {1995},
     12884  volume = {58},
     12885  pages = {403-415}
     12886}
     12887@article{Braat2005,
     12888  author = {Braat, J.J.M. and Dirksen, P. and Janssen, A.J.E.M. and Haver, S. van and Nes, S. van de},
     12889  title = {Extended {Nijboer-Zernike} approach to aberration and birefringence retrieval in a high-numerical-aperture optical system},
     12890  journal = {Journal of the Optical Society of America A},
     12891  year = {2005},
     12892  volume = {22},
     12893  number = {12},
     12894  pages = {2635-26550}
     12895}
     12896@article{Swanson2009,
     12897  author = {Swanson, L.W. and Schwind, G.A.},
     12898  title = {A review of the cold-field electron cathode},
     12899  journal = {Advances in Imaging and Electron Physics},
     12900  year = {2009},
     12901  volume = {159},
     12902  pages = {63-100}
     12903}
     12904@article{Nakanishi2005,
     12905  author = {Nakanishi, N. and Kotaka, Y. and Yamazaki, T.},
     12906  title = {An expanded approach to noise reduction from high-resolution STEM images based on the maximum entropy method},
     12907  journal = {Ultramicroscopy},
     12908  year = {2005},
     12909  note = {accepted}
     12910}
     12911@article{Carragher2000,
     12912  author = {Carragher, B. and Kisseberth, N. and Kriegman, D. and Milligan, R.A. and Potter, C.S. and Pulokas, J. and Reilein, A.},
     12913  title = {Leginon: an automated system for acquisition of images from vitrecus ice specimens},
     12914  journal = {Journal of Structural Biology},
     12915  year = {2000},
     12916  volume = {132},
     12917  pages = {33-45}
     12918}
     12919@article{Finn2000,
     12920  author = {Finn, R.D. and Orlova, E.V. and Gowen, B. and Buck, M. and Heel, M. van},
     12921  title = {Escherichia coli {RNA} polymerase core and holoenzyme structures},
     12922  journal = {EMBO Journal},
     12923  year = {2000},
     12924  volume = {19},
     12925  number = {24},
     12926  pages = {6833-6844}
     12927}
     12928@article{Rubenstein2007,
     12929  author = {Rubenstein, J.L.},
     12930  title = {Structural analysis of membrane protein complexes by single particle electron microscopy},
     12931  journal = {Methods},
     12932  year = {2007},
     12933  volume = {41},
     12934  pages = {409-416}
     12935}
     12936@article{Wang2007,
     12937  author = {Wang, J. and Li, Q. and Egerton, R.F.},
     12938  title = {Probing the electronic structure of ZnO nanowires by valence electron energy loss spectroscopy},
     12939  journal = {Micron},
     12940  year = {2007},
     12941  volume = {38},
     12942  pages = {346-353}
     12943}
     12944@article{Wang2004,
     12945  author = {Wang, Y.Y. and Kawasaki, M. and Bruley, J. and Gribelyuk, M. and Domenicucci, A. and Gaudiello, J.},
     12946  title = {Off-axis electron holography with a dual-lens imaging system andits usefulness in 2-D potential mapping of semiconductor devices},
     12947  journal = {Ultramicroscopy},
     12948  year = {2004},
     12949  volume = {101},
     12950  pages = {63-72}
     12951}
     12952@article{Wang2008,
     12953  author = {Wang, J. and Li, Q. and Ronning, C. and Stichtenoth, D. and Muller, S. and Tang, D.},
     12954  title = {Nanomaterial electronic structure investigation by valence electron energy loss spectroscopy - An example of doped ZnO nanowires},
     12955  journal = {Micron},
     12956  year = {2008},
     12957  volume = {39},
     12958  pages = {703-708}
     12959}
     12960@article{Okayama2005,
     12961  author = {Okayama, S. and Haraichi, S. and Matsuhata, H.},
     12962  title = {Reference sample for the evaluation of {SEM} image resolution at a high magnification - nanometer-scale {Au} particles on an {HOPG} substrate},
     12963  journal = {Journal of Electron Mircoscopy},
     12964  year = {2005},
     12965  volume = {54},
     12966  number = {4},
     12967  pages = {345-350}
     12968}
     12969@book{Slayter1992,
     12970  author = {Slayter,E.M. and Slayter, H.S.},
     12971  title = {Ligth and Electron Microscopy},
     12972  year = {1992},
     12973  publisher = {Cambridge University Press},
     12974  address = {Cambridge, United Kingdom}
     12975}
     12976@article{Ortalan2009,
     12977  author = {Ortalan, V. and Herra, M. and Morgan, D.G. and Browning, N.D.},
     12978  title = {Application of image processing to STEM tomography of low-contrast materials},
     12979  journal = {Ultramicroscopy},
     12980  year = {2009},
     12981  volume = {110},
     12982  pages = {67-81}
     12983}
     12984@article{Lazar2010,
     12985  author = {Lazar, S. and Shao, Y. and Gunawan, L. and Nechache, R. and Pignolet, A. and Botton, G.A.},
     12986  title = {Imaging, Core-Loss, and Low-Loss Electron-Energy-Loss Spectroscopy Mapping in Aberration-Corrected STEM},
     12987  journal = {Microscopy and Microanalysis},
     12988  year = {2010},
     12989  volume = {16},
     12990  pages = {1-9}
     12991}
     12992@article{Takaoka2006,
     12993  author = {Takaoka, A. and Hasegawa, T.},
     12994  title = {Observations of unstained biological specimens using a low-energy, high-resolution STEM},
     12995  journal = {Journal of Electron Microscopy},
     12996  year = {2006},
     12997  volume = {55},
     12998  pages = {157-163}
     12999}
     13000@article{Batson2002,
     13001  author = {Batson, P.E. and Dellby, N. and Krivanek, O.L.},
     13002  title = {Sub-{\AA}ngstrom resolution using aberration corrected electron optics},
     13003  journal = {Nature},
     13004  year = {2002},
     13005  volume = {418},
     13006  pages = {617-622}
     13007}
     13008@article{Batson2006,
     13009  author = {Batson, P.E.},
     13010  title = {Characterizing probe performance in the aberration corrected {STEM}},
     13011  journal = {Ultramicroscopy},
     13012  year = {2006},
     13013  volume = {106},
     13014  pages = {1104-1114}
     13015}
     13016@article{Wang2007a,
     13017  author = {Wang, J. and Zhou, M.J. and Hark, S.K. and Li, Q.},
     13018  title = {Local electronic structure and luminescence properties of Er doped ZnO nanowires},
     13019  journal = {Applied Physics Letters},
     13020  year = {2007},
     13021  volume = {89},
     13022  pages = {221917}
     13023}
     13024@article{Eisebit2004,
     13025  author = {Eisebit, S. and {J\"uning}, J. and Schlotter, W.F. and {L\"orgen}, M. and Hellwig, O. and Eberhardt, W. and {St\"ohr}, J.},
     13026  title = {Lensless imaging of magnetic nanostructures by {X-ray} spectro-holography},
     13027  journal = {Nature},
     13028  year = {2004},
     13029  volume = {432},
     13030  pages = {885-888}
     13031}
     13032@phdthesis{Tuggle1984,
     13033  author = {Tuggle, D.W.},
     13034  title = {Emission Characteristics and Electron optical properties of the ZrO/W point cathode},
     13035  year = {1984},
     13036  address = {Oregon State University},
     13037  school = {Oregon, USA}
     13038}
     13039@article{Cowley1959a,
     13040  author = {Cowley, J.M. and Moodie, A.F.},
     13041  title = {The Scattering of Electrons by Atoms and Crystals. {III.} {The} Single-Crytal Diffraction Patterns},
     13042  journal = {Acta Crystallography},
     13043  year = {1959},
     13044  volume = {12},
     13045  pages = {360-368}
     13046}
     13047@article{Harrach2009,
     13048  author = {Harrach, H.S. von},
     13049  title = {Development of the 300-kV Vacuum Generator STEM (1985-1996)},
     13050  journal = {Advances in Imaging and Electron Physics},
     13051  year = {2009},
     13052  volume = {159},
     13053  pages = {287-322}
     13054}
     13055@article{Plaisier2007,
     13056  author = {Plaisier, J.R. and Jiang, L. and Abrahams, J.P.},
     13057  title = {Cyclops: New modular software suite for cryo-EM},
     13058  journal = {Journal of Strcutural Biology},
     13059  year = {2007},
     13060  volume = {157},
     13061  pages = {19-27}
     13062}
     13063@article{Benthem2006,
     13064  author = {Benthem, K. van and Lupini, A.R. and Oxley, M.P. and Findlay, S.D. and Alleen, L.J. and Pennycook, S.J.},
     13065  title = {Three-dimensional {ADF} imaging of individual atoms by through-focal series scanning transmission electron microscopy},
     13066  journal = {Ultramicroscopy},
     13067  year = {2006},
     13068  volume = {106},
     13069  pages = {1062-1068}
     13070}
     13071@misc{Rieger2009,
     13072  author = {Zande, M. van der and Kok, C. and Rieger, B.},
     13073  title = {Method for determining the aberration coefficients of the aberration function of a particle-opticle lens},
     13074  year = {2009},
     13075  organization = {FEI Company},
     13076  howpublished = {EP1804272}
     13077}
     13078@article{Fujita2005,
     13079  author = {Fujita, S. and Shimoyama, H.},
     13080  title = {A new evaluation method of electron optical performance of high beam current probe forming systems},
     13081  journal = {Journal of Electron Mircoscopy},
     13082  year = {2005},
     13083  volume = {54},
     13084  number = {5},
     13085  pages = {413-427}
     13086}
     13087@article{Heel1997,
     13088  author = {Heel, M. van and Orlova, E.V. and Harauz, G. and Stark, H. and Dube, P. and Zemlin, F. and Schatz, M.},
     13089  title = {Angular reconstitution in three-dimensional electron microscopy: historical and theoretical aspects},
     13090  journal = {Scanning Microscopy},
     13091  year = {1997},
     13092  volume = {11},
     13093  pages = {195-210}
     13094}
     13095@article{Sawada2010,
     13096  author = {Sawada, H. and Sasaki, T. and Hosokawa, F. and Yuasa, S. and Terao, M. and Kawazoe, M. and Nakamichi, T. and Kaneyama, T. and Kondo. Y. and Kimoto, K. and Suenaga, K.},
     13097  title = {Higher-order aberration corrector for an image-forming system in a transmission electron microscope},
     13098  journal = {Ultramicroscopy},
     13099  year = {2010},
     13100  pages = {1-4}
     13101}
     13102@article{Rau1999,
     13103  author = {Rau, W.D. and Schwander, P. and Baumann, F.H. and Hoeppner, W. and Ourmazd, A.},
     13104  title = {Two-Dimensional Mapping of the Electrostatic Potential in Transistors by Electron Holography},
     13105  journal = {Physical Review Letters},
     13106  year = {1999},
     13107  volume = {82},
     13108  number = {12},
     13109  pages = {2614-2617}
     13110}
     13111@article{Kishita2009,
     13112  author = {Kishita, K. and Sakai, H. and Tanaka, H. and Saka, H. and Kuroda, K. and Sakamoto, M. and Watabe, A. and Kamnio, T.},
     13113  title = {Development of an analytical environmental TEM system and its application},
     13114  journal = {Journal of Electron Microscopy},
     13115  year = {2009},
     13116  volume = {58},
     13117  pages = {331-339}
     13118}
     13119@article{Bartle2008,
     13120  author = {Bartle, J. and Plies, E.},
     13121  title = {Energy width reduction using an electrostatic Omega-monochromator},
     13122  journal = {Physics Procedia},
     13123  year = {2008},
     13124  volume = {1},
     13125  pages = {479}
     13126}
     13127@article{Armstrong2007,
     13128  author = {Armstrong, M. R. and Boyden, K. and Browning, N.D. and Campbell, G.H. and Colvin, J.D. and DeHope, W.J. and Frank, A.M. and hartemann, F. and Kim, J.S. and King, W.E. and LaGrange, T.B. and Pyke, B.J. and Reed, B.W. and Shuttleswoth, M. and Stuart, B.C. and Torralava, B.R.},
     13129  title = {Practical considerations for high spatial and temporal resolution dynamic transmission electron microscopy},
     13130  journal = {Ultramicroscopy},
     13131  year = {2007},
     13132  volume = {107},
     13133  pages = {356-367}
     13134}
     13135@article{Lichte1993,
     13136  author = {Lichte, H.},
     13137  title = {Parameters for gih-resolution electron holography},
     13138  journal = {Ultramicroscopy},
     13139  year = {1993},
     13140  volume = {51},
     13141  pages = {15-20}
     13142}
     13143@article{Blom2006,
     13144  author = {Blom, D.A. and Allard, L.F. and Mishina, S. and O'Keefe, M.A.},
     13145  title = {Early Results from an Aberration-Corrected {JEOL 2200FS} {STEM/TEM} at {Oak} {Ridge} {National} {Laboratory}},
     13146  journal = {Microscopy and Microanalysis},
     13147  year = {2006},
     13148  volume = {12},
     13149  pages = {483-491}
     13150}
     13151@article{Zach2009,
     13152  author = {Zach2009},
     13153  title = {Chromatic correction: a revolution in electron microscopy?},
     13154  journal = {Philosophical Transactions of the Royal Society},
     13155  year = {2009},
     13156  volume = {367},
     13157  pages = {3699-3707}
     13158}
     13159@article{Arslan2005,
     13160  author = {Arslan, I. and Yates, T.J.V. and Browning, N.D. and Midgley, P.A.},
     13161  title = {Embedded nanostructures revealed in three dimensions},
     13162  journal = {Sciences},
     13163  year = {2005},
     13164  volume = {309},
     13165  pages = {2195-2198}
     13166}
     13167@article{Urban2008,
     13168  author = {Urban, K.},
     13169  title = {Studying Atomic Structures by Aberration-Corrected Transmission Electron Microscopy},
     13170  journal = {Science},
     13171  year = {2008},
     13172  volume = {321},
     13173  pages = {506-510}
     13174}
     13175@article{Christenson1988,
     13176  author = {Christenson, K.K. and Eades, J.A.},
     13177  title = {Skew thoughts on parallelism},
     13178  journal = {Ultramicroscopy},
     13179  year = {1988},
     13180  volume = {26},
     13181  pages = {113-132}
     13182}
     13183@article{Lupini2003,
     13184  author = {Lupini, A.R. and Pennycook, S.J.},
     13185  title = {Localization in Elastic and Inelastic Scattering},
     13186  journal = {Ultramicroscopy},
     13187  year = {2003},
     13188  volume = {96},
     13189  pages = {313-322}
     13190}
     13191@article{Loane1992,
     13192  author = {Loane, R.F. and Xu, P. and Slicox, J.},
     13193  title = {Incoherent imaging of zone axis crystals with {ADF STEM}},
     13194  journal = {Ultramicroscopy},
     13195  year = {1992},
     13196  volume = {40},
     13197  pages = {121-138}
     13198}
     13199@phdthesis{Lupini2001,
     13200  author = {Lupini, A.R.},
     13201  title = {Aberration correction in {STEM}},
     13202  year = {2001},
     13203  address = {Cambridge, United Kingdom},
     13204  school = {University of Cambridge},
     13205  note = {Copy Bernd Rieger}
     13206}
     13207@article{Deptuch2007,
     13208  author = {Deptuch, G. and Besson, A. and Rehak, P. and Szelezniak, M. and Wall, J. and Winter, M. and Zhu, Y.},
     13209  title = {Direct electron imaging in electron microscopy with monolithic active pixel sensors},
     13210  journal = {Ultramicroscopy},
     13211  year = {2007},
     13212  volume = {107},
     13213  pages = {674-684}
     13214}
     13215@article{Yamasaki2005,
     13216  author = {Yamasaki, J. and Sawada, H. and Tanaka, N.},
     13217  title = {First experiments of selected area nano-diffraction from semiconductor interfaces using a spherical aberration corrected {TEM}},
     13218  journal = {Journal of Electron Microscopy},
     13219  year = {2005},
     13220  volume = {54},
     13221  number = {2},
     13222  pages = {123-126}
     13223}
     13224@article{Rodenburg2006,
     13225  author = {Rodenburg, J.M. and Hurst, A.C. and Cullis, A.G.},
     13226  title = {Transmission microscopy without lenses for objects of unlimited size},
     13227  journal = {Ultramicroscopy},
     13228  year = {2006},
     13229  volume = {107},
     13230  pages = {227-231}
     13231}
     13232@article{Stewart2004,
     13233  author = {Stewart, A. and Grigorieff, N.},
     13234  title = {Noise bias in the refinement of structures deried from single particles},
     13235  journal = {Ultramicroscopy},
     13236  year = {2004},
     13237  volume = {102},
     13238  pages = {67-84}
     13239}
     13240@inproceedings{CheynetXXXX,
     13241  author = {Cheynet, M.C. and Tichelaar, F.R. and Lazar, S. and Jullian, S. and Pantel, R.},
     13242  title = {{VEELS} experiments using a monochromated {FEG-TEM}},
     13243  pages = {1-2}
     13244}
     13245@article{Fan1996,
     13246  author = {Fan, G.Y. and Young, S.J. and Deerinck, T. and Ellisman, M.H.},
     13247  title = {A new electron-optical mode for high contrast imaging and online stereo observation in {TEM}},
     13248  journal = {Journal of Microscopy},
     13249  year = {1996},
     13250  volume = {2},
     13251  number = {3},
     13252  pages = {137-146}
     13253}
     13254@inproceedings{SaorzanoXXXX,
     13255  author = {Sorzano, C.O.S. and {Fern\'andez}, J.J. and Marabini, R. and Herman, G.T. and Censor, Y. and Carazo, J.M.},
     13256  title = {Transfer function restoration in {3D} electron microscopy via iterative data refinement},
     13257  pages = {1-4}
     13258}
     13259@article{Miao2002,
     13260  author = {Miao, J. and Ohsuna, T. and Terasaki, O. and Hodgson, K.O. and O'Keefe, M.A.},
     13261  title = {Atomic Resolution Three-Dimensional Electron Diffraction Microscopy},
     13262  journal = {Physical Review Letters},
     13263  year = {2002},
     13264  volume = {89}
     13265}
     13266@article{Lentzen2004,
     13267  author = {Lentzen, M.},
     13268  title = {The tuning of a {Zernike} phase plate with defocus and variable spherical aberration and its use in {HRTEM} imaging},
     13269  journal = {Ultramicroscopy},
     13270  year = {2004},
     13271  volume = {99},
     13272  pages = {211-220}
     13273}
     13274@article{Lentzen2002,
     13275  author = {Lentzen, M. and Jahnen, B. and Jia, C.L. and Thust, A. and Tillmann, K. and Urban, K.},
     13276  title = {High-resolution imaging with an aberration-corrected transmission electron microscope},
     13277  journal = {Ultramicroscopy},
     13278  year = {2002},
     13279  volume = {92},
     13280  pages = {233-242}
     13281}
     13282@article{Cowley1957,
     13283  author = {Cowley, J.M. and Moodie, A.F.},
     13284  title = {The Scattering of Electrons by Atoms and Crystals. {I.} {A} New Theorectial Approach},
     13285  journal = {Acta Crystallography},
     13286  year = {1957},
     13287  volume = {10},
     13288  pages = {609-620}
     13289}
     13290@article{Sander2005,
     13291  author = {Sander, B. and Golas, M.M. and Stark, H.},
     13292  title = {Advantages of CCD detectors for de novo three-dimensional structure determination in single-particle electron microscopy},
     13293  journal = {Journal of Structural Biology},
     13294  year = {2005},
     13295  volume = {151},
     13296  pages = {92-105}
     13297}
     13298@article{Alloyeau2009,
     13299  author = {Alloyeau, D. and Freitag, B. and Dag, S. and Wang, L.W. and Kisielowski, C.},
     13300  title = {Atomic-resolution three-dimensional imaging of germanium self-interstitials near a surface: Aberration-corrected transmission electron microscopy},
     13301  journal = {Physical Review B},
     13302  year = {2009},
     13303  volume = {80},
     13304  pages = {014114}
     13305}
     13306@article{Fujiyoshi1998,
     13307  author = {Fujiyoshi, Y.},
     13308  title = {The structural study of membranse proteins by electron crystallography},
     13309  journal = {Adv. Biophysics},
     13310  year = {1998},
     13311  volume = {35},
     13312  pages = {25-80}
     13313}
     13314@article{Cowley1959,
     13315  author = {Cowley, J.M. and Moodie, A.F.},
     13316  title = {The Scattering of Electrons by Atoms and Crystals. {II.} {The} Effect of Finite Source Size},
     13317  journal = {Acta Crystallography},
     13318  year = {1959},
     13319  volume = {12},
     13320  pages = {353-360}
     13321}
     13322@article{Baba2001,
     13323  author = {Baba, N. Teryama, K. and Yoshimizu, T. and Ichise, N. and Tanaka, N.},
     13324  title = {An auto-tunning method for focusing and astigmatism correction in HAADF-STEM, based on the image contrast transfer function},
     13325  journal = {Journal of Electron Micrsocopy},
     13326  year = {2001},
     13327  volume = {50},
     13328  pages = {163-176}
     13329}
     13330@article{Miyashita2004,
     13331  author = {Miyashita, K. and Yamamoto, K. and Hirayama, T. and Tanji, T.},
     13332  title = {Direct observation of electrostatic microfields by four-electron-wave interference using two electron biprisms},
     13333  journal = {Journal of Electron Microscopy},
     13334  year = {2004},
     13335  volume = {53},
     13336  number = {6},
     13337  pages = {577-582}
     13338}
     13339@article{Barthel2008,
     13340  author = {Barthel, J. and Thust, A.},
     13341  title = {Quantification of the Information Limit of Transmission Electron Microscopes},
     13342  journal = {Physical Review Letters},
     13343  year = {2008},
     13344  volume = {101},
     13345  pages = {200801}
     13346}
     13347@inproceedings{Barthel2005,
     13348  author = {Barthel, J. and Thust, A.},
     13349  title = {Ultra-Precise Measurement of Optical Aberrations for Sub-\AA ngstrom {HRTEM}},
     13350  year = {2005},
     13351  booktitle = {{Dreil\"andertagung}, 28 August - 2 September, Davos, Zwitserland}
     13352}
     13353@article{Winkler2007,
     13354  author = {Winkler, H.},
     13355  title = {3D reconstruction and processing of volumetric data in cryo-electron tomography},
     13356  journal = {Journal of Strcutural Biology},
     13357  year = {2007},
     13358  volume = {157},
     13359  pages = {126-137}
     13360}
     13361@article{Kohl1985,
     13362  author = {Kohl, H. and Rose, H.},
     13363  title = {Theory of image formation by inelastically scattered electrons in the electron microscope},
     13364  journal = {Advances in Electronics and Electron Physics},
     13365  year = {1985},
     13366  volume = {65},
     13367  pages = {173-224}
     13368}
     13369@article{Henderson1992,
     13370  author = {Henderson, R.},
     13371  title = {Image contrast in high-resolution electron microscopy of biological macromlecules: {TMV} in ice},
     13372  journal = {Ultramicroscopy},
     13373  year = {1992},
     13374  volume = {46},
     13375  pages = {1-18}
     13376}
     13377@article{Einspahr2006,
     13378  author = {Einspahr, J.J. and Voyles, P.M.},
     13379  title = {Prospects for {3D}, nanometer-resolution imaging by confocal {STEM}},
     13380  journal = {Ultramicroscopy},
     13381  year = {2006},
     13382  volume = {106},
     13383  pages = {1041-1052}
     13384}
     13385@article{Bohm2000,
     13386  author = {{B\"ohm}, J. and Frangakis, A.S. and Hegerl, R. and Nickell, S. and Typke, D. and Baumeister, W.},
     13387  title = {Toward detecting and identifying macromolecules in a cellular context: Template matching applied to electron tomograms},
     13388  journal = {Biophysical Journal},
     13389  year = {2000},
     13390  volume = {97},
     13391  pages = {14245-14250}
     13392}
     13393@article{Zhou1996,
     13394  author = {Zhou, Z.H. and Hardt, S. and Wang, B. and Sherman, M.B. and Jakana, J. and Chiu, W.},
     13395  title = {{CTF} Determination of Images of Ice-Embedded Single Particles Using from Cryoelectron Micrographs to Subnanometer Resolution},
     13396  journal = {Journal of Strcutural Biology},
     13397  year = {1996},
     13398  volume = {116},
     13399  number = {1},
     13400  pages = {216-22}
     13401}
     13402@article{Mitome2009,
     13403  author = {Mitome, M. and Ishizuka, K. and Bando, Y.},
     13404  title = {Quantitativeness of phase measurement by transport of intensity equation},
     13405  journal = {Journal of electron microscopy},
     13406  year = {2009},
     13407  pages = {1-9}
     13408}
     13409@article{Schiske1956,
     13410  author = {Schiske, P.},
     13411  title = {Die untere Grenze des Farbfehlers magnetischer Linsen bei vorgeschriebener Maximalfeldstaerke},
     13412  journal = {Optik},
     13413  year = {1956},
     13414  volume = {13},
     13415  pages = {502-503}
     13416}
     13417@article{Edgcombe1999,
     13418  author = {Edgcombe, C.J. and Lupini, A.R. and Taylor, J.H.},
     13419  title = {Robust optimization for magnetic lens design},
     13420  journal = {Nuclear Instruments and Methods in Physics Research A},
     13421  year = {1999},
     13422  volume = {427},
     13423  pages = {306-309}
     13424}
     13425@article{Abajo2010,
     13426  author = {Abajo, F.J. Garcia de},
     13427  title = {Optical excitations in electron microscopy},
     13428  journal = {REVIEWS OF MODERN PHYSICS},
     13429  year = {2010},
     13430  volume = {82},
     13431  pages = {209-275}
     13432}
     13433@article{Chang2006,
     13434  author = {Chang, L.Y. and Kirkland, A.I. and Tichmarsh, J.M.},
     13435  title = {On the importance of fifth-order spherical aberration for a fully corrected electron microscope},
     13436  journal = {Ultramicroscopy},
     13437  year = {2006},
     13438  pages = {in press}
     13439}
     13440@article{Treacy2007,
     13441  author = {Treacy, M.M.J.},
     13442  title = {When structural noise is the signal: Speckle statistics in fluctuation electron microscopy},
     13443  journal = {Ultramicroscopy},
     13444  year = {2007},
     13445  volume = {107},
     13446  pages = {166-171}
     13447}
     13448@article{Yi2010,
     13449  author = {Yi, F. and Tiemeijer, P. and Voyles, P.M.},
     13450  title = {Flexible formation of coherent probes on an aberrationcorrected STEM with three condensers},
     13451  journal = {Journal of Electron Microscopy},
     13452  year = {2010},
     13453  pages = {1-7}
     13454}
     13455@article{Erni2005,
     13456  author = {Erni, R. and Browning, N.D. and Dia, Z.R. and Bradley, J.P.},
     13457  title = {Analysis of extraterrestrial particles using monochromated electron energy-loss spectroscopy},
     13458  journal = {Micron},
     13459  year = {2005},
     13460  volume = {36},
     13461  pages = {369-379}
     13462}
     13463@article{Erni2006,
     13464  author = {Erni, R. and Freitag, B. and Hartel, P. and {M\"uller}, H. and Tiemeijer, P. and Stam, M. van der and Stekelenburg, M. and Hubert, D. and Specht, P. and Garibay-Febles, V.},
     13465  title = {Atomic Scale Analysis of Planar Defects in Polycrystalline Diamond},
     13466  journal = {Microscopy and Microanalysis},
     13467  year = {2006},
     13468  volume = {12},
     13469  pages = {492-497}
     13470}
     13471@article{Erni2007,
     13472  author = {Erni, R. and Browning, N.D.},
     13473  title = {Quantification of the size-dependent energy gap of individual {CdSe} quantum dots by valence electron energy-loss spectroscopy},
     13474  journal = {Ultramicroscopy},
     13475  year = {2007},
     13476  volume = {107},
     13477  pages = {267-273}
     13478}
     13479@article{Peng2004,
     13480  author = {Peng, Y. and Nellist, P.D. and Pennycook, S.J.},
     13481  title = {{HAADF-STEM} Imaging With Sub-{\AA}ngstrom Probes, a full Bloch wave analysis},
     13482  journal = {Journal of Electron Microscopy},
     13483  year = {2004},
     13484  volume = {53},
     13485  pages = {257}
     13486}
     13487@article{Erni2008,
     13488  author = {Erni, R. and Lazar, S. and Browning, N.D.},
     13489  title = {Prospects for analyzing the electronic properties in nanoscale systems by {VEELS}},
     13490  journal = {Ultramicroscopy},
     13491  year = {2008},
     13492  volume = {108},
     13493  pages = {270-276}
     13494}
     13495@article{Erni2009,
     13496  author = {Erni, R. and Rossell, M.D. and Kisielowski, C. and Dahmen, U.},
     13497  title = {Atomic-resolution Imaging with sub-50-pm Electron Probe},
     13498  journal = {Physical Review Letters},
     13499  year = {2009},
     13500  volume = {102},
     13501  pages = {096101}
     13502}
     13503@article{Malac2007,
     13504  author = {Malac, M. and Beleggia, M. and Egerton, R. and Zhu, Y.},
     13505  title = {Imaging of radiation-sensitive samples in transmission electron microscopes equipped with Zernike phase plates},
     13506  journal = {Ultramicroscopy},
     13507  year = {2007},
     13508  volume = {108},
     13509  pages = {126-140}
     13510}
     13511@article{Bron1999,
     13512  author = {Bron, P. and {Lacap\'ere}, J.-J. and Breyton, C. and Mosser, G.},
     13513  title = {The 9 {\AA} projection structure of cytochrome $b_6f$ complex determined by electron crystallography},
     13514  journal = {Journal of Molecular Biology},
     13515  year = {1999},
     13516  volume = {287},
     13517  pages = {117-126}
     13518}
     13519@inproceedings{Kothleitner2003a,
     13520  author = {Kothleitner, G. and Mitterbauer, C. and Grogger, W. and Zandbergen, H. and Tiemeijer, P.C. and Bert Freitag, B. and Barfels, M. and Hofer, F.},
     13521  title = {First Applications of Electron Energy-Loss Spectroscopy with High Energy Resolution},
     13522  year = {2003},
     13523  volume = {738},
     13524  pages = {27-32},
     13525  booktitle = {Mat. Res. Soc. Symp. Proc.}
     13526}
     13527@article{Saxton1998,
     13528  author = {Saxton, W.O.},
     13529  title = {Quantitative comparision of images and transforms},
     13530  journal = {Journal of Microscopy},
     13531  year = {1998},
     13532  volume = {1-2},
     13533  pages = {52-60}
     13534}
     13535@article{Kothleitner1998,
     13536  author = {Kothleitner, G. and Hofer, F.},
     13537  title = {Optimization of the Signal to Noise Ratio in {EFTEM} Elemental Maps with Regard to Different Eonization Edge Types},
     13538  journal = {Micron},
     13539  year = {1998},
     13540  volume = {29},
     13541  number = {5},
     13542  pages = {349-357}
     13543}
     13544@article{Dwyer2007,
     13545  author = {Dwyer, C. and Kirkland, A.I. and Hartel, P. and {M\"uller}, H. and Haider, M.},
     13546  title = {Electron nanodiffraction using sharply focused parallel probes},
     13547  journal = {Applied Physics Letters},
     13548  year = {2007},
     13549  volume = {90},
     13550  pages = {151104}
     13551}
     13552@article{Dwyer2008,
     13553  author = {Dwyer, C. and Erni, R. and Etheridge, J.},
     13554  title = {Method to measure spatial coherence of subangstrom electron beams},
     13555  journal = {Applied Physics Letters},
     13556  year = {2008},
     13557  volume = {93},
     13558  pages = {021115}
     13559}
     13560@book{Reisner,
     13561  author = {Reisner, J.H.},
     13562  title = {An early history of the electron microsope in the united states},
     13563  year = {1989},
     13564  publisher = {Adavances in electronics and electron physics},
     13565  edition = {73},
     13566  note = {sold out, reprint 2006}
     13567}
     13568@article{Bottcher1995,
     13569  author = {{B\"ottcher}, B.},
     13570  title = {Electron cryo-micrsocopy of graphite in amorphous ice},
     13571  journal = {Ultramicroscopy},
     13572  year = {1995},
     13573  volume = {58},
     13574  pages = {417-424}
     13575}
     13576@article{Coene1992,
     13577  author = {Coene, W.M.J. and Jansen, G. and Beeck, M. op de and Dyck, D. van},
     13578  title = {Phase retrieval through focus variation for ultra-resolution in field-emission transmission electron microscopy},
     13579  journal = {Physical Review Letters},
     13580  year = {1992},
     13581  volume = {69},
     13582  number = {26},
     13583  pages = {3743-3749}
     13584}
     13585@article{Atsuzawa2009,
     13586  author = {Atusuzawa, K. and et al.},
     13587  title = {High-contrast imaging of plastic-embedded tissues by phase contrast electron microscopy},
     13588  journal = {Journal of Electron Microscopy},
     13589  year = {2009},
     13590  volume = {58},
     13591  pages = {35-45}
     13592}
     13593@article{Bailey2004,
     13594  author = {Bailey, B. and Agard, D.A. and Sedat, J.W. and Barfels, M. and Chao, H. and Mooney, P.E.},
     13595  title = {Performance Evaluation of a Transmission Scintillator-Based Lens-Coupled 4K CCD Camera for Use in Low-Dose Electron Cryo-Microscopy},
     13596  journal = {Mircoscopy Mircoanal},
     13597  year = {2004},
     13598  volume = {10},
     13599  pages = {S2}
     13600}
     13601@article{Muto2006,
     13602  author = {Muto, S. and Pueter, R.C. and Tatsumi, K.},
     13603  title = {Spectral restoration and energy resolution improvement of electron energy-loss spectra by Pixon reconstruction: {I. Principle} and test examples},
     13604  journal = {Journal of Electron Microscopy},
     13605  year = {2006},
     13606  volume = {55},
     13607  number = {4},
     13608  pages = {215-223}
     13609}
     13610@article{Alem2009,
     13611  author = {Alem, N. and Erni, R. and Kisielowski, C. and Rosell, M.D. and Gannett, W. and Zettl, A.},
     13612  title = {Atomically thin hexagonal boron nitride probed by ultrahigh-resolution transmission electron microscopy},
     13613  journal = {Physics Review B},
     13614  year = {2009},
     13615  volume = {80},
     13616  pages = {155425}
     13617}
     13618@article{Meyer2008a,
     13619  author = {Meyer, J.C. and Kisielowski, C. and Erni, R. and Rossell, M.D. and Crommie, M.F. and Zettl, A.},
     13620  title = {Direct Imaging of Lattice Atoms and Topological Defects in Graphene Membranes},
     13621  journal = {Nano Letters},
     13622  year = {2008},
     13623  volume = {8},
     13624  pages = {3582-3586}
     13625}
     13626@article{Ishizuka1980,
     13627  author = {Ishizuka, K.},
     13628  title = {Contrast transfer of crystal images in {TEM}},
     13629  journal = {Ultramicroscopy},
     13630  year = {1980},
     13631  volume = {5},
     13632  pages = {55-65}
     13633}
     13634@article{Jia2008,
     13635  author = {Jia, C.-L. and Mi, S.-B. and Urban, K. and Verjoiu, I. and Alexe, M. and Hesse, D.},
     13636  title = {Atomic-scale study of electric dipoles near charged and uncharged domain walls in ferroelectric films},
     13637  journal = {Nature},
     13638  year = {2008},
     13639  volume = {7},
     13640  pages = {57-61}
     13641}
     13642@article{Gonen2004,
     13643  author = {Gonen, T. and Sliz, P. and Kistler, J. and Cheng, Y. and Walz, T.},
     13644  title = {Aquaporin-O membrane junctions reveal the structure of a closed water pore},
     13645  journal = {Nature},
     13646  year = {2004},
     13647  volume = {429},
     13648  pages = {193-196}
     13649}
     13650@article{Jia2004,
     13651  author = {Jia, C.-L. and Lentzen, M. and Urban, K.},
     13652  title = {High-Resolution Transmission Electron Microscopy Using Negative Spherical Aberration},
     13653  journal = {Microscopy and Mircoanalysis},
     13654  year = {2004},
     13655  volume = {10},
     13656  pages = {174-184}
     13657}
     13658@article{Ishitani2002a,
     13659  author = {Ishitani, T. and Sato, M.},
     13660  title = {A Method for Personal Expertise-Independent Evaluation of Image Resolution in Scanning Electron Microscopy},
     13661  journal = {Scanning},
     13662  year = {2003},
     13663  volume = {24},
     13664  number = {4},
     13665  pages = {191-203}
     13666}
     13667@article{Oho2001,
     13668  author = {Oho, E. and Toyomura, K.},
     13669  title = {Strategies for Optimum Use of Superposition Diffractogram in Scanning Electron Microscopy},
     13670  journal = {Scanning},
     13671  year = {2001},
     13672  volume = {23},
     13673  number = {5},
     13674  pages = {351-356}
     13675}
     13676@article{Kazemian2006,
     13677  author = {Kazemian, P. and Mentink, S.A.M. and Rodenburg, C. and Humphreys, C.J.},
     13678  title = {Quantitative secondary electron energy filtering in a scanning electron microscope and its applications},
     13679  journal = {Ultramicroscopy},
     13680  year = {2006},
     13681  volume = {107},
     13682  pages = {140-150}
     13683}
     13684@article{Rau1996,
     13685  author = {Rau, E.I. and Robinson, V.N.E.},
     13686  title = {An Annular Toroidal Backscattered Electron Energy Analyser for Use in Scanning Electron Microscopy},
     13687  journal = {Scanning},
     13688  year = {1996},
     13689  volume = {18},
     13690  pages = {556-561}
     13691}
     13692@article{Bronsgeest2007,
     13693  author = {Bronsgeest, M.S. and barth, J.E. and Schwind, G.A. and Swanson, L.W. and Kruit, P.},
     13694  title = {Extracting the Boersch effect contribution from experimental energy spread measurements for Schottky electron emitters},
     13695  journal = {Journal of Vaccuum Science Technology B},
     13696  year = {2007},
     13697  volume = {25},
     13698  number = {6},
     13699  pages = {2049-254}
     13700}
     13701@article{Nellist1999,
     13702  author = {Nellist, P.D. and Pennycook, S.J.},
     13703  title = {Incoherent imaging using dynamically scattered coherent electrons},
     13704  journal = {Ultramicroscopy},
     13705  year = {1999},
     13706  volume = {78},
     13707  pages = {111-124}
     13708}
     13709@article{Nellist1998,
     13710  author = {Nellist, P.D. and Pennycook, S.J.},
     13711  title = {Subangstrom Resolution by Underfocused Incoherent Transmission Electron Microscopy},
     13712  journal = {Physical Review Letters},
     13713  year = {1998},
     13714  volume = {81},
     13715  number = {19},
     13716  pages = {4156-4159}
     13717}
     13718@article{Yonekura2006,
     13719  author = {Yonekura, K. and Braunfeld, M.B. and Mari-Yonekura, S. and Agard, D.A.},
     13720  title = {Electron energy filtering significantly improves amplitude contrast of frozen-hydrated protein at 300 kV},
     13721  journal = {Journal of Structural Biology},
     13722  year = {2006},
     13723  volume = {156},
     13724  pages = {524-536}
     13725}
     13726@article{Park2009,
     13727  author = {Park, H.S. and Baskin, J.S. and Barwick, B. and Kwon, O.H. and Zewail, A.H.},
     13728  title = {4D ultra fast electron microscopy: Imaging of atomic motions, acoustic resonances, and moire fringe dynamics},
     13729  journal = {Ultramicroscopy},
     13730  year = {2009},
     13731  volume = {110},
     13732  pages = {7-19}
     13733}
     13734@article{Bahn2008,
     13735  author = {Bahn, A.S. and J.E. and Schwind, G.A. and Swanson},
     13736  title = {Range of validity of field emission equations},
     13737  journal = {Journal of Vaccuum Science Technology B},
     13738  year = {2008},
     13739  volume = {26},
     13740  number = {6},
     13741  pages = {2080-2084}
     13742}
     13743@article{Beck2004,
     13744  author = {Beck, M. and {F\"orster}, F. and Ecke, M. and Plitzko, J.M. and Melchior, F. and Gerisch, G. and Baumeister, W. and Medalia, O.},
     13745  title = {Nuclear Pore Complex Structure and Dynamics Revealed by Cryoelectron Tomography},
     13746  journal = {Science},
     13747  year = {2004},
     13748  volume = {306},
     13749  pages = {1387-1390}
     13750}
     13751@article{Ban2000,
     13752  author = {Ban, N. and Nissen, P. and Hansen, J. and Moore, P.B. and Steitz, T.A.},
     13753  title = {The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 {\AA} Resolution},
     13754  journal = {Science},
     13755  year = {2000},
     13756  volume = {289},
     13757  pages = {905-920}
     13758}
     13759@article{Havelka1993,
     13760  author = {Havelka, W. A. and Henderson, R. and Heymann, J.A.W. and Oesterhelt, D.},
     13761  title = {Projection structure of Halorhodopsin from Halobacterium halobium at 6 {\AA} resolution obtrained by electron cryo-microscopy},
     13762  journal = {Journal of Molecular Biology},
     13763  year = {1993},
     13764  volume = {234},
     13765  pages = {837-846}
     13766}
     13767@article{Havelka1995,
     13768  author = {Havelka, W.A. and Henderson, R. and Oesterhelt, D.},
     13769  title = {Three-dimensional structure of halorhodopsin at 7 {\AA} resolution},
     13770  journal = {Journal of Molecular Biology},
     13771  year = {1995},
     13772  volume = {247},
     13773  pages = {726-738}
     13774}
     13775@article{Ruprecht2001,
     13776  author = {Ruprecht, J. and Nield, J.},
     13777  title = {Determining the structure of biological macromolecules by transmission electron microscopy, single particle analysis and 3D reconstruction},
     13778  journal = {Biophysics and Molecular Biology},
     13779  year = {2001},
     13780  volume = {75},
     13781  pages = {121-164}
     13782}
     13783@article{Pennycook2000,
     13784  author = {Pennycook, S.J. and Rafferty, B. and Nellist, P.D.},
     13785  title = {Z-Contrast Imaging in an Aberration-Corrected Scanning Transmission Electron Microscope},
     13786  journal = {Microscopy and Microanalysis},
     13787  year = {2000},
     13788  volume = {6},
     13789  pages = {343}
     13790}
     13791@inproceedings{Pennycook2003,
     13792  author = {Pennycook, S.J. and Lupini, A.R. and Varela, M. and Borisevich, A. and Peng, Y. and Nellist, P.D.},
     13793  title = {Quantum Mechanical Resolution Limits to Imaging and Spectroscopy in the Transmission Electron Microscope},
     13794  year = {2003},
     13795  pages = {126},
     13796  editor = {McGuire, J.},
     13797  publisher = {Old Dominion Universtity},
     13798  booktitle = {From the Atomic to the Nano Scale}
     13799}
     13800@article{Pennycook2009,
     13801  author = {Zach2009},
     13802  title = {Aberration corrected scanning transmission electron microscopy: from atomic imaging and analysis to solving energy problems},
     13803  journal = {Philosophical Transactions of the Royal Society},
     13804  year = {2009},
     13805  volume = {367},
     13806  pages = {3709-3733}
     13807}
     13808@article{Pennycook1990,
     13809  author = {Pennycook, S.J. and Jesson, D.E.},
     13810  title = {High-Resolution Incoherent Imaging of Crystals},
     13811  journal = {Physical Review Letters},
     13812  year = {1990},
     13813  volume = {64},
     13814  pages = {938}
     13815}
     13816@article{Muto2006a,
     13817  author = {Muto, S. and Tatsumi, K. and Puetter, R.C. and Yosida, T. and Yamamoto, Y. and Sasano, Y.},
     13818  title = {Spectral restoration and energy resolution improvement of electron energy-loss spectra by Pixon reconstruction: {II. Application} to practical {ELNES} analysis of low {SNR}},
     13819  journal = {Journal of Electron Microscopy},
     13820  year = {2006},
     13821  volume = {55},
     13822  number = {4},
     13823  pages = {225-230}
     13824}
     13825@article{Kujawa1990,
     13826  author = {Kujawa, S. and Krahl, D. and Niedrig, H. and Zeitler, E.},
     13827  title = {Second-rank aberrations of a magnetic imaging energy filter: measurement and correction},
     13828  journal = {Optik},
     13829  year = {1990},
     13830  volume = {86},
     13831  pages = {39-46}
     13832}
     13833@article{Kujawa1992,
     13834  author = {Kujawa, S. and Krahl, D.},
     13835  title = {Performance of a low-noise CCD camera adapted to a transmission electron microscope},
     13836  journal = {Ultramicrosopy},
     13837  year = {1992},
     13838  volume = {46},
     13839  pages = {395-403}
     13840}
     13841@article{Lugg2010,
     13842  author = {Lugg, N.R. and Freitag, B. and Findlay, S.D. and Allen, L.J..},
     13843  title = {Energy-filtered transmission electron microscopy based on inner-shell ionization},
     13844  journal = {Ultramicroscopy},
     13845  year = {2010}
     13846}
     13847@article{Avoort2005,
     13848  author = {Avoort, C. van der and Braat, J.J.M. and Dirksen, P. and Janssen, A.J.E.M.},
     13849  title = {Aberration retrieval from the intensity point-spread function in the focal region using the extended {Nijboer-Zernike} approach},
     13850  journal = {Journal of Modern Optics},
     13851  year = {2005},
     13852  volume = {52},
     13853  number = {12},
     13854  pages = {1695-1728}
     13855}
     13856@article{Eastham2009,
     13857  author = {Eastham, D.A. and Edmondson, P. and Greene, S. and Donnelly, S. and Olsson, E. and Svensson, K. and Bleloch, A.},
     13858  title = {A design for a subminiature, low energy scanning electron microscope with atomic resolution},
     13859  journal = {Journal of Appplied Physics},
     13860  year = {2009},
     13861  volume = {105},
     13862  pages = {014702}
     13863}
     13864@article{Schonhense2002,
     13865  author = {{Sch\"onhense}, G. and Spiecker, H.},
     13866  title = {Correction of chromatic and spherical aberration in electron microscopy utilizing the time structure of pulsed excitation sources},
     13867  journal = {Journal of Vacuum Science Technology B},
     13868  year = {2002},
     13869  volume = {20},
     13870  number = {6},
     13871  pages = {2526-2534}
     13872}
     13873@article{Sawada2005,
     13874  author = {Sawada, H. and Tomita, T. and Naruse, M. and Honda, T. and Hambridge, P. and Hartel, P. and Haider, M. and Hetherington, C. and Doole, R. and Kirkland, A. and Hutchison, J. and Titchmarsh, J. and Cockayne, D.},
     13875  title = {Experimental evaluation of a spherical aberration-corrected {TEM} and {STEM}},
     13876  journal = {Journal of Electron Microscopy},
     13877  year = {2005},
     13878  volume = {54},
     13879  number = {2},
     13880  pages = {119-121}
     13881}
     13882@article{Hartel1996,
     13883  author = {Hartel, P. and Rose, H. and Dinges, C.},
     13884  title = {Conditions and reasons for incoherent imaging in {STEM}},
     13885  journal = {Ultramicroscopy},
     13886  year = {1996},
     13887  volume = {63},
     13888  pages = {93-114}
     13889}
     13890@article{Egelman2007,
     13891  author = {Egelman, E.H.},
     13892  title = {The iterative helical real space reconstruction method: Surmounting the problems posed by real polymers},
     13893  journal = {Journal of Strcutural Biology},
     13894  year = {2007},
     13895  volume = {157},
     13896  pages = {83-94}
     13897}
     13898@article{Sawada2009,
     13899  author = {Sawada, H. and Sasaki, T. and Hosokawa, F. and Yuasa, S. and Terao, M. and Kawazoe, M .and Nakamichi, T. and Kaneyama, T. and Kondo, Y. and Kimoto, K. and Suenada, K.},
     13900  title = {Correction of higher order geometrical aberration by triple 3-fold astigmatism field},
     13901  journal = {Journal of electron microscopy},
     13902  year = {2009},
     13903  pages = {1-7}
     13904}
     13905@article{Sawada2008,
     13906  author = {Sawada, H. and Sannomiya, T. and Hosokawa, F. and Nakamichi, T. and Kaneyama, T. and Tomita, T. and Kondo, Y. and Tanaka, T. and Oshima, Y. and Tanishiro, Y. and Takayanagi, K.},
     13907  title = {Measurement method of aberration from Ronchigram by autocorrelation function},
     13908  journal = {Ultramicroscopy},
     13909  year = {2008},
     13910  volume = {108},
     13911  pages = {1467-1475}
     13912}
     13913@article{Erni2005a,
     13914  author = {Erni, R. and Browning, N.D.},
     13915  title = {Valence electron energy-loss spectroscopy in monochromated scanning transmission electron microscopy},
     13916  journal = {Ultramicroscopy},
     13917  year = {2005},
     13918  volume = {104},
     13919  pages = {176-192}
     13920}
     13921@article{Gilbert1972,
     13922  author = {Gilbert, P.},
     13923  title = {Iterative Methods for the three-dimensional reconstruction of a object from projections},
     13924  journal = {Journal of Theoretical Biology},
     13925  year = {1972},
     13926  volume = {36},
     13927  number = {1},
     13928  pages = {105-117}
     13929}
     13930@article{Shiue2009,
     13931  author = {Shiue, J. and et al.},
     13932  title = {Phase TEM for biological imaging utilizing a Boersch electrostatic phase plate: theory and practice},
     13933  journal = {Journal of Electron Microscopy},
     13934  year = {2009},
     13935  volume = {58},
     13936  pages = {135-145}
     13937}
     13938@techreport{Zande2005,
     13939  author = {Zande, M.J. van der and Kok, C.},
     13940  title = {Local magnification in Ronchigrams (Aberration retrieval in {STEM})},
     13941  year = {2005},
     13942  number = {PR-TN-2005/00002},
     13943  address = { Eindhoven, The Netherlands},
     13944  institution = {Philips Research},
     13945  type = {Technical Note}
     13946}
     13947@article{Rafferty1998,
     13948  author = {Rafferty, B. and Brown, L.M.},
     13949  title = {Direct and indirect transitions in the region of the band gap using electron-energy-loss spectroscopy},
     13950  journal = {Physical Review B},
     13951  year = {1998},
     13952  volume = {58},
     13953  number = {16},
     13954  pages = {10326-10337}
     13955}
     13956@article{Lichte1986,
     13957  author = {Lichte, H.},
     13958  title = {Electron Holography approaching atomic resolution},
     13959  journal = {Ultramicroscopy},
     13960  year = {1986},
     13961  volume = {20},
     13962  pages = {293-304}
     13963}
     13964@article{Bosman2009,
     13965  author = {Bosman, M. and Tang, L.J. and Ye, J.D. and Zhang, Y. and Keast, V.J.},
     13966  title = {Nanoscale band gap spectroscopy on ZnO and GaN-based compounds with a monochromated electron microscope},
     13967  journal = {Applied Physics Letters},
     13968  year = {2009},
     13969  volume = {95},
     13970  pages = {101110}
     13971}
     13972@article{Conway1999,
     13973  author = {Conway, J.F. and Steven, A.C.},
     13974  title = {Methods for Reconstructing Density Maps of Single Particles from Cryoelectron Micrographs to Subnanometer Resolution},
     13975  journal = {Journal of Strcutural Biology},
     13976  year = {1999},
     13977  volume = {128},
     13978  pages = {106-118}
     13979}
     13980@article{Muller2008a,
     13981  author = {Muller, H. and Uhlemann, S. and Hartel, P. and Haider, M.},
     13982  title = {Aberration-corrected optics: from an idea to a device},
     13983  journal = {Physcis Procedia},
     13984  year = {2008},
     13985  volume = {1},
     13986  pages = {167-178}
     13987}
     13988@article{Chiu1977,
     13989  author = {Chiu, W. and Glaeser, R.M.},
     13990  title = {Factors affecting high resolution fixed-beam transmission electron microscopy},
     13991  journal = {Ultramicroscopy},
     13992  year = {1977},
     13993  volume = {2},
     13994  pages = {207-217}
     13995}
     13996@article{HitatchiSEM2007,
     13997  author = {Ngo, V. van and Hernandez, M. and Roth, B. and Joy, D.C.},
     13998  title = {{STEM} Imaging of Lattic Fringes and beyond in a {UHR} In-Lens Field-Emission {SEM}},
     13999  journal = {Microscopy Today},
     14000  year = {2007},
     14001  number = {3},
     14002  pages = {12-16}
     14003}
     14004@article{Schatz1997,
     14005  author = {Schatz, M. and Orlova, E.V. and Harauz, G. and Stark, H. and Dube, P. and Zemlin, F. and Heel, M. van},
     14006  title = {Angular reconstitution in three-dimensional electron microscopy: practical and technical aspects},
     14007  journal = {Scanning Microscopy},
     14008  year = {1997},
     14009  volume = {11},
     14010  pages = {179-193}
     14011}
     14012@article{Isabell2009,
     14013  author = {Isabell, T. and Brink, J. and Kawasaki, M. and Armbruster, B. and Ishikawa, I. and Okunishi, E. and Sawada, H. and Okura, Y. and Yamazaki, K. and Ishikawa, T. and Kawazu, M. and Hori, M. and Terao, M. and Kanno, M. and Tanba, S. and Kondo, Y.},
     14014  title = {Development of a 200kV Atomic resolution Analytical Electron Microscope},
     14015  journal = {Microscopy Today},
     14016  year = {2009},
     14017  pages = {8-10}
     14018}
     14019@article{Penczek2002a,
     14020  author = {Penczek, P.A.},
     14021  title = {Resolution Measures in Single Particle Analysis},
     14022  year = {2002}
     14023}
     14024@article{Majorovits2007,
     14025  author = {Majorovits, E. and Barton, B. and {Schulthei\ss}, K. and Perez-Willard, F. and Gerthsen, D. and {Schr\"oder}, R.R.},
     14026  title = {Optimizing phase contrast in transmission electron microscopy with an electrostatic (Boersch) phase plate},
     14027  journal = {Ultramicroscopy},
     14028  year = {2007},
     14029  volume = {107},
     14030  pages = {213-226}
     14031}
     14032@article{Baumeister2004,
     14033  author = {Baumeister, W.},
     14034  title = {Mapping molecular landscapes inside cells},
     14035  journal = {Biological Chemistry},
     14036  year = {2004},
     14037  volume = {385},
     14038  pages = {865-872}
     14039}
     14040@article{Harrach1995,
     14041  author = {Harrach, H.S. von},
     14042  title = {Instrumental factors in high-resolution {FEG STEM}},
     14043  journal = {Ultramicroscopy},
     14044  year = {1995},
     14045  volume = {58},
     14046  pages = {1-5}
     14047}
     14048@article{Baxter2007,
     14049  author = {Baxter, W.T. and Leith, A. and Frank, J.},
     14050  title = {SPIRE: The SPIDER Reconstruction Engine},
     14051  journal = {Journal of Strcutural Biology},
     14052  year = {2007},
     14053  volume = {157},
     14054  pages = {56-63}
     14055}
     14056@article{Rafferty2001,
     14057  author = {Rafferty, B. and Nellist, P.D. and Pennycook, S.J.},
     14058  title = {On the origin of transverse incoherence in {Z-}constrast {STEM}},
     14059  journal = {Journal of Electron Microscopy},
     14060  year = {2001},
     14061  volume = {50},
     14062  number = {3},
     14063  pages = {227-233}
     14064}
     14065@article{Drummy2004,
     14066  author = {Drummy, L.F. and Yang, J. and Martin, D.C.},
     14067  title = {Low-voltage electron microscopy of polymer and organic molecular thin films},
     14068  journal = {Ultramicroscopy},
     14069  year = {2004},
     14070  volume = {99},
     14071  pages = {247-256}
     14072}
     14073@article{Jiang2006,
     14074  author = {Jiang, N. and Jiang, B. and Erni, R. and Browning, N.D. and Spence, J.C.H.},
     14075  title = {Experimental and theoretical improvements on understanding of the {O K-edge} of {TeO}$_2$},
     14076  journal = {Ultramicroscopy},
     14077  year = {2006},
     14078  volume = {106},
     14079  pages = {123-129}
     14080}
     14081@article{Jiang2005,
     14082  author = {Jiang, W. and Baker, M.L. and Wu, Q. and Bajaj, C. and Chiu, W.},
     14083  title = {Applications of a bilateral denoising filter in biological electron microscopy},
     14084  journal = {Journal of Structural Biology},
     14085  year = {2003},
     14086  volume = {144},
     14087  pages = {114-122}
     14088}
     14089@article{Jiang2008,
     14090  author = {Jiang, X. and chen, R. and Bent, S.F.},
     14091  title = {Spatial control over atomic layer deposition using microcontact-printed resists},
     14092  journal = {Surface & Coatings Technology},
     14093  year = {2008},
     14094  volume = {201},
     14095  pages = {8799-8807}
     14096}
     14097@article{Chen2007,
     14098  author = {Chen, J.Z. and Sachse, C. and Xu, C. and Mielke, T. and Spahn, C.M.T. and Grigorieff, N.},
     14099  title = {A dose-rate effect in single-particle electron microscopy},
     14100  journal = {Journal of Structural Biology},
     14101  year = {2007},
     14102  volume = {161},
     14103  pages = {92-100}
     14104}
     14105@article{Alloyeau2010,
     14106  author = {Alloyeau, D. and Hsieh, W.K. and Anderson, E.H. and Hilken, L. and Benner, G. and Meng, X. and Chen, F.R. and Kisielowski, C.},
     14107  title = {Imaging of soft and hard materials using a Boersch phase plate in a transmission electron microscope},
     14108  journal = {Ultramicroscopy},
     14109  year = {2010},
     14110  volume = {110},
     14111  pages = {563-570}
     14112}
     14113@article{Heel2005,
     14114  author = {Heel, M. van and Schatz, M.},
     14115  title = {Fourier shell correlation threshold criteria},
     14116  journal = {Journal of Structural Biology},
     14117  year = {2005},
     14118  volume = {151},
     14119  pages = {250-262}
     14120}
     14121@article{Heel2000,
     14122  author = {Heel, M. van and Gowen, B. and Matadeen, R. and Orlova, E.V. and Finn, R. and Pape, T. and Cohen, D. and Stark, H. and Schmidt, R. and Schatz, M. and Patwardhan, A.},
     14123  title = {Single-particle electron cryo-microscopy: towards atomic resolution},
     14124  journal = {Quarterly Review of Biophysics},
     14125  year = {2000},
     14126  volume = {33},
     14127  number = {4},
     14128  pages = {307-369}
     14129}
     14130@article{Walther2006a,
     14131  author = {Walther, T. and Stegmann, H.},
     14132  title = {Preliminary Results from the First Monochromated and Aberration Corrected 200-kV Field-Emission Scanning Transmission Electron Microscope},
     14133  journal = {Microscopy and Microanalysis},
     14134  year = {2006},
     14135  volume = {12},
     14136  pages = {498-505}
     14137}
     14138@article{Yamaguchi2009,
     14139  author = {Yamaguchi, M. and Okada, H. and Namiki, Y.},
     14140  title = {Smart specimen preparation for freeze substitution and serial ultrathin sectioning of yeast cells},
     14141  journal = {Journal of Electron Microscopy},
     14142  year = {2009},
     14143  volume = {58},
     14144  pages = {261-266}
     14145}
     14146@article{Sparrow1916,
     14147  author = {Sparrow, C.M.},
     14148  title = {On spectroscopic resolving power},
     14149  journal = {Astrophysical Journal},
     14150  year = {1916},
     14151  volume = {44},
     14152  pages = {76-86}
     14153}
     14154@article{Rose1984,
     14155  author = {Rose, H.},
     14156  title = {Information transfer in transmission electron microscopy},
     14157  journal = {Ultramicroscopy},
     14158  year = {1984},
     14159  volume = {15},
     14160  pages = {173-192}
     14161}
     14162@article{Martinez2008,
     14163  author = {Martinez, G. and Tsuno, K.},
     14164  title = {The use of multipole fields for aberration correctionin pi/2 Wien filters},
     14165  journal = {Physics Procedia},
     14166  year = {2008},
     14167  volume = {1},
     14168  pages = {193-198}
     14169}
     14170@article{Driel2009,
     14171  author = {Driel, L.F. van and Valentijn, J.A. and Valentijn, K.M. and Koning, R.I. and Koster, A.J.},
     14172  title = {Tools for correlative cryo-fluorescence microscopy and cryo-electron tomography applied to whole mitochondria in human endothelial cells},
     14173  journal = {European Journal of Cell Biology},
     14174  year = {2009},
     14175  volume = {88},
     14176  pages = {669-684}
     14177}
     14178@article{Pomfret2007,
     14179  author = {Pomfret, A.J. and Rice, W.J. and Stokes, D.L.},
     14180  title = {Application of the iterative helical real-space reconstruction method to large membranous tubular crystals of P-type ATPases},
     14181  journal = {Journal of Strcutural Biology},
     14182  year = {2007},
     14183  volume = {157},
     14184  pages = {106-116}
     14185}
     14186@article{Beek1996,
     14187  author = {Beek, M. op de and Dyck, D. van and Coene, W.},
     14188  title = {Wave function reconstruction in {HRTEM}: the parabola method},
     14189  journal = {Ultramicroscopy},
     14190  year = {1996},
     14191  volume = {64},
     14192  pages = {167-183}
     14193}
     14194@article{Lichte2008,
     14195  author = {Lichte, H.},
     14196  title = {Performance limits of electron holography},
     14197  journal = {Ultramicroscopy},
     14198  year = {2007},
     14199  volume = {108},
     14200  pages = {256-262}
     14201}
     14202@article{Hue2005,
     14203  author = {Hue, F. and Johnson, C.L. and Lartigue-Korinek, S. and Wang, G. and Buseck, P.R. and Hytch, M.J.},
     14204  title = {Calibration of Projector Lens Distortions for Quantitative High-Resolution TEM},
     14205  journal = {Microsc Microanal},
     14206  year = {2005},
     14207  volume = {11 (Suppl 2)},
     14208  pages = {552-553}
     14209}
     14210@article{Kaiser2002,
     14211  author = {Kaise, U. and Muller, D.A. and Grazul, J.L. and Chuvilin, A. and Kawasaki, M.},
     14212  title = {Direct observation of defect-mediated cluster nucleation},
     14213  journal = {Nature materials},
     14214  year = {2002},
     14215  volume = {1},
     14216  pages = {102-106}
     14217}
     14218@article{Turchanin2009,
     14219  author = {Turchanin, A. and Beyer, A. and Nottbohm, T. and Zhang, X. and Stosch, R. and and Sologubenko, A.S. and Mayer, J. and Hinze, P. and Weimann, T. and {G\"olzh\"auser}},
     14220  title = {One Nanometer Thin Carbon Nanosheets with Tunable Conductivity and Stiffness},
     14221  journal = {Advanced Materials},
     14222  year = {2009},
     14223  volume = {21},
     14224  pages = {1233-1237}
     14225}
     14226@article{Mkhoyan2006,
     14227  author = {Mkhoyan, K.A. and Batson, P.E. and Cha, J. and Schaff, W.J. and Silcox, J.},
     14228  title = {Direct Determination of Local Lattice Polarity in Crystals},
     14229  journal = {Science},
     14230  year = {2006},
     14231  volume = {312},
     14232  pages = {1354}
     14233}
     14234@inproceedings{Sawada2006,
     14235  author = {Sawada, H. and Sannomiya, T. and Hosokawa, F. and Kaneyama, T. and Kondo, Y. and Tanishiro, Y. and Takayanagi, K.},
     14236  title = {Method to Measure Aberrations from Ronchigram by Auto-Correlation Function},
     14237  journal = {Journal of Electron Microscopy},
     14238  volume = {IMC 16},
     14239  address = {Sapporo, Japan}
     14240}
     14241@article{Allen2003,
     14242  author = {Allen, L.J. and Findlay, S.D. and Lupini, A.R. and Oxley, M.P. and Pennycook, S.J.},
     14243  title = {Atomic Resolution Electron Energy Loss Spectroscopy Imaging in Aberration Corrected Scanning Transmission Electron Microscopy},
     14244  journal = {Physical Review Letters},
     14245  year = {2003},
     14246  volume = {91},
     14247  pages = {105503}
     14248}
     14249@article{Erni2010,
     14250  author = {Erni, R. and Rossell, M.D. and Nakashima, P.N.H.},
     14251  title = {Optimizationofexit-planewavesrestoredfromHRTEMthrough-focalseries},
     14252  journal = {Ultramicroscopy},
     14253  year = {2010},
     14254  volume = {110},
     14255  pages = {151-161}
     14256}
     14257@article{Meyer1998,
     14258  author = {Meyer, R.R. and Krikland, A.I.},
     14259  title = {The effects of electron and photon scattering on signal and noise transfer properties of scintillators in CCD cameras used for electron detection},
     14260  journal = {Ultramicroscopy},
     14261  year = {1998},
     14262  volume = {75},
     14263  pages = {23-33}
     14264}
     14265@article{Lencova2008,
     14266  author = {Lencova, B. and Lenc, M. and Hawkes, P.W.},
     14267  title = {A pitfall in the calculation of higher order aberrations},
     14268  journal = {Ultramicroscopy},
     14269  year = {2008},
     14270  volume = {108},
     14271  pages = {737-740}
     14272}
     14273@article{Browning1996,
     14274  author = {Browning, N.D. and Pennycook, S.J.},
     14275  title = {Direct Experimental Determination of the Atomic Structure at Internal Interfaces},
     14276  journal = {Journal of Physics D},
     14277  year = {1996},
     14278  volume = {29},
     14279  pages = {1779}
     14280}
     14281@article{Fellmann2002,
     14282  author = {Fellmann, D. and Pulokas, J. and MIlligan, R.A. and Carragher, B. and Potter, C.S.},
     14283  title = {A relational database for {cryoEM}: experience at one year and 50000 images},
     14284  journal = {Journal of Structural Biology},
     14285  year = {2002},
     14286  volume = {137},
     14287  pages = {273-282}
     14288}
     14289@article{Mueller2007,
     14290  author = {{M\"uller}, S.A. and Engel, A.},
     14291  title = {Biological Scanning Transmission Electron Microscopy: Imaging and Single Molecule Mass Determination},
     14292  journal = {Chimia},
     14293  year = {2006},
     14294  volume = {60},
     14295  number = {11},
     14296  pages = {749-752}
     14297}
     14298@article{Rhinow2008,
     14299  author = {Rhinow, D. and Kuhlbrandt, W.},
     14300  title = {Electron cryo-microscopy of biological specimens on conductive titanium-silicon metal glass films},
     14301  journal = {Ultramicroscopy},
     14302  year = {2008},
     14303  volume = {108},
     14304  pages = {698-705}
     14305}
     14306@article{Nomaguchi2004,
     14307  author = {Nomaguchi, T. and Kawasaki, T. and Kimura, Y. and Takai, Y.},
     14308  title = {Separation of linear and non-linear imaging components in high-resolution transmission electron microscope images},
     14309  journal = {Journal of Electron Microscopy},
     14310  year = {2004},
     14311  volume = {53},
     14312  pages = {403-406}
     14313}
     14314@article{Browning1997,
     14315  author = {Browning, N.D. and Wallis, D.J. and Nllist, P.D. and Pennycook, S.J.},
     14316  title = {{EELS} in the {STEM}: Determination of Materials Properties on the Atomic Scale},
     14317  journal = {Micron},
     14318  year = {1997},
     14319  volume = {28},
     14320  pages = {333}
     14321}
     14322@article{Gipson2007,
     14323  author = {Gipson, B. and Zeng, X. and Zhang, Z.Y. and Stahlberg, H.},
     14324  title = {2dx - User-friendly image processing for 2D crystals},
     14325  journal = {Journal of Strcutural Biology},
     14326  year = {2007},
     14327  volume = {157},
     14328  pages = {64-72}
     14329}
     14330@article{Oho1997,
     14331  author = {Oho, E. and Hoshino, Y. and Ogashiwa, T.},
     14332  title = {New Generation Scanning Electron Microscopy Technology Based on the Concept of Active Image Processing},
     14333  journal = {Scanning},
     14334  year = {1997},
     14335  volume = {19},
     14336  number = {7},
     14337  pages = {483-488}
     14338}
     14339@article{Penczek2002,
     14340  author = {Penczek, P.A.},
     14341  title = {Three-dimensional spectral signal-to-noise ratio for a class of reconstruction algorithms},
     14342  journal = {Journal of Structural Biology},
     14343  year = {2002},
     14344  volume = {138},
     14345  pages = {34-46}
     14346}
     14347@article{Gu2003,
     14348  author = {Gu, Y. and Zhou, Z.H. and McCarthy, D.B. and Reed, L.J. and Stoops, J.K.},
     14349  title = {3D electron microscopy reveals the variables deposition and protein dynamics of the peripheral pyruvate dehydrogenase component about the core},
     14350  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     14351  year = {2003},
     14352  volume = {100},
     14353  number = {23},
     14354  pages = {7015-7020}
     14355}
     14356@article{Bouwer2004,
     14357  author = {Bouwer, J.C. and Mackey, M.R.and Lawrence, A. and Deerinck, T.J. and Jones, Y.Z. and Terada, M. and Martone, M.E. and Peltier, S. and Ellisman, M.H.},
     14358  title = {Automated most-probable loss tomography of thick selectively stained biological specimens with quantitative measurement of resolution improvement},
     14359  journal = {Journal of Structural Biology},
     14360  year = {2004},
     14361  volume = {148},
     14362  pages = {297-306}
     14363}
     14364@article{Hell2007,
     14365  author = {Hell, S.W.},
     14366  title = {Far-Field Optical Nanoscopy},
     14367  journal = {Science},
     14368  year = {2007},
     14369  volume = {316},
     14370  pages = {1153-1158}
     14371}
     14372@techreport{Bosch2004,
     14373  author = {Bosch, E.G.T.},
     14374  title = {The use of mutual information in image registration},
     14375  year = {2004},
     14376  number = {PR-TN-2004/00364},
     14377  address = { Eindhoven, The Netherlands},
     14378  institution = {Philips Research},
     14379  type = {Technical Note}
     14380}
     14381@article{Kunji2001,
     14382  author = {Kunji, E.R.S. and Spudich, E.N. and Grisshammer, R. and Henderson, R. and Spudich, J.L.},
     14383  title = {Electron Crystallographic Analysis of Two-Twodimensional Crystals of Sensory Rhodopsin II:A 6.9 {\AA} Projection Structure},
     14384  journal = {Journal of Molecular Biology},
     14385  year = {2001},
     14386  volume = {308},
     14387  pages = {279-293}
     14388}
     14389@article{Reichenbach1991,
     14390  author = {Reichenbach, S.E. and Park, S.K. and Narayanswamy, R.},
     14391  title = {Characterizing digital image acquisition devices},
     14392  journal = {Optical Engineering},
     14393  year = {1991},
     14394  volume = {30},
     14395  pages = {170-177}
     14396}
     14397@article{Bos1993,
     14398  author = {Bos, A. van den and Swarte, J.H.},
     14399  title = {Resolvability of the parameters of multiexponentials and other sum models},
     14400  journal = {IEEE Transactions of Signal Processing},
     14401  year = {1993},
     14402  volume = {41},
     14403  pages = {313-322}
     14404}
     14405@article{Gu2007,
     14406  author = {Gu, L. and Srot, V. and Sigle, W. and Koch, C. and Aken, P. van and Scholz, F. and Thapa, S.B. and Kirchner, C. and Jetter, M. and Ruehle, M.},
     14407  title = {Band-gap measurements of direct and indirect semiconductors using monochromated electrons},
     14408  journal = {Physical Review B},
     14409  year = {2007},
     14410  volume = {75},
     14411  pages = {195214}
     14412}
     14413@article{Kisielowski2008,
     14414  author = {Kisielowski, C.},
     14415  title = {Detection of Single Atoms and Buried Defects in Three Dimensions by Aberration-Corrected Electron Microscope with 0.5-AA Information Limit},
     14416  journal = {Microscopy and Microanalysis},
     14417  year = {2008},
     14418  volume = {14},
     14419  pages = {469-477}
     14420}
     14421@article{Nellist2006,
     14422  author = {Nellist, P.D. and behan, G. and Kirkland, A.I. and Hetherington, C.J.D.},
     14423  title = {Confocal operation of a transmission electron microscope with two aberration correctors},
     14424  journal = {Applied Physics Letters},
     14425  year = {2006},
     14426  volume = {89},
     14427  pages = {124105}
     14428}
     14429@article{Scheres2005,
     14430  author = {Scheres, S.H.W. and Valle, M. and Carazo, J.-M.},
     14431  title = {Fast maximum-likelihood refinement of electron microscopy images},
     14432  journal = {Bioinfomatics},
     14433  year = {2005},
     14434  volume = {21 S2},
     14435  pages = {ii243-ii244}
     14436}
     14437@article{Girit2009,
     14438  author = {Girit, C.O. and Meyer, J.C. and Erni, R.and Rossel, M.D. and Kisielowski, C. and Yang, Li. and Park, C.-H. and Crommie, M.F. and Cohen, M.L. and Louie, S.G. and Zettl, A.},
     14439  title = {Graphene at the Edge: Stability and Dynamics},
     14440  journal = {Science},
     14441  year = {2009},
     14442  volume = {323},
     14443  pages = {1705-1707}
     14444}
     14445@article{Yamazaki2005,
     14446  author = {Yamazaki, T. and Kotaka, Y. and Kikuchi, Y. and Watanabe, K.},
     14447  title = {Precise measurement of third-order spherical aberration using low-order zone-axis {Ronchigrams}},
     14448  journal = {Ultramicroscopy},
     14449  year = {2005},
     14450  note = {in press}
     14451}
     14452@article{Ronchi1964,
     14453  author = {Ronchi, V.},
     14454  title = {Forty years of history of a grating interferometer},
     14455  journal = {Applied Optics},
     14456  year = {1964},
     14457  volume = {3},
     14458  number = {4},
     14459  pages = {437-452}
     14460}
     14461@article{Lorusso2003,
     14462  author = {Lorusso, G.F. and Joy, D.C.},
     14463  title = {Experimental Resolution Measurement in Critical Dimension Scanning Electron Microscope Metrology},
     14464  journal = {Scanning},
     14465  year = {2003},
     14466  volume = {25},
     14467  number = {4},
     14468  pages = {175-180}
     14469}
     14470@article{Yin2003,
     14471  author = {Yin, Z. and Zheng, Y. and Doerschuk, P.C. and Nararajan, P. and Johnson, J.E.},
     14472  title = {A statistical approach to computer processing of cryo-electron microscope images: virion classification and {3-D} reconstruction},
     14473  journal = {Journal of Structural Biology},
     14474  year = {2003},
     14475  volume = {144},
     14476  pages = {24-50}
     14477}
     14478@article{Bammes2009,
     14479  author = {Bammes, B.E. and Jakana, J. and Schmid, M.F. and Chiu, W.},
     14480  title = {Radiation damage effects at four specimen temperatures from 4 K to 100 K},
     14481  journal = {Journal of Structural Biology},
     14482  year = {2009}
     14483}
     14484@article{Shao1988,
     14485  author = {Shao, Z.},
     14486  title = {On the fifth order aberration in a sextupole corrected probe forming system},
     14487  journal = {Rev. Sci. Instrum.},
     14488  year = {1988},
     14489  volume = {59},
     14490  number = {11},
     14491  pages = {2428-2437}
     14492}
     14493@article{Haas1999,
     14494  author = {Haas, F. de and Paatero, A.O. and Mindich, L. and Bamford, D.H. and Fuller, S.D.},
     14495  title = {A Symmetry Mismatch at the Site of {RNA} Packaging in the Polymerase Complex of {dsRNA} Bacteriophage $\phi$6},
     14496  journal = {Journal of Molecular Biology},
     14497  year = {1999},
     14498  volume = {294},
     14499  pages = {357-372}
     14500}
     14501@article{Glaeser2004,
     14502  author = {Glaeser, R.M. and Downing, K.H.},
     14503  title = {Specimen charging on thin films with one conducting layer: discussion of physical principles},
     14504  journal = {Microscopy and Microanalysis},
     14505  year = {2004},
     14506  volume = {10},
     14507  pages = {790-796}
     14508}
     14509@article{Takai2006,
     14510  author = {Takai, Y. and Nomaguchi, T. and Matsushita, S. and Kimura, Y.},
     14511  title = {Molecular-scale imaging of unstained deoxyribonucleic acid fibers by phase transmission electron microscopy},
     14512  journal = {Applied Physics Letters},
     14513  year = {2006},
     14514  volume = {89},
     14515  pages = {133903}
     14516}
     14517@article{Gabashvili2000,
     14518  author = {Gabashvili, I.S. and Agrawal, R.K. and Spahn, C.M.T. and Gracssucci, R.A. and Svergun, D.I. and Frank, J. and Penczek, P.},
     14519  title = {Solution Structure of the {E. coli} {70S} Ribosome at 11.5{\AA} Resolution},
     14520  journal = {Cell},
     14521  year = {2000},
     14522  volume = {100},
     14523  pages = {537-549}
     14524}
     14525@article{Kabius2009,
     14526  author = {Kabius, B. and Hartel, P. and Haider, M. and {M\"uller}, H. and Uhlemann, S. and Loebau, U. and Zach, J. and Rose, H.},
     14527  title = {First application of Cc-corrected imaging for high-resolution and energy-filtered TEM},
     14528  journal = {Journal Of Electron Microscopy},
     14529  year = {2009},
     14530  volume = {1},
     14531  pages = {1-9}
     14532}
     14533@article{Rose1977,
     14534  author = {Rose, H.},
     14535  title = {Nonstandard imaging methods in electron microscopy},
     14536  journal = {Ultramicroscopy},
     14537  year = {1977},
     14538  volume = {2},
     14539  pages = {251-267}
     14540}
     14541@article{HohmannMarriott2009_SI,
     14542  author = {Hohmann-Marriott, M.F. and Sousa, A.A. and Azari, A.A. and Glushakova, S. and Zhang, G. and Zimmerberg, J. and Leapmann, R.D.},
     14543  title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography},
     14544  journal = {Nature Methods},
     14545  year = {2009},
     14546  volume = {6},
     14547  number = {10},
     14548  pages = {729-732},
     14549  note = {Supplementary Information}
     14550}
     14551@article{Zhu2009,
     14552  author = {Zhu, Y. and Inada, H. and Nakamura, K. and Wall, J.},
     14553  title = {Imaging single atoms using secondary electrons with an aberration-corrected electron microscope},
     14554  journal = {Nature Methods},
     14555  year = {2009},
     14556  volume = {8},
     14557  pages = {808-811}
     14558}
     14559@article{Pennycook1988,
     14560  author = {Pennycook, S.J. and Boatner, L.A.},
     14561  title = {Chemically Sensitive Structure Imaging with a Scanning Transmission Electron Microscope},
     14562  journal = {Nature},
     14563  year = {1988},
     14564  volume = {336},
     14565  pages = {565}
     14566}
     14567@article{Lehmann1999,
     14568  author = {Lehmann, M. and Lichte, H. and Geiger, D. and Lang, G. and Schweda, E.},
     14569  title = {Electron Holography at atomic dimensions - present state},
     14570  journal = {Materials Characterization},
     14571  year = {1999},
     14572  volume = {42},
     14573  pages = {249-263}
     14574}
     14575@article{Zuo2003,
     14576  author = {Zuo, J.M. and Vartanyants, I. and Gao, M. and Zhang, R. and Nagahara, L.A.},
     14577  title = {Atomic Resolution Imaging of a Carbon Nanotube from Diffraction Intensities},
     14578  journal = {Science},
     14579  year = {2003},
     14580  volume = {300},
     14581  pages = {1419-1421}
     14582}
     14583@article{Sousa2009,
     14584  author = {Sousa, A.A. and Hohmann-Marriott, M.F. and Zhang, G. and Leapman, R.D.},
     14585  title = {Monte Carlo electron-trajectory simulations in bright-field and dark-field STEM:Implications for tomography of thick biological sections},
     14586  journal = {Ultramicroscopy},
     14587  year = {2009},
     14588  volume = {109},
     14589  pages = {213-221}
     14590}
     14591@article{Downing1975,
     14592  author = {Downing, K.H. and Siegel, B.M.},
     14593  title = {Discrimination of Heavy and Ligth Components in Electron Microscopy Using Single-Sideband Holographic Techniques},
     14594  journal = {Optik},
     14595  year = {1975},
     14596  volume = {42},
     14597  pages = {155-175}
     14598}
     14599@article{Takeguchi2008,
     14600  author = {Takeguchi, M. and Hasimoto, A. and Shimojo, M. and Mitsuishi, K. and Furuya, K.},
     14601  title = {Development of a stage-scanning system for high-resolution confocal STEM},
     14602  journal = {Journal of Electron Microscopy},
     14603  year = {2008},
     14604  volume = {57},
     14605  pages = {123-127}
     14606}
     14607@article{Nottbohm2008,
     14608  author = {Nottbohm, C.T. and Beyer, A. and Sologubenko, A.S. and Ennen, I. and {H\"utten}, A. and {R\"osner}, H. and Eck, W. and Mayer, J. and {G\"olzh\"auser}},
     14609  title = {Novel carbon nanosheets as support for ultrahigh-resolution structural analysis of nanoparticles},
     14610  journal = {Ultramicroscopy},
     14611  year = {2008},
     14612  volume = {108},
     14613  pages = {885-892}
     14614}
     14615@article{Mitterbauer2003,
     14616  author = {Mitterbauer, C. and Kothleitner, G. and Grogger, W. and Zandbergen, H. and Freitag, B. and Tiemeijer, P.C. and Hofer, F.},
     14617  title = { Electron energy-loss near-edge structures of 3d transition metal oxides recorded at high-energy resolution},
     14618  journal = {Ultramicroscopy},
     14619  year = {2003},
     14620  volume = {96},
     14621  pages = {469-480}
     14622}
     14623@article{Morniroli1992,
     14624  author = {Morniroli, J.P. and Steeds, J.W.},
     14625  title = {Microdiffratction as a tool for crystal structure identification and determination},
     14626  journal = {Ultramicroscopy},
     14627  year = {1992},
     14628  volume = {45},
     14629  pages = {219-239}
     14630}
     14631@article{Hetherington2008,
     14632  author = {Hetherington, C.J.D. and Chang, L.Y.S. and Haigh, S. and Nellist, P.D. and Gontard, L.C. and Dunin-Borkowski, R.E. and Kirkland, A.I.},
     14633  title = {High-Resolution TEM and the Application of Direct and Indirect Aberration Correction},
     14634  journal = {Microscopy and Microanalysis},
     14635  year = {2008},
     14636  volume = {14},
     14637  pages = {60-67}
     14638}
     14639@article{Hartwell1999,
     14640  author = {Hartwell, L.H. and Hopfield, J.J. and Leibler, S. and Murray, A.M.},
     14641  title = {From molecular to modular cell biology},
     14642  journal = {Nature},
     14643  year = {1999},
     14644  volume = {402},
     14645  pages = {C47-C50}
     14646}
     14647@article{Uno2005,
     14648  author = {Uno, S. and Honda, K. and Nakamura, N. and Matsuya, M. and Zach, J.},
     14649  title = {Aberration correction and its automatic control in scanning electron microscopes},
     14650  journal = {Optik},
     14651  year = {2005},
     14652  volume = {116},
     14653  pages = {438-448}
     14654}
     14655@article{Joy2002,
     14656  author = {Joy, D.C.},
     14657  title = {{SMART}- a programm to measure {SEM} resolution and imaging performance},
     14658  journal = {Journal of Microscopy},
     14659  year = {2002},
     14660  volume = {208},
     14661  number = {1},
     14662  pages = {24-34}
     14663}
     14664@article{Danev2006,
     14665  author = {Danev, R. and Nagayama, K.},
     14666  title = {Applicability of thin film phase plates in biological electron microscopy},
     14667  journal = {Biophysics},
     14668  year = {2006},
     14669  volume = {2},
     14670  pages = {35-43}
     14671}
     14672@article{Malac2006,
     14673  author = {Malac, M. and Beleggia, M. and Egerton, R. and Zhu, Y.},
     14674  title = {Bright-field {TEM} imaging of single molecules: Dream or near future?},
     14675  journal = {Ultramicroscopy},
     14676  year = {2006},
     14677  volume = {107},
     14678  pages = {40-49}
     14679}
     14680@article{Harutyunyan2009,
     14681  author = {Harutyunyan, A.R. and Chen, G. and Paronyan, T.M. and Pigos, E.M. and Kuznetsov, O.A. and Hewaparakrama, K. and Kim, S.M. and Zakharov, D. and Stach, E.A. and Sumanasekera, G.U.},
     14682  title = {Preferential Growth of Single-Walled Carbon Nanotubes with Metallic Conductivity},
     14683  journal = {Science},
     14684  year = {2009},
     14685  volume = {326},
     14686  pages = {116-120}
     14687}
     14688@article{Yan2007,
     14689  author = {Yan, X. and Sinkovits, R.S. and Baker, T.S.},
     14690  title = {AUTO3DEM - an automated and high throughput program for image reconstruction of icosahedral particles},
     14691  journal = {Journal of Strcutural Biology},
     14692  year = {2007},
     14693  volume = {157},
     14694  pages = {73-82}
     14695}
     14696@article{Buban2009,
     14697  author = {Buban, J.P. and Ramasse, Q. and Gipson, B. and Browning, N.D. and Stahlberg, H.},
     14698  title = {High-resolution low-dose scanning transmission electron microscopy},
     14699  journal = {Journal of Electron Microscopy},
     14700  year = {2009},
     14701  pages = {1-10}
     14702}
     14703@article{Bleloch2004,
     14704  author = {Bleloch, A. and Lupini, A. },
     14705  title = {Imaging at the picometer scale},
     14706  journal = {Materials Today},
     14707  year = {2004},
     14708  pages = {42-48}
     14709}
     14710@article{Nelayah2009,
     14711  author = {Nelayah, J. and Gu, L. and Sigle, W. and Koch, C.T. and Pastoriza-Santos, I. and Liz-Marzan, L.M. and Aken, P.A. van},
     14712  title = {Direct imaging of surface plasmon resonances on single triangular silver nanoprisms at optical wavelength using low-loss EFTEM imaging},
     14713  journal = {Optics Letters},
     14714  year = {2009},
     14715  volume = {34},
     14716  number = {7},
     14717  pages = {1003-1005}
     14718}
     14719@article{Penrose1956,
     14720  author = {Penrose, R.},
     14721  title = {On best approximate solution of linear matrix equations},
     14722  journal = {Proceedings of the Cambridge Philosophical Society},
     14723  year = {1956},
     14724  volume = {52},
     14725  pages = {17-19}
     14726}
     14727@article{Buczko2000,
     14728  author = {Buczko, R. and Duscher, G. and Pennycook, S>J. and Pantelides, S.T.},
     14729  title = {Excitonic Effects in Core-Excitation Spectra of Semiconductors},
     14730  journal = {Physical Review Letters},
     14731  year = {2000},
     14732  volume = {85},
     14733  pages = {2168}
     14734}
     14735@article{Penrose1955,
     14736  author = {Penrose, R.},
     14737  title = {A generalized inverse for matrices},
     14738  journal = {Proceedings of the Cambridge Philosophical Society},
     14739  year = {1955},
     14740  volume = {51},
     14741  pages = {406-413}
     14742}
     14743@article{Cooper2007,
     14744  author = {Cooper, D. and Truche, R. and Rivallin, P. and Hartmann, J.-M. and Laugier, F. and Bertin, F. and Chabli, A. and Rouviere, J.-L.},
     14745  title = {Medium resolution off-axis electron holography with mV sensitivity},
     14746  journal = {Applied Physics Letters},
     14747  year = {2007}
     14748}
     14749@article{Frank2009,
     14750  author = {Frank, J.},
     14751  title = {Single-particle reconstructionof biological macromolecules in electron microscopy - 30 years},
     14752  journal = {Quaterly Reviews of Biophysics},
     14753  year = {2009},
     14754  volume = {42},
     14755  number = {3},
     14756  pages = {139-158}
     14757}
     14758@book{Bronstein1991,
     14759  author = {Bronstein, I.N. and Semendjajew, K.A.},
     14760  title = {Taschenbuch der Mathematik},
     14761  year = {1991},
     14762  publisher = {Teubner},
     14763  address = {Thun, Frankfurt (Main)},
     14764  edition = {25th}
     14765}
     14766@article{Krivanek2008a,
     14767  author = {Krivanek, O.L. and Delby, N. and keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.},
     14768  title = {Advances in Aberration-Corrected Scanning Transmission Electron Microscopy and Electron Energy-Loss Spectroscopy},
     14769  journal = {Advances in Imaging and Electron Physics},
     14770  year = {2008},
     14771  volume = {153},
     14772  pages = {121-160}
     14773}
     14774@article{Nellist2000,
     14775  author = {Nellist, P.D. and Pennycook, S.J.},
     14776  title = {The principles and interpretation of annular dark-field z-contrast imaging},
     14777  journal = {Advances in Imaging and Electron Physics},
     14778  year = {2000},
     14779  volume = {113},
     14780  pages = {147-203},
     14781  note = {Copy Bernd,Rolf}
     14782}
     14783@article{Chu2009a,
     14784  author = {Chu, M.-W. et al.},
     14785  title = {Probing surface plasmons in individual Ag nanoparticles in the ultra-violet spectral regime},
     14786  journal = {Nanotechnology},
     14787  year = {2009},
     14788  volume = {20},
     14789  pages = {235705}
     14790}
     14791@article{Boisset1997,
     14792  author = {Boisset, N. and Penczek, P.A. and Taveau, J-C. and You, V. and Haas, F. de and Lamy, J.},
     14793  title = {Effects of angular oversampling in three-dimensional reconstruction},
     14794  journal = {Scanning Microscopy},
     14795  year = {1997},
     14796  volume = {11},
     14797  pages = {131-145}
     14798}
     14799@article{Vincent1994,
     14800  author = {Vincent, R. and Midgley, P.A.},
     14801  title = {Double concial beam-rocking system for measurement of integrated electron diffreation intensities},
     14802  journal = {Ultramicroscopy},
     14803  year = {1994},
     14804  volume = {53},
     14805  pages = {271-282}
     14806}
     14807@article{Scheres2005a,
     14808  author = {Scheres, S.H.W. and Valle, M. and {Nu\~nez}, R. and Sorzano, C.O.S. and Marabini, R. and Herman, G.T. and Carazo, J.-M.},
     14809  title = {Maximum-likelihood Multi-reference Refinement for Electron Microscopy Images},
     14810  journal = {Journal of Molecular Biology},
     14811  year = {2005},
     14812  volume = {348},
     14813  pages = {139-149}
     14814}
     14815@article{Cowley2001,
     14816  author = {Cowley, J.M.},
     14817  title = {{STEM} imaging with a thin annular detector},
     14818  journal = {Journal of Electron Microscopy},
     14819  year = {2001},
     14820  volume = {50},
     14821  number = {3},
     14822  pages = {147-155}
     14823}
     14824@article{Uhlemann1996,
     14825  author = {Uhlemann, S. and Rose, H.},
     14826  title = {Acceptance of imaging energy filters},
     14827  journal = {Ultramicroscopy},
     14828  year = {1996},
     14829  volume = {63},
     14830  pages = {161-167}
     14831}
     14832@article{Frank1981,
     14833  author = {Frank, J. and Verschoor, A. and Boublik, M.},
     14834  title = {Computer Averaging of Electron Micrographs of 40S Ribosomal Subunits},
     14835  journal = {Science},
     14836  year = {1981},
     14837  volume = {214}
     14838}
     14839@article{Maccagnano-Zacher2008,
     14840  author = {Maccagnano-Zacher, S.E. and Mkhoyan, K.A. and Kirkland, E.J. and Silcox, J.},
     14841  title = {Effects of tilt on high-resolution ADF-STEM imaging},
     14842  journal = {Ultramicroscopy},
     14843  year = {2008},
     14844  volume = {187},
     14845  pages = {718-726}
     14846}
     14847@article{Gubbens2010,
     14848  author = {Gubbens, A. and Barfels, M. and Trevor, C. and Twesten, R. and Mooney, P. and Thomas, P. and Menon, N. and Kraus, B. and Mao, C. and Mcginn, B.},
     14849  title = {The GIF quantum, a next generation post-column imaging energy filter},
     14850  journal = {Ultramicroscopy},
     14851  year = {2010}
     14852}
     14853@article{James1999,
     14854  author = {James, E.M. and Browning, N.D.},
     14855  title = {Practical aspects of atomic resolution imaging and analysis in {STEM}},
     14856  journal = {Ultramicroscopy},
     14857  year = {1999},
     14858  volume = {78},
     14859  pages = {125-139}
     14860}
     14861@article{Du2007,
     14862  author = {Du, K. and Hochmeister, K. von and Philipp, F.},
     14863  title = {Quantitative comparison of image contrast and pattern between experimental and simulated high-resolution transmission electron micrographs},
     14864  journal = {Ultramicroscopy},
     14865  year = {2007},
     14866  volume = {107},
     14867  pages = {281-292}
     14868}
     14869@article{Krivanek1991,
     14870  author = {Krivanek, O.L. and Gubbens, A.J. and Dellby, N.},
     14871  title = {Developments in EELS instrumentation for spectroscopy and imaging},
     14872  journal = {Mirosc. Mircoanal. Microstruct},
     14873  year = {1999},
     14874  volume = {2},
     14875  pages = {315-332}
     14876}
     14877@article{Moore1920,
     14878  author = {Moore, E.H.},
     14879  title = {On the reciprocal of the general algebraic matrix},
     14880  journal = {Bulletin of the American Mathematical Society},
     14881  year = {1920},
     14882  volume = {26},
     14883  pages = {394-395}
     14884}
     14885@article{James1997,
     14886  author = {James, E.M. and Rodenburg, J.M},
     14887  title = {A method for measuring the effective source coherence in a field emission transmission electron microscope},
     14888  journal = {Applied Surface Science},
     14889  year = {1997},
     14890  volume = {111},
     14891  pages = {174-179}
     14892}
     14893@article{Davey2002,
     14894  author = {Davey, C.A. and Richmond, T.J.},
     14895  title = {{DNA}-dependent divalent cation binding in the nucleosome core particle},
     14896  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     14897  year = {2002},
     14898  volume = {99},
     14899  pages = {11169-11174}
     14900}
     14901@article{Kisielowski2001,
     14902  author = {Kisielowski, C. and Hetherington, C.J.D. and Wang, Y.C. and Kilaas, R. and O'keefe, M.A. and Thust, A.},
     14903  title = {Imaging columns of the light elements carbon,nitrogen and oxygen with sub {\AA}ngstrom resolution},
     14904  journal = {Ultramicroscopy},
     14905  year = {2001},
     14906  volume = {89},
     14907  pages = {243-263}
     14908}
     14909@article{Chu2009,
     14910  author = {Chu, M.-W. and Myroshnchenko, V. and Chen, C.H. and Deng, J.-P. and Mou, C.-Y. and Garcia de Abajo, F.J.G.},
     14911  title = {Crystal Structure of the {30S} Ribosomal Subunit from Thermus thermophilus: Purification, Crystallization and Structure Determination},
     14912  journal = {Journal of Molecualar Biology},
     14913  year = {2009}
     14914}
     14915@article{Chu2008,
     14916  author = {Chu, M.-W. and Chen, C.-H. and Garcia de Abajo, F.J.G. and Deng, J.-P. and Mou, C.-Y.},
     14917  title = {Surface exciton polaritons in individual Au nanoparticles in the far-ultraviolet spectral regime},
     14918  journal = {Physical Review B},
     14919  year = {2008},
     14920  volume = {77},
     14921  pages = {245402}
     14922}
     14923@article{Duscher2001,
     14924  author = {Duscher, G. and Buczko, R. and Pennycook, S.J. and Pantelides, S.T.},
     14925  title = {Core-Hole Effects on Energy-Loss Near-Edge Structure},
     14926  journal = {Ultramicroscopy},
     14927  year = {2001},
     14928  volume = {86},
     14929  pages = {355}
     14930}
     14931@article{Hytch1998,
     14932  author = {Hytch, M.J. and Snoeck, E. and Kilaas, R.},
     14933  title = {Quantitative measurement of displacement and strain fields from HREM micrographs},
     14934  journal = {Ultramicroscopy},
     14935  year = {1998},
     14936  volume = {74},
     14937  pages = {131-146}
     14938}
     14939@article{Lazar2006,
     14940  author = {Lazar, S. and Botton, G.A. and Zandbergen, H.W.},
     14941  title = {Enhancement of resolution in core-loss and low-loss spectroscopy in a monochromated microscope},
     14942  journal = {Ultramicroscopy},
     14943  year = {2006},
     14944  volume = {106},
     14945  pages = {1091-1103}
     14946}
     14947@article{Bullogh1999,
     14948  author = {Bullough, P.A. and Henderson, R.},
     14949  title = {The Projection Structure of the Low Temperature K Intermediate of the Bacteriorhodopsin Photocycle D etermined by Electron Diffraction},
     14950  journal = {Journal of Molecular Biology},
     14951  year = {1999},
     14952  volume = {286},
     14953  pages = {1663-1671}
     14954}
     14955@article{Rohde2005,
     14956  author = {Rohde, G.K. and Barnett, A.S. and Basser, P.J. and Pierpaoli, C.},
     14957  title = {Estimating intensity variance due to noise in registered images: Applications to diffusion tensor {MRI}},
     14958  journal = {NeuroImage},
     14959  year = {2005},
     14960  volume = {26},
     14961  pages = {673-684}
     14962}
     14963@article{Lichte2008a,
     14964  author = {Lichte, H. and Lehmann, M.},
     14965  title = {Electron holography - basics and applications},
     14966  journal = {Reports on Progress in Physics},
     14967  year = {2008},
     14968  pages = {1-43}
     14969}
     14970@article{HohmannMarriott2009,
     14971  author = {Hohmann-Marriott, M.F. and Sousa, A.A. and Azari, A.A. and Glushakova, S. and Zhang, G. and Zimmerberg, J. and Leapmann, R.D.},
     14972  title = {Nanoscale 3D cellular imaging by axial scanning transmission electron tomography},
     14973  journal = {Nature Methods},
     14974  year = {2009},
     14975  volume = {6},
     14976  number = {10},
     14977  pages = {729-732}
     14978}
     14979@article{Sawada2009a,
     14980  author = {Sawada, H. and Tanishiro, Y. and Ohashi, N. and Tomita, T. and Hosokawa, F. and Kaneyama, T. and Kondo, Y. and Takayanagi, K.},
     14981  title = {STEM imaging of 47-pm-separated atomic columns by a spherical aberration-corrected electron microscope with a 300-kV cold field emission gun},
     14982  journal = {Journal of electron microscopy},
     14983  year = {2009},
     14984  volume = {58},
     14985  pages = {357-361}
     14986}
     14987@article{Kim1997,
     14988  author = {Kim, H.S. and Yu, M.L. and Thomson, M.G.R. and Kratchmer, E. and Chang, T.H.P.},
     14989  title = {Energy distributions of Zr/O/W Schottky electron emission},
     14990  journal = {Journal of Applied Physics},
     14991  year = {1997},
     14992  volume = {81},
     14993  pages = {461-465}
     14994}
     14995@article{Baldock2002,
     14996  author = {Baldock, C. and Gilpin, C.J. and Koster, A.J. and Ziese, U. and Kadler, K.E. and Kielty, C.M. and Holmes, D.F.},
     14997  title = {Three-dimensional reconstructions of extracellular matrix polymers using automated electron tomography},
     14998  journal = {Journal of Structural Biology},
     14999  year = {2002},
     15000  volume = {138},
     15001  pages = {130-136}
     15002}
     15003@article{Grigorieff1996,
     15004  author = {Grigorieff, N. and Ceska, T.A. and Downing, K.H. and Baldwin, J.M. and Henderson, R.},
     15005  title = {Electron-crystallographic Refinement of the Structure of Bacteriorhopdopsin},
     15006  journal = {Journal of Molecular Biology},
     15007  year = {1996},
     15008  volume = {259},
     15009  pages = {393-421}
     15010}
     15011@article{Heel1987,
     15012  author = {Heel, M. van},
     15013  title = {Similarity measures between images},
     15014  journal = {Ultramicroscopy},
     15015  year = {1987},
     15016  volume = {21},
     15017  pages = {95-100}
     15018}
     15019@article{Akase2010,
     15020  author = {Akase, Z. and Shindo, D.},
     15021  title = {In situ Lorentz microscopy in an alternating magnetic field},
     15022  journal = {Journal of Electron Microscopy},
     15023  year = {2010},
     15024  pages = {1-75}
     15025}
     15026@article{Xiong2009,
     15027  author = {Xiong, Q. and Morphew, M.K. and Schwartz, C.L. and Hoenger, A.H. and Mastronarde, D.N.},
     15028  title = {CTF determination and correction for low dose tomographic tilt series},
     15029  journal = {Journal of Structural Biology},
     15030  year = {2009},
     15031  volume = {168},
     15032  pages = {378-387}
     15033}
     15034@article{Unser1987,
     15035  author = {Unser, M. and Trus, B.L. and Steven, A.C.},
     15036  title = {A new resolution criterion based on spectral signal-to-noise ratio},
     15037  journal = {Ultramicroscopy},
     15038  year = {1987},
     15039  volume = {23},
     15040  pages = {39-52}
     15041}
     15042@article{Morniroli2007,
     15043  author = {Morniroli, J.P. and Houdellier, F. and Roucau, C. and Puiggali, J. and Gesti, S. and Redjaimia, A.},
     15044  title = {LACDIF, a new electron diffraction technique obtained with the LACBED configuration and a Cs corrector: Comparison with electron precession},
     15045  journal = {Ultramicroscopy},
     15046  year = {2007},
     15047  volume = {108},
     15048  pages = {100-115}
     15049}
     15050@article{Fu1999,
     15051  author = {Fu, J. and Gnatt, A.L. and Bushnell, D.A. and Jensen, G.J. and Thompson, N.E. and Burgess, R.R. and David, P.R. and Kornberg, R.D.},
     15052  title = {Yeast {RNA} Polymerase {II} at 5{\AA} Resolution},
     15053  journal = {Cell},
     15054  year = {1999},
     15055  volume = {98},
     15056  pages = {799-810}
     15057}
     15058@article{Stadelmann1987,
     15059  author = {Stadelmann, P.A.},
     15060  title = {{EMS} - {A} software package for electron diffration analysis and {HREM} image simulation in material science},
     15061  journal = {Ultramicroscopy},
     15062  year = {1987},
     15063  volume = {21},
     15064  pages = {131-146}
     15065}
     15066@inproceedings{Pennycook2003a,
     15067  author = {Pennycook, S.J. and Lupini, A.R. and Borisevich, A. and Varela, M. and Peng, Y. and Nellist, P.D. and Duscher, G. and Buczko, R. and Pantelides, S.T.},
     15068  title = {Transmission Electron Microscopy: Overview and Challenges},
     15069  year = {2003},
     15070  volume = {683},
     15071  pages = {627},
     15072  publisher = {American Institute of Physics},
     15073  series = {AIP Conference},
     15074  booktitle = {Characterization and Metrology for ULSI Technology}
     15075}
     15076@article{Ronchi1961,
     15077  author = {Ronchi, V.},
     15078  title = {Resolving power of calculates and detected images},
     15079  journal = {Journal of the Optical Society of America},
     15080  year = {1961},
     15081  volume = {51},
     15082  pages = {458-460}
     15083}
     15084@article{Philippsen2007,
     15085  author = {Philippsen, A. and Engel, H.-A. and Engel, A.},
     15086  title = {The contrast-imaging function for tilted specimens},
     15087  journal = {Ultramicroscopy},
     15088  year = {2007},
     15089  volume = {107},
     15090  pages = {202-212}
     15091}
     15092@article{Haurauz1986,
     15093  author = {Haurauz, G. and Heel, M. van},
     15094  title = {Exact filters for general geometry three dimensional reconstruction},
     15095  journal = {Optik},
     15096  year = {1986},
     15097  volume = {78},
     15098  pages = {146-156}
     15099}
     15100@article{Walther2006,
     15101  author = {Walther, T. and Quandt, E. and Stegmann, H. and Thesen, A. and Benner, G.},
     15102  title = {First experimental test of a new monochromated and aberration-corrected 200 {kV} field-emission scanning transmission electron microscope},
     15103  journal = {Ultramicroscopy},
     15104  year = {2006},
     15105  volume = {106},
     15106  pages = {963-969}
     15107}
     15108@article{Muller2006a,
     15109  author = {{M\"uller}, H. and Uhlemann, S. and Hartel, P. and Haider, M.},
     15110  title = {Advancing the Hexapole Cs-Corrector for the Scanning Transmission Electron Microscope},
     15111  journal = {Microscopy and Microanalysis},
     15112  year = {2006},
     15113  volume = {12},
     15114  pages = {442-455}
     15115}
     15116@article{Aoyama2008,
     15117  author = {Aoyama, K. and takagi, T. and Hirase, A. and Miyazawa, A.},
     15118  title = {STEM tomography for thick biological specimens},
     15119  journal = {Ultramicroscopy},
     15120  year = {2008},
     15121  volume = {109},
     15122  pages = {70-80}
     15123}
     15124@techreport{Zande2004,
     15125  author = {Zande, M.J. van der and Kok, C.},
     15126  title = {Aberration analysis in electron microscopy ({T}heory)},
     15127  year = {2004},
     15128  number = {PR-TN-2004/00608},
     15129  address = { Eindhoven, The Netherlands},
     15130  institution = {Philips Research},
     15131  type = {Technical Note}
     15132}
     15133@article{Shibata2004,
     15134  author = {Shibata, N. and Pennycook, S.J. and Gosnell, T.R. and Painter, G.S. and Shelton, W.A. and Becher, P.F.},
     15135  title = {Observation of rare-earth segregation in silicon nitride ceramics at subnanometre dimensions},
     15136  journal = {Nature},
     15137  year = {2004},
     15138  volume = {428},
     15139  pages = {730-734}
     15140}
     15141@article{DeRosier1999,
     15142  author = {DeRosier, D. and Stokes, D.L. and Darst, S.A.},
     15143  title = {Averaging Data Derived from Images of Helical Structures with Different Symmetries},
     15144  journal = {Journal of Molecular Biology},
     15145  year = {1999},
     15146  volume = {289},
     15147  pages = {159-165}
     15148}
     15149@article{Crozier2006,
     15150  author = {Crozier, P.A.},
     15151  title = {Book review: Transmission Electron Energy Loss Spectrometry in Materials Science and the EELS Atlas},
     15152  journal = {Micron},
     15153  year = {2006},
     15154  volume = {38},
     15155  pages = {332}
     15156}
     15157@article{Carlo2002,
     15158  author = {Carlo, S. de and El-Bez, C. and Alvarez-Rua, C. and Borge, J. and Dubochet, J.},
     15159  title = {Cryo-negative staining reduces electron-beam sensitivity of vitrified biological particles},
     15160  journal = {Journal of Structural Biology},
     15161  year = {2002},
     15162  volume = {138},
     15163  pages = {216-222}
     15164}
     15165@inproceedings{Tiemeijer1999a,
     15166  author = {Tiemeijer, P.C.},
     15167  title = {Operation modes of a {TEM} monochromator},
     15168  year = {1999},
     15169  volume = {161},
     15170  pages = {191-196},
     15171  publisher = {IOP Publishing Ltd},
     15172  series = {Electron Microscopy and Analysis Group Conference EMAG99},
     15173  address = {Sheffiled, UK}
     15174}
     15175@article{Thust2009,
     15176  author = {Thust, A.},
     15177  title = {High-Resolution Transmission Electron Microscopy on an Absolute Contrast Scale},
     15178  journal = {Physical Review Letters},
     15179  year = {2009},
     15180  volume = {102},
     15181  pages = {220801}
     15182}
     15183@article{Suenaga2009,
     15184  author = {Suenaaga, K. and Sato, Y. and Liu, Z. and kataura, H. and Okazaki, T. and Kimoto, K. and Sawada, H. and Sasaki, T. and Omoto, K. and Kaneyama, T. and Kondo, Y.},
     15185  title = {Visualizing and identifying single atoms using electron energy-loss spectroscopy with low accelerating voltage},
     15186  journal = {Nature Chemistry},
     15187  year = {2009},
     15188  pages = {1-4}
     15189}
     15190@article{Hill2008,
     15191  author = {Hill, R.and Notte, J. and Ward, B.},
     15192  title = {The ALIS He ion source and its application to high resolution microscopy},
     15193  journal = {Physics Procedia},
     15194  year = {2008},
     15195  volume = {1},
     15196  pages = {135-141}
     15197}
     15198@article{Hohn2007,
     15199  author = {Hohn, M. and Tang, G. and Goodyear, G. and Baldwin, P.R. and Huang, Z. and Penczek, P.A. and Yang, C. and Glaeser, R.M. and Adama, P.D. and Ludtke, S.J.},
     15200  title = {SPARX, a new environment for Cryo-EM image processing},
     15201  journal = {Journal of Strcutural Biology},
     15202  year = {2007},
     15203  volume = {157},
     15204  pages = {47-55}
     15205}
     15206@article{Tang2007,
     15207  author = {Tang, G. and Peng, L. and Baldwin, P.R. and Mann, D.S. and Jiang, W. and Rees, I. and Ludtke, S.J.},
     15208  title = {EMAN2: An extensible image processing suite for electron microscopy},
     15209  journal = {Journal of Strcutural Biology},
     15210  year = {2007},
     15211  volume = {157},
     15212  pages = {38-46}
     15213}
     15214@article{Krivanek2009,
     15215  author = {Krivanek, O.L. and Ursin, J.P. and Bacon, N.J. and Corbin, G.J. and Delby, N. and Hrncirik, P. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.},
     15216  title = {High-energy resolution monochromator for aberration-corrected scanning transmission electron microscopy/electron energy-loss spectroscopy},
     15217  journal = {Philosophical Transactions of the Royal Society},
     15218  year = {2009},
     15219  volume = {367},
     15220  pages = {3683-3697}
     15221}
     15222@article{Krivanek2008,
     15223  author = {Krivanek, O.L. and Corbin, G.K. and Dellby, N. and Elston, B.F. and Keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S. and Woodruff,J.W.},
     15224  title = {An electron microscope for the aberration-corrected era},
     15225  journal = {Ultramicroscopy},
     15226  year = {2008},
     15227  volume = {108},
     15228  pages = {179-195}
     15229}
     15230@article{Gunawan2009,
     15231  author = {Gunawan, L. and Lazar, S. and Gautreau, O. and Narnagea, C. and Pignolet, A. and Botton, G.A.},
     15232  title = {Locating La atoms in epitaxial $Bi_{3.25}La_{0.75}Ti_3O_{12}$ films through atomic resolution electron energy loss spectroscopy mapping},
     15233  journal = {Applied Physics Letters},
     15234  year = {2009},
     15235  volume = {95},
     15236  pages = {192902}
     15237}
     15238@misc{Krivanek2001,
     15239  author = {Krivanek, O.L. and Dellby, N. and Lupini, A.R.},
     15240  title = {Autoadjusting charged-particle probe-forming apparatus},
     15241  year = {2001},
     15242  organization = {NION},
     15243  howpublished = {EP application number: 01308443.9},
     15244  note = {pending}
     15245}
     15246@article{Cox1986,
     15247  author = {Cox, I.J. and Sheppard, C.J.R.},
     15248  title = {Information capacity and resolution in an optical system},
     15249  journal = {Journal of the Optical Society of America A},
     15250  year = {1986},
     15251  volume = {3},
     15252  pages = {1152-1158}
     15253}
     15254@article{Downing2004,
     15255  author = {Downing, K.H. and McCartney, M.R. and Glaeder, R.M.},
     15256  title = {Experimental characterization and mitigation of specimen charging on thin films with one conducting layer},
     15257  journal = {Microscopy and Microanalysis},
     15258  year = {2004},
     15259  volume = {10},
     15260  pages = {783-789}
     15261}
     15262@article{Hohenstein1992,
     15263  author = {Hohenstein, M.},
     15264  title = {Single Sideband Imagin in High-Resolution Electron Microscopy},
     15265  journal = {Applied Physics A},
     15266  year = {1992},
     15267  volume = {54},
     15268  pages = {485-492}
     15269}
     15270@article{Mitsuishi2006,
     15271  author = {Mitsuishi, K. and Takeguchi, M. and Kondo, Y. and Hosokawa, F. and Okamoto, K. and Sannomiva, T. and Hori, M. and Iwama, T.},
     15272  title = {Ultrahigh-Vacuum Third-Order Spherical Aberration (Cs) Corrector for a Scanning Transmission Electron Microscope},
     15273  journal = {Microscopy and Microanalysis},
     15274  year = {2006},
     15275  volume = {12},
     15276  pages = {1-5}
     15277}
     15278@article{Koster1987,
     15279  author = {Koster, A.J. and Bos, A. van den and Mast, K.D. van der},
     15280  title = {An autofocus method for a {TEM}},
     15281  journal = {Ultramicroscopy},
     15282  year = {1987},
     15283  volume = {21},
     15284  pages = {209-222}
     15285}
     15286@article{Egerton2003,
     15287  author = {Egerton, R.F.},
     15288  title = {New techniques in electron energy-loss spectroscopy and energy-filtered imaging},
     15289  journal = {Micron},
     15290  year = {2003},
     15291  volume = {34},
     15292  pages = {127-139}
     15293}
     15294@article{Egerton2004,
     15295  author = {Egerton, R.F. and Li, P. and Malac, M.},
     15296  title = {Radiation damage in the TEM and SEM},
     15297  journal = {Micron},
     15298  year = {2004},
     15299  volume = {35},
     15300  pages = {399-409}
     15301}
     15302@article{Egerton2007,
     15303  author = {Egerton, R.F.},
     15304  title = {Limits to the spatial, energy and momentum resolution of electron energy-loss spectroscopy},
     15305  journal = {Ultramicroscopy},
     15306  year = {2007},
     15307  volume = {107},
     15308  pages = {575-586}
     15309}
     15310@article{Egerton2009,
     15311  author = {Egerton, R.F.},
     15312  title = {Electron energy-loss spectroscopy in the TEM},
     15313  journal = {Reports on Progress in Physics},
     15314  year = {2009},
     15315  volume = {72},
     15316  pages = {016502}
     15317}
     15318@article{Baldwin1988,
     15319  author = {Baldwin, J.M. and Henderson, R. and Backman, E. and Zemlin, F.},
     15320  title = {Images of purple membrane at 2.8{\AA} resolution obtained by cryo-electron microscopy},
     15321  journal = {Journal of Molecular Biology},
     15322  year = {1988},
     15323  volume = {202},
     15324  pages = {585-591}
     15325}
     15326@article{Zhang2008,
     15327  author = {Zhang, X. and Settembre, E. and Xu. Chen, Dormitzer, P.R. and Bellamy, R. and Harrison, S.C. and Grigorieff, N.},
     15328  title = {Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction},
     15329  journal = {Proceedings of the National Academy of Science of America},
     15330  year = {2008},
     15331  volume = {105},
     15332  number = {6},
     15333  pages = {1867-1872}
     15334}
     15335@article{Downing1979,
     15336  author = {Downing, K.H.},
     15337  title = {Possibilities of heavy atom discrimination using single-sideband techniques},
     15338  journal = {Ultramicroscopy},
     15339  year = {1979},
     15340  volume = {4},
     15341  pages = {13-31}
     15342}
     15343@article{Zheng2007,
     15344  author = {Zheng, S.Q. and Kollman, J.M. and Braunfeld, M.B. and Sedat, J.W. and Agard, D.A.},
     15345  title = {Automated acquisition of electron microscopic random conical tilt sets},
     15346  journal = {Journal of Strcutural Biology},
     15347  year = {2007},
     15348  volume = {157},
     15349  pages = {148-155}
     15350}
     15351@article{Eyidi2006,
     15352  author = {Eyidi, D. and Hebert, C. and Schattschneider, P.},
     15353  title = {Short note on parallel illumination in the {TEM}},
     15354  journal = {Ultramicroscopy},
     15355  year = {2006},
     15356  volume = {106},
     15357  pages = {1144-1149}
     15358}
     15359@article{Mallick2005,
     15360  author = {Mallick, S.P. and Carragher, B. and Potter, C.S. and Kriegman, D.J.},
     15361  title = {ACE: Automated CTF Estimation},
     15362  journal = {Ultramicroscopy},
     15363  year = {2005},
     15364  volume = {104},
     15365  pages = {8-29}
     15366}
     15367@article{Liu2009,
     15368  author = {Liu, K. and Schwind, G.A. and Swanson, L.W.},
     15369  title = {Off-axis emission properties for the extended Schottky electron source},
     15370  journal = {J. Vac. Sci. Technol. B},
     15371  year = {2009},
     15372  volume = {27},
     15373  pages = {2547-2552}
     15374}
     15375@article{Kirkland1987,
     15376  author = {Kirkland, E.J. and Loane, R.F. and Silcox, J.},
     15377  title = {Simulation of annular dark field {STEM} images using a modified mutlislice method},
     15378  journal = {Ultramicroscopy},
     15379  year = {1987},
     15380  volume = {23},
     15381  pages = {77-96}
     15382}
     15383@article{Sigworth1998,
     15384  author = {Sigworth, F.J.},
     15385  title = {A Maximum-Likelihood Approach to Single-Particle Image Refinement},
     15386  journal = {Journal of Structural Biology},
     15387  year = {1998},
     15388  volume = {122},
     15389  pages = {328-339}
     15390}
     15391@article{Harada2004,
     15392  author = {Harada, K. and Akashi, T. and Togawa, Y. and Matsuda, T.},
     15393  title = {Double-biprism electron interferometry},
     15394  journal = {Applied Physics Letters},
     15395  year = {2004},
     15396  volume = {84},
     15397  number = {17},
     15398  pages = {3219-3231}
     15399}
     15400@article{Mooney2007,
     15401  author = {Mooney, P..},
     15402  title = {Optimization of Image Collection for Cellular Electron Microscopy},
     15403  journal = {Methods in cell biology},
     15404  year = {2007},
     15405  volume = {79},
     15406  pages = {661-719}
     15407}
     15408@article{Brarnova1999,
     15409  author = {Baranova, L.A. and Yavor, S.Y.},
     15410  title = {The optics of round and multipole electrostatic lenses},
     15411  journal = {Advances in electronics and electron physics},
     15412  year = {2004},
     15413  volume = {76},
     15414  pages = {1-207}
     15415}
     15416@article{Kuramochi2008,
     15417  author = {Kurmochi, K. and Yamazaki, T. and Kotaka, Y. and Kikuchi, Y. and Hashimoto, I. and Watanabe, K.},
     15418  title = {Measurement of twofold astigmatism of probe-forming lens using low-order zone-axis ronchigram},
     15419  journal = {Ultramicroscopy},
     15420  year = {2008},
     15421  volume = {108},
     15422  pages = {339-345}
     15423}
     15424@article{Kuramochi2009,
     15425  author = {Kurmochi, K. and Yamazaki, T. and Kotaka, Y. and Ohtsuka, M. and Hashimoto, I. and Watanabe, K.},
     15426  title = {Effect of chromatic aberration on atomic-resolved spherical aberration corrected STEM images},
     15427  journal = {Ultramicroscopy},
     15428  year = {2009},
     15429  volume = {110},
     15430  pages = {36-42}
     15431}
     15432@article{Crewe1980,
     15433  author = {Crewe, A.V.},
     15434  title = {The physics of the high-resolution scanning microscope},
     15435  journal = {Rep. Prog. Phys.},
     15436  year = {1980},
     15437  volume = {43},
     15438  pages = {621-642}
     15439}
     15440@article{Haider2008,
     15441  author = {Haider, M. and Mueller, H. and Uhlemann, S.},
     15442  title = {Present and Future Hexapole Aberration Correctors for High-Resolution Electron Microscopy},
     15443  journal = {Advances in Imaging and Electron Physics},
     15444  year = {2008},
     15445  volume = {153},
     15446  pages = {43-119}
     15447}
     15448@article{Pogany1968,
     15449  author = {Pogany, A.P. and Turner, P.S.},
     15450  title = {Reciprocity in Electron Diffraction and Microscopy},
     15451  journal = {Acta Crystallography A},
     15452  year = {1968},
     15453  volume = {24},
     15454  pages = {103-109}
     15455}
     15456@article{Sasaki2010,
     15457  author = {Sasaki, T. and Sawada, H. and Hosokawa, F. and Kohno, Y. and Tomita, T. and Kaneyama, T. and Kondo, Y. and Kimoto, K. and Sato, Y. and Suenaga, K.},
     15458  title = {Performance of low-voltage STEM/TEM with delta corrector and cold field emission gun},
     15459  journal = {Journal of Electron Microscopy},
     15460  year = {2010}
     15461}
     15462@article{Muller2008,
     15463  author = {Muller, D.A. and Fitting Kourkoutis, L. and Murfitt, M. and Song, J.H. and Hwang, H.Y. and Silcox, J. and Dellby, N. and Krivanek, O.L.},
     15464  title = {Atomic-Scale Chemical Imaging of Composition and Bonding by Aberration-Corrected Microscopy},
     15465  journal = {Science},
     15466  year = {2008},
     15467  volume = {319},
     15468  pages = {1073-1076}
     15469}
     15470@article{Meyer2008,
     15471  author = {Meyer, J.C. and Girit, C.O. and Crommie, M.F. and Zettl, A.},
     15472  title = {Imaging and dynamics of light atoms and molecules on graphene},
     15473  journal = {Nature},
     15474  year = {2008},
     15475  volume = {454},
     15476  pages = {319-323}
     15477}
     15478@article{Muller2006,
     15479  author = {Muller, D.A. and Kirkland, E.J. and Thomas, M.G. and Grazul, J.L. and Fitting, L. and Weyland, M.},
     15480  title = {Room design for high-performance electron microscopy},
     15481  journal = {Ultramicroscopy},
     15482  year = {2006},
     15483  volume = {106},
     15484  pages = {1033-1040}
     15485}
     15486@article{Xing2009,
     15487  author = {Xing, Q. and Lograsso, T.A.},
     15488  title = {A rapid method to correct objective lens astigmatism in a TEM},
     15489  journal = {Ultramicroscopy},
     15490  year = {2009},
     15491  volume = {109},
     15492  pages = {287-290}
     15493}
     15494@article{Nellist1998a,
     15495  author = {Nellist, P.D. and Pennycook, S.J.},
     15496  title = {Accurate structure determination from image reconstruction in {ADF} {STEM}},
     15497  journal = {Journal of Microscopy},
     15498  year = {1998},
     15499  volume = {1-2},
     15500  pages = {159-170}
     15501}
     15502@article{Schaffer2009,
     15503  author = {Schaffer, B. and Hohenester, U. and Truegler, A. and Hofer, F.},
     15504  title = {High-resolution surface plasmon imaging of gold nanoparticles by energy-filtered transmission electron microscopy},
     15505  journal = {Physical Review B},
     15506  year = {2009},
     15507  volume = {79},
     15508  pages = {041401}
     15509}
     15510@inproceedings{Rieger2008,
     15511  author = {Rieger, B. and Veen, G.N.A. van},
     15512  title = {Method to determine image sharpness and resolution
     15513in Scanning Electron Microscopy images},
     15514  year = {2008},
     15515  pages = {613-614},
     15516  month = {September 1-5},
     15517  editor = {Luysberg, M. and Tillmann, K. and Weirich, T.},
     15518  publisher = {Springer Verlag},
     15519  address = {Berline},
     15520  booktitle = {EMC 2008, Vol.1: Instrumentation and Methods}
     15521}
     15522@mastersthesis{Smith2009,
     15523  author = {Smith, S.C.},
     15524  title = {Improving single molecule
     15525fluorescence superresolution techniques},
     15526  year = {2009},
     15527  school = {Delft University of Technology}
     15528}
     15529@mastersthesis{Vroonland2010,
     15530  author = {Vroonland, S.},
     15531  title = {Superresolution Using Blinking Emitters},
     15532  year = {2010},
     15533  month = {June},
     15534  address = {Delft, The Netherlands},
     15535  school = {Delft University of Technology}
     15536}
     15537@article{Hell2009,
     15538  author = {Hell, S.W.},
     15539  title = {Microscopy and its focal switch},
     15540  journal = {Nature Methods},
     15541  year = {2009},
     15542  volume = {6},
     15543  pages = {24-32}
     15544}
     15545@article{Small2009,
     15546  author = {Small, A.R.},
     15547  title = {Theoretical Limits on Errors and Acquisition Rates in Localizing Switchable Fluorophores},
     15548  journal = {Biophysical Journal - Biophysical Letters},
     15549  year = {2009},
     15550  volume = {92},
     15551  number = {2},
     15552  pages = {L16-L18}
     15553}
     15554@article{Podczeck1997,
     15555  author = {Podczeck, F.},
     15556  title = {A shape factor to assess the shape of particles using image analysis},
     15557  journal = {Powder Technology},
     15558  year = {1997},
     15559  volume = {93},
     15560  pages = {47-53}
     15561}
     15562@article{Shaner2004,
     15563  author = {Shaner, N.C. and Campbell, R.E. and Steinbach, P.A. and Giepmans, B.N.G. and Palmer, A.E. and Tsien, R.Y.},
     15564  title = {Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein},
     15565  journal = {Nature Biotechnology},
     15566  year = {2004},
     15567  volume = {22},
     15568  number = {12},
     15569  pages = {1567-1672}
     15570}
     15571@article{Sader2010,
     15572  author = {Sader, K. and Brown, A. and Brydon, R. and Bleloch, A.},
     15573  title = {Quantitativ eanalysis of image contrast in phase contrast STEM for low dose imaging},
     15574  journal = {Ultramicroscopy},
     15575  year = {2010},
     15576  volume = {110},
     15577  pages = {1324-1331}
     15578}
     15579@article{Aert2010,
     15580  author = {Aert, s. van and Chen, J.H. and Dyck, D. van},
     15581  title = {Linear versus non-linear structural information limit in high-resolution transmission electron microscopy},
     15582  journal = {Ultramicroscopy},
     15583  year = {2010},
     15584  volume = {110},
     15585  pages = {1404-1410}
     15586}
     15587@article{Donzel2001,
     15588  author = {Donzel, Christian and Geissler, Matthias and Bernard, Andr\\\'e and Wolf, Heiko and Michel, Bruno and Hilborn, J\\\"ons and Delamarche, Emmanuel},
     15589  title = {{Hydrophilic Poly(dimethylsiloxane) Stamps for Microcontact Printing}},
     15590  journal = {{Advanced Materials}},
     15591  year = {2001},
     15592  volume = {{13}},
     15593  number = {{15}}
     15594}
     15595@article{Wang1997,
     15596  author = {Wang, Michelle D. and Yin, Hong and Landick, Robert and Gelles, Jeff and Block, Steven M.},
     15597  title = {{Stretching DNA with Optical Tweezers}},
     15598  journal = {{Biophysical Journal}},
     15599  year = {1997},
     15600  volume = {{72}},
     15601  number = {{3}},
     15602  pages = {{1335-1346}}
     15603}
     15604@article{Blanchard1999,
     15605  author = {Blanchard, Paul M.
     15606 Greenaway, Alan H.},
     15607  title = {{Simultaneous multiplane imaging with a distorted diffraction grating}},
     15608  journal = {{Applied Optics}},
     15609  year = {1999},
     15610  volume = {{38}},
     15611  number = {{32}},
     15612  pages = {{6692-6699}}
     15613}
     15614@article{Eversole2007,
     15615  author = {Eversole, D. and Luk'Yanchuk, B. and Ben-Yakar, A.},
     15616  title = {{Plasmonic laser nanoablation of silicon by the scattering of femtosecond pulses near gold nanospheres}},
     15617  journal = {{Applied Physics A}},
     15618  year = {2007},
     15619  volume = {{89}},
     15620  pages = {{283-291}}
     15621}
     15622@article{Dessinges2002,
     15623  author = {Dessinges, M. N. and Maier, B. and Zhang, Y. and Peliti, M. and Bensimon, D. and Croquette, V.},
     15624  title = {{Stretching Single Stranded DNA, a Model Polyelectrolyte}},
     15625  journal = {{Physical Review Letters}},
     15626  year = {2002},
     15627  volume = {{89}},
     15628  number = {{24}},
     15629  pages = {{248102-248106}}
     15630}
     15631@article{Taylor1990,
     15632  author = {Taylor, William H. and Hagerman, Paul J.},
     15633  title = {{Application of the Method of Phage T4 DNA Ligase-catalyzed Ring-closure to the Study of DNA Structure}},
     15634  journal = {{Journal of Molecular Biology}},
     15635  year = {1990},
     15636  volume = {{212}},
     15637  number = {{2}},
     15638  pages = {{363-376}}
     15639}
     15640@article{Uhlenbeck1930,
     15641  author = {Uhlenbeck, G.E. and Ornstein, L.S.},
     15642  title = {{On the Theory of the Brownian Motion}},
     15643  journal = {{Physical Review}},
     15644  year = {1930},
     15645  volume = {{36}}
     15646}
     15647@article{Yguerabide2001,
     15648  author = {Yguerabide, Juan and Yguerabide, Evangelina E.},
     15649  title = {{Resonance Light Scattering Particles as Ultrasensitive Labels for Detection of Analytes in a Wide Range of Applications}},
     15650  journal = {{Journal of Cellular Biochemistry Supplement}},
     15651  year = {2001},
     15652  volume = {{84}},
     15653  number = {{S37}},
     15654  pages = {{71-81}}
     15655}
     15656@article{Samuel2002,
     15657  author = {Samuel, Joseph and Sinha, Supurna},
     15658  title = {{Elasticity of semiflexible polymers}},
     15659  journal = {{Physical Review E}},
     15660  year = {2002},
     15661  volume = {{66}},
     15662  pages = {{050801}}
     15663}
     15664@article{Porschke1991,
     15665  author = {Porschke, Dietmar},
     15666  title = {{Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations}},
     15667  journal = {{Biophysical Chemistry}},
     15668  year = {1991},
     15669  volume = {{40}},
     15670  pages = {{169-179}}
     15671}
     15672@article{Schutz2000,
     15673  author = {Sch\\\"utz, Gerhard J. and Pastushenko, Vassili, Ph. and Gruber, Hermann J. and Knaus, Hans-G\\\"unter and Pragl, Bernt and Schindler, Hansgeorg},
     15674  title = {{3D Imaging of Individual Ion Channels in Live Cells at 40 nm Resolution}},
     15675  journal = {{Single Molecules}},
     15676  year = {2000},
     15677  volume = {{1}},
     15678  number = {{1}},
     15679  pages = {{25-31}}
     15680}
     15681@incollection{Vilfan2009,
     15682  author = {Vilfan, I.D. and Lipfert, J. and Koster, D.A. and Lemay, S.G. and Dekker, N.H.},
     15683  title = {{Magnetic Tweezers for Single-Molecule Experiments}},
     15684  year = {2009},
     15685  editor = {Hinterdorfer, P. and A., van Oijen},
     15686  publisher = {{Springer Science+Business Media}},
     15687  booktitle = {{Springer Handbook of Single-Molecule Biophysics}}
     15688}
     15689@article{Dvorak2003,
     15690  author = {Dvor\\\'ak, Zdenek and Pascussi, Jean-Marc and Modriansk\\\'y, Martin},
     15691  title = {{Approaches to Messenger RNA Detection - Comparison of Methods}},
     15692  journal = {{Biomedical Papers}},
     15693  year = {2003},
     15694  volume = {{147}},
     15695  number = {{2}},
     15696  pages = {{131-135}}
     15697}
     15698@article{Medalion2010,
     15699  author = {Medalion, Shlomi and Rappaport, Shay M. and Rabin, Yitzhak},
     15700  title = {{Coupling of twist and writhe in short DNA loops
     15701 }},
     15702  journal = {{The Journal of Chemical Physics}},
     15703  year = {2010},
     15704  volume = {{132}},
     15705  number = {{4}},
     15706  pages = {{045101}}
     15707}
     15708@article{Cherif2006,
     15709  author = {Cherif, Boutheina and Roget, Andr\\\'e and Villiers, Christian L. and Calemczuk, Roberto and Leroy, Vincent and Marche, Patrice N. and Livache, Thierry and Villiers, Marie-Bernadette},
     15710  title = {{Clinically Related Protein-Peptide Interactions Monitored in Real Time on Novel Peptide Chips by Surface Plasmon Resonance Imaging}},
     15711  journal = {{Clinical Chemistry}},
     15712  year = {2006},
     15713  volume = {{52}},
     15714  number = {{2}},
     15715  pages = {{255-262}}
     15716}
     15717@article{Gibson1991,
     15718  author = {Gibson, Sarah Frisken and Lanni, Frederick},
     15719  title = {{Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy}},
     15720  journal = {{Journal of the Optical Society of America A}},
     15721  year = {1991},
     15722  volume = {{8}},
     15723  number = {{10}},
     15724  pages = {{1601-1613}}
     15725}
     15726@misc{Bouchiat2007,
     15727  author = {Bouchiat, C.},
     15728  title = {{Spatial Constraint Corrections to the Elasticity of dsDNA Measured with Magnetic Tweezers}},
     15729  year = {2007}
     15730}
     15731@article{Bouchiat2006,
     15732  author = {Bouchiat, C.},
     15733  title = {{Entropic elasticity of double-strand DNA subject to simple spatial constraints}},
     15734  journal = {{Journal of Statistical Mechanics: Theory and Experiment}},
     15735  year = {2006},
     15736  number = {{03}},
     15737  pages = {{P03019}}
     15738}
     15739@article{Yoshinaga2002,
     15740  author = {Yoshinaga, Natsuhiko and Yoshikawa, Kenichi and Kidoaki, Satoru},
     15741  title = {{Multiscaling in a long semiflexible polymer chain in two dimensions}},
     15742  journal = {{Journal of Chemical Physics}},
     15743  year = {2002},
     15744  volume = {{116}},
     15745  number = {{22}}
     15746}
     15747@article{Sottas1999,
     15748  author = {Sottas, Pierre-Edouard and Larquet, Eric and Stasiak, Andrzej and Dubochet, Jacques},
     15749  title = {{Brownian Dynamics Simulation of DNA Condensation}},
     15750  journal = {{Biophysical Journal}},
     15751  year = {1999},
     15752  volume = {{77}},
     15753  pages = {{1858-1870}}
     15754}
     15755@article{Yamakawa1976a,
     15756  author = {Yamakawa, Hiromi and Fujii, Motoharu},
     15757  title = {{Statistical mechanics of helical wormlike chains. I. Differential equations and moments}},
     15758  journal = {{The Journal of Chemical Physics}},
     15759  year = {1976},
     15760  volume = {{64}},
     15761  number = {{12}},
     15762  pages = {{5222-5228}}
     15763}
     15764@article{Odijk1979,
     15765  author = {Odijk, Theo},
     15766  title = {{On the Ionic-Strength Dependence of the Intrinsic Viscosity of DNA}},
     15767  journal = {{Biopolymers}},
     15768  year = {1979},
     15769  volume = {{18}},
     15770  pages = {{3111-3113}}
     15771}
     15772@article{Sheppard1997,
     15773  author = {Sheppard, C. J. R. and T\\\"or\\\"ok, P.},
     15774  title = {{Effects of specimen refractive index on confocal imaging}},
     15775  journal = {{Journal of Microscopy}},
     15776  year = {1997},
     15777  volume = {{185}},
     15778  number = {{3}},
     15779  pages = {{366-374}}
     15780}
     15781@article{Vologodskii1994,
     15782  author = {Vologodskii, Alexander},
     15783  title = {{DNA Extension under the Action of an External Force}},
     15784  journal = {{Macromolecules}},
     15785  year = {1994},
     15786  volume = {{27}},
     15787  number = {{20}},
     15788  pages = {{5623-5625}}
     15789}
     15790@article{Rayleigh1919,
     15791  author = {Rayleigh, Lord},
     15792  title = {{On the problem of random vibrations, and of random flights in one, two, or three dimensions}},
     15793  journal = {{Philosophical Magazine}},
     15794  year = {1919},
     15795  volume = {{37}},
     15796  pages = {{321-347}}
     15797}
     15798@article{Lukic2007,
     15799  author = {Luki\\\c{c}, Branimir and Jeney, Sylvia and Sviben, Zeljko and Kulik, Andrzej and Florin, Ernst-Ludwig and Forr\\\'o, L\\\'aszl\\\'o},
     15800  title = {{Motion of a colloidal particle in an optical trap}},
     15801  journal = {{Physical Review E}},
     15802  year = {2007},
     15803  volume = {{76}},
     15804  pages = {{011112}}
     15805}
     15806@article{Storm2003a,
     15807  author = {Storm, C. and Nelson, P. C.},
     15808  title = {{The bend stiffness of S-DNA}},
     15809  journal = {{Europhysics Letters (EPL)}},
     15810  year = {2003},
     15811  volume = {{62}},
     15812  number = {{5}},
     15813  pages = {{760-766}}
     15814}
     15815@article{Odijk1977,
     15816  author = {Odijk, Theo},
     15817  title = {{Polyelectrolytes near the Rod Limit}},
     15818  journal = {{Journal of Polymer Science: Polymer Physics Edition}},
     15819  year = {1977},
     15820  volume = {{15}},
     15821  pages = {{477-483}}
     15822}
     15823@article{Beausang2007b,
     15824  author = {Beausang, John F. and Nelson, Philip C.},
     15825  title = {{Diffusive hidden Markov model characterization of DNA looping dynamics in tethered particle experiments}},
     15826  journal = {{Physical Biology}},
     15827  year = {2007}
     15828}
     15829@article{Fixman1973,
     15830  author = {Fixman, Marshall and Alben, Richard},
     15831  title = {{Polymer conformational statistics. I. Probability distribution}},
     15832  journal = {{The Journal of Chemical Physics}},
     15833  year = {1973},
     15834  volume = {{58}},
     15835  number = {{4}},
     15836  pages = {{1553-1558}}
     15837}
     15838@article{Gupta1993,
     15839  author = {Gupta, Anshu M. and Edwards, Sam F.},
     15840  title = {{Mean-field theory of phase transitions in liquid-crystalline polymers}},
     15841  journal = {{Journal of Chemical Physics}},
     15842  year = {1993},
     15843  volume = {{98}},
     15844  number = {{2}},
     15845  pages = {{1588-1596}}
     15846}
     15847@article{Butler2005,
     15848  author = {Butler, Jason E. and Shaqfeh, Eric S.G.},
     15849  title = {{Brownian dynamics simulations of a flexible polymer chain which includes continuous resistance and multibody hydrodynamic interactions}},
     15850  journal = {{The Journal of Chemical Physics}},
     15851  year = {2005},
     15852  volume = {{122}}
     15853}
     15854@article{Csiszar1991,
     15855  author = {Csiszar, Imre},
     15856  title = {{Why Least Squares and Maximum Entropy? An Axiomatic Approach to Inference for Linear Inverse Problems}},
     15857  journal = {{The Annals of Statistics}},
     15858  year = {1991},
     15859  volume = {{19}},
     15860  number = {{4}},
     15861  pages = {{2032-2066}}
     15862}
     15863@inproceedings{Dietrich2006,
     15864  author = {Dietrich, Heidelinde R.C. and Young, Ian T. and Garini, Yuval},
     15865  title = {{Advances in the Development of a Novel Method to be used in Proteomics using Gold Nanobeads}},
     15866  year = {2006},
     15867  volume = {{6092}},
     15868  editor = {Enderlein, J\\\"org and Gryczynski, Zygmunt K.},
     15869  publisher = {{Proceedings of SPIE}},
     15870  booktitle = {{Ultrasensitive and Single-Molecule Detection Technologies}}
     15871}
     15872@inproceedings{Dietrich2007,
     15873  author = {Dietrich, Heidelinde R.C. and Vermolen, Bart J. and Rieger, Bernd and Young, Ian T. and Garini, Yuval},
     15874  title = {{A New Optical Method for Characterizing Single Molecule Interactions based on Dark Field Microscopy}},
     15875  year = {2007},
     15876  volume = {{6444}},
     15877  pages = {644403-1 - 64403-8},
     15878  editor = {Enderlein, J\\\"org and Gryczynski, Zygmunt K.},
     15879  publisher = {{Proceedings of SPIE}},
     15880  booktitle = {{Ultrasensitive and Single-Molecule Detection Technologies II}}
     15881}
     15882@article{Torok1996,
     15883  author = {T\\\"or\\\"ok, P. and Sheppard, C. J. R. and Laxzik, Z.},
     15884  title = {{Dark-field and differential phase contrast imaging modes in confocal microscopy using a half-aperture stop}},
     15885  journal = {{Optik}},
     15886  year = {1996},
     15887  volume = {{103}},
     15888  number = {{3}},
     15889  pages = {{101-106}}
     15890}
     15891@article{Dietrich2002,
     15892  author = {Dietrich, Chrisian and Yang, Bing and Fujiwara, Takahiro and Kusumi, Akihiro and Jacobson, Ken},
     15893  title = {{Relationship of Lipid Rafts to Transient Confinement Zones Detected by Single Particle Tracking}},
     15894  journal = {{Biophysical Journal}},
     15895  year = {2002},
     15896  volume = {{82}},
     15897  number = {{1}},
     15898  pages = {{274-284}}
     15899}
     15900@article{Schafer1991,
     15901  author = {Schafer, Dorothy A. and Gelles, Jeff and Sheetz, Michael P. and Landick, Robert},
     15902  title = {{Transcription by single molecules of RNA polymerase observed by light microscopy}},
     15903  journal = {{Nature}},
     15904  year = {1991},
     15905  volume = {{352}},
     15906  number = {{6334}},
     15907  pages = {{444-448}}
     15908}
     15909@book{Mazo2002,
     15910  author = {Mazo, Robert M.},
     15911  title = {{Brownian Motion: fluctuations, dynamics, and applications}},
     15912  year = {2002},
     15913  publisher = {{Clarendon Press}},
     15914  series = {{International series of monographs on physics}},
     15915  address = {{Oxford}}
     15916}
     15917@article{Deng2009,
     15918  author = {Deng, Yi. and Shaevitz, Joshua W.},
     15919  title = {{Effect of aberration on height calibration in three-dimensional localization-base microscoyp and particle tracking}},
     15920  journal = {{Applied Optics}},
     15921  year = {2009},
     15922  volume = {{48}},
     15923  number = {{10}},
     15924  pages = {{1886-1890}}
     15925}
     15926@article{Han2006,
     15927  author = {Han, Y. and Alsayed, A.M. and Nobili, M. and Zhang, J. and Lubensky, T.C. and Yodh, A.G.},
     15928  title = {{Brownian Motion of an Ellipsoid}},
     15929  journal = {{Science}},
     15930  year = {2006},
     15931  volume = {{314}}
     15932}
     15933@article{Dietrich2009,
     15934  author = {Dietrich, Heidelinde R. C. and Rieger, Bernd and Wiertz, Frank G.M. and de Groote, Frederik H. and Heering, Hendrik A. and Young, Ian T. and Garini, Yuval},
     15935  title = {{Tethered Particle Motion Mediated by Scattering from Gold Nanoparticles and Darkfield Microscopy}},
     15936  journal = {{Journal of Nanophotonics}},
     15937  year = {2009},
     15938  volume = {{3}},
     15939  pages = {{031795}}
     15940}
     15941@article{Shaevitz2007,
     15942  author = {Shaevitz, Joshua W. and Fletcher, Daniel A.},
     15943  title = {{Enhanced three-dimensional deconvolution microscopy using a measured depth-varying point-spread function}},
     15944  journal = {{Journal of the Optical Society of America A}},
     15945  year = {2007},
     15946  volume = {{24}},
     15947  number = {{9}},
     15948  pages = {{2622-2627}}
     15949}
     15950@book{Doi1986,
     15951  author = {Doi, M. and Edwards, S.F. },
     15952  title = {{The Theory of Polymer Dynamics}},
     15953  year = {1986},
     15954  publisher = {{Oxford University Press}},
     15955  address = {{New York}}
     15956}
     15957@article{Dhar2002,
     15958  author = {Dhar, Abhishek and Chaudhuri, Debasish},
     15959  title = {{Triple Minima in the Free Energy of Semiflexible Polymers}},
     15960  journal = {{Physical Review Letters}},
     15961  year = {2002},
     15962  volume = {{89}},
     15963  number = {{6}},
     15964  pages = {{065502}}
     15965}
     15966@article{Watkins2004,
     15967  author = {Watkins, Lucas P. and Yang, Haw},
     15968  title = {{Information Bounsd and Optimal Analysis of Dynamic Single Molecule Measurements}},
     15969  journal = {{Biophysical Journal}},
     15970  year = {2004},
     15971  volume = {{86}},
     15972  number = {{6}},
     15973  pages = {{4015-4029}}
     15974}
     15975@article{Elburg2007,
     15976  author = {Elburg, H.J. van and Kuypers, L.C. and Decraemer, W.F. and Dirckx, J.J.J.},
     15977  title = {{Improved correction of axial geometrical distortion in index-mismatched fluorescent confocal microscopic images using high-aperture objective lenses}},
     15978  journal = {{Journal of Microscopy}},
     15979  year = {2007},
     15980  volume = {{228}},
     15981  number = {{1}},
     15982  pages = {{45-54}}
     15983}
     15984@phdthesis{Li2006,
     15985  author = {Li, Jinyu and Nelson, Philip C. and Betterton, M.D.},
     15986  title = {{DNA entropic elasticity for short molecules attached to beads}},
     15987  year = {2006}
     15988}
     15989@book{Cohen1988,
     15990  author = {Cohen, A. Clifford and Whitten, Betty Jones},
     15991  title = {{Parameter estimation in reliability and life span models}},
     15992  year = {1988},
     15993  volume = {{96}},
     15994  publisher = {{Marcel Dekker, Inc}},
     15995  series = {{Statistics: Textbooks and monographs}},
     15996  address = {{New York}}
     15997}
     15998@article{Cocco2002,
     15999  author = {Cocco, S. and Marko, J.F. and Monasson, R.},
     16000  title = {{Theoretical models for single-molecule DNA and RNA experiments: from elasticity to unzipping}},
     16001  journal = {{Comptes rendus de l'Academie des Sciences Physique}},
     16002  year = {2002},
     16003  volume = {{3}},
     16004  pages = {{569-584}}
     16005}
     16006@article{Cocco2003,
     16007  author = {Cocco, S. and Marko, J.F. and Monasson, R. and Sarkar, A. and Yan, J.},
     16008  title = {{Force-extension behavior of folding polymers}},
     16009  journal = {{The European Physical Journal E}},
     16010  year = {2003},
     16011  volume = {{10}},
     16012  pages = {{249-263}}
     16013}
     16014@article{Hughes2001,
     16015  author = {Hughes, Timothy R. and Shoemaker, Daniel D.},
     16016  title = {{DNA microarrays for expression profiling}},
     16017  journal = {{Current Opinion in Chemical Biology}},
     16018  year = {2001},
     16019  volume = {{5}},
     16020  pages = {{21-25}}
     16021}
     16022@article{Tinland1997,
     16023  author = {Tinland, Bernard and Pluen, Alain and Sturm, Jean and Weill, Gilbert},
     16024  title = {{Persistence Length of Single-Stranded DNA}},
     16025  journal = {{Macromolecules}},
     16026  year = {1997},
     16027  volume = {{30}},
     16028  number = {{19}},
     16029  pages = {{5763-5765}}
     16030}
     16031@article{Massey1951,
     16032  author = {Massey, Frank J., Jr.},
     16033  title = {{The Kolmogorov-Smirnov test for goodness of fit}},
     16034  journal = {{Journal of the American Statistical Association}},
     16035  year = {1951},
     16036  volume = {{46}},
     16037  pages = {{68-78}}
     16038}
     16039@article{Burkhardt1993,
     16040  author = {Burkhardt, Theodore W.},
     16041  title = {{Semiflexible polymer in the half plane and statistics of the integral of a Brownian curve}},
     16042  journal = {{Journal of Physics A: Mathematical and General}},
     16043  year = {1993},
     16044  volume = {{26}},
     16045  pages = {{L1157-L1162}}
     16046}
     16047@article{Stepanow2002,
     16048  author = {Stepanow, S. and Sch\\\"utz, G. M.},
     16049  title = {{The distribution function of a semiflexible polymer and random walks with constraints}},
     16050  journal = {{Europhysics Letters (EPL)}},
     16051  year = {2002},
     16052  volume = {{60}},
     16053  number = {{4}},
     16054  pages = {{546-551}}
     16055}
     16056@article{Smith1992,
     16057  author = {Smith, Steven B. and Finzi, Laura and Bustamante, Carlos},
     16058  title = {{Direct Mechanical Measurement of the Elasticity of Single DNA Molecules by Using Magnetic Beads}},
     16059  journal = {{Science}},
     16060  year = {1992},
     16061  volume = {{258}},
     16062  number = {{5085}},
     16063  pages = {{1122-1126}}
     16064}
     16065@article{Bao2002,
     16066  author = {Bao, Paul and Frutor, Anthony G. and Greef, Charles and Lahiri, Joydeep and Muller, Uwe and Peterson, Todd C. and Warden, Laurence and Xie, Xinying},
     16067  title = {{High-Sensitivity Detection of DNA Hybridization on Microarrays Using Resonance Light Scattering}},
     16068  journal = {{Analytical Chemistry}},
     16069  year = {2002},
     16070  volume = {{74}},
     16071  number = {{8}},
     16072  pages = {{1792-1979}}
     16073}
     16074@article{Baumann1997,
     16075  author = {Baumann, Christoph G. and Smith, Steven B. and Bloomfield, Victor A. and Bustamante, Carlos},
     16076  title = {{Ionic effects on the elasticity of single DNA molecules}},
     16077  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16078  year = {1997},
     16079  volume = {{94}},
     16080  pages = {{6185-6190}}
     16081}
     16082@article{Vandenberg1991,
     16083  author = {Vandenberg, Elaine T. and Bertilsson, Lars and Liedberg, Bo and Uvdal, Kajsa and Erlandsson, Ragnar and Elwing, Hans and Lundstrom, Ingemar},
     16084  title = {{Structure of 3-aminopropyl triethoxy silane on silicon oxide}},
     16085  journal = {{Journal of Colloid and Interface Science}},
     16086  year = {1991},
     16087  volume = {{147}},
     16088  number = {{1}},
     16089  pages = {{103-118}}
     16090}
     16091@article{Blumberg2005,
     16092  author = {Blumberg, Seth and Gajraj, Arivalagan and Pennington, Matthew W.},
     16093  title = {{Three-Dimensional Characterization of Tethered Microspheres by Total Internal Reflection Fluorescence Microscopy}},
     16094  journal = {{Biophysical Journal}},
     16095  year = {2005},
     16096  volume = {{89}},
     16097  pages = {{1272-1281}}
     16098}
     16099@misc{Neumann2001,
     16100  author = {Neumann, Richard M.},
     16101  title = {{Entropic Elasticity of Weakly Perturbed Polymers}},
     16102  year = {2001},
     16103  pages = {11},
     16104  month = {January 22, 2001},
     16105  publisher = {{The Energy Institute, The Pennsylvania State University}}
     16106}
     16107@article{Ommering2010,
     16108  author = {van Ommering, Kim and Somers, Philip A. and Koets, Marjo and Schleipen, Jean J.H.B. and van Ijzendoorn, Leo J. and Prins, Menno W.J.},
     16109  title = {{Mobility and height detection of particle labels in an optical evanescent wave biosensor with single-label resolution}},
     16110  journal = {{Journal of Physics D: Applied Physics}},
     16111  year = {2010},
     16112  volume = {{43}},
     16113  number = {{15}},
     16114  pages = {{155501}}
     16115}
     16116@article{Heaton2001,
     16117  author = {Heaton, Richard J. and Peterson, Alexander W. and Georgiadis, Rosina M.},
     16118  title = {{Electrostatic surface plasmon resonance: Direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches}},
     16119  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16120  year = {2001},
     16121  volume = {{98}},
     16122  number = {{7}},
     16123  pages = {{3701-3704}}
     16124}
     16125@article{Gobush1972,
     16126  author = {Gobush, William and Yamakawa, Hiromi and Stockmayer, W. H. and Magee, W. S.},
     16127  title = {{Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior}},
     16128  journal = {{The Journal of Chemical Physics}},
     16129  year = {1972},
     16130  volume = {{57}},
     16131  number = {{7}},
     16132  pages = {{2839-2843}}
     16133}
     16134@article{Henderson2001,
     16135  author = {Henderson, Michael and Meyer, Mary C.},
     16136  title = {{Exploring the Confidence Interval for a Binomial Parameter in a First Course in Statistical Computing}},
     16137  journal = {{The American Statistician}},
     16138  year = {2001},
     16139  volume = {{55}},
     16140  number = {{4}},
     16141  pages = {{337-344}}
     16142}
     16143@article{Winkler1994,
     16144  author = {Winkler, Roland G. and Reineker, Peter and Harnau, Ludger},
     16145  title = {{Models and equilibrium properties of stiff molecular chains}},
     16146  journal = {{journal of Chemical Physics}},
     16147  year = {1994},
     16148  volume = {{101}},
     16149  number = {{9}},
     16150  pages = {{8119-8129}}
     16151}
     16152@article{William1972,
     16153  author = {William, Gobush and Hiromi, Yamakawa and Stockmayer, W. H. and Magee, W. S.},
     16154  title = {{Statistical Mechanics of Wormlike Chains. I. Asymptotic Behavior}},
     16155  journal = {{The Journal of Chemical Physics}},
     16156  year = {1972},
     16157  volume = {{57}},
     16158  number = {{7}},
     16159  pages = {{2839-2843}}
     16160}
     16161@article{Peterlinz1997,
     16162  author = {Peterlinz, Kevin A. and Georgiadis, Rosina M. and Herne, Tonya M. and Tarlov, Michael J.},
     16163  title = {{Observation of Hybridization and Dehybridization of Thiol-Tethered DNA Using Two-Color Surface Plasmon Resonance Spectroscopy}},
     16164  journal = {{Journal of the American Chemical Society}},
     16165  year = {1997},
     16166  volume = {{119}},
     16167  pages = {{3401-3402}}
     16168}
     16169@article{Morriss2010,
     16170  author = {Morriss-Andrews, Alex and Rottler, Joerg and Plotkin, Steven S.},
     16171  title = {{A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality}},
     16172  journal = {{The Journal of Chemical Physics}},
     16173  year = {2010},
     16174  volume = {{132}},
     16175  number = {{3}},
     16176  pages = {{035105}}
     16177}
     16178@article{Chandrasekhar1943,
     16179  author = {Chandrasekhar, S.},
     16180  title = {{Stochastic Problems in Physics and Astronomy}},
     16181  journal = {{Revieuws of Modern Physics}},
     16182  year = {1943},
     16183  volume = {{15}},
     16184  number = {{1}},
     16185  pages = {{2-87}}
     16186}
     16187@inproceedings{Ram2005,
     16188  author = {Ram, Sripad and Ward, E. Sally and Ober, Raimond J.},
     16189  title = {{How accurately can a single molecule be localized in three dimensions using a fluorescence microscope?}},
     16190  year = {2005},
     16191  volume = {{5699}},
     16192  pages = {426-435},
     16193  series = {{Proceedings of SPIE}},
     16194  booktitle = {{Imaging, Manipulation and Analysis of Biomolecule and Cells: Fundamentals and Applications III}}
     16195}
     16196@book{Papoulis1991,
     16197  author = {Papoulis, Athanasios},
     16198  title = {{Probability, random variables, and stochastic processes}},
     16199  year = {1991},
     16200  publisher = {{McGraw-Hill}},
     16201  series = {{McGraw-Hill series in electrical engineering, Communications and signal processing}},
     16202  address = {{Singapore}},
     16203  edition = {{Third edition}}
     16204}
     16205@inproceedings{Ram2007,
     16206  author = {Ram, Sripad and Chao, Jerry and Prabhat, Prashant and Ward, E. Sally and Ober, Raimond J.},
     16207  title = {{A novel approach to determining the three-dimensional location of microscopic objects with applications to 3D particle tracking}},
     16208  year = {2007},
     16209  volume = {{6443}},
     16210  pages = {64430D},
     16211  editor = {Conchello, Jose-Angel and Cogswell, Carol J. and Wilson, Tony},
     16212  publisher = {{Proceedings of SPIE}},
     16213  booktitle = {{Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIV}}
     16214}
     16215@article{Wu2005,
     16216  author = {Wu, Mingming and Roberts, John W. and Buckley, Mark},
     16217  title = {{Three-dimensional fluorescent particle tracking at micron-scale using a single camera}},
     16218  journal = {{Experiments in Fluids}},
     16219  year = {2005},
     16220  volume = {{38}},
     16221  pages = {{461-465}}
     16222}
     16223@article{Maier2000,
     16224  author = {Maier, Berenike and Bensimon, David and Croquette, Vincent},
     16225  title = {{Replication by a single DNA polymerase of a stretched single-stranded DNA}},
     16226  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16227  year = {2000},
     16228  volume = {{97}},
     16229  number = {{22}},
     16230  pages = {{12002-12007}}
     16231}
     16232@misc{Odijk2005,
     16233  author = {Odijk, Theo},
     16234  title = {{Note on DNA grafted to a surface (experiments Heidi Dietrich, TU Delft)}},
     16235  year = {2005},
     16236  month = {August 4, 2005}
     16237}
     16238@article{Zimm1956,
     16239  author = {Zimm, Bruno H.},
     16240  title = {{Dynamics of Polymer Molecules in Dilute Solution: Viscoelasticity, Flow Birefringence and Dielectric Loss}},
     16241  journal = {{The Journal of Chemical Physics}},
     16242  year = {1956},
     16243  volume = {{24}},
     16244  number = {{2}},
     16245  pages = {{269-278}}
     16246}
     16247@article{Sadr2007,
     16248  author = {Sadr, Reza and Hohenegger, Christel and Li, Haifeng and Mucha, Peter J. and Yoda, Minami},
     16249  title = {{Diffusion-induced bias in near-wall velocimetry}},
     16250  journal = {{Journal of Fluid Mechanics}},
     16251  year = {2007},
     16252  volume = {{577}},
     16253  pages = {{443-456}}
     16254}
     16255@article{Qian2000b,
     16256  author = {Qian, Hong},
     16257  title = {{Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials}},
     16258  journal = {{Biophysical Journal}},
     16259  year = {2000},
     16260  volume = {{79}},
     16261  number = {{1}},
     16262  pages = {{137-143}}
     16263}
     16264@article{Pirrung2002,
     16265  author = {Pirrung, Michael C.},
     16266  title = {{How to Make a DNA Chip}},
     16267  journal = {{Angewandte Chemie International Edition}},
     16268  year = {2002},
     16269  volume = {{41}},
     16270  number = {{8}},
     16271  pages = {{1276-1289}}
     16272}
     16273@article{Marko2003,
     16274  author = {Marko, John F. and Cocco, Simona},
     16275  title = {{The micromechanics of DNA}},
     16276  journal = {{Physics World}},
     16277  year = {2003},
     16278  volume = {{16}},
     16279  number = {{3}}
     16280}
     16281@article{Qian2000a,
     16282  author = {Qian, Hong},
     16283  title = {{A mathematical analysis for the Brownian dynamics of a DNA tether}},
     16284  journal = {{Journal of Mathematical Biology}},
     16285  year = {2000},
     16286  volume = {{41}},
     16287  number = {{4}},
     16288  pages = {{331-340}}
     16289}
     16290@misc{Marko2005,
     16291  author = {Marko, J.F.},
     16292  title = {{Introduction to Single-DNA Micromechanics}},
     16293  year = {2005},
     16294  pages = {63},
     16295  month = {June 2, 2005},
     16296  publisher = {{Department of Physics, University of Illinois at Chicago}}
     16297}
     16298@article{Schaefer1980,
     16299  author = {Schaefer, D.W. and Joanny, J.F. and Pincus, P.},
     16300  title = {{Dynamics of Semiflexible Polymers in Solution}},
     16301  journal = {{Macromolecules}},
     16302  year = {1980},
     16303  volume = {{13}},
     16304  number = {{5}},
     16305  pages = {{1280-1289}}
     16306}
     16307@article{Zurla2006,
     16308  author = {Zurla, C. and Franzini, A. and Galli, G. and Dunlap, D. D. and Lewis, D. E. A. and Adhya, S. and Finzi, L.},
     16309  title = {{Novel tethered particle motion analysis of CI protein-mediated DNA looping in the regulation of bacteriophage lambda}},
     16310  journal = {{Journal of Physics: Condensed Matter}},
     16311  year = {2006},
     16312  volume = {{18}},
     16313  pages = {{S225-S234}}
     16314}
     16315@article{Prabhat2007,
     16316  author = {Prabhat, Prashant and Gan, Zhuo and Chao, Jerry and Ram, Sripad and Vaccaro, Carlos and Gibbons, Steven and Ober, Raimond J. and Ward, E. Sally},
     16317  title = {{Elucidation of intracellular recycling pathways leading to exocytosis of the Fc receptor, FcRn, by using multifocal plane microscopy}},
     16318  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16319  year = {2007},
     16320  volume = {{104}},
     16321  number = {{14}},
     16322  pages = {{5889-5894}}
     16323}
     16324@inproceedings{Prabhat2006,
     16325  author = {Prabhat, Prashant and Ram, Sripad and Ward, E. Sally and Ober, Raimond J.},
     16326  title = {{Simultaneous imaging of several focal planes in fluorescence microscopy for the study of cellular dynamics in 3D}},
     16327  year = {2006},
     16328  volume = {{6090}},
     16329  pages = {60900L},
     16330  editor = {Conchello, Jose-Angel and Cogswell, Carol J. and Wilson, Tony},
     16331  publisher = {{Proceedings of SPIE}},
     16332  booktitle = {{Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XIII}}
     16333}
     16334@article{Marko1994,
     16335  author = {Marko, John F. and Siggia, Eric D.},
     16336  title = {{Fluctuations and Supercoiling of DNA}},
     16337  journal = {{Science}},
     16338  year = {1994},
     16339  volume = {{265}},
     16340  number = {{5171}},
     16341  pages = {{506-508}}
     16342}
     16343@article{Marko1995,
     16344  author = {Marko, John F. and Siggia, Eric D.},
     16345  title = {{Stretching DNA}},
     16346  journal = {{Macromolecules}},
     16347  year = {1995},
     16348  volume = {{28}},
     16349  number = {{26}},
     16350  pages = {{8759-8770}}
     16351}
     16352@article{Winkler1992,
     16353  author = {Winkler, R.G. and Reineker, P.},
     16354  title = {{Finitie Size Distribution and Partition Functions of Gaussian Chains: Maximum Entropy Approach}},
     16355  journal = {{Macromolecules}},
     16356  year = {1992},
     16357  volume = {{25}},
     16358  number = {{24}},
     16359  pages = {{6891-6896}}
     16360}
     16361@article{Berciaud2005,
     16362  author = {Berciaud, St\\\'ephane and Cognet, Laurent and Tamarat, Philippe and Lounis, Brahim},
     16363  title = {{Observation of Intrinsic Size Effects in the Optical Response of Individual Gold Nanoparticles}},
     16364  journal = {{Nano Letters}},
     16365  year = {2005},
     16366  volume = {{5}},
     16367  number = {{3}},
     16368  pages = {{515-518}}
     16369}
     16370@article{Lahtinen2001,
     16371  author = {Lahtinen, J.M. and Hjelt, T. and Ala-Nissila, T. and Chvoj, Z.},
     16372  title = {{Diffusion of hard disks and rodlike molecules on surfaces}},
     16373  journal = {{Physical Review E}},
     16374  year = {2001},
     16375  volume = {{64}}
     16376}
     16377@article{Wong2006,
     16378  author = {Wong, Wesley P. and Halvorsen, Ken},
     16379  title = {{The effect of integration time on fluctuation measurements: calibrating an optical trap in the presence of motion blur}},
     16380  journal = {{Optics Express}},
     16381  year = {2006},
     16382  volume = {{14}},
     16383  number = {{25}},
     16384  pages = {{12517-12531}}
     16385}
     16386@article{Perkins1994,
     16387  author = {Perkins, Thomas T. and Quake, Stephern R. and Smith, Douglas E. and Chu, Steven},
     16388  title = {{Relaxation of a Single DNA Molecule Observed by Optical Microscopy}},
     16389  journal = {{Science}},
     16390  year = {1994},
     16391  volume = {{264}},
     16392  pages = {{822-826}}
     16393}
     16394@article{Lu2002,
     16395  author = {Lu, Yongjun and Weers, Brock and Stellwagen, Nancy C.},
     16396  title = {{DNA Persistencde Length Revisited}},
     16397  journal = {{Biopolymers}},
     16398  year = {2002},
     16399  volume = {{61}},
     16400  pages = {{261-275}}
     16401}
     16402@article{Laurens2009,
     16403  author = {Laurens, Niels and Bellamy, Stuart R. W. and Harms, August F. and Kovacheva, Yana S. and Halford, Stephen F. and Wuite, Gijs J. L.},
     16404  title = {{Dissecting protein-induced DNA looping dynamics in real time}},
     16405  journal = {{Nucleic Acids Research}},
     16406  year = {2009}
     16407}
     16408@article{Yguerabide1998b,
     16409  author = {Yguerabide, Juan and Yguerabide, Evangelina E.},
     16410  title = {{Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. II. Experimental Characterization}},
     16411  journal = {{Analytical Biochemistry}},
     16412  year = {1998},
     16413  volume = {{262}},
     16414  pages = {{157-176}}
     16415}
     16416@article{Capitanio2004,
     16417  author = {Capitanio, M. and Vanzi, F. and Broggio, C. and Cicchi, R. and Normanno, D. and Romano, G. and Sacconi, L. and Pavone, F.S.},
     16418  title = {{Exploring Molecular Motors and Switches at the Single-Molecule Level}},
     16419  journal = {{Microscopy Research and Technique}},
     16420  year = {2004},
     16421  volume = {{65}},
     16422  pages = {{194-204}}
     16423}
     16424@article{Sheppard2004,
     16425  author = {Sheppard, Colin J.R.},
     16426  title = {{Annular pupils, radial polarization, and superresolution}},
     16427  journal = {{Applied Optics}},
     16428  year = {2004},
     16429  volume = {{43}},
     16430  number = {{22}},
     16431  pages = {{4322-4327}}
     16432}
     16433@article{Zhu2006,
     16434  author = {Zhu, Qiang and Zeng, Jun and Triantafyllou, Michael S. and Yue, Dick K.P.},
     16435  title = {{Direct Numerical Simulation of Single-Molecule DNA by Cable Dynamics}},
     16436  journal = {{Journal of Microelectromechanical Systems}},
     16437  year = {2006},
     16438  volume = {{15}},
     16439  number = {{5}},
     16440  pages = {{1078-1087}}
     16441}
     16442@article{Strick1998,
     16443  author = {Strick, T.R. and Allemand, J.-F. and Bensimon, D. and Croquette, V.},
     16444  title = {{Behavior of Supercoiled DNA}},
     16445  journal = {{Biophysical Journal}},
     16446  year = {1998},
     16447  volume = {{74}},
     16448  pages = {{2016-2028}}
     16449}
     16450@article{Pouget2004,
     16451  author = {Pouget, Noelle and Dennis, Cynthia and Turlan, Catherine and Grigoriev, Mikhail and Chandler, Michael and Salome, Laurence},
     16452  title = {{Single-particle tracking for DNA tether length monitoring}},
     16453  journal = {{Nucleic Acids Research}},
     16454  year = {2004},
     16455  volume = {{32}},
     16456  number = {{9}}
     16457}
     16458@article{Saito1967,
     16459  author = {Saito, Nobuhiko and Takahashi, Kunihiko and Yunoki, Yasuo},
     16460  title = {{The Statistical Mechanical Theory of Stiff Chains}},
     16461  journal = {{Journal of the Physical Society of Japan}},
     16462  year = {1967},
     16463  volume = {{22}},
     16464  number = {{1}},
     16465  pages = {{219-226}}
     16466}
     16467@article{Smith1996,
     16468  author = {Smith, Steven B. and Cui, Yujia and Bustamante, Carlos},
     16469  title = {{Overstretching B-DNA: The Elastic Response of Individual Double-Stranded and Single-Stranded DNA Molecules}},
     16470  journal = {{Science}},
     16471  year = {1996},
     16472  volume = {{271}},
     16473  number = {{5250}},
     16474  pages = {{795-799}}
     16475}
     16476@article{Roeffaers2007,
     16477  author = {Roeffaers, Maarten B.J. and De Cremer, Gert and Uji-i, Hiroshi and Muls, Beniot and Sels, Bert F. and Jacobs, Pierre A. and De Schryver, Frans C. and De Vos, Dirk E. and Hofkens, Johan},
     16478  title = {{Single-molecule fluorescence spectroscopy in (bio)catalysis}},
     16479  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16480  year = {2007},
     16481  volume = {{104}},
     16482  number = {{31}},
     16483  pages = {{12603-12609}}
     16484}
     16485@book{Pluta1989,
     16486  author = {Pluta, Maksymilian},
     16487  title = {{Advanced Light Microscopy}},
     16488  year = {1989},
     16489  volume = {{2: Specialized Methods}},
     16490  publisher = {{Elsevier}},
     16491  address = {{Amsterdam}}
     16492}
     16493@book{Pluta1988,
     16494  author = {Pluta, Maksymilian},
     16495  title = {{Advanced Light Microscopy}},
     16496  year = {1988},
     16497  volume = {{1: Principles and Basic Properties}},
     16498  publisher = {{Elsevier}},
     16499  address = {{Amsterdam}}
     16500}
     16501@article{Broek2006,
     16502  author = {Broek, Bram van den and Vanzi, Francesco and Normanno, Davide and Pavone, Francesco S. and Wuite, Gijs J. L.},
     16503  title = {{Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI}},
     16504  journal = {{Nucleic Acids Research}},
     16505  year = {2006},
     16506  volume = {{34}},
     16507  number = {{1}},
     16508  pages = {{167-174}}
     16509}
     16510@article{Braslavsky2003,
     16511  author = {Braslavsky, Ido and Hebert, Benedict and Kartalov, Emil and Quake, Stephern R.},
     16512  title = {{Sequence Information can be Obtained from Single DNA Molecules}},
     16513  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16514  year = {2003},
     16515  volume = {{100}},
     16516  number = {{7}},
     16517  pages = {{3960-3964}}
     16518}
     16519@article{Ariel2003,
     16520  author = {Ariel, Gil and Andelman, David},
     16521  title = {{Persistence length of a strongly charged rodlike polyelectrolyte in the presence of salt}},
     16522  journal = {{Physical Review E}},
     16523  year = {2003},
     16524  volume = {{67}},
     16525  number = {{1}},
     16526  pages = {{011805-1-011805-11}}
     16527}
     16528@article{Yamakawa1972,
     16529  author = {Yamakawa, Hiromi and Stockmayer, W. H.},
     16530  title = {{Statistical Mechanics of Wormlike Chains. II. Excluded Volume Effects}},
     16531  journal = {{The Journal of Chemical Physics}},
     16532  year = {1972},
     16533  volume = {{57}},
     16534  number = {{7}},
     16535  pages = {{2843-2854}}
     16536}
     16537@article{Davidson1995,
     16538  author = {Davidson, John A.},
     16539  title = {{Arrays of Uniform Latex Spheres as Test Objects in Optical Microscopy}},
     16540  journal = {{Particle and Particle Systems Characterization}},
     16541  year = {1995},
     16542  volume = {{12}},
     16543  pages = {{173-178}}
     16544}
     16545@article{Huisken2004,
     16546  author = {Huisken, Jan and Swoger, Jim and Del Bene, Filippo and Wittbrodt, Joachim and Stelzer, Ernst H. K.},
     16547  title = {{Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy}},
     16548  journal = {{Science}},
     16549  year = {2004},
     16550  volume = {{305}},
     16551  number = {{5686}},
     16552  pages = {{1007-1009}}
     16553}
     16554@article{Goldman1967,
     16555  author = {Goldman, A.J. and Cox, R.G. and Brenner, H.},
     16556  title = {{Slow viscous motion of a sphere parallel to a plane wall - I Motion through a quiescent fluid}},
     16557  journal = {{Chemical Engineering Science}},
     16558  year = {1967},
     16559  volume = {{22}},
     16560  number = {{4}},
     16561  pages = {{637-651}}
     16562}
     16563@article{Maher2007,
     16564  author = {Maher, Brendan},
     16565  title = {{Spring theory}},
     16566  journal = {{Nature}},
     16567  year = {2007},
     16568  volume = {{448}},
     16569  pages = {{984-986}}
     16570}
     16571@article{Cui2008,
     16572  author = {Cui, Xiquan and Lee, Lap Man and Heng, Xin and Zhong, Weiwei and Sternberg, Paul W. and Psaltis, Demetri and Yang, Changhuei},
     16573  title = {{Lensless high-resolution on-chip optrofluidic microscopes for Caenorhabditis elegans and cell imaging}},
     16574  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16575  year = {2008},
     16576  volume = {{105}},
     16577  number = {{31}},
     16578  pages = {{10670-10675}}
     16579}
     16580@article{Hagerman1988,
     16581  author = {Hagerman, P.J.},
     16582  title = {{Flexibility of DNA}},
     16583  journal = {{Annual Review of Biophysics and BioEngineering}},
     16584  year = {1988},
     16585  volume = {{17}},
     16586  pages = {{265-286}}
     16587}
     16588@article{Vanzi2006,
     16589  author = {Vanzi, Francesco and Broggio, Chiara and Sacconi, Leonardo and Pavone, Francesco Saverio},
     16590  title = {{Lac repressor hinge flexibility and DNA looping: single molecule kinetics by tethered particle motion}},
     16591  journal = {{Nucleic Acids Research}},
     16592  year = {2006},
     16593  volume = {{34}},
     16594  number = {{12}},
     16595  pages = {{3409-3420}}
     16596}
     16597@article{Bronstein2009,
     16598  author = {Bronstein, I. and Israel, Y. and Kepten, E. and Mai, S. and Shav-Tal, Y. and Barkai, E. and Garini, Y.},
     16599  title = {{Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells}},
     16600  journal = {{Physical Review Letters}},
     16601  year = {2009},
     16602  volume = {{103}},
     16603  number = {{1}},
     16604  pages = {{018102}}
     16605}
     16606@article{Bawendi1985,
     16607  author = {Bawendi, M.G. and Freed, Karl F.},
     16608  title = {{A Wiener integral model for stiff polymer chains}},
     16609  journal = {{Journal of Chemical Physics}},
     16610  year = {1985},
     16611  volume = {{83}},
     16612  number = {{5}},
     16613  pages = {{2491}}
     16614}
     16615@article{Martin2002,
     16616  author = {Martin, Douglas S. and Forstner, Martin B. and K\\\"as, Josef A.},
     16617  title = {{Apparent Subdiffusion Inherent to Single Particle Tracking}},
     16618  journal = {{Biophysical Journal}},
     16619  year = {2002},
     16620  volume = {{83}},
     16621  number = {{4}},
     16622  pages = {{2109-2117}}
     16623}
     16624@article{Savelkoul2006,
     16625  author = {Savelkoul, Paul H.M. and Catsburg, Arnold and Mulder, Sije and Oostendorp, Ludo and Schirm, Jurjen and Wilke, Hans and van der Zanden, Adri G.M. and Noordhoek, Gerda T.},
     16626  title = {{Detection of Mycobacterium tuberculosis complex with Real Time PCR: Comparison of different primer-probe sets based on the IS6110 element}},
     16627  journal = {{Journal of Microbiological Methods}},
     16628  year = {2006},
     16629  volume = {{66}},
     16630  number = {{1}},
     16631  pages = {{177-180}}
     16632}
     16633@article{Bustamante2000,
     16634  author = {Bustamante, Carlos and Smith, Steven B. and Liphardt, Jan and Smith, Doug},
     16635  title = {{Single-molecule studies of DNA mechanics}},
     16636  journal = {{Current Opinion in Structural Biology}},
     16637  year = {2000},
     16638  volume = {{10}},
     16639  number = {{3}},
     16640  pages = {{279-285}}
     16641}
     16642@article{Bustamante2003,
     16643  author = {Bustamante, Carlos and Bryant, Zev and Smith, Steven B.},
     16644  title = {{Ten years of tension: single-molecule DNA mechanics}},
     16645  journal = {{Nature}},
     16646  year = {2003},
     16647  volume = {{421}},
     16648  pages = {{423-427}}
     16649}
     16650@article{Holtzer2007,
     16651  author = {Holtzer, L. and Meckel, T. and Schmidt, T.},
     16652  title = {{Nanometric three-dimensional tracking of individual quantom dots in cells}},
     16653  journal = {{Applied Physics Letters}},
     16654  year = {2007},
     16655  volume = {{90}},
     16656  pages = {{053902}}
     16657}
     16658@article{Huang2008,
     16659  author = {Huang, Bo and Wang, Wenqin and Bates, Mark and Zhuang, Xiaowei},
     16660  title = {{Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy}},
     16661  journal = {{Science}},
     16662  year = {2008},
     16663  volume = {{319}},
     16664  pages = {{810-813}}
     16665}
     16666@article{Lindner2009,
     16667  author = {Lindner, Moshe and Nir, Guy and Dietrich, Heidelinde R. C. and Young, Ian T. and Tauber, Elad and Bronshtein, I. and Altman, Liat and Garini, Yuval},
     16668  title = {{Studies of Single Molecules in their Natural Form}},
     16669  journal = {{Israel Journal of Chemistry}},
     16670  year = {2009},
     16671  volume = {{49}},
     16672  pages = {{283-291}}
     16673}
     16674@article{Wilhelm1996,
     16675  author = {Wilhelm, Jan and Frey, Erwin},
     16676  title = {{Radial Distribution Function of Semiflexible Polymers}},
     16677  journal = {{Physical Review Letters}},
     16678  year = {1996},
     16679  volume = {{77}},
     16680  number = {{12}},
     16681  pages = {{2581}}
     16682}
     16683@article{Clercx1992,
     16684  author = {Clercx, H.J.H. and Schram, P.P.J.M.},
     16685  title = {{Brownian particles in shear flow and harmonic potentials: A study of long-time tails}},
     16686  journal = {{Physical Review A}},
     16687  year = {1992},
     16688  volume = {{46}},
     16689  number = {{4}},
     16690  pages = {{1942-1950}}
     16691}
     16692@inproceedings{Subotic2004,
     16693  author = {Subotic, Nadja and van de Ville, Dimitri and Unser, Michael},
     16694  title = {{On the Feasability of Axial Tracking of a Fluorescent Nano-Particle Using a Defocusing Model}},
     16695  year = {2004},
     16696  volume = {{2}},
     16697  pages = {1231-1234},
     16698  booktitle = {{Proceedings IEEE International Symposium on Biomedical Imaging: From Macro to Nano}}
     16699}
     16700@article{Ebenstein2009,
     16701  author = {Ebenstein, Y. and Gassman, N. and Kim, S. and Antelman, J. and Kim, Y. and Ho, S. and Samuel, R. and Michalet, X. and Weiss, S.},
     16702  title = {Lighting Up Individual {DNA} Binding Proteins with Quantum Dots},
     16703  journal = {{Nano Letters}},
     16704  year = {2009},
     16705  volume = {{9}},
     16706  number = {{4}},
     16707  pages = {{1598-1603}}
     16708}
     16709@article{Harlepp2004,
     16710  author = {Harlepp, S. and Robert, J. and Darnton, N.C. and Chateney, D.},
     16711  title = {{Subnanometric measurements of evanescent wave penetration depth using total internal reflection microscopy combined with fluorescent correlation spectroscopy}},
     16712  journal = {{Applied Physics Letters}},
     16713  year = {2004},
     16714  volume = {{85}},
     16715  number = {{17}}
     16716}
     16717@inproceedings{Nguyen2000,
     16718  author = {Nguyen, Lam K. and Bravo-Zanoguera, Miguel and Kellner, Albert L. and Price, Jeffrey H.},
     16719  title = {{Magnification Corrected Optical Image Splitting for Simultaneous Multiplanar Acquisition}},
     16720  year = {2000},
     16721  volume = {{3921}},
     16722  pages = {31-40},
     16723  editor = {Farkas, Daniel L. and Leif, Robert C.},
     16724  publisher = {{Proceedings of SPIE}},
     16725  booktitle = {{Optical Diagnostics of Living Cells III}}
     16726}
     16727@article{Baslavsky2001,
     16728  author = {Baslavsky, Ido and Amit, Roee and Jaffar Ali, B.M. and Gileadi, Opher and Oppenheim, Amos and Stavans, Joel},
     16729  title = {{Objective-type dark-field illumination for scattering from microbeads}},
     16730  journal = {{Applied Optics}},
     16731  year = {2001},
     16732  volume = {{40}},
     16733  number = {{31}},
     16734  pages = {{5650-5667}}
     16735}
     16736@article{Stepanow2004,
     16737  author = {Stepanow, S.},
     16738  title = {{Statistical mechanics of semiflexible polymers}},
     16739  journal = {{The European Physical Journal B}},
     16740  year = {2004},
     16741  volume = {{39}},
     16742  number = {{4}},
     16743  pages = {{499-512}}
     16744}
     16745@article{Gelles1988,
     16746  author = {Gelles, Jeff and Schnapp, Bruce J. and Sheetz, Michael P.},
     16747  title = {{Tracking kinesin-driven movements with nanometric-scale precision}},
     16748  journal = {{Nature}},
     16749  year = {1988},
     16750  volume = {{331}},
     16751  number = {{6155}},
     16752  pages = {{450-453}}
     16753}
     16754@book{Rubinstein2006,
     16755  author = {Rubinstein, Michael and Colby, Ralph H.},
     16756  title = {{Polymer Physics}},
     16757  year = {2006},
     16758  publisher = {{Oxford University Press Inc.}},
     16759  address = {{New York}}
     16760}
     16761@article{Seol2007,
     16762  author = {Seol, Yeonee and Li, Jinyu and Nelson, Philip C. and Perkins, Thomas T. and Betterton, M.D.},
     16763  title = {{Elasticity of Short DNA Molecules: Theory and Experiment for Contour Lengths of 0.6-7 um}},
     16764  journal = {{Biophysical Journal}},
     16765  year = {2007},
     16766  volume = {{93}},
     16767  number = {{12}},
     16768  pages = {{4360-4373}}
     16769}
     16770@article{Cohen2007,
     16771  author = {Cohen, Adam E. and Moerner, W.E.},
     16772  title = {{Principle-component analysis of shape fluctuations of single DNA molecules}},
     16773  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16774  year = {2007},
     16775  volume = {{104}},
     16776  number = {{31}},
     16777  pages = {{12622-12627}}
     16778}
     16779@article{Saxton2007,
     16780  author = {Saxton, Michael J.},
     16781  title = {{A Biological Interpretation of Transient Anomalous Subdiffusion. I. Qualitative Model}},
     16782  journal = {{Biophysical Journal}},
     16783  year = {2007},
     16784  volume = {{92}},
     16785  number = {{4}},
     16786  pages = {{1178-1191}}
     16787}
     16788@article{Otto1994,
     16789  author = {Otto, Matthias and Eckert, Jochen and Vilgis, Thomas A.},
     16790  title = {{Persistence lengths of semiflexible chains - Methods and approximations}},
     16791  journal = {{Macromolecular Theory and Simulations}},
     16792  year = {1994},
     16793  volume = {{3}},
     16794  number = {{3}},
     16795  pages = {{543-555}}
     16796}
     16797@article{Vennemann2007,
     16798  author = {Vennemann, Peter and Lindken, Ralph and Westerweel, Jerry},
     16799  title = {{In vivo whole-field blood velocity measurement techniques}},
     16800  journal = {{Experiments in Fluids}},
     16801  year = {2007},
     16802  volume = {{42}},
     16803  number = {{3}},
     16804  pages = {{495-511}}
     16805}
     16806@article{Vosch2007,
     16807  author = {Vosch, Tom and Antoku, Yasuko and Hsiang, Jung-Cheng and Richards, Chris I. and Gonzalez, Jose I. and Dickson, Robert M.},
     16808  title = {{Strongly emissive individual DNA-encapsulated Ag nanoclusters as single-molecule fluorophores}},
     16809  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16810  year = {2007},
     16811  volume = {{104}},
     16812  number = {{31}},
     16813  pages = {{12616-12621}}
     16814}
     16815@article{Galletto2006,
     16816  author = {Galletto, Roberto and Amitani, Ichiro and Baskin, Ronald J. and Kowalczykowski, Stephen C.},
     16817  title = {{Direct observation of individual RecA filaments assembling on single DNA molecules}},
     16818  journal = {{Nature}},
     16819  year = {2006},
     16820  volume = {{443}},
     16821  number = {{7113}},
     16822  pages = {{875-878}}
     16823}
     16824@article{Singh-Zocchi2003,
     16825  author = {Singh-Zocchi, Mukta and Dixit, Sanhita and Ivanov, Vassili and Zocchi, Giovanni},
     16826  title = {{Single-molecule detection of DNA hybridization}},
     16827  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16828  year = {2003},
     16829  volume = {{100}},
     16830  number = {{13}},
     16831  pages = {{7605-7610}}
     16832}
     16833@article{Frej1993,
     16834  author = {Frej, Nasser A. and Prieve, Dennis C.},
     16835  title = {{Hindered diffusion of a single sphere very near a wall in a nonuniform force field}},
     16836  journal = {{Journal of Chemical Physics}},
     16837  year = {1993},
     16838  volume = {{98}},
     16839  number = {{9}},
     16840  pages = {{7552-7564}}
     16841}
     16842@article{Lagowski1991,
     16843  author = {Lagowski, Jolanta B. and Noolandi, Jaan and Nickel, Bernie},
     16844  title = {{Stiff chain model-functional integral approach}},
     16845  journal = {{Journal of Chemical Physics}},
     16846  year = {1991},
     16847  volume = {{95}},
     16848  number = {{2}},
     16849  pages = {{1266-1296}}
     16850}
     16851@article{Bednar1995,
     16852  author = {Bednar, Jan and Furrer, Patrick and Katritch, Vsevolod and Stasiak, Alicja Z. and Dubochet, Jacques and Stasiak, Andrzej},
     16853  title = {{Determination of DNA Persistence Length by Cryo-electron Microscopy. Separation of the Static and Dynamic Contributions to the Apparent Persistence Length of DNA}},
     16854  journal = {{Journal of Molecular Biology}},
     16855  year = {1995},
     16856  volume = {{254}},
     16857  number = {{4}},
     16858  pages = {{579-594}}
     16859}
     16860@article{McIntosh2009,
     16861  author = {McIntosh, D.B. and Ribeck, N. and Saleh, O.A.},
     16862  title = {{Detailed scaling analysis of low-force polyelectrolyte elasticity}},
     16863  journal = {{Physical Review E}},
     16864  year = {2009},
     16865  volume = {{80}},
     16866  number = {{4}},
     16867  pages = {{041803}}
     16868}
     16869@article{Hyeon2006b,
     16870  author = {Hyeon, Changbong and Dima, Ruxandra I. and Thirumalai, D.},
     16871  title = {{Size, shape, and flexibility of RNA structures}},
     16872  journal = {{The Journal of Chemical Physics}},
     16873  year = {2006},
     16874  volume = {{125}},
     16875  number = {{3}},
     16876  pages = {{194905}}
     16877}
     16878@article{Caarls2010,
     16879  author = {Caarls, W. and Rieger, B and de Vries, A.H.B. and Arndt-Jovin, D.J. and Jovin, T.M.},
     16880  title = {{Minimizing light exposure with the programmable array microscope}},
     16881  journal = {{Journal of Microscopy}},
     16882  year = {2010}
     16883}
     16884@article{Jacobsen2006,
     16885  author = {Jacobsen, Volker and Stoller, Patrick and Brunner, Christian and Vogel, Viola and Sandoghdar, Vahid},
     16886  title = {{Interferometric optical detection and tracking of very small gold nanoparticles at a water-glass interface}},
     16887  journal = {{Optics Express}},
     16888  year = {2006},
     16889  volume = {{14}},
     16890  number = {{1}},
     16891  pages = {{405}}
     16892}
     16893@article{Crut2007,
     16894  author = {Cut, Aur\\\'elien and Koster, Daniel A. and Seidel, Ralf and Wiggins, Chris H. and Dekker, Nynke H.},
     16895  title = {{Fast dynamics of supercoiled DNA revealed by single-molecule experiments}},
     16896  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16897  year = {2007},
     16898  volume = {{104}},
     16899  number = {{29}},
     16900  pages = {{11957-11962}}
     16901}
     16902@article{Yguerabide1998a,
     16903  author = {Yguerabide, Juan and Yguerabide, Evangelina E.},
     16904  title = {{Light-Scattering Submicroscopic Particles as Highly Fluorescent Analogs and Their Use as Tracer Labels in Clinical and Biological Applications. I. Theory}},
     16905  journal = {{Analytical Biochemistry}},
     16906  year = {1998},
     16907  volume = {{262}},
     16908  pages = {{137-156
     16909 }}
     16910}
     16911@article{Strick1998b,
     16912  author = {Strick, T.R. and Allemand, J.-F. and Croquette, V. and Bensimon, D.},
     16913  title = {{Physical Approaches to the Study of DNA}},
     16914  journal = {{Journal of Statistical Physics}},
     16915  year = {1998},
     16916  volume = {{93}},
     16917  number = {{3-4}},
     16918  pages = {{647-672}}
     16919}
     16920@article{Rechendorff2009,
     16921  author = {Rechendorff, Kristian and Witz, Guillaume and Adamcik, Jozef and Dietler, Giovanni},
     16922  title = {{Persistence length and scaling properties of single-stranded DNA adsorbed on modified graphite}},
     16923  journal = {{Journal of Chemical Physics}},
     16924  year = {2009},
     16925  volume = {{131}},
     16926  number = {{9}},
     16927  pages = {{095103}}
     16928}
     16929@article{Graff2006,
     16930  author = {Graff, Mason and Frazier, A. Bruno},
     16931  title = {{Resonance Light Scattering (RLS) Detection of Nanoparticle Separations in a Microelectrical Field-Flow Fractionation System}},
     16932  journal = {{IEEE Transactions on Nanotechnology}},
     16933  year = {2006},
     16934  volume = {{5}},
     16935  number = {{1}},
     16936  pages = {{8-13}}
     16937}
     16938@article{Kao1994,
     16939  author = {Kao, H.P. and Verkman, A.S.},
     16940  title = {{Tracking of single fluorescent particles in three dimensions: use of cylindrical optics to encode particle position}},
     16941  journal = {{Biophysical Journal}},
     16942  year = {1994},
     16943  volume = {{67}},
     16944  number = {{3}},
     16945  pages = {{1291-1300}}
     16946}
     16947@article{Jo2007,
     16948  author = {Jo, Kyubong and Dhingra, Dalia M. and Odijk, Theo and de Pablo, Juan J. and Graham, Michael D. and Runnheim, Rod and Forrest, Dan and Schwartz, David C.},
     16949  title = {{A single-molecule barcoding system using nanoslits for DNA analysis}},
     16950  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     16951  year = {2007},
     16952  volume = {{104}},
     16953  number = {{8}},
     16954  pages = {{2673-2678}}
     16955}
     16956@article{Speidel2003,
     16957  author = {Speidel, Michael and Jonas, Alexandr and Florin, Ernst-Ludwig},
     16958  title = {{Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging}},
     16959  journal = {{Optics Letters}},
     16960  year = {2003},
     16961  volume = {{28}},
     16962  number = {{2}},
     16963  pages = {{69-71}}
     16964}
     16965@article{Pounder2006,
     16966  author = {Pounder, June I. and Aldous, Wade K. and Woods, Gail L.},
     16967  title = {{Comparison of real-time polymerase chain reaction using the Smart Cycler and the Gen-Probe amplified Mycobacterium tuberculosis direct test for detection of M. tuberculosis complex in clinical specimens }},
     16968  journal = {{Diagnostic Microbiology and Infectious Disease}},
     16969  year = {2006},
     16970  volume = {{54}},
     16971  number = {{3}},
     16972  pages = {{217-222}}
     16973}
     16974@article{Harris1966,
     16975  author = {Harris, R.A. and Hearst, J.E.},
     16976  title = {{On Polymer Dynamics}},
     16977  journal = {{The Journal of Chemical Physics}},
     16978  year = {1966},
     16979  volume = {{44}},
     16980  number = {{7}},
     16981  pages = {{2595}}
     16982}
     16983@article{Willert1992,
     16984  author = {Willert, C. E. and Gharib, M.},
     16985  title = {{Three-dimensional particle imaging with a single camera}},
     16986  journal = {{Experiments in Fluids}},
     16987  year = {1992},
     16988  volume = {{12}},
     16989  pages = {{353-358}}
     16990}
     16991@article{Oberholzer1997,
     16992  author = {Oberholzer, Matthew R. and Wagner, Norman J. and Lenhoff, Abraham M.},
     16993  title = {{Grand canonical Brownian dynamics simulation of colloidal adsorption}},
     16994  journal = {{Journal of Chemical Physics}},
     16995  year = {1997},
     16996  volume = {{107}},
     16997  number = {{21}},
     16998  pages = {{9157-9167}}
     16999}
     17000@article{Wiggins2006,
     17001  author = {Wiggins, Paul A. and Nelson, Philip C.},
     17002  title = {{Generalized theory of semiflexible polymers}},
     17003  journal = {{Physical Review E}},
     17004  year = {2006},
     17005  volume = {{73}}
     17006}
     17007@article{Brenner1961,
     17008  author = {Brenner, Howard},
     17009  title = {{The slow motion of a sphere through a viscous fluid towards a plane surface}},
     17010  journal = {{Chemical Engineering Science}},
     17011  year = {1961},
     17012  volume = {{16}},
     17013  number = {{3-4}},
     17014  pages = {{242-251}}
     17015}
     17016@article{Bhattacharjee1987,
     17017  author = {Bhattacharjee, Somendra M. and Muthukumar, M.},
     17018  title = {{Statistical mechanics of solutions of semiflexible chains: A path integral formulation}},
     17019  journal = {{the Journal of Chemical Physics}},
     17020  year = {1987},
     17021  volume = {{86}},
     17022  number = {{1}},
     17023  pages = {{411-418}}
     17024}
     17025@article{Armani2007,
     17026  author = {Armani, Andrea M. and Kulkarni, Rajan P. and Fraser, Scott E. and Flagan, Richard C. and Vahala, Kerry J.},
     17027  title = {{Label-Free, Single-Molecule Detection with Optical Microcavities}},
     17028  journal = {{Sciencexpress}},
     17029  year = {2007}
     17030}
     17031@article{Hegner1999,
     17032  author = {Hegner, Martin and Smith, Steven B. and Bustamante, Carlos},
     17033  title = {{Polymerization and mechanical properties of single RecA-DNA filaments}},
     17034  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     17035  year = {1999},
     17036  volume = {{96}},
     17037  number = {{18}},
     17038  pages = {{10109-10114}}
     17039}
     17040@article{Zhu2001,
     17041  author = {Zhu, Heng and Snyder, Michael},
     17042  title = {{Protein arrays and microarrays}},
     17043  journal = {{Current Opinion in Chemical Biology}},
     17044  year = {2001},
     17045  volume = {{5}},
     17046  number = {{1}},
     17047  pages = {{40-45}}
     17048}
     17049@article{Wiggins2006b,
     17050  author = {Wiggins, P. A. and van der Heijden, T. and Moreno-Herrero, F. and Spakowitz, A. and Philips, R. and Windom, J. and Dekker, C. and Nelson, P. C.},
     17051  title = {{High flexibility of DNA on short length scales probed by atomic force microscopy}},
     17052  journal = {{Nature Nanotechnology}},
     17053  year = {2006},
     17054  volume = {{1}},
     17055  pages = {{137-141}}
     17056}
     17057@article{Zhang2007,
     17058  author = {Zhang, B. and Zerubia, J. and O.-M., Jean-Christophe},
     17059  title = {{Gaussian approximations of fluorescence microscope point-spread function models}},
     17060  journal = {Applied Optics},
     17061  year = {2007},
     17062  volume = {{46}},
     17063  number = {{10}},
     17064  pages = {{1819-1829}}
     17065}
     17066@article{Scott1979,
     17067  author = {Scott, David W.},
     17068  title = {{On optimal and data-based histograms}},
     17069  journal = {{Biometrika}},
     17070  year = {1979},
     17071  volume = {{66}},
     17072  number = {{3}},
     17073  pages = {{605-610}}
     17074}
     17075@article{Mlodzianoski2009,
     17076  author = {Mlodzianoski, Michael J. and Juette, Manuel F. and Beane, Glen L. and Bewersdorf, Joerg},
     17077  title = {{Experimental characterization of 3D localization techniques for particle-tracking and super-resolution microscopy}},
     17078  journal = {{Optics Express}},
     17079  year = {2009},
     17080  volume = {{17}},
     17081  number = {{10}},
     17082  pages = {{8264-8277}}
     17083}
     17084@article{Carre2003,
     17085  author = {Carr\\\'e, Alain and Lacarri\\\`ere, Val\\\'erie and Birch, William},
     17086  title = {{Molecular interactions between DNA and an aminated glass substrate}},
     17087  journal = {{Journal of Colloid and Interface Science}},
     17088  year = {2003},
     17089  volume = {{260}},
     17090  pages = {{49-55}}
     17091}
     17092@article{Sage2005,
     17093  author = {Sage, Daniel and Neumann, Franck R. and Hediger, Florence and Gasser, Susan M. and Unser, Michael},
     17094  title = {{Automatic Tracking of Individual Fluorescence Particles: Application to the Study of Chromosome Dynamics}},
     17095  journal = {{IEEE Transactions on Image Processing}},
     17096  year = {2005},
     17097  volume = {{14}},
     17098  number = {{9}},
     17099  pages = {{1372-1383}}
     17100}
     17101@article{Dohoney2001,
     17102  author = {Dohoney, Kathleen M. and Gelles, Jeff},
     17103  title = {{Chi-Sequence recognition and DNA translocation by single RecBCD helicase/nuclease molecules}},
     17104  journal = {{Nature}},
     17105  year = {2001},
     17106  volume = {{409}},
     17107  pages = {{370-374}}
     17108}
     17109@article{Saleh2009,
     17110  author = {Saleh, O.A. and McIntosh, D.B. and Pincus, P. and Ribeck, N.},
     17111  title = {{Nonlinear Low-Force Elasticity of Single-Stranded DNA Molecules}},
     17112  journal = {{Physical Review Letters}},
     17113  year = {2009},
     17114  volume = {{102}},
     17115  number = {{6}},
     17116  pages = {{068301}}
     17117}
     17118@article{Moerner2007,
     17119  author = {Moerner, W.E.},
     17120  title = {{New directions in single-molecule imaging and analysis}},
     17121  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     17122  year = {2007},
     17123  volume = {{104}},
     17124  number = {{31}},
     17125  pages = {{12596-12602}}
     17126}
     17127@article{Spakowitz2005,
     17128  author = {Spakowitz, Andrew J. and Wang, Zhen-Gang},
     17129  title = {{End-to-end distance vector distribution with fixed end orientations for the wormlike chain model}},
     17130  journal = {{Physical Review E}},
     17131  year = {2005},
     17132  volume = {{72}}
     17133}
     17134@article{Spakowitz2004,
     17135  author = {Spakowitz, Andrew J. and Wang, Zhen-Gang},
     17136  title = {{Exact Results for a Semiflexible Polymer Chain in an Aligning Field}},
     17137  journal = {{Macromolecules}},
     17138  year = {2004},
     17139  volume = {{37}},
     17140  pages = {{5814-5823}}
     17141}
     17142@article{Spakowitz2006,
     17143  author = {Spakowitz, A. J.},
     17144  title = {{Wormlike chain statistics with twist and fixed ends}},
     17145  journal = {{Europhysics Letters (EPL)}},
     17146  year = {2006},
     17147  volume = {{73}},
     17148  number = {{5}},
     17149  pages = {{684-690}}
     17150}
     17151@article{Wieser2008,
     17152  author = {Wieser, Stefan and Axmann, Markus and Sch\\\"utz, Gerhard J.},
     17153  title = {{Versatile Analysis of Single-Molecule Tracking Data by Comprehensive Testing against Monte Carlo Simulations}},
     17154  journal = {{Biophysical Journal}},
     17155  year = {2008},
     17156  volume = {{95}},
     17157  number = {{12}},
     17158  pages = {{5988-6001}}
     17159}
     17160@phdthesis{Sarkar2002,
     17161  author = {Sarkar, Abhijit},
     17162  title = {{Theoretical micromechanics of DNA and DNA-protein complexes}},
     17163  year = {2002},
     17164  school = {{University of Illinois at Chicago}}
     17165}
     17166@article{Ha1995,
     17167  author = {Ha, B.-Y. and Thirumalai, D.},
     17168  title = {{A mean-field model for semiflexible chains}},
     17169  journal = {{Journal of Chemical Physics}},
     17170  year = {1995},
     17171  volume = {{103}},
     17172  number = {{21}},
     17173  pages = {{9408-9412}}
     17174}
     17175@misc{Beausang2006,
     17176  author = {Beausang, John F. and Zurla, Chiara and Sullivan, Luke and Finzi, Laura and Nelson, Philip C.},
     17177  title = {{Elementary simulation of tethered Brownian motion}},
     17178  year = {2006},
     17179  month = {October 1, 2006}
     17180}
     17181@article{Beausang2007,
     17182  author = {Beausang, John F. and Zurla, Chiara and Finzi, Laura and Sullivan, Luke and Nelson, Philip C.},
     17183  title = {{Elementary simulation of tethered Brownian motion}},
     17184  journal = {{American Journal of Physics}},
     17185  year = {2007},
     17186  volume = {{75}},
     17187  number = {{6}},
     17188  pages = {{520-523}}
     17189}
     17190@phdthesis{Guasto2008,
     17191  author = {Guasto, Jeffrey S.},
     17192  title = {{Micro- and Nano-scale Colloidal Dynamics Near Surfaces}},
     17193  year = {2008},
     17194  school = {{Brown University}}
     17195}
     17196@misc{Nelson2001,
     17197  author = {Nelson, Edward},
     17198  title = {{Dynamical Theories of Brownian Motion}},
     17199  year = {2001},
     17200  volume = {Second edition},
     17201  publisher = {{Princeton University Press}}
     17202}
     17203@article{Shivashankar1998,
     17204  author = {Shivashankar, G.V. and Stolovitzky, G. and Libchaber, A.},
     17205  title = {{Backscattering from a tethered bead as a probe of DNA flexibility}},
     17206  journal = {{Applied Physics Letters}},
     17207  year = {1998},
     17208  volume = {{73}},
     17209  number = {{3}},
     17210  pages = {{291-293}}
     17211}
     17212@phdthesis{Niu2004,
     17213  author = {Niu, Sanjun},
     17214  title = {{A Label-free, Fluorescence Based Assay for Microarray}},
     17215  year = {2004},
     17216  school = {{Virginia Polytechnic Institute and State University}}
     17217}
     17218@article{Hiraoka1987,
     17219  author = {Hiraoka, Yasushi and Sedat, John W. and Agard, David A.},
     17220  title = {{The Use of a Charge-Coupled Device for Quantitative Optical Microscopy of Biological Structures}},
     17221  journal = {{Science}},
     17222  year = {1987},
     17223  volume = {{238}},
     17224  pages = {{36-41}}
     17225}
     17226@article{Yamakawa1976,
     17227  author = {Yamakawa, Hiromi and Fujii, Motoharu and Shimada, Jiro},
     17228  title = {{Statistical mechanics of helical wormlike chains. II. Operational method and moments}},
     17229  journal = {{The Journal of Chemical Physics}},
     17230  year = {1976},
     17231  volume = {{65}},
     17232  number = {{6}},
     17233  pages = {{2371-2376}}
     17234}
     17235@article{Nelson2007,
     17236  author = {Nelson, Philip C.},
     17237  title = {{Colloidal particle motion as a diagnostic of DNA conformational transitions}},
     17238  journal = {{Current Opinion in Colloid & Interface Science}},
     17239  year = {2007}
     17240}
     17241@article{Allemand2003,
     17242  author = {Allemand, Jean-Francois and Bensimon, David and Croquette, Vincent},
     17243  title = {{Stretching DNA and RNA to probe their interactions with proteins}},
     17244  journal = {{Current Opinion in Structural Biology}},
     17245  year = {2003},
     17246  volume = {{13}},
     17247  pages = {{266-274}}
     17248}
     17249@article{Liu2007,
     17250  author = {Liu, Gang Logan and Long, Yi-Tao and Choi, Yeonho and Kang, Taewook and Lee, Luke P.},
     17251  title = {{Quantized plasmon quenching dips nanospectroscopy via plasmon resonance energy transfer}},
     17252  journal = {{Nature Methods}},
     17253  year = {2007},
     17254  volume = {{4}},
     17255  number = {{12}},
     17256  pages = {{1015-1017}}
     17257}
     17258@article{Prieve1990,
     17259  author = {Prieve, Dennis C. and Frej, Nasser A.},
     17260  title = {{Total Internal Reflection Microscopy: a Tool for Measuring Colloidal Forces}},
     17261  journal = {{Langmuir}},
     17262  year = {1990},
     17263  volume = {{6}},
     17264  number = {{2}},
     17265  pages = {{396-403}}
     17266}
     17267@article{Strick1996,
     17268  author = {Strick, T.R. and Allemand, J.-F. and Bensimon, D. and Bensimon, A. and Croquette, V.},
     17269  title = {{The Elasticity of a Single Supercoiled DNA Molecule}},
     17270  journal = {{Science}},
     17271  year = {1996},
     17272  volume = {{271}},
     17273  number = {{5257}},
     17274  pages = {{1835-1837}}
     17275}
     17276@article{Prieve1993,
     17277  author = {Prieve, Dennis C. and Walz, John Y.},
     17278  title = {{Scattering of an evanescent surface wave by a microscopic dielectric sphere}},
     17279  journal = {{Applied Optics}},
     17280  year = {1993},
     17281  volume = {{32}},
     17282  number = {{9}}
     17283}
     17284@article{Montanari2001,
     17285  author = {Montanari, Andrea and M\\\'ezard, Marc},
     17286  title = {{Hairpin Formation and Elongation of Biomolecules}},
     17287  journal = {{Physical Review Letters}},
     17288  year = {2001},
     17289  volume = {{86}},
     17290  number = {{10}},
     17291  pages = {{2178-2181}}
     17292}
     17293@article{Storm2003b,
     17294  author = {Storm, C. and Nelson, P. C.},
     17295  title = {{Theory of high-force DNA stretching and overstretching}},
     17296  journal = {{Physical Review E}},
     17297  year = {2003},
     17298  volume = {{67}},
     17299  number = {{5}},
     17300  pages = {{051906}}
     17301}
     17302@article{Bouchiat1999,
     17303  author = {Bouchiat, C. and Wang, M. D. and Allemand, J.-F. and Strick, T. and Block, S. M. and Croquette, V.},
     17304  title = {{Estimating the Persistence Length of a Worm-Like Chain Molecule from Force-Extension Measurements}},
     17305  journal = {{Biophysical Journal}},
     17306  year = {1999},
     17307  volume = {{76}},
     17308  pages = {{409-413}}
     17309}
     17310@article{Cady2007,
     17311  author = {Cady, Nathaniel C. and Strickland, Aaron D. and Batt, Carl A.},
     17312  title = {{Optimized linkage and quenching strategies for quantum dot molecular beacons}},
     17313  journal = {{Molecular and Cellular Probes}},
     17314  year = {2007},
     17315  volume = {{21}},
     17316  pages = {{116-124}}
     17317}
     17318@article{Fraden1993,
     17319  author = {Fraden, Seth and Maret, Georg},
     17320  title = {{Angular correlations and the isotropic-nematic phase transition in suspensions of tobacco mosaic virus}},
     17321  journal = {{Physical Review E}},
     17322  year = {1993},
     17323  volume = {{48}},
     17324  number = {{4}},
     17325  pages = {{2816-2838}}
     17326}
     17327@article{Bustamante1994,
     17328  author = {Bustamante, C. and Marko, J.F. and Siggia, E.D. and Smith, S.},
     17329  title = {{Entropic Elasticity of lambda-Phage DNA}},
     17330  journal = {{Science}},
     17331  year = {1994},
     17332  volume = {{265}},
     17333  number = {{5178}},
     17334  pages = {{1599-1601}}
     17335}
     17336@article{Rouse1953,
     17337  author = {Rouse, Prince E.},
     17338  title = {{A Theory of the Linear Viscoelastic Properties of Dilute Solutions of Coiling Polymers}},
     17339  journal = {{The Journal of Chemical Physics}},
     17340  year = {1953},
     17341  volume = {{21}},
     17342  number = {{7}},
     17343  pages = {{1272-1280}}
     17344}
     17345@article{Vanzi2003,
     17346  author = {Vanzi, Francesco and Vladimirov, Serguei and Knudsen, Charlotte R. and Goldman, Yale E. and Cooperman, Barry S.},
     17347  title = {{Protein synthesis by single ribosomes}},
     17348  journal = {{RNA}},
     17349  year = {2003},
     17350  volume = {{9}},
     17351  number = {{10}},
     17352  pages = {{1174-1179}}
     17353}
     17354@article{Lambert2006,
     17355  author = {Lambert, Meredith Newby and V\\\"ocker, Eva and Blumberg, Seth and Redemann, Stefanie and Gajraj, Arivalagan and Meiners, Jens-Christian and Walter, Nils. G.},
     17356  title = {{Mg2+-Induced Compaction of Single RNA Molecules Monitored by Tethered Particle Microscopy}},
     17357  journal = {{Biophysical Journal}},
     17358  year = {2006},
     17359  volume = {{90}},
     17360  pages = {{3672-3685}}
     17361}
     17362@article{Kessler2004,
     17363  author = {Kessler, David A. and Rabin, Yitzhak},
     17364  title = {{Distribution functions for filaments under tension}},
     17365  journal = {{Journal of Chemical Physics}},
     17366  year = {2004},
     17367  volume = {{121}},
     17368  number = {{2}},
     17369  pages = {{1155-1164}}
     17370}
     17371@article{Edwards1970,
     17372  author = {Edwards, S.F.},
     17373  title = {{Theory of the Single Chain}},
     17374  journal = {{Discussions of the Faraday Society}},
     17375  year = {1970},
     17376  volume = {{49}},
     17377  pages = {{43}}
     17378}
     17379@article{Bouzigues2008,
     17380  author = {Bouzigues, C. I. and Tabeling, P. and Bocquet, L.},
     17381  title = {{Nanofluidics in the Debye Layer at Hydrophilic and Hydrophobic Surfaces}},
     17382  journal = {{Physical Review Letters}},
     17383  year = {2008},
     17384  volume = {{101}},
     17385  number = {{11}},
     17386  pages = {{114503}}
     17387}
     17388@misc{Odijk2008,
     17389  author = {Odijk, Theo},
     17390  title = {{Private communication}},
     17391  year = {2008},
     17392  month = {05 September 2008}
     17393}
     17394@article{Kirkpatrick2008,
     17395  author = {Kirkpatrick, S.J. and Duncan, D.D.},
     17396  title = {{Performance of a gradient-based shift estimator in a spatially sparse data environment: tracking the sub-pixel motion of fluorescent particles}},
     17397  journal = {{Journal of Microscopy}},
     17398  year = {2008},
     17399  volume = {{212}},
     17400  number = {{1}},
     17401  pages = {{64-72}}
     17402}
     17403@article{Visnapuu2009,
     17404  author = {Visnapuu, Mari-Liis and Greene, Eric C.},
     17405  title = {{Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition}},
     17406  journal = {{Nature Structural & Molecular Biology}},
     17407  year = {2009},
     17408  volume = {{16}},
     17409  number = {{10}},
     17410  pages = {{1056-1062}}
     17411}
     17412@book{Conover1980,
     17413  author = {Conover, W.J.},
     17414  title = {{Practical Nonparametric Statistics}},
     17415  year = {1980},
     17416  publisher = {{Wiley}},
     17417  series = {{Wiley series in probability and mathematical statistics}},
     17418  address = {{New York}},
     17419  edition = {{Second edition}}
     17420}
     17421@article{Snyder1992,
     17422  author = {Snyder, Donald L. and Schulz, Timothy H. and O'Sullivan, Joseph A.},
     17423  title = {{Deblurring Subject to Nonnegativity Constraints}},
     17424  journal = {{IEEE Transactions on Signal Processing}},
     17425  year = {1992},
     17426  volume = {{40}},
     17427  number = {{5}},
     17428  pages = {{1143-1150}}
     17429}
     17430@article{DiMarzio1965b,
     17431  author = {DiMarzio, Edmund A. and McCrackin, Frank L.},
     17432  title = {{One-Dimensional Model of Polymer Adsorption}},
     17433  journal = {{The Journal of Chemical Physics}},
     17434  year = {1965},
     17435  volume = {{43}},
     17436  number = {{2}}
     17437}
     17438@article{DiMarzio1965a,
     17439  author = {DiMarzio, Edmund A.},
     17440  title = {{Proper Accounting of Conformations of a Polymer Near a Surface}},
     17441  journal = {{The Journal of Chemical Physics}},
     17442  year = {1965},
     17443  volume = {{42}},
     17444  number = {{6}},
     17445  pages = {{2101-2106}}
     17446}
     17447@article{Netopilik1990,
     17448  author = {Netopil\\\'{\\\i}k, M.},
     17449  title = {{Orientation-dependent rotational diffusion coefficient of rod-like macromolecules in semi-dilute solution}},
     17450  journal = {{Rheologica Acta}},
     17451  year = {1990},
     17452  volume = {{29}},
     17453  pages = {{172-173}}
     17454}
     17455@article{Hamaker1937,
     17456  author = {Hamaker, H.C.},
     17457  title = {{The London-Van Der Waals Attraction Between Spherical Particles}},
     17458  journal = {{Physica }},
     17459  year = {1937},
     17460  volume = {{4}},
     17461  number = {{10}},
     17462  pages = {{1058-1072}}
     17463}
     17464@article{Cheezum2001,
     17465  author = {Cheezum, Michael K. and Walker, William F. and Guilford, William H.},
     17466  title = {{Quantitative Comparison of Algorithms for Tracking Single Fluorescent Particles}},
     17467  journal = {{Biophysical Journal}},
     17468  year = {2001},
     17469  volume = {{81}},
     17470  number = {{4}},
     17471  pages = {{2378-2388}}
     17472}
     17473@article{Ritchie2005,
     17474  author = {Ritchie, Ken and Sha, Xiao-Yuan and Kondo, Junko and Iwasawa, Kokoro and Fujiwara, Takahiro and Kusumi, Akihiro},
     17475  title = {{Detection of Non-Brownian Diffusion in the Cell Membrane in Single Molecule Tracking}},
     17476  journal = {{Biophysical Journal}},
     17477  year = {2005},
     17478  volume = {{88}},
     17479  number = {{3}},
     17480  pages = {{2266-2277}}
     17481}
     17482@incollection{Han2009,
     17483  author = {Han, Lin and Lui, Bertrand and Blumberg, Seth and Beausang, John F. and Nelson, Philip C. and Philips, Rob},
     17484  title = {{Calibration of Tethered Particle Motion Experiments}},
     17485  year = {2009},
     17486  volume = {150},
     17487  editor = {Benham, C.J. and Harvey, S. and Olson, W.K. and Sumners, D.W. and Swigon, D.},
     17488  publisher = {{Springer}},
     17489  series = {{The IMA Volumes in Mathematics and its Applications}},
     17490  booktitle = {{Mathematics of DNA Structure, Funcion and Interactions}}
     17491}
     17492@article{Towles2009,
     17493  author = {Towles, Kevin B. and Beausang, John F. and Garcia, H.G. and Philips, Rob and Nelson, Philip C.},
     17494  title = {{First-principles calculation of DNA looping in tethered particle experiments}},
     17495  journal = {{Physical Biology}},
     17496  year = {2009},
     17497  volume = {{6}},
     17498  pages = {{025001}}
     17499}
     17500@article{Pralle1999,
     17501  author = {Pralle, A. and Prummer, M. and Florin, E.-L and Stelzer, E.H.K. and H\\\"orber, J.K.H.},
     17502  title = {{Three-Dimensional High-resolution Particle Tracking for Optical Tweezers by Forward Scattered Light}},
     17503  journal = {{Microscopy Research and Technique}},
     17504  year = {1999},
     17505  volume = {{44}},
     17506  number = {{5}},
     17507  pages = {{378-386}}
     17508}
     17509@article{Wrobel2003,
     17510  author = {Wrobel, Gunnar and Schlingemann, Joerg and Hummerich, Lars and Kramer, Heidi and Lichter, Peter and Hahn, Meinhard},
     17511  title = {{Optimization of high-density cDNA-microarray protocols by 'design of experiments'}},
     17512  journal = {{Nucleic Acids Research}},
     17513  year = {2003},
     17514  volume = {{131}},
     17515  number = {{12}}
     17516}
     17517@article{Gibson1989,
     17518  author = {Gibson, Sarah Frisken and Lanni, Frederick},
     17519  title = {{Diffraction by a Circular Aperture as a Model for Three-Dimensional Microscopy}},
     17520  journal = {{Journal of the Optical Society of America A}},
     17521  year = {1989},
     17522  volume = {{6}},
     17523  number = {{9}},
     17524  pages = {{1357-1367}}
     17525}
     17526@article{Destainville2006,
     17527  author = {Destainville, Nicolas and Salom\\\'e, Laurence},
     17528  title = {{Quantification and Correction of Systematic Erros Due to Detector Time-Averaging in Single-Molecule Tracking Experiments}},
     17529  journal = {{Biophysical Journal}},
     17530  year = {2006},
     17531  volume = {{90}},
     17532  number = {{2}},
     17533  pages = {{L17-L19}}
     17534}
     17535@article{Sader1997,
     17536  author = {Sader, John Elie},
     17537  title = {{Accurate Analytic Formulae for the Far Field Effective Potential and Surface Charge Density of a Uniformly Charged Sphere}},
     17538  journal = {{Journal of Colloid and Interface Science}},
     17539  year = {1997},
     17540  volume = {{188}},
     17541  number = {{2}},
     17542  pages = {{508-510}}
     17543}
     17544@article{Durnin1987,
     17545  author = {Durnin, J. and Miceli, J.J., Jr. and Eberly, J.H.},
     17546  title = {{Diffraction-Free Beams}},
     17547  journal = {{Physical Review Letters}},
     17548  year = {1987},
     17549  volume = {{58}},
     17550  number = {{15}},
     17551  pages = {{1499-1501}}
     17552}
     17553@article{Moroz1998,
     17554  author = {Moroz, J. David and Nelson, Philip},
     17555  title = {{Entropic Elasticity of Twist-Storing Polymers}},
     17556  journal = {{Macromolecules}},
     17557  year = {1998},
     17558  volume = {{31}},
     17559  pages = {{6333-6347}}
     17560}
     17561@article{Peters1998,
     17562  author = {Peters, Inge M. and de Grooth, Bart G. and Schins, Juleon M. and Figdor, Carl G. and Greve, Jan},
     17563  title = {{Three dimensional single-particle tracking with nanometer resolution}},
     17564  journal = {{Review of Scientific Instruments}},
     17565  year = {1998},
     17566  volume = {{69}},
     17567  number = {{7}},
     17568  pages = {{2762-2766}}
     17569}
     17570@article{Kessler1991,
     17571  author = {Kessler, Christoph},
     17572  title = {{The digoxigenin:anti-digoxigening (DIG) technology - a survey on the concept and realization of a novel bioanalytical indicator system}},
     17573  journal = {{Molecular and Cellular Probes}},
     17574  year = {1991},
     17575  volume = {{5}},
     17576  pages = {{161-205}}
     17577}
     17578@article{Hyeon2006a,
     17579  author = {Hyeon, Changbong and Thirumalai, D.},
     17580  title = {{Kinetics of interior loop formation in semiflexible chains}},
     17581  journal = {{The Journal of Chemical Physics}},
     17582  year = {2006},
     17583  volume = {{124}},
     17584  number = {{10}},
     17585  pages = {{104905}}
     17586}
     17587@article{Moroz1997,
     17588  author = {Moroz, J. David and Nelson, Philip},
     17589  title = {{Torsional directed walks, entropic elasticity, and DNA twist stiffness}},
     17590  journal = {{Proceedings of the National Academy of Sciences of the USA}},
     17591  year = {1997},
     17592  volume = {{94}},
     17593  number = {{26}},
     17594  pages = {{14418-14422}}
     17595}
     17596@article{Massart2005,
     17597  author = {Massart, D.L. and Smeyers-Verbeke, J. and Capron, X. and Schlesier, Karin},
     17598  title = {{Visual Presentation of Data by Means of Box Plots}},
     17599  journal = {{LC-GC Europe}},
     17600  year = {2005},
     17601  volume = {{18}},
     17602  number = {{4}},
     17603  pages = {{215-218}}
     17604}
     17605@article{Hynes2001,
     17606  author = {Hynes, N. E. and Horsch, K. and Olayioye, M. A. and Badache, A.},
     17607  title = {The ErbB receptor tyrosine family as signal integrators},
     17608  journal = {Endocr Relat Cancer},
     17609  year = {2001},
     17610  volume = {8},
     17611  number = {3},
     17612  pages = {151-9}
     17613}
     17614@article{Michalet2001,
     17615  author = {Michalet, X. and Pinaud, F. and Lacoste, T. D. and Dahan, M. and Bruchez, M. P. and Alivisatos, A. P. and Weiss, S.},
     17616  title = {Properties of fluorescent semiconductor nanocrystals and their application to biological labeling},
     17617  journal = {Single Molecules},
     17618  year = {2001},
     17619  volume = {2},
     17620  number = {4},
     17621  pages = {261-276}
     17622}
     17623@article{Kuno2001,
     17624  author = {Kuno, M. and Fromm, D. P. and Hamann, H. F. and Gallagher, A. and Nesbitt, D. J.},
     17625  title = {"On"/"off" fluorescence intermittency of single semiconductor quantum dots},
     17626  journal = {Journal of Chemical Physics},
     17627  year = {2001},
     17628  volume = {115},
     17629  number = {2},
     17630  pages = {1028-1040}
     17631}
     17632@article{Martinez2003,
     17633  author = {Martinez, M. J. and Aragon, A. D. and Rodriguez, A. L. and Weber, J. M. and Timlin, J. A. and Sinclair, M. B. and Haaland, D. M. and Werner-Washburne, M.},
     17634  title = {Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays},
     17635  journal = {Nucleic Acids Research},
     17636  year = {2003},
     17637  volume = {31},
     17638  number = {4},
     17639  pages = {e18}
     17640}
     17641@article{Stauffer1997,
     17642  author = {Stauffer, T. P. and Meyer, T.},
     17643  title = {Compartmentalized IgE receptor-mediated signal transduction in living cells},
     17644  journal = {J Cell Biol},
     17645  year = {1997},
     17646  volume = {139},
     17647  number = {6},
     17648  pages = {1447-54}
     17649}
     17650@article{Hebert2005,
     17651  author = {Hebert, B. and Costantino, S. and Wiseman, P. W.},
     17652  title = {Spatiotemporal image correlation Spectroscopy (STICS) theory, verification, and application to protein velocity mapping in living CHO cells},
     17653  journal = {Biophysical Journal},
     17654  year = {2005},
     17655  volume = {88},
     17656  number = {5},
     17657  pages = {3601-3614}
     17658}
     17659@article{Pyenta2003,
     17660  author = {Pyenta, P. and Schwille, P. and Webb, W. and Holowka, D. and Baird, B.},
     17661  title = {Lateral diffusion of membrane lipid-anchored probes before and after aggregation of cell surface IgE-receptors},
     17662  journal = {J. Phys. Chem. A},
     17663  year = {2003},
     17664  volume = {107},
     17665  pages = {8310-8318}
     17666}
     17667@misc{CUDA,
     17668  author = {NVIDIA},
     17669  title = {Compute Unified Device Architecture (CUDA)},
     17670  year = {2007},
     17671  note = {{http://www.nvidia.com}}
     17672}
     17673@article{Petersen1993,
     17674  author = {Petersen, N. and Hoddelius, P.L. and Wiseman, P. and Seger, O. and Magnusson, K.},
     17675  title = {Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application},
     17676  journal = {Biophys. J.},
     17677  year = {1993},
     17678  volume = {65},
     17679  pages = {1135-1146}
     17680}
     17681@article{Hess2006,
     17682  author = {Hess, S. T. and Girirajan, T. P. K. and Mason, M. D.},
     17683  title = {Ultra-high resolution imaging by fluorescence photoactivation localization microscopy},
     17684  journal = {Biophysical Journal},
     17685  year = {2006},
     17686  volume = {91},
     17687  number = {11},
     17688  pages = {4258-4272}
     17689}
     17690@article{Kotula2004,
     17691  author = {Kotula, P. G. and Keenan, M. R. and Michael, J. R. },
     17692  title = {Automated analysis of SEM X-Ray spectral images: a powerful new microanalysis tool},
     17693  journal = {Microscopy and Microanalysis },
     17694  year = {2004},
     17695  volume = {9},
     17696  pages = {1-17}
     17697}
     17698@article{Yarden2001,
     17699  author = {Yarden, Y. and Sliwkowski, M. X.},
     17700  title = {Untangling the ErbB signalling network},
     17701  journal = {Nat Rev Mol Cell Biol},
     17702  year = {2001},
     17703  volume = {2},
     17704  number = {2},
     17705  pages = {127-37}
     17706}
     17707@article{MinGW,
     17708  author = {MinGW},
     17709  title = {Minimalist GNU for Windows},
     17710  year = {2008},
     17711  url = {http://www.mingw.org/}
     17712}
     17713@article{Shroff2008,
     17714  author = {Shroff, H. and Galbraith, C. G. and Galbraith, J. A. and Betzig, E.},
     17715  title = {Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics},
     17716  journal = {Nature Methods},
     17717  year = {2008},
     17718  volume = {5},
     17719  number = {5},
     17720  pages = {417-423}
     17721}
     17722@book{Jain1988,
     17723  author = {Jain, A. and Dubes, R.},
     17724  title = {Algorithms for Clustering Data},
     17725  year = {1988},
     17726  publisher = {Prentice Hall}
     17727}
     17728@article{Grecco2004,
     17729  author = {Grecco, H. E. and Lidke, K. A. and Heintzmann, R. and Lidke, D. S. and Spagnuolo, C. and Martinez, O. E. and Jares-Erijman, E. A. and Jovin, T. M.},
     17730  title = {Ensemble and single particle photophysical proper-ties (Two-Photon excitation, anisotropy, FRET, lifetime, spectral conversion) of commercial quantum dots in solution and in live cells},
     17731  journal = {Microscopy Research and Technique},
     17732  year = {2004},
     17733  volume = {65},
     17734  number = {4-5},
     17735  pages = {169-179}
     17736}
     17737@article{VanBenthem2002,
     17738  author = {Van Benthem, M. H. and Keenan, M. R. and Haaland, D. M. },
     17739  title = {Application of equality constraints on variables during alternating least squares procedures},
     17740  journal = {Journal of Chemometrics},
     17741  year = {2002},
     17742  volume = {16},
     17743  pages = {613-622}
     17744}
     17745@article{Manley2008,
     17746  author = {Manley, S. and Gillette, J. M. and Patterson, G. H. and Shroff, H. and Hess, H. F. and Betzig, E. and Lippincott-Schwartz, J.},
     17747  title = {High-density mapping of single-molecule trajectories with photoactivated localization microscopy},
     17748  journal = {Nature Methods},
     17749  year = {2008},
     17750  volume = {5},
     17751  number = {2},
     17752  pages = {155-157}
     17753}
     17754@article{Wilson2000,
     17755  author = {Wilson, B. S. and Pfeiffer, J. R. and Oliver, J. M.},
     17756  title = {Observing FcepsilonRI signaling from the inside of the mast cell membrane},
     17757  journal = {Journal of Cell Biology},
     17758  year = {2000},
     17759  volume = {149},
     17760  number = {5},
     17761  pages = {1131-1142}
     17762}
     17763@article{Wilson2004,
     17764  author = {Wilson, B. S. and Steinberg, S. L. and Liederman, K. and Pfeiffer, J. R. and Surviladze, Z. and Zhang, J. and Samelson, L. E. and Yang, L. H. and Kotula, P. G. and Oliver, J. M.},
     17765  title = {Markers for detergent-resistant lipid rafts occupy distinct and dynamic domains in native membranes},
     17766  journal = {Molecular Biology of the Cell},
     17767  year = {2004},
     17768  volume = {15},
     17769  number = {6},
     17770  pages = {2580-2592}
     17771}
     17772@article{Timlin2005,
     17773  author = {Timlin, J. A. and Haaland, D. M. and Sinclair, M. B. and Aragon, A. D. and Martinez, M. J. and Werner-Washburne, M.},
     17774  title = {Hyperspectral microarray scanning: impact on the accuracy and reliability of gene expression data},
     17775  journal = {BMC Genomics},
     17776  year = {2005},
     17777  volume = {6},
     17778  number = {1},
     17779  pages = {72}
     17780}
     17781@article{Forney1973,
     17782  author = {Forney, G. D.},
     17783  title = {Viterbi Algorithm},
     17784  journal = {Proceedings of the Ieee},
     17785  year = {1973},
     17786  volume = {61},
     17787  number = {3},
     17788  pages = {268-278}
     17789}
     17790@article{Szent-Gyorgyi2008,
     17791  author = {Szent-Gyorgyi, C. and Schmidt, B. F. and Creeger, Y. and Fisher, G. W. and Zakel, K. L. and Adler, S. and Fitzpatrick, J. A. J. and Woolford, C. A. and Yan, Q. and Vasilev, K. V. and Berget, P. B. and Bruchez, M. P. and Jarvik, J. W. and Waggoner, A.},
     17792  title = {Fluorogen-activating single-chain antibodies for imaging cell surface proteins (vol 26, pg 235, 2008)},
     17793  journal = {Nature Biotechnology},
     17794  year = {2008},
     17795  volume = {26},
     17796  number = {4},
     17797  pages = {470-470}
     17798}
     17799@article{Andrews2008,
     17800  author = {Andrews, N. L. and Lidke, K. A. and Pfeiffer, J. R. and Burns, A. R. and Wilson, B. S. and Oliver, J. M. and Lidke, D. S.},
     17801  title = {Actin restricts Fc epsilon RI diffusion and facilitates antigen-induced receptor immobilization},
     17802  journal = {Nature Cell Biology},
     17803  year = {2008},
     17804  volume = {10},
     17805  number = {8},
     17806  pages = {955-963}
     17807}
     17808@inproceedings{Lidke2007ieee,
     17809  author = {Lidke, K. A. and Heintzmann, R.},
     17810  title = {Localization fluorescence microscopy using quantum dot blinking},
     17811  year = {2007},
     17812  pages = {936-939},
     17813  address = {Metro Washington DC, USA. },
     17814  booktitle = {4th IEEE International Symposium on Biomedical Imaging}
     17815}
     17816@article{Jinschek2010,
     17817  author = {Jinschek, J.R. and Yucelen, E. and Calderon, H.A. and Freitag, B.},
     17818  title = {Quantitative atomic 3-D imaging of single/double sheet graphene structure},
     17819  journal = {Carbon},
     17820  year = {2010}
     17821}
     17822@article{Bates2007,
     17823  author = {Bates, M. and Huang, B. and Dempsey, G. T. and Zhuang, X.},
     17824  title = {Multicolor super-resolution imaging with photo-switchable fluorescent probes},
     17825  journal = {Science},
     17826  year = {2007},
     17827  volume = {317},
     17828  number = {5845},
     17829  pages = {1749-53}
     17830}
     17831@book{Bos2007,
     17832  author = {A. van den Bos},
     17833  title = {Parameter Estimation for Scientists and Engineers},
     17834  year = {2007},
     17835  publisher = {Wiley \& Sons},
     17836  address = {New Jersey}
     17837}
     17838@article{Wolter2009,
     17839  author = {Wolter, S. and Schuttpelz, M. and Tescherepanow, M. and Linde, van de S. and Heilemann, M. and Sauer, M.},
     17840  title = {Real-time computation of subdiffraction-resolution fluorescence images},
     17841  journal = {Journal of Microscopy},
     17842  year = {2010},
     17843  volume = {237},
     17844  number = {1},
     17845  pages = {12-22}
     17846}
     17847@article{Bock2007,
     17848  author = {Bock, H. and Geisler, C. and Wurm, C. A. and Von Middendorff, C. and Jakobs, S. and Schonle, A. and Egner, A. and Hell, S. W. and Eggeling, C.},
     17849  title = {Two-color far-field fluorescence nanoscopy based on photoswitchable emitters},
     17850  journal = {Applied Physics B-Lasers and Optics},
     17851  year = {2007},
     17852  volume = {88},
     17853  number = {2},
     17854  pages = {161-165}
     17855}
     17856@article{Rust2006,
     17857  author = {Rust, M. J. and Bates, M. and Zhuang, X. W.},
     17858  title = {Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy {(STORM)}},
     17859  journal = {Nature Methods},
     17860  year = {2006},
     17861  volume = {3},
     17862  number = {10},
     17863  pages = {793-795}
     17864}
     17865@article{Enderlein2006,
     17866  author = {Enderlein, J. and Toprak, E. and Selvin, P.R.},
     17867  title = {Polariztion effect on position accuracy of fluorophore localization},
     17868  journal = {Optics Express},
     17869  year = {2006},
     17870  volume = {14},
     17871  number = {18},
     17872  pages = {8112-8120}
     17873}
     17874@article{Enderlein2000,
     17875  author = {Enderlein, J.},
     17876  title = {Theoretical Study of detection of a dipole emitter through an objective with high numerical aperture},
     17877  journal = {Optics Letters},
     17878  year = {2000},
     17879  volume = {25},
     17880  number = {9},
     17881  pages = {634-636}
     17882}
     17883@article{Dahan2003,
     17884  author = {Dahan, M. and Levi, S. and Luccardini, C. and Rostaing, P. and Riveau, B. and Triller, A.},
     17885  title = {Diffusion dynamics of glycine receptors revealed by single-quantum dot tracking},
     17886  journal = {Science},
     17887  year = {2003},
     17888  volume = {302},
     17889  number = {5644},
     17890  pages = {442-445}
     17891}
     17892@misc{OberEstimationtool,
     17893  author = {Ober, R.J. and Ward, E.S.},
     17894  title = {Estimation tool},
     17895  year = {2009},
     17896  note = {University of Texas, Southwestern {http://www4.utsouthwestern.edu/wardlab}}
     17897}
     17898@article{Jin2007,
     17899  author = {Jin, S. and Haggie, P. M. and Verkman, A. S.},
     17900  title = {Single-particle tracking of membrane protein diffusion in a potential: Simulation, detection, and application to confined diffusion of CFTR Cl- channels},
     17901  journal = {Biophysical Journal},
     17902  year = {2007},
     17903  volume = {93},
     17904  number = {3},
     17905  pages = {1079-1088}
     17906}
     17907@article{Jin2007b,
     17908  author = {Jin, S. and Verkman, A. S.},
     17909  title = {Single particle tracking of complex diffusion in membranes: Simulation and detection of barrier, raft, and interaction phenomena},
     17910  journal = {Journal of Physical Chemistry B},
     17911  year = {2007},
     17912  volume = {111},
     17913  number = {14},
     17914  pages = {3625-3632}
     17915}
     17916@article{Rasnik2006,
     17917  author = {Rasnik, I. and McKinney, S. A. and Ha, T.},
     17918  title = {Nonblinking and longlasting single-molecule fluorescence imaging},
     17919  journal = {Nature Methods},
     17920  year = {2006},
     17921  volume = {3},
     17922  number = {11},
     17923  pages = {891-893}
     17924}
     17925@article{Hell1992,
     17926  author = {Hell, S. and Stelzer, E. H. K.},
     17927  title = {Fundamental Improvement of Resolution with a 4Pi-Confocal Fluorescence Microscope Using 2-Photon Excitation},
     17928  journal = {Optics Communications},
     17929  year = {1992},
     17930  volume = {93},
     17931  number = {5-6},
     17932  pages = {277-282}
     17933}
     17934@article{LidkeDS2007,
     17935  author = {Lidke, D. S. and Andrews, N. L. and Pfeiffer, J. R. and Jones, H. D. T. and Sinclair, M. B. and Haaland, D. M and Burns, A. R. and Wilson, B. S. and M., Oliver. J. and Lidke, K. A.},
     17936  title = {Exploring membrane protein dynamics by multicolor single quantum dot imaging using wide field, TIRF, and hyperspectral microscopy},
     17937  journal = {Proc. of SPIE},
     17938  year = {2007},
     17939  volume = {6448},
     17940  pages = {6448Y1-8}
     17941}
     17942@article{Warren1997,
     17943  author = {Warren, D. W. and Hackwell, J. A. and Gutierrez, D. J.},
     17944  title = {Compact prism spectrographs based on aplanatic principles},
     17945  journal = {Optical Engineering},
     17946  year = {1997},
     17947  volume = {36},
     17948  number = {4},
     17949  pages = {1174-1182}
     17950}
     17951@article{Schlessinger2002,
     17952  author = {Schlessinger, J.},
     17953  title = {Ligand-induced, receptor-mediated dimerization and activation of EGF receptor},
     17954  journal = {Cell},
     17955  year = {2002},
     17956  volume = {110},
     17957  number = {6},
     17958  pages = {669-72}
     17959}
     17960@article{Arndt-Jovin2006,
     17961  author = {Arndt-Jovin, D. J. and Lopez-Quintela, M. A and Lidke, D. S. and Rodr\'{i}guez, M. J. and Santos, F. M. and Lidke, K. A. and Hagen, G. M. and Jovin, T. M.},
     17962  title = {In vivo cell imaging with semiconductor quantum dots and noble-metal nanodots},
     17963  journal = {Proc. of SPIE},
     17964  year = {2006},
     17965  volume = {6096, 60960P}
     17966}
     17967@article{Ehrensperger2007,
     17968  author = {Ehrensperger, M. V. and Hanus, C. and Vannier, C. and Triller, A. and Dahan, M.},
     17969  title = {Multiple association states between glycine receptors and gephyrin identified by SPT analysis},
     17970  journal = {Biophysical Journal},
     17971  year = {2007},
     17972  volume = {92},
     17973  number = {10},
     17974  pages = {3706-3718}
     17975}
     17976@article{Gilfillan2006,
     17977  author = {Gilfillan, A. M. and Tkaczyk, C.},
     17978  title = {Integrated signalling pathways for mast-cell activation},
     17979  journal = {Nat Rev Immunol},
     17980  year = {2006},
     17981  volume = {6},
     17982  number = {3},
     17983  pages = {218-30}
     17984}
     17985@article{Eggeling2009,
     17986  author = {Eggeling, C. and Ringemann, C. and Medda, R. and
     17987Schwarzmann, G. and Sandhoff, K. and Polyakova, S. and Belov, V.N. and Hein, B. and Middendorff, C. v. and {Sch\"onle}, A. and  Hell, S. W.},
     17988  title = {Direct observation of the nanoscale dynamics of membrane lipids in a living cell},
     17989  journal = {Nature},
     17990  year = {2009},
     17991  volume = {457},
     17992  pages = {1159-1163}
     17993}
     17994@article{Huang2008a,
     17995  author = {Huang, B. and Jones, S.A. and Brandenburg, B. and Zhuang, X.},
     17996  title = {Whole-cell 3D STORM reveals interactions between
     17997cellular structures with nanometer-scale resolution},
     17998  journal = {Nature Methods},
     17999  year = {2008},
     18000  volume = {5},
     18001  number = {12},
     18002  pages = {1047-1053}
     18003}
     18004@article{Hess2007,
     18005  author = {Hess, S.T. and Gould, T.J. and Gudhetl, M.V. and Maas, S.A. and Mills, K.D. and Zimmerberg, J.},
     18006  title = {Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories},
     18007  journal = {Proceedings of the National Academy of Sciences},
     18008  year = {2007},
     18009  volume = {104},
     18010  number = {44},
     18011  pages = {17370-17375}
     18012}
     18013@article{Gustafsson2005,
     18014  author = {Gustafsson, M. G. L.},
     18015  title = {Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution},
     18016  journal = {Proceedings of the National Academy of Sciences of the United States of America},
     18017  year = {2005},
     18018  volume = {102},
     18019  number = {37},
     18020  pages = {13081-13086}
     18021}
     18022@article{Egner2007,
     18023  author = {Egner, A. and Geisler, C. and Von Middendorff, C. and Bock, H. and Wenzel, D. and Medda, R. and Andresen, M. and Stiel, A. C. and Jakobs, S. and Eggeling, C. and Schonle, A. and Hell, S. W.},
     18024  title = {Fluorescence nanoscopy in whole cells by asynchronous localization of photoswitching emitters},
     18025  journal = {Biophysical Journal},
     18026  year = {2007},
     18027  volume = {93},
     18028  number = {9},
     18029  pages = {3285-3290}
     18030}
     18031@article{Bates2005,
     18032  author = {Bates, M. and Blosser, T. R. and Zhuang, X. W.},
     18033  title = {Short-range spectroscopic ruler based on a single-molecule optical switch},
     18034  journal = {Physical Review Letters},
     18035  year = {2005},
     18036  volume = {94},
     18037  number = {10},
     18038  pages = {-}
     18039}
     18040@article{Sinclair2006,
     18041  author = {Sinclair, M. B. and Haaland, D. M. and Timlin, J. A. and Jones, H. D.},
     18042  title = {Hyperspectral confocal microscope},
     18043  journal = {Appl Opt},
     18044  year = {2006},
     18045  volume = {45},
     18046  number = {24},
     18047  pages = {6283-91}
     18048}
     18049@article{Sinclair2004,
     18050  author = {Sinclair, M. B. and Timlin, J. A. and Haaland, D. M. and Werner-Washburne, M.},
     18051  title = {Design, construction, characterization, and application of a hyperspectral microarray scanner},
     18052  journal = {Applied Optics},
     18053  year = {2004},
     18054  volume = {43},
     18055  number = {10},
     18056  pages = {2079-2088}
     18057}
     18058@article{Sark2002,
     18059  author = {Sark, W. G. J. H. M. van and Frederix, P. L. T. M. and Bol, A. A. and Gerritsen, H. C. and Meijerink, A.},
     18060  title = {Blueing, bleaching, and blinking of single CdSe/ZnS quantum dots},
     18061  journal = {Chemphyschem},
     18062  year = {2002},
     18063  volume = {3},
     18064  number = {10},
     18065  pages = {871-879}
     18066}
     18067@book{Haaland2003,
     18068  author = {Haaland, D. M. and Timlin, J. A. and Sinclair, M. B. and Van Benthem, M. H. and Martinez, M. J. and Aragon, A. D. and Werner-Washburne, M.},
     18069  title = {Multivariate curve resolution for hyperspectral image analysis: applications to microarray technology},
     18070  year = {2003},
     18071  volume = {4959},
     18072  publisher = {International Society for Optical Engineering},
     18073  series = {In Spectral Imaging: Instrumentation, Applications, and Analysis},
     18074  address = {San Jose, CA.}
     18075}
     18076@article{Geisler2007,
     18077  author = {Geisler, C. and Schonle, A. and von Middendorff, C. and Bock, H. and Eggeling, C. and Egner, A. and Hell, S. W.},
     18078  title = {Resolution of lambda/10 in fluorescence microscopy using fast single molecule photo-switching},
     18079  journal = {Applied Physics a-Materials Science and Processing},
     18080  year = {2007},
     18081  volume = {88},
     18082  number = {2},
     18083  pages = {223-226}
     18084}
     18085@article{Metzger1992,
     18086  author = {Metzger, H.},
     18087  title = {Transmembrane signalling: the joy of aggregation},
     18088  journal = {Journal of Immunology },
     18089  year = {1992},
     18090  volume = {149},
     18091  pages = {1477-1487}
     18092}
     18093@article{Hanser2004,
     18094  author = {Hanser, B. M. and Gustafsson, M. G. L. and Agard, D. A. and Sedat, J. W.},
     18095  title = {Phase-retrieved pupil functions in wide-field fluorescence microscopy},
     18096  journal = {Journal of Microscopy-Oxford},
     18097  year = {2004},
     18098  volume = {216},
     18099  pages = {32-48}
     18100}
     18101@book{Bharucha-Reid1960,
     18102  author = {Bharucha-Reid, A. T},
     18103  title = {Elements of the Theory of Markov Processes and Their Applications},
     18104  year = {1960},
     18105  publisher = {New York: McGraw-Hill}
     18106}
     18107@article{Herring2010,
     18108  author = {Herring, R.A. and Saitoh, K. and Tanaka, N. and Tanji, T.},
     18109  title = {Coherent electron interference from amorphous
     18110TEM specimens},
     18111  journal = {Journal of Electron Microscopy},
     18112  year = {2010}
     18113}
     18114@article{Schmidt2008,
     18115  author = {Schmidt, R. and Wurm, C.A. and Jakobs, S. and Engelhardt, J. and Egner, A. and Hell, S.W.},
     18116  title = {Spherical nanosized focal spots unravels the interior of cells},
     18117  journal = {Nature Methods},
     18118  year = {2008},
     18119  volume = {5},
     18120  number = {6},
     18121  pages = {539-544}
     18122}
     18123@article{Kner2009,
     18124  author = {Kner, P. and Chhun, B.B. and Griffs, E.R. and Winoto, L. and Gustafsson, M.G.L.},
     18125  title = {Super-resolution video microscopy of live cells by structured illumination},
     18126  journal = {Nature Methods},
     18127  year = {2009},
     18128  volume = {6},
     18129  number = {5},
     18130  pages = {339-344}
     18131}
     18132@article{Heintzmann2009,
     18133  author = {Heintzmann, R. and Gustafsson, M.G.L.},
     18134  title = {Subdiffraction resolution in continuous samples},
     18135  journal = {Nature Photonics},
     18136  year = {2009},
     18137  volume = {3},
     18138  pages = {362-364}
     18139}
     18140@article{Boulanger2010,
     18141  author = {Boulanger, J. and Kervrann, C. and Bouthemy, P. and Elbau, P. and Sibarita, J.-B. and Salamero, J.},
     18142  title = {Patch-Based Nonlocal Functional for Denoising
     18143Fluorescence Microscopy Image Sequences},
     18144  journal = {IEEE Transactions on Medical Image Processing},
     18145  year = {2010},
     18146  volume = {29},
     18147  number = {2},
     18148  pages = {442-454}
     18149}
     18150@article{Carlton2010,
     18151  author = {Carlton, P.M. and Boulanger, J. and Kervrann, C. and Sibarita, J.-B. and Salamero, J. and Gordon-Messer, S. and Bressan, D. and Haber, J.E. and Haase, S. and Shao, L. and Winoto, L. and Matsuda, A. and Kner, P. and Uzawa, S. and Gustafsson, M.G.F. and Kam, Z. and Agard, D.A. and Sedat, J.W.},
     18152  title = {Fast live simultaneous multiwavelength four-dimensional optical microscopy},
     18153  journal = {Proceedings of the National Academy of Sciences},
     18154  year = {2010}
     18155}
     18156@article{Grabenbauer2005,
     18157  author = {Grabenbauer, M. and Geerts, W.J. and Fernadez-Rodriguez, J. and Hoenger, A. and Koster, A.J. and Nilsson, T.},
     18158  title = {Correlative microscopy and electron tomography of GFP through photooxidation},
     18159  journal = {Nature Methods},
     18160  year = {2005},
     18161  volume = {2},
     18162  pages = {857-862}
     18163}
     18164@article{Folling2008,
     18165  author = {{F\"olling}, J. and Bossi, M. and Bock, H. and Medda, R. and Wurm, C.A. and Hein, B. and Jacobs, S. and Eggeling, C. and Hell, S.W.},
     18166  title = {Fluorescence nanoscopy by ground-state depletion and single-molecule return},
     18167  journal = {Nature Methods},
     18168  year = {2008},
     18169  volume = {5},
     18170  pages = {943-945}
     18171}
     18172@article{Agronskaia2008,
     18173  author = {Agronskaia, A.V. and Valtentijn, J.A. and Driel, L.F. van and Schneidenberg, C. and Humbel, B.M. and Henegouwen, P. and Verkleij, A.J. and Koster, A.J. and Gerritsen, H.C.},
     18174  title = {Integrated fluorescence and transmission electron microscopy},
     18175  journal = {Journal of Structural Biology},
     18176  year = {2008},
     18177  volume = {164},
     18178  number = {2},
     18179  pages = {183-189}
     18180}
     18181@article{Aguet2009,
     18182  author = {Aguet, F. and Geissbuhler, S. and Marki, I. and Lasser, T. and Unser, M.},
     18183  title = {Super-resolution orientation estimation and localization of fluorescent dipoles using 3-D steerable filters},
     18184  journal = {Optics Express},
     18185  year = {2009},
     18186  volume = {17},
     18187  number = {8},
     18188  pages = {6829}
     18189}
     18190@article{Giepmans2005,
     18191  author = {Giepmans, B.N. and Deerinck, T.J. and Smarr, B.L. and Jones, Y.Z. and Ellisman, M.H.},
     18192  title = {Correlated light and electron microscopic imaging of multiple endogenous proteins using quantum dots},
     18193  journal = {Nature Methods},
     18194  year = {2005},
     18195  volume = {10},
     18196  pages = {743-749}
     18197}
     18198@article{Stallinga2004,
     18199  author = {Stallinga, S.},
     18200  title = {Light distribution close to focus in biaxially       birefringent media
     18201},
     18202  journal = {Journal of the Optical Society of America A},
     18203  year = {2004},
     18204  volume = {21},
     18205  number = {9},
     18206  pages = {1785-1788}
     18207}
     18208@article{Wang2010,
     18209  author = {Wang, C. and Gao, X. and Su, X.},
     18210  title = {In vitro and in vivo imaging with quantum dots },
     18211  journal = {Analytical and Bioanalytical Chemistry },
     18212  year = {2010},
     18213  volume = {397},
     18214  number = {4},
     18215  pages = {1397-1415}
     18216}
     18217@article{Jamieson2007,
     18218  author = {Jamieson, T. and Bakhshi, R. and Petrova, D. and Pocock, R. and Imani, M. and Seifalian, A.M.},
     18219  title = {Biological applications of quantum dots },
     18220  journal = {Biomaterials},
     18221  year = {2007},
     18222  volume = {28},
     18223  number = {31},
     18224  pages = {4717-4732}
     18225}
     18226@article{Abraham2009,
     18227  author = {Abraham, A.V. and Ram, S. and Chao, J. and Ward, E.S. and Ober, R.J.},
     18228  title = {Quantitative study of single molecule location estimation techniques },
     18229  journal = {Optics Express},
     18230  year = {2009},
     18231  volume = {17},
     18232  number = {26},
     18233  pages = {23352-23373}
     18234}
     18235@article{Chao2009,
     18236  author = {Chao, J. and Ram, S. and Ward, E.S. and Ober, R.J.},
     18237  title = {A comparative study of high resolution microscopy imaging modalities using a three-dimensional resolution measure},
     18238  journal = {Optics Express},
     18239  year = {2009},
     18240  volume = {17},
     18241  number = {26},
     18242  pages = {24377-24401}
     18243}
     18244@article{Ram2008,
     18245  author = {Ram, S. and Prabhar, P. and Chao, J. and Ward, E.S. and Ober, R.J.},
     18246  title = {High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells },
     18247  journal = {Biophysical Journal},
     18248  year = {2008},
     18249  volume = {95},
     18250  number = {12},
     18251  pages = {6025-6043}
     18252}
     18253@article{Wilson1997,
     18254  author = {Wilson, T. and Juskaitis, R. and Higdon, P.D.},
     18255  title = {The imaging of dielectric point scatterers in conventional and confocal polarisation microscopes},
     18256  journal = {Optics Communications},
     18257  year = {1997},
     18258  volume = {141},
     18259  pages = {298-313}
     18260}
     18261@article{Stallinga2010,
     18262  author = {Stallinga, S. and Rieger, B.},
     18263  title = {Accuracy of the {Gaussian} Point Spread Function model in 2D localization microscopy
     18264},
     18265  journal = {Optics Express},
     18266  year = {2010},
     18267  note = {accepted}
     18268}
     18269@article{Barrett1995,
     18270  author = {Barrett, H. H. and Denny, J.L. and Wagner, R.F. and Myers, K.J.},
     18271  title = {Objective assessment of image quality. II. Fisher information, Fourier crosstalk, and
     18272figures of merit for task performance},
     18273  journal = {Journal of the Optical Society of America A},
     18274  year = {1995},
     18275  volume = {12},
     18276  number = {5},
     18277  pages = {834-853}
     18278}
     18279@article{Foreman2007,
     18280  author = {Foreman, M.R. and Sherif, S.S. and {T\"or\"ok}, P.},
     18281  title = {Photon statistics in single molecule
     18282orientational imaging},
     18283  journal = {Optics Express},
     18284  year = {2007},
     18285  volume = {15},
     18286  number = {21},
     18287  pages = {13597-13606}
     18288}
     18289@article{Haeberle2003,
     18290  author = {{Haeberl\'e}, O. and Ammar, M. and Furukawa, H. and Tenjimbayashi, K. and {T\"or\"ok}, P.},
     18291  title = {Point spread function of optical microscopes
     18292imaging through stratified media},
     18293  journal = {Optics Express},
     18294  year = {2003},
     18295  volume = {11},
     18296  number = {22},
     18297  pages = {2964-2969}
     18298}
     18299@article{McGuire1994,
     18300  author = {McGuire, J.P. Jr. and Chipman, R.A.},
     18301  title = {Polarization aberrations.
     183021. Rotationally symmetric optical systems},
     18303  journal = {Applied Optics},
     18304  year = {1994},
     18305  volume = {33},
     18306  number = {22},
     18307  pages = {5080-5100}
     18308}
     18309@article{McGuire1994a,
     18310  author = {McGuire, J.P. Jr. and Chipman, R.A.},
     18311  title = {Polarization aberrations.
     183122. Tilted and decentered optical systems},
     18313  journal = {Applied Optics},
     18314  year = {1994},
     18315  volume = {33},
     18316  number = {22},
     18317  pages = {5101-5107}
     18318}
     18319@article{Muller2005,
     18320  author = {{M\"uller}, S.P. and Abbey, C.K. and Rybicki, F.J. and Moore, S.C. and Kijewski, M.F.},
     18321  title = {Measures of performance in nonlinear estimation
     18322tasks: prediction of estimation performance at low signal-to-noise ratio},
     18323  journal = {Physics in Medicine and Biology},
     18324  year = {2005},
     18325  volume = {50},
     18326  pages = {3697-3715}
     18327}
     18328@article{Ji2010,
     18329  author = {Ji, N. and Milkie, D.E. and Betzig, E.},
     18330  title = {Adaptive optics via pupil segmentation for
     18331high-resolution imaging in biological tissues},
     18332  journal = {Nature Methods},
     18333  year = {2010},
     18334  volume = {7},
     18335  number = {2},
     18336  pages = {141-150}
     18337}
     18338@article{Wombacher2010,
     18339  author = {Wormbacher, R. and Heidbreder, M. and Linde, S. van de and Sheetz, M.P. and Heilemann, M. and Cornish, V.W. and Sauer, M.},
     18340  title = {Live-cell super-resolution imaging with trimethoprim conjugates},
     18341  journal = {Nature Methods},
     18342  year = {2010},
     18343  volume = {7},
     18344  number = {9},
     18345  pages = {717-722}
     18346}
     18347@article{Henriques2010,
     18348  author = {Henriques, R. and Lelek, M. and Fornasiero, E.F. and Valtorta, F. and Zimmer, C. and Mhlanga, M.M.},
     18349  title = {Quick{PALM}: 3D real-time photoactivation nanoscopy image processing in {ImageJ}},
     18350  journal = {Nature Methods},
     18351  year = {2010},
     18352  volume = {7},
     18353  number = {5},
     18354  pages = {339-340}
     18355}
     18356@article{Dertinger2009,
     18357  author = {Dertinger, T. and Colyer, R. and Iyer, G. and Weiss, S. and Enderlein, J.},
     18358  title = {Fast, background-free, {3D} super-resolution optical fluctuation imaging {(SOFI)}},
     18359  journal = {Proceedings of the National Academy of Sciences},
     18360  year = {2009},
     18361  volume = {106},
     18362  number = {52},
     18363  pages = {22287-22292}
     18364}
     18365@article{Dertinger2010,
     18366  author = {Dertinger, T. and Colyer, R. and Vogel, R. and  Enderlein, J. and Weiss, S.},
     18367  title = {Achieving increased resolution and more pixels
     18368with Superresolution Optical Fluctuation
     18369Imaging {(SOFI)}},
     18370  journal = {Optics Express},
     18371  year = {2010},
     18372  volume = {18},
     18373  number = {18},
     18374  pages = {18875-11885}
     18375}
     18376@article{Landau1967,
     18377  author = {Landau, H.},
     18378  title = {Necessary  density conditions for sampling and interpolation of certain entire function},
     18379  journal = {Acta Mathematica},
     18380  year = {1967},
     18381  volume = {117},
     18382  number = {1},
     18383  pages = {37-52}
     18384}
Note: See TracChangeset for help on using the changeset viewer.