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    97679767}
    97689768@inproceedings{Kalitzin1997,
    9769   series = {Lecture Notes in Computer Science},
    9770   month = {July},
    9771   year = {1997},
    9772   title = {Invertible Orientation Bundles on 2D Scalar Images},
    9773   booktitle = {Proceedings of the First International Conference on Scale-Space Theory in Computer Vision},
    9774   pages = {77--88},
    9775   publisher = {Springer-Verlag},
    9776   author = {Kalitzin, S.N. and ter Haar Romeny, B.M. and Viergever, M.A.}
    9777 }
    9778 @article{Koenderink1992,
    9779   number = {6},
    9780   month = {June},
    9781   year = {1992},
    9782   title = {Generic Neighborhood Operators},
    9783   pages = {597--605},
    9784   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9785   volume = {14},
    9786   author = {Koenderink, J.J. and Doorn, A.J. van}
    9787 }
    9788 @article{Koenderink1990,
    9789   year = {1990},
    9790   title = {Receptive Field Families},
    9791   pages = {291--297},
    9792   journal = {Biological Cybernetics},
    9793   volume = {63},
    9794   author = {Koenderink, J.J. and Doorn, A.J. van}
    9795 }
    9796 @inproceedings{Haussecker1996,
    9797   series = {Proceedings in Artificial Intelligence 3},
    9798   month = {November 18--19},
    9799   year = {1996},
    9800   title = {A Tensor Approach for Local Structure Analysis in Multi-Dimensional Images},
    9801   booktitle = {Proceedings 3D Image Analysis and Synthesis},
    9802   pages = {171--178},
    9803   editor = {Girod, B. and Niemann, H. and Seidel, H.-P.},
    9804   author = {{Hau\ss ecker}, H. and {J\"ahne}, B.},
    9805   organization = {{Universit\"at} Erlangen-{N\"urnberg}}
    9806 }
    9807 @article{Kalitzin1999,
    9808   number = {2/3},
    9809   year = {1999},
    9810   title = {Invertible Apertured Orientation filters in Image Analysis},
    9811   pages = {145--158},
    9812   journal = {International Journal of Computer Vision},
    9813   volume = {31},
    9814   author = {Kalitzin, S.N. and Haar Romeny, B. ter and Viergever, M.A.}
    9815 }
    9816 @inproceedings{Haussecker1997,
    9817   series = {Informatik Aktuell},
    9818   month = {September 15-17},
    9819   year = {1997},
    9820   title = {A tensor approach for precise computation of dense displacement vector fields},
    9821   booktitle = {Proc. Mustererkennung 1997 (Braunschweig, Germany)},
    9822   pages = {199--208},
    9823   editor = {Paulus, E. and Wahl, F.M.},
    9824   publisher = {Springer},
    9825   author = {{Hau\ss ecker}, H. and {J\"ahne}, B.}
    9826 }
    9827 @inproceedings{Vliet1993a,
    9828   year = {1993},
    9829   title = {Curvature and Bending Energy in Digitized 2D and 3D Images},
    9830   booktitle = {8th Scandinavian Conference on Image Analysis, {Troms\o } Norway},
    9831   pages = {1403--1410},
    9832   author = {Vliet, L.J. van and Verbeek, P.W.}
    9833 }
    9834 @article{Cam1994,
    9835   number = {3},
    9836   year = {1994},
    9837   title = {Conformational Analysis of a 139 Base-pair {DNA} Fragment Containing a Single-stranded Break and Its Interaction with {Human Poly(ADP-ribose)} Polymerase},
    9838   pages = {1062-1071},
    9839   journal = {Journal of Molecular Biology},
    9840   volume = {235},
    9841   author = {Cam, E. le and Fack, F. and Menissier-de Murcia, J. and Cognet, J.A.H. and Barbin, A. and Sarantoglou, V. and Revet, B. and Delain, E. and Murcia, G. de}
    9842 }
    9843 @article{Digman2005,
    9844   year = {2005},
    9845   title = {Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure},
    9846   journal = {Biophysical Journal - Biophysical Letters},
    9847   author = {Digman, M.A. and Sengupta, P. and Wiseman, P.W. and Brown, C.M. and Howritz, A.R. and Grattown, E.}
    9848 }
    9849 @article{Bangham1996a,
    9850   number = {5},
    9851   year = {1996},
    9852   title = {Scale-Space From Nonlinear Filters},
    9853   pages = {520--528},
    9854   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9855   volume = {18},
    9856   author = {Bangham, J.A. and Ling, P.D. and Harvey, R.}
    9857 }
    9858 @article{Talbot2000,
    9859   month = {December},
    9860   year = {2000},
    9861   title = {Image Analysis of Insulation Mineral Fibres},
    9862   pages = {251--268},
    9863   journal = {Journal of Microscopy},
    9864   volume = {200, Pt 3},
    9865   author = {Talbot, H. and Lee, T. and Jeulin, D. and Hanton, D. and Hobbs, L.W.}
    9866 }
    9867 @article{Dietrich2004,
    9868   number = {14},
    9869   year = {2004},
    9870   title = {Nanoarrays: A Method for Performing Enzymatic Assays},
    9871   pages = {4112-4117},
    9872   journal = {Analytical Chemistry},
    9873   volume = {76},
    9874   author = {Dietrich, H.R.C. and Knoll, J. and Doel, L.R. van den and Dedem, G.W.K. van and Daran-Lapujade, P.A.S. and Vliet, L.J. van and Moerman, R. and Pronk, J.R. and Young, I.T.}
    9875 }
    9876 @inproceedings{Laptev2003,
    9877   series = {Lecture Notes on Computer Science },
    9878   year = {2003},
    9879   title = {Interest point detection and scale-selection in space-time},
    9880   booktitle = {Proceedings of the fourth Int. Conf. on Scale Space},
    9881   pages = {372-387},
    9882   editor = {Griffin, L.D. and Lillholm, M.},
    9883   volume = {2695},
    9884   address = {Isle of Skye, United Kingdom},
    9885   author = {Laptev, I. and Lindeberg, T.}
    9886 }
    9887 @article{Thomson1982,
    9888   number = {9},
    9889   month = {September},
    9890   year = {1982},
    9891   title = {Spectrum Estimation and Harmonic Analysis},
    9892   pages = {1055--1096},
    9893   journal = {Proceedings of the IEEE},
    9894   volume = {70},
    9895   author = {Thomson, D.J.}
    9896 }
    9897 @misc{Dorst1999a,
    9898   year = {1999},
    9899   title = {{Clifford} Algebra: a Practical Tool for Efficient Geometrical Representation},
    9900   note = {Tutorial presentation},
    9901   author = {Dorst, L.}
    9902 }
    9903 @phdthesis{Hansen1995,
    9904   year = {1995},
    9905   title = {Spatial Statistics for Network Structures in Processed Milk},
    9906   address = {Copenhagen, Denmark},
    9907   school = {The Royal Veterinary and Agricultural University Copenhagen},
    9908   author = {Hansen, M.B.}
    9909 }
    9910 @article{Hansen1999,
    9911   number = {1},
    9912   year = {1999},
    9913   title = {First Contact Distributions for Spatial Patterns: Regularity and Estimation},
    9914   pages = {15--33},
    9915   journal = {Advances in Applied Probability},
    9916   volume = {31},
    9917   author = {Hansen, M.B. and Baddeley, A.J. and Gill, R.D.}
    9918 }
    9919 @article{Stockman1977,
    9920   number = {11},
    9921   year = {1977},
    9922   title = {Equivalence of {Hough} Curve Detection to Template Matching},
    9923   pages = {820--822},
    9924   journal = {Communications of the {ACM}},
    9925   volume = {20},
    9926   annote = {key_radon},
    9927   author = {Stockman, G.C. and Agrawala, A.K.}
    9928 }
    9929 @article{Li1994a,
    9930   number = {12},
    9931   year = {1994},
    9932   title = {Approximation of an Arbitrary Filter and its Recursive Implementation},
    9933   pages = {1767--1774},
    9934   journal = {Pattern Recognition},
    9935   volume = {27},
    9936   author = {Li, B.C. and Ma, S.D.}
    9937 }
    9938 @article{Endres1997,
    9939   number = {1},
    9940   month = {January/February},
    9941   year = {1997},
    9942   title = {Incorporating Pore Geometry and Fluid Pressure Communication into Modeling the Elastic Behavior of Porous Rocks},
    9943   pages = {106--117},
    9944   journal = {Geophysics},
    9945   volume = {62},
    9946   author = {Endres, A.L. and Knight, R.J.}
    9947 }
    9948 @article{Hansen1997,
    9949   number = {3},
    9950   year = {1997},
    9951   title = {Understanding the {Hough} Transform: {Hough} Cell Support and its Utilization},
    9952   pages = {205--218},
    9953   journal = {Image and Vision Computing},
    9954   volume = {15},
    9955   author = {Hansen, K. and Andersen, J.D.}
    9956 }
    9957 @article{Maxwell1870,
    9958   number = {269},
    9959   year = {1870},
    9960   title = {On Hills and Dales},
    9961   pages = {421--427},
    9962   journal = {The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science},
    9963   volume = {40},
    9964   author = {Maxwell, J.C.}
    9965 }
    9966 @article{Qian2000,
    9967   year = {2000},
    9968   title = {Single-Particle Tracking: Brownian Dynamics of Viscoelastic Materials},
    9969   pages = {137-143},
    9970   journal = {Biophysical Journal},
    9971   volume = {79},
    9972   author = {Qian, H. and Elson, E.L.}
    9973 }
    9974 @article{Jain2000,
    9975   number = {1},
    9976   year = {2000},
    9977   title = {Statistical Pattern Recognition: A Review},
    9978   pages = {4--37},
    9979   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    9980   volume = {22},
    9981   author = {Jain, A.K. and Duin, R.P.W. and Mao, J.}
    9982 }
    9983 @article{Watson1953,
    9984   number = {4356},
    9985   month = {April},
    9986   year = {1953},
    9987   title = {Molecular Structure of Nucleic Acids},
    9988   pages = {737--738},
    9989   journal = {Nature},
    9990   volume = {171},
    9991   author = {Watson, J.D. and Crick, F.H.C.}
    9992 }
    9993 @inproceedings{Knutsson1989kort,
    9994   year = {1989},
    9995   title = {Representing Local Structure Using Tensors },
    9996   booktitle = {SCIA'89},
    9997   pages = {244--251},
    9998   author = {Knutsson, H.}
    9999 }
    10000 @article{Chadoeuf2000,
    10001   month = {October},
    10002   year = {2000},
    10003   title = {Testing Local Dependence of Spatial Structures on Images},
    10004   pages = {32--41},
    10005   journal = {Journal of Microscopy},
    10006   volume = {200, Pt 1},
    10007   author = {Chadoeuf, J. and Brix, A. and Pierret, A. and Allard, D.}
    10008 }
    10009 @article{Brock2003,
    10010   year = {2003},
    10011   title = {Quantitative image analysis of cellular protein translocation induced by magnetic microspheres: Application to the EGF receptor},
    10012   pages = {1-11},
    10013   journal = {Cytometry Part A},
    10014   volume = {52A},
    10015   author = {Brock, R. and Jovin, T.M. }
    10016 }
    10017 @article{Costes2004,
    10018   year = {2004},
    10019   title = {Automatic and Quantitative Measurement of Protein-Protein Colocalization in Live Cells},
    10020   pages = {3993-4003},
    10021   journal = {Biophysical Journal},
    10022   volume = {86},
    10023   author = {Costes, S.V. and Daelemans, D. and Cho, E.H. and Dobbin, Z. and Pavlakis, G. and Lockett, S.}
    10024 }
    10025 @article{Zhou2003,
    10026   year = {2003},
    10027   title = {Cytoplasmic Ployhedrosis Virus Structure at 8 by Electron Cryomicroscopy: Structural Basis of Capsid Stability and {mRNA} Processing Regulation},
    10028   pages = {651-663},
    10029   journal = {Structure},
    10030   volume = {1},
    10031   author = {Zhou, Z.H. and Zhang, H. and Jakana, J. and Lu, X.-Y. and Zhang, J.-Q.}
    10032 }
    10033 @article{Zhou2000,
    10034   year = {2000},
    10035   title = {Seeing the Herpesvirus Capsid at 8.5},
    10036   pages = {877-880},
    10037   journal = {Science},
    10038   volume = {288},
    10039   author = {Zhou, Z.H. and Dougherty, M. Jakana, J. and He, J. and Rixon, F.J. and Chiu, W.}
    10040 }
    10041 @article{Zhou2001,
    10042   number = {26},
    10043   year = {2001},
    10044   title = {The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complexes},
    10045   pages = {14802-14807},
    10046   journal = {Proceedings of the National Academy of Sciences of the United States of America},
    10047   volume = {98},
    10048   author = {Zhou, Z.H. and McCarthy, D.B. and O'Conor, C.M. and Reed, L.J. and Stoops, J.K.}
    10049 }
    10050 @article{Medintz2004,
    10051   year = {2004},
    10052   title = {Reversible Modulation of Quantum Dot Photoluminescence Using a Protein- Bound Photochromic Fluorescence Resonance Energy Transfer Acceptor},
    10053   pages = {30-31},
    10054   journal = {Journal of the American Chemical Society},
    10055   volume = {126},
    10056   author = {Medintz, I.L. and Trammell, S.A. and Mattoussi, H. and Mauro, J.M.}
    10057 }
    10058 @article{Cherny2005,
    10059   number = {3},
    10060   year = {2005},
    10061   title = {Sequestering of p53 into {DNA}-protein filaments revealed by electron microscopy},
    10062   pages = {261-271},
    10063   journal = {Biophysical Chemistry},
    10064   volume = {114},
    10065   author = {Cherny, D.I. and Brzdov4, M. and Pale\v{c}ek, J. and Pale\v{c}ek, E. and Jovin, T.M.}
    10066 }
    10067 @article{Cherny2004,
    10068   number = {4},
    10069   year = {2004},
    10070   title = {Double-stranded {DNA} stimulates the fibrillation of $\alpha$-synuclein in vitro and is associated with the mature fibrils: An electron microscopy study},
    10071   pages = {929-938},
    10072   journal = {Journal of Molecular Biology},
    10073   volume = {344},
    10074   author = {Cherny, D.I. and Hoyer, W. and Subramaniam, V. and Jovin, T.M.}
    10075 }
    10076 @article{Cherny2001,
    10077   number = {2},
    10078   year = {2001},
    10079   title = {Electron and scanning force microscopy studies of alterations in supercoiled {DNA} tertiary structure},
    10080   pages = {295-307},
    10081   journal = {Journal of Molecular Biology},
    10082   volume = {313},
    10083   author = {Cherny, D.I. and Jovin, T.M.}
    10084 }
    10085 @article{Comer1999,
    10086   number = {3},
    10087   year = {1999},
    10088   title = {Morphological Operations for Color Image Processing},
    10089   pages = {279-189},
    10090   journal = {Journal of Electronic Imaging},
    10091   volume = {8},
    10092   author = {Comer, M. L. and Delp, E. J.}
    10093 }
    10094 @inproceedings{Farnebaeck2000,
    10095   month = {September},
    10096   year = {2000},
    10097   title = {Fast and {A}ccurate {M}otion {E}stimation using {O}rientation {T}ensors and {P}arametric {M}otion {M}odels},
    10098   booktitle = {Proceedings of 15th International Conference on Pattern Recognition},
    10099   pages = {135--139},
    10100   volume = {1},
    10101   address = {Barcelona, Spain},
    10102   annote = {Also as Technical Report LiTH-ISY-R-2254},
    10103   author = {G. {Farneb\"ack}},
    10104   organization = {IAPR}
    10105 }
    10106 @inproceedings{Farnebaeck2003,
    10107   series = {LNCS 2749},
    10108   month = {June 29 -July 2},
    10109   year = {2003},
    10110   title = {Two-Frame Motion Estimation Based on Polynomial Expansion},
    10111   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    10112   pages = {363-370},
    10113   editor = {{Big\"un}, J. and Gustavsson, T.},
    10114   address = {Berlin},
    10115   publisher = {Springer-Verlag},
    10116   author = {{Farneb\"ack}, G.}
    10117 }
    10118 @article{Freitag2005,
    10119   year = {2005},
    10120   title = {Breaking the spherical and chromatic aberration barrier in transmission electron microscopy},
    10121   pages = {209-214},
    10122   journal = {Ultramicroscopy},
    10123   volume = {102},
    10124   author = {Freitag, B. and Kujawa, S. and Mul, P.M. and Ringnalda, J. and Tiemeijer, P.C.}
    10125 }
    10126 @article{Lidke2005,
    10127   number = {9},
    10128   year = {2005},
    10129   title = {The role of photon statistics in fluorescence anisotropy imaging},
    10130   pages = {1237-1245},
    10131   journal = {IEEE Transactions on Image Processing},
    10132   volume = {14},
    10133   author = {Lidke, K.A. and Rieger, B. and Lidke, D.S. and Jovin, T.M.}
    10134 }
    10135 @article{Lidke2003,
    10136   number = {5},
    10137   year = {2003},
    10138   title = {Imaging molecular interactions in cells by dynamic and static fluorescence anisotropy ({rFLIM} and {emFRET})},
    10139   pages = {1020-1027},
    10140   journal = {Biochemical Society Transactions},
    10141   volume = {31},
    10142   author = {Lidke, D.S. and Nagy, P. and Barisas, B.G. and Heintzmann, R. and Post, J.N. and Lidke, K.A. and Clayton, A.H.A. and Arndt-Jovin, D.J. and Jovin, T.M.}
    10143 }
    10144 @article{Lidke2004,
    10145   number = {2},
    10146   year = {2004},
    10147   title = {Quantum dot ligands provide new insights into {erbB/HER} receptor-mediated signal transduction},
    10148   pages = {198-203},
    10149   journal = {Nature Biotechnology},
    10150   volume = {22},
    10151   author = {Lidke, D.S. and Nagy, P. and Heintzmann, R. and Arndt-Jovin, D.J. and Post, J.N. and Grecco, H. and Jares-Erijman, E.A. and Jovin, T.M.}
    10152 }
    10153 @article{Dubuc2001a,
    10154   number = {1--2},
    10155   year = {2001},
    10156   title = {Complexity, Confusion, and Perceptual Grouping. Part {II}: Mapping Complexity},
    10157   pages = {83--116},
    10158   journal = {Journal of Mathematical Imaging and Vision},
    10159   volume = {15},
    10160   author = {Dubuc, B. and Zucker, S.W.}
    10161 }
    10162 @article{Larkin2001a,
    10163   number = {8},
    10164   month = {August},
    10165   year = {2001},
    10166   title = {Natural Demodulation of Two-Dimensional Fringe Patterns. {II}. Stationary Phase Analysis of the Spiral Phase Quadrature Transform},
    10167   pages = {1871--1881},
    10168   journal = {Journal of the Optical Society of America A},
    10169   volume = {18},
    10170   author = {Larkin, K.G.}
    10171 }
    10172 @article{Salden1998,
    10173   year = {1998},
    10174   title = {Differential Integral Geometry of Linear Scale-Space},
    10175   pages = {5--27},
    10176   journal = {Journal of Mathematical Imaging and Vision},
    10177   volume = {9},
    10178   author = {Salden, A.H. and ter Haar Romeny, B.M. and Viergever, M.A. }
    10179 }
    10180 @misc{Lehar1994,
    10181   year = {1994},
    10182   title = {Harmonic Resonance in Visual Perception Suggests a Novel Form of Neural Communication},
    10183   note = {Rejected. Department of Cognitive and Neural Systems, Center for Adaptive Systems, Boston, U.S.A.},
    10184   author = {Lehar, S.}
    10185 }
    10186 @techreport{Luengo2003d,
    10187   month = {May},
    10188   year = {2003},
    10189   title = {Underestimation of the Radius in the Radon Transform for Circles and Spheres},
    10190   note = {Technical Report PH-2003-02},
    10191   institution = {Pattern Recognition Group, Delft University of Technology},
    10192   author = {Luengo Hendriks, C.L. and Ginkel, M. van and Vliet, L.J. van}
    10193 }
    10194 @inproceedings{Luengo2003c,
    10195   series = {Lecture Notes on Computer Science},
    10196   year = {2003},
    10197   title = {Discrete Morphology with Line Structuring Elements},
    10198   booktitle = {Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, {\footnotesize CAIP} 2003},
    10199   pages = {722-729},
    10200   editor = {Petkov, N. and Westenberg, M.A.},
    10201   volume = {2756},
    10202   address = {Berlin},
    10203   publisher = {Springer-Verlag},
    10204   author = {Luengo Hendriks, C.L. and Vliet, L.J. van}
    10205 }
    10206 @article{Stark1996,
    10207   year = {1996},
    10208   title = {Electron radiation damage to protein crystals of bacteriorhodopsin at different temperatures},
    10209   pages = {75-70},
    10210   journal = {Ultramicroscopy},
    10211   volume = {63},
    10212   author = {Stark, H. and Zemlin, F. and Boettcher, C.}
    10213 }
    10214 @inproceedings{Luengo2003b,
    10215   series = {Lecture Notes on Computer Science},
    10216   year = {2003},
    10217   title = {The Generalized Radon Transform: Sampling and Memory Considerations},
    10218   booktitle = {Computer Analysis of Images and Patterns, Proceedings of the Tenth International Conference, {\footnotesize CAIP} 2003},
    10219   pages = {681-688},
    10220   editor = {Petkov, N. and Westenberg, M.A.},
    10221   volume = {2756},
    10222   address = {Berlin},
    10223   publisher = {Springer-Verlag},
    10224   author = {Luengo Hendriks, C.L. and Ginkel, M. van and Verbeek, P.W. and Vliet, L.J. van}
    10225 }
    10226 @article{Cariolaro1998,
    10227   number = {12},
    10228   month = {December},
    10229   year = {1998},
    10230   title = {A Unified Framework for the Fractional {Fourier} Transform},
    10231   pages = {3206--3219},
    10232   journal = {IEEE Transactions on Signal Processing},
    10233   volume = {46},
    10234   author = {Cariolaro, G. and Erseghe, T. and Kraniauskas, P. and Laurenti, N.}
    10235 }
    10236 @article{Chen1977,
    10237   number = {9},
    10238   month = {September},
    10239   year = {1977},
    10240   title = {A Fast Computational Algorithm for the Discrete Cosine Transform},
    10241   pages = {1004--1009},
    10242   journal = {IEEE Transactions on Communications},
    10243   volume = {25},
    10244   annote = {key_fft},
    10245   author = {Chen, W.-H. and Harrison Smith, C. and Fralick, S.C.}
    10246 }
    10247 @article{Beckers1990,
    10248   year = {1990},
    10249   title = {The Probability of a Random Straight Line in Two and Three Dimensions},
    10250   pages = {233--240},
    10251   journal = {Pattern Recognition Letters},
    10252   volume = {11},
    10253   author = {Beckers, A.L.D. and Smeulders, A.W.M.}
    10254 }
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