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    r313 r314  
    1478414784  pages = {121-160},
    1478514785  journal = {Advances in Imaging and Electron Physics},
    14786   volume = {153},
    14787   author = {Krivanek, O.L. and Delby, N. and keyse, R.J. and Murfitt, M.F. and Own, C.S. and Szilagyi, Z.S.}
    14788 }
    14789 @article{Nellist2000,
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    14797 }
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    14799   year = {2009},
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    14802   journal = {Nanotechnology},
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    14805 }
    14806 @article{Boisset1997,
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    14813 }
    14814 @article{Vincent1994,
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    14821 }
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    14829 }
    14830 @article{Cowley2001,
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    14835   journal = {Journal of Electron Microscopy},
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    14838 }
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    14846 }
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    14867 }
    14868 @article{James1999,
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    14875 }
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    14899 }
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    14910   title = {{DNA}-dependent divalent cation binding in the nucleosome core particle},
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    14929 }
    14930 @article{Chu2008,
    14931   year = {2008},
    14932   title = {Surface exciton polaritons in individual Au nanoparticles in the far-ultraviolet spectral regime},
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    14937 }
    14938 @article{Duscher2001,
    14939   year = {2001},
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    14942   journal = {Ultramicroscopy},
    14943   volume = {86},
    14944   author = {Duscher, G. and Buczko, R. and Pennycook, S.J. and Pantelides, S.T.}
    14945 }
    14946 @article{Hytch1998,
    14947   year = {1998},
    14948   title = {Quantitative measurement of displacement and strain fields from HREM micrographs},
    14949   pages = {131-146},
    14950   journal = {Ultramicroscopy},
    14951   volume = {74},
    14952   author = {Hytch, M.J. and Snoeck, E. and Kilaas, R.}
    14953 }
    14954 @article{Lazar2006,
    14955   year = {2006},
    14956   title = {Enhancement of resolution in core-loss and low-loss spectroscopy in a monochromated microscope},
    14957   pages = {1091-1103},
    14958   journal = {Ultramicroscopy},
    14959   volume = {106},
    14960   author = {Lazar, S. and Botton, G.A. and Zandbergen, H.W.}
    14961 }
    14962 @article{Bullogh1999,
    14963   year = {1999},
    14964   title = {The Projection Structure of the Low Temperature K Intermediate of the Bacteriorhodopsin Photocycle D etermined by Electron Diffraction},
    14965   pages = {1663-1671},
    14966   journal = {Journal of Molecular Biology},
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    14968   author = {Bullough, P.A. and Henderson, R.}
    14969 }
    14970 @article{Rohde2005,
    14971   year = {2005},
    14972   title = {Estimating intensity variance due to noise in registered images: Applications to diffusion tensor {MRI}},
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    14974   journal = {NeuroImage},
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    14976   author = {Rohde, G.K. and Barnett, A.S. and Basser, P.J. and Pierpaoli, C.}
    14977 }
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    14980   title = {Electron holography - basics and applications},
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    14984 }
    14985 @article{HohmannMarriott2009,
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    14995   year = {2009},
    14996   title = {STEM imaging of 47-pm-separated atomic columns by a spherical aberration-corrected electron microscope with a 300-kV cold field emission gun},
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    15009 }
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    15025 }
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    15033 }
    15034 @article{Akase2010,
    15035   year = {2010},
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    15042   year = {2009},
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    15050   year = {1987},
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    15074   year = {1987},
    15075   title = {{EMS} - {A} software package for electron diffration analysis and {HREM} image simulation in material science},
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    15080 }
    15081 @inproceedings{Pennycook2003a,
    15082   series = {AIP Conference},
    15083   year = {2003},
    15084   title = {Transmission Electron Microscopy: Overview and Challenges},
    15085   booktitle = {Characterization and Metrology for ULSI Technology},
    15086   pages = {627},
    15087   volume = {683},
    15088   publisher = {American Institute of Physics},
    15089   author = {Pennycook, S.J. and Lupini, A.R. and Borisevich, A. and Varela, M. and Peng, Y. and Nellist, P.D. and Duscher, G. and Buczko, R. and Pantelides, S.T.}
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    15092   year = {1961},
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    15094   pages = {458-460},
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    15099 @article{Philippsen2007,
    15100   year = {2007},
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    15116   year = {2006},
    15117   title = {First experimental test of a new monochromated and aberration-corrected 200 {kV} field-emission scanning transmission electron microscope},
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    15124   year = {2006},
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    15132   year = {2008},
    15133   title = {STEM tomography for thick biological specimens},
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    15140   number = {PR-TN-2004/00608},
    15141   year = {2004},
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    15144   address = { Eindhoven, The Netherlands},
    15145   institution = {Philips Research},
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    15149   year = {2004},
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    15151   pages = {730-734},
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    15199   year = {2009},
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    15201   pages = {1-4},
    15202   journal = {Nature Chemistry},
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    15205 @article{Hill2008,
    15206   year = {2008},
    15207   title = {The ALIS He ion source and its application to high resolution microscopy},
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    15214   year = {2007},
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    15222   year = {2007},
    15223   title = {EMAN2: An extensible image processing suite for electron microscopy},
    15224   pages = {38-46},
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    15226   volume = {157},
    15227   author = {Tang, G. and Peng, L. and Baldwin, P.R. and Mann, D.S. and Jiang, W. and Rees, I. and Ludtke, S.J.}
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    15229 @article{Krivanek2009,
    15230   year = {2009},
    15231   title = {High-energy resolution monochromator for aberration-corrected scanning transmission electron microscopy/electron energy-loss spectroscopy},
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    15237 @article{Krivanek2008,
    15238   year = {2008},
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    15245 @article{Gunawan2009,
    15246   year = {2009},
    15247   title = {Locating La atoms in epitaxial $Bi_{3.25}La_{0.75}Ti_3O_{12}$ films through atomic resolution electron energy loss spectroscopy mapping},
    15248   pages = {192902},
    15249   journal = {Applied Physics Letters},
    15250   volume = {95},
    15251   author = {Gunawan, L. and Lazar, S. and Gautreau, O. and Narnagea, C. and Pignolet, A. and Botton, G.A.}
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    18907 @inproceedings{Rieger2011,
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    18914   editor = {Heyden, A. and Kahl, F.},
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    18963 }
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    19148   year = {2011},
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    19152   editor = {Heyden, A. and Kahl, F.},
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    19159   year = {2011},
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    19162   booktitle = {Image Analysis},
    19163   pages = {424-434},
    19164   editor = {Heyden, A. and Kahl, F.},
    19165   address = {Heidelberg},
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    19170   series = {Lecture Notes in Computer Science 6688},
    19171   year = {2011},
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    19174   booktitle = {Image Analysis},
    19175   pages = {36-47},
    19176   editor = {Heyden, A. and Kahl, F.},
    19177   address = {Heidelberg},
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    19182   series = {Lecture Notes in Computer Science 6688},
    19183   year = {2011},
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    19186   booktitle = {Image Analysis},
    19187   pages = {238-249},
    19188   editor = {Heyden, A. and Kahl, F.},
    19189   address = {Heidelberg},
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    19194   series = {Lecture Notes in Computer Science 6688},
    19195   year = {2011},
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    19198   booktitle = {Image Analysis},
    19199   pages = {176-185},
    19200   editor = {Heyden, A. and Kahl, F.},
    19201   address = {Heidelberg},
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    19206   series = {Lecture Notes in Computer Science 6688},
    19207   year = {2011},
    19208   title = {Representing Local Structure Using Tensors {II}},
    19209   booktitle = {Image Analysis},
    19210   pages = {545-556},
    19211   editor = {Heyden, A. and Kahl, F.},
    19212   address = {Heidelberg},
    19213   publisher = {Springer},
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    19217   series = {Lecture Notes in Computer Science 6688},
    19218   year = {2011},
    19219   title = {Real-Time Line Detection Using Accelerated
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    19221   booktitle = {Image Analysis},
    19222   pages = {784-793},
    19223   editor = {Heyden, A. and Kahl, F.},
    19224   address = {Heidelberg},
    19225   publisher = {Springer},
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    19230   year = {2011},
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    19233   booktitle = {Image Analysis},
    19234   pages = {414-423},
    19235   editor = {Heyden, A. and Kahl, F.},
    19236   address = {Heidelberg},
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    19242   year = {2011},
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    19246   editor = {Heyden, A. and Kahl, F.},
    19247   address = {Heidelberg},
    19248   publisher = {Springer},
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