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    r779 r780  
    38593859  editor = {Titus, H.C. and Waks, A.},
    38603860  volume = {2173},
    3861   address = {San Jose, CA},
    3862   author = {Mullikien, J.C. and Vliet, L.J. van and Netten, H. and Boddeke, F.R. and Feltz, G.W. van der and Young, I.T.}
    3863 }
    3864 @techreport{Verbeek1982,
    3865   year = {1982},
    3866   title = {Space Invariant Image Operations Constructed from Local Direction Detection and Shift Invariant Filters},
    3867   address = {Pattern Recognition Group},
    3868   institution = {Delft University of Technology},
    3869   author = {Verbeek, P.W.}
    3870 }
    3871 @inproceedings{Verbeek1986,
    3872   year = {1986},
    3873   title = {Collision Avoidance and Path Finding through Constrained Distance Transformation in Robot State Space},
    3874   booktitle = {Preprints Intelligent Autonomous Systems (Amsterdam, December 8-11)},
    3875   pages = {634--641},
    3876   author = {Verbeek, P.W. and Dorst, L. and Verwer, B.J.H. and Groen, F.C.A.}
    3877 }
    3878 @article{Verbeek1985,
    3879   year = {1985},
    3880   title = {A Class of Sampling-error Free Measures in Oversampled Band-Limited Images},
    3881   pages = {287--292},
    3882   journal = {Pattern Recognition Letters},
    3883   volume = {3},
    3884   author = {Verbeek, P.W.}
    3885 }
    3886 @article{Verbeek1988,
    3887   number = {3},
    3888   year = {1988},
    3889   title = {Low-level Image Processing by Max-Min Filters},
    3890   pages = {249--258},
    3891   journal = {Signal Processing},
    3892   volume = {15},
    3893   author = {Verbeek, P.W. and Vrooman, H.A. and Vliet, L.J. van}
    3894 }
    3895 @techreport{Verbeek2000,
    3896   year = {2000},
    3897   title = {Subspaces of Generalised Projection Operators},
    3898   address = {Pattern Recognition Group},
    3899   institution = {Delft University of Technology},
    3900   author = {Verbeek, P.W.}
    3901 }
    3902 @inproceedings{Verbeek2003,
    3903   series = {LNCS 2756},
    3904   month = {August 25-27},
    3905   year = {2003},
    3906   title = {The {D}-dimensional inverse vector-gradient operator and its application for scale free image enhancement},
    3907   booktitle = {10th International Conference on Computer Analysis of Images and Patterns (Groningen, The Netherlands) },
    3908   pages = {738-745},
    3909   editor = {Petkov, N. and Westenberg, M.A.},
    3910   address = {Berlin},
    3911   publisher = {Springer},
    3912   author = {Verbeek, P.W. and Dijk, J.}
    3913 }
    3914 @article{Verbeek1989,
    3915   year = {1989},
    3916   title = {{2-D} Adaptive Smoothing by {3-D} Distance Transformation},
    3917   pages = {53--65},
    3918   journal = {Pattern Recognition Letters},
    3919   volume = {9},
    3920   author = {Verbeek, P.W. and Verwer, B.J.H.}
    3921 }
    3922 @article{Manders1996,
    3923   number = {1},
    3924   year = {1996},
    3925   title = {Largest contour segmentation: A tool for the localization of spots in confocal images},
    3926   pages = {15-21},
    3927   journal = {Cytometry Part A},
    3928   volume = {23},
    3929   author = {Manders, E.M.M. and Hoebe, R. and Strackee, J. and Vossepoel, A.M. and Aten, J.A.}
    3930 }
    3931 @phdthesis{Boomgaard1992,
    3932   year = {1992},
    3933   title = {Mathematical Morphology: Extensions Towards Computer Vision},
    3934   address = {Amsterdam},
    3935   school = {University of Amsterdam},
    3936   author = {Boomgaard, R. van den}
    3937 }
    3938 @article{Boomgaard1999,
    3939   year = {1999},
    3940   title = {Affine invariant deformation curves a tool for shape characterization},
    3941   pages = {375--380},
    3942   journal = {Image and Vision Computing},
    3943   volume = {17},
    3944   author = {Boomgaard, R. van den}
    3945 }
    3946 @article{Bos1992,
    3947   number = {1},
    3948   year = {1992},
    3949   title = {Ultimate resolution: a mathematical framework},
    3950   pages = {298-306},
    3951   journal = {Ultramicroscopy},
    3952   volume = {47},
    3953   author = {Bos, A. van den}
    3954 }
    3955 @article{Boomgaard1994,
    3956   number = {11},
    3957   year = {1994},
    3958   title = {The morphological structure of images: The differential equations of morphological scale-space},
    3959   pages = {1101--1113},
    3960   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    3961   volume = {16},
    3962   author = {Boomgaard, R. van den and Smeulders, A.}
    3963 }
    3964 @article{Manders1993,
    3965   number = {3},
    3966   year = {1993},
    3967   title = {Measurement of co-localization of objects in dual-colour confocal images},
    3968   pages = {375-382},
    3969   journal = {Journal of Microscopy},
    3970   volume = {169},
    3971   author = {Manders, E.M.M. and Verbeek, F.J. and Aten, J.A.}
    3972 }
    3973 @misc{Dijkstra1982,
    3974   month = {August 11},
    3975   year = {1982},
    3976   title = {Why Numbering Should Start at Zero},
    3977   howpublished = {PDF file},
    3978   author = {Dijkstra, E.W.}
    3979 }
    3980 @misc{DelftXXXX,
    3981   title = {Magische Vierkanten},
    3982   howpublished = {uit ``Spelen met Puzzels''},
    3983   author = {Delft, P. van and Botermans,J.}
    3984 }
    3985 @article{Mayall1990,
    3986   number = {1},
    3987   year = {1990},
    3988   title = {Experience with the {Athena} Semi-Automated Karyotyping System},
    3989   pages = {59--72},
    3990   journal = {Cytometry},
    3991   volume = {11},
    3992   author = {Mayall, B.H. and Tucker, J.D. and Christensen, M.L. and Vliet, L.J. van and Young, I.T.}
    3993 }
    3994 @article{Schoenberg1930,
    3995   year = {1930},
    3996   title = {{\"Uber} Variationsvermindernde Lineare Transformationen},
    3997   pages = {321--328},
    3998   journal = {Mathematische Zeitschrift},
    3999   volume = {32},
    4000   author = {Schoenberg, I.}
    4001 }
    4002 @book{Rade1999,
    4003   edition = {4th},
    4004   year = {1999},
    4005   title = {Mathematical Handbook for Science and Engineering},
    4006   publisher = {Springer Verlag},
    4007   author = {{R\aa de}, L. and Westergren, B.}
    4008 }
    4009 @article{Blostein1989,
    4010   number = {12},
    4011   month = {December},
    4012   year = {1989},
    4013   title = {Shape from Texture: Integrating Texture-Element Extraction and Surface Estimation},
    4014   pages = {1233--1251},
    4015   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4016   volume = {11},
    4017   author = {Blostein, D. and Ahuja, N.}
    4018 }
    4019 @inproceedings{Hartley1992,
    4020   month = {15--18 June},
    4021   year = {1992},
    4022   title = {Stereo from Uncalibrated Cameras},
    4023   booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition - CVPR'92},
    4024   pages = {761--764},
    4025   address = {Urbana-Champaign, USA},
    4026   author = {Hartley, R. and Gupta, R. and Chang, T.}
    4027 }
    4028 @article{Patwardhan2002,
    4029   number = {1},
    4030   year = {2002},
    4031   title = {Coherent, non-planar illumination of a defocused specimen: consequences for transmission electron microscopy},
    4032   pages = {4-12},
    4033   journal = {Optik},
    4034   volume = {13},
    4035   author = {Patwardhan, A.}
    4036 }
    4037 @article{Kybic2002a,
    4038   number = {8},
    4039   year = {2002},
    4040   title = {Generalized sampling: A variational approach - Part {II}: Applications},
    4041   pages = {1977--1985},
    4042   journal = {IEEE Transactions on Signal Processing},
    4043   volume = {50},
    4044   author = {Kybic, J. and Blu, T. and Unser, M.}
    4045 }
    4046 @inproceedings{Cooper2003,
    4047   series = {LNCS 2749},
    4048   month = {June 29 -July 2},
    4049   year = {2003},
    4050   title = {Estimating Motion in Ultrasound Images of the Small Bowel: Optical Flow without Image Structure},
    4051   booktitle = {SCIA'03, Proceedings of the 13th Scandinavian Conference on Image Analysis ({G\"oteborg}, Sweden) },
    4052   pages = {571-578},
    4053   editor = {{Big\"un}, J. and Gustavsson, T.},
    4054   address = {Berlin},
    4055   publisher = {Springer-Verlag},
    4056   author = {Cooper, D.H. and Madsen, B.R. and Graham, J.}
    4057 }
    4058 @article{Weijer2001,
    4059   number = {9},
    4060   year = {2001},
    4061   title = {Curvature estimation in oriented patterns using curvilinear models applied to gradient vector fields},
    4062   pages = {1035 -1042},
    4063   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4064   volume = {23},
    4065   author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van}
    4066 }
    4067 @article{Weijer2005,
    4068   number = {4},
    4069   year = {2005},
    4070   title = {Edge and Corner Detection by Photometric Quasi-Invariants},
    4071   pages = {625-630},
    4072   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4073   volume = {27},
    4074   author = {Weijer, J. van de and Vliet, L.J. van and Verbeek, P.W. and Ginkel, M. van }
    4075 }
    4076 @article{Unsalan2001,
    4077   number = {1},
    4078   year = {2001},
    4079   title = {Conversions between Parametric and Implicit Forms Using Polar/Spherical Coordinate Representations},
    4080   pages = {1--25},
    4081   journal = {Computer Vision and Image Understanding},
    4082   volume = {81},
    4083   author = {{\"Unsalan}, C. and {Er\c{c}il}, A.}
    4084 }
    4085 @article{Aguado2000a,
    4086   number = {1995},
    4087   year = {2000},
    4088   title = {On the Intimate Relationship between the Principle of Duality and the {Hough} Transform},
    4089   pages = {503--526},
    4090   journal = {Proceedings of the Royal Society London A},
    4091   volume = {456},
    4092   author = {Aguado, A.S. and Montiel, E. and Nixon, M.S.}
    4093 }
    4094 @article{Unser1999,
    4095   month = {November},
    4096   year = {1999},
    4097   title = {Splines: A Perfect Fit for Signal and Image Processing},
    4098   pages = {22--38},
    4099   journal = {IEEE Signal Processing Magazine},
    4100   author = {Unser, Michael}
    4101 }
    4102 @article{Haussecker2001,
    4103   number = {6},
    4104   month = {June},
    4105   year = {2001},
    4106   title = {Computing Optical Flow with Physical Models of Brightness Variation},
    4107   pages = {661--673},
    4108   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4109   volume = {23},
    4110   author = {Haussecker, H.W. and Fleet, D.J.}
    4111 }
    4112 @article{Unser1995,
    4113   number = {10},
    4114   year = {1995},
    4115   title = {Convolution-based interpolation for fast, high-quality rotation of images},
    4116   pages = {1371-1381},
    4117   journal = {IEEE Transactions on Image Processing},
    4118   volume = {4},
    4119   author = {Unser, M. and Thevenaz, P. and Yaroslavsky, L.}
    4120 }
    4121 @article{Duncan1991,
    4122   number = {3},
    4123   year = {1991},
    4124   title = {A bending energy model for measurement of cardiac shape deformaty},
    4125   pages = {307--319},
    4126   journal = {IEEE Transactions on Medical Imaging},
    4127   volume = {10},
    4128   author = {Duncan, J.S. and Lee, F.A. and Smeulders, A.W.M. and Zaret, B.L.}
    4129 }
    4130 @article{Unser1991,
    4131   number = {3},
    4132   month = {March},
    4133   year = {1991},
    4134   title = {Fast {B}-Spline Transform for Continuous Image Representation and Interpolation},
    4135   pages = {277--285},
    4136   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
    4137   volume = {13},
    4138   author = {Unser, M. and Aldroubi, A. and Eden, M.}
    4139 }
    4140 @article{Whitaker1993,
    4141   number = {1},
    4142   month = {January},
    4143   year = {1993},
    4144   title = {A Multi-Scale Approach to Nonuniform Diffusion},
    4145   pages = {99--110},
    4146   journal = {CVGIP Image Understanding},
    4147   volume = {57},
    4148   author = {Whitaker, R.T. and Pizer, S.M.}
    4149 }
    4150 @article{Unser1993,
    4151   number = {2},
    4152   month = {February},
    4153   year = {1993},
    4154   title = {{B}-Spline Signal Processing: Part {I} - Theory},
    4155   pages = {821--833},
    4156   journal = {IEEE Transactions on Signal Processing},
    4157   volume = {41},
    4158   author = {Unser, Michael and Aldroubi, Akram and Eden, Murray}
    4159 }
    4160 @article{Vries2004,
    4161   number = {4},
    4162   year = {2004},
    4163   title = {Patterned Electroplating of Micrometer Scale Magnetic Structures on Glass Substrates},
    4164   pages = {391-395},
    4165   journal = {Journal of Microelectromechanical Systems},
    4166   volume = {13},
    4167   author = {Vries, A.H.B. de and Kanger, J.S. and Krenn, B.E. and Driel, R. van}
    4168 }
    4169 @article{Vries2005,
    4170   number = {3},
    4171   year = {2005},
    4172   title = {Micro Magnetic Tweezers for Nanomanipulation Inside Live Cells},
    4173   pages = {2137-2144},
    4174   journal = {Biophysical Journal},
    4175   volume = {88},
    4176   author = {Vries, A.H.B. de and Krenn, B.E. and Driel, R. van and Kanger, J.S.}
    4177 }
    4178 @article{Sheppard1988,
    4179   number = {2},
    4180   year = {1988},
    4181   title = {Super-resolution in confocal microscopy},
    4182   pages = {53-54},
    4183   journal = {Optik},
    4184   volume = {80},
    4185   author = {Sheppard, C.J.R.}
    4186 }
    4187 @article{Kippenberg2011,
    4188   year = {2011},
    4189   title = {Microresonator-Based Optical Frequency Combs},
    4190   pages = {555-560},
    4191   journal = {Science},
    4192   volume = {332},
    4193   author = {Kippenberg, T.J. and Holzwarth, R. and Diddams, S.A.}
    4194 }
    4195 @misc{DIPlib,
    4196   year = {1995},
    4197   title = {{DIPlib}: a scientific image processing library},
    4198   note = {Pattern Recognition Group, Department of Applied Physics, Delft University of Technology, {\tt http://www.qi.tnw.tudelft.nl/DIPlib}},
    4199   author = {Ginkel, M. van and Kempen, G.M.P. van and Luengo Hendriks, C.L. and Rieger, B. and Vliet, L.J. van}
    4200 }
    4201 @article{Michielsen2000,
    4202   year = {2000},
    4203   title = {Morphological Image Analysis},
    4204   pages = {94--103},
    4205   journal = {Computer Physics Communications},
    4206   volume = {132},
    4207   author = {Michielsen, K. and De Raedt, H.}
    4208 }
    4209 @article{Heertje1997,
    4210   number = {2},
    4211   year = {1997},
    4212   title = {Vet Zonder Vet},
    4213   pages = {30--40},
    4214   journal = {Natuur en Techniek},
    4215   volume = {65},
    4216   author = {Heertje, I.}
    4217 }
    4218 @inproceedings{Tomasi1998a,
    4219   month = {January 4-7},
    4220   year = {1988},
    4221   title = {Bilateral Filtering for Gray and Color Images},
    4222   booktitle = { Proceedings of the Sixth International Conference on Computer Vision, ICCV'98 (Bombay, India)},
    4223   pages = {836-846},
    4224   publisher = {Narosa Publishing House},
    4225   author = {Tomasi, C. and Manduchi, R.}
    4226 }
    4227 @book{Jain1989,
    4228   year = {1989},
    4229   title = {Fundamentals of Digital Image Processing},
    4230   publisher = {Prentice-Hall},
    4231   author = {Jain, A.K.}
    4232 }
    4233 @article{Thompson2002,
    4234   year = {2002},
    4235   title = {Precise Nanometer Localization Analysis for Individual Fluorescent Probes},
    4236   pages = {2775-2783},
    4237   journal = {Biophysical Journal},
    4238   volume = {82},
    4239   author = {Thompson, R.E. and Larson, D.R. and Webb, W.W.}
    4240 }
    4241 @techreport{Pizer1990,
    4242   year = {1990},
    4243   title = {Toward Interactive Object Definition in 3D Scalar Images},
    4244   note = {TR90-034},
    4245   institution = {University of North Carolina, U.S.A.},
    4246   author = {Pizer, S.M. and Cullip, T.J. and Fredericksen, R.E.}
    4247 }
    4248 @article{Taton2001,
    4249   year = {2001},
    4250   title = {Two-color labeling of oligonucleotide arrays via size-selctive scattering of nanoparticles},
    4251   pages = {5164-5165},
    4252   journal = {Journal of the American Chemical Society},
    4253   volume = {123},
    4254   author = {Taton, T.A. and Mirkin, C.A. and Lestinger, R.L.}
    4255 }
    4256 @article{Orr1993,
    4257   number = {1},
    4258   month = {January},
    4259   year = {1993},
    4260   title = {The Order of Computation for Finite Discrete Gabor Transforms},
    4261   pages = {122--130},
    4262   journal = {IEEE Transactions on Signal Processing},
    4263   volume = {41},
    4264   author = {Orr, R.S.}
    4265 }
    4266 @article{Marfurt1998,
    4267   number = {4},
    4268   month = {July-August},
    4269   year = {1998},
    4270   title = {3-D Seismic Attributes using a Semblance-based coherency algorithm},
    4271   pages = {1150--1165},
    4272   journal = {Geophysics},
    4273   volume = {63},
    4274   author = {Marfurt, K.J. and Kirlin, R.L. and Farmer, S.L. and Bahorich, M.S.}
    4275 }
    4276 @inproceedings{Witkin1983,
    4277   month = {October},
    4278   year = {1983},
    4279   title = {Scale Space Filtering},
    4280   booktitle = {Proceedings of the International Conference on Artificial Intelligence},
    4281   pages = {1019--1023},
    4282   address = {Karlsruhe, Germany},
    4283   author = {Witkin, A.}
    4284 }
    4285 @article{Doel2001,
    4286   number = {25},
    4287   year = {2001},
    4288   title = {Temporal phase unwrapping algorithm for dynamic interference pattern analysis in interference-contrast microscopy},
    4289   pages = {4487--4500},
    4290   journal = {Applied Optics},
    4291   volume = {40},
    4292   author = {Doel, L.R. van den and Vliet, L.J. van}
    4293 }
    4294 @inproceedings{Zucker1999,
    4295   month = {June 7-11},
    4296   year = {1999},
    4297   title = {Complexity and Confusion in Computational Vision},
    4298   booktitle = {SCIA'99 the 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland)},
    4299   pages = {1--10},
    4300   author = {Zucker, S.W.}
    4301 }
    4302 @article{HelOr1998,
    4303   year = {1998},
    4304   title = {Canonical Decomposition of Steerable Functions},
    4305   pages = {83--95},
    4306   journal = {Journal of Mathematical Imaging and Vision},
    4307   volume = {9},
    4308   author = {Hel-Or, Y. and Teo, P.C.}
    4309 }
    4310 @phdthesis{Doel2002,
    4311   year = {2002},
    4312   title = {Quantitative Microscopic Techniques for Monitoring Dynamic Processes in Microarrays},
    4313   address = {Delft, The Netherlands},
    4314   school = {Delft University of Technology},
    4315   author = {Doel, L.R. van den}
    4316 }
    4317 @article{Fredrich1997,
    4318   number = {3-4},
    4319   year = {1997},
    4320   title = {Statistical Characterization of the Three-dimensional Microgeometry of Porous Media and Correlation with Macroscopic Transport Properties},
    4321   pages = {Paper No. 85},
    4322   journal = {Int. J. Roch Mech. \& Min. Sci.},
    4323   volume = {34},
    4324   author = {Fredrich, J.T. and Lindquist, W.B.}
    4325 }
    4326 @article{Fredrich1999,
    4327   number = {7},
    4328   year = {1999},
    4329   title = {3D Imaging of Porous Media using Laser Scanning Confocal Microscopy with Application to Microscale Transport Processes},
    4330   pages = {551--561},
    4331   journal = {Physics and Chemistry of the Earth (A)},
    4332   volume = {24},
    4333   author = {Fredrich, J.T.}
    4334 }
    4335 @book{Duda2001,
    4336   edition = {second},
    4337   year = {2001},
    4338   title = {Pattern Classification},
    4339   publisher = {John Wiley \& Sons},
    4340   author = {Duda, R.O. and Hart, P.E. and Stork, D.G.}
    4341 }
    4342 @article{Fredrich1995,
    4343   month = {April},
    4344   year = {1995},
    4345   title = {Imaging the Pore Structure of Geomaterials},
    4346   pages = {276--279},
    4347   journal = {Science},
    4348   volume = {268},
    4349   author = {Fredrich, J.T. and {Men\'endez}, B. and Wong, T.F.}
    4350 }
    4351 @article{Whitehouse1974a,
    4352   year = {1974},
    4353   title = {Scanning Electron Microscope Studies of Trabecular Bone in the Proximal End of the Human Femur},
    4354   pages = {417--444},
    4355   journal = {J. Anatomy},
    4356   volume = {118},
    4357   author = {Whitehouse, W.J. and Dyson, E.D.}
    4358 }
    4359 @inproceedings{Beucher1982,
    4360   year = {1982},
    4361   title = {Watersheds of Functions and Picture Segmentation},
    4362   booktitle = {IEEE International Conference on Acoustics, Speech, and Signal Processing},
    4363   pages = {1928-1931},
    4364   author = {Beucher, S.}
    4365 }
    4366 @article{Booth2000,
    4367   number = {1},
    4368   year = {2000},
    4369   title = {Strategies for the compensation of specimen-induced spherical aberration in confocal microscopy of skin},
    4370   pages = {68-74},
    4371   journal = {Journal of Microscopy},
    4372   volume = {200},
    4373   author = {Booth, M.J. and Wilson, T.}
    4374 }
    4375 @article{Redon1998,
    4376   month = {September},
    4377   year = {1998},
    4378   title = {Assessment of Fibre Orientation in Reinforced Concrete using {Fourier} Image Transform},
    4379   pages = {258--265},
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    4917   booktitle = {International Conference on Systems, Man and Cybernetics},
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    4919   volume = {3},
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    4921   organization = {IEEE}
    4922 }
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    4925   year = {1997},
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    4927   booktitle = {Algebraic Frames for the Perception-Action Cycle (AFPAC 1997)},
    4928   editor = {Sommer, G. and Koenderink, J.J.},
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    4931   publisher = {Springer-Verlag},
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    4943 }
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    4945   year = {1995},
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    4950 }
    4951 @mastersthesis{Brink1999,
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    5000 }
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    5960 }
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    6132   address = {Uppsala, Sweden},
    6133   school = {Swedish University of Agricultural Science},
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    6135 }
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    6140   publisher = {Tagungsband Bremen},
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    6142 }
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    6202 }
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    6358   author = {Verbeek, P.W.}
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    6361   number = {2},
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    6364   title = {Morphological Grayscale Reconstruction in Image Analysis: Applications and Efficient Algorithms},
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    6366   journal = {IEEE Transactions on Image Processing},
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    6369 }
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    6375   journal = {Bioimaging},
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    6378 }
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    6384   journal = {Journal of Cell Biology},
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    6389   year = {1975},
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    6391   address = {New York},
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    6409 }
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    6423   journal = {IEEE Transactions on Image Processing},
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    6426 }
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    6428   month = {September 3-7},
    6429   year = {2000},
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    6431   booktitle = {ICPR15, Proc. 15th Int. Conference on Pattern Recognition (Barcelona, Spain)},
    6432   pages = {764--766},
    6433   editor = {Sanfeliu, A. and Villanueva, J.J. and Vanrell, M. and Alquezar, R. and Huang, T. and Serra, J. },
    6434   annote = {key_radon},
    6435   publisher = {IEEE Computer Society Press, Los Alamitos },
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    6446 @phdthesis{Freeman1992,
    6447   year = {1992},
    6448   title = {Steerable Filters and Local Analysis of Image Structure},
    6449   school = {Massachusetts Institute of Technology},
    6450   author = {Freeman, W.T.}
    6451 }
    6452 @article{Freeman1991,
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    6458   journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
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    6463   month = {May},
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    6468   author = {Lindeberg, T.}
    6469 }
    6470 @inproceedings{Lindeberg1993b,
    6471   year = {1993},
    6472   title = {Shape from texture from a multi-scale perspective},
    6473   booktitle = {Proceeding of the 4th International Conference on Computer Vision},
    6474   address = {Berlin, Germany},
    6475   author = {Lindeberg, T. and {G\aa rding}, J.}
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    7523   title = {Discrete Scale-Space Theory and the Scale-Space Primal Sketch},
    7524   school = {Royal Institute of Technology Stockholm, Sweden},
    7525   author = {Lindeberg, T.}
    7526 }
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    7536 }
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    7541   journal = {Journal of Mathematical Imaging and Vision},
    7542   volume = {3},
    7543   author = {Lindeberg, T.}
    7544 }
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    7610   booktitle = {DAGM Symposium},
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    7614 }
    7615 @techreport{Oktem2001,
    7616   year = {2001},
    7617   title = {A short overview of the {COMET} (COnstrained Maximum Entropy Tomography) methodology for solving inverse problems},
    7618   institution = {KTH, Sweden},
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    7622   year = {2000},
    7623   title = {Influence of defocus on measurements in microscope images },
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    7628 }
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    7632   publisher = {CRC Press},
    7633   author = {Poularikas (ed), A.D.}
    7634 }
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    7652   organization = {IEEE Computer Society Press}
    7653 }
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    7660   author = {Einstein, A.}
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    7699   pages = {356-362},
    7700   editor = {{Big\"un}, J. and Gustavsson, T.},
    7701   address = {Berlin},
    7702   publisher = {Springer-Verlag},
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    7704 }
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    7706   month = {July},
    7707   year = {2001},
    7708   title = {Analysing Dynamic Processes in Range Data Sequences},
    7709   address = {Heidelberg, Germany},
    7710   school = {Ruprechts-Karls-{Universit\"at} University},
    7711   author = {Spies, H.}
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    7721 }
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    7730 }
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    7860   volume = {16},
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    7863 @phdthesis{Bakker2002,
    7864   year = {2002},
    7865   title = {Image structure analysis for seismic interpretation},
    7866   address = {The Netherlands},
    7867   school = {Delft University of Technology},
    7868   author = {Bakker, P.}
    7869 }
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    7882   journal = {Journal of Mathematical Imaging and Vision},
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    7887   month = {July 9-12},
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    7890   booktitle = {ICCV'01 (Vancouver, Canada)},
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    7894   organization = {IEEE}
    7895 }
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    7912   title = {Mathematical Morphology: Extensions Towards Computer Vision},
    7913   note = {Chapter 3, Dimensional Decomposition of Structuring Functions},
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    7962   year = {2000},
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    7966   series = {Lecture Notes in Computer Science},
    7967   year = {2002},
    7968   title = {Image Features Based on a New Approach to {2D} Rotation Invariant Quadrature Filters},
    7969   booktitle = {ECCV 2002 (Copenhagen, Denmark)},
    7970   pages = {369--383},
    7971   editor = {Heyden, A. and Sparr, G. and Nielsen, M. and Johansen, P.},
    7972   volume = {2350},
    7973   publisher = {Springer Verlag},
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    7975 }
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    7982   journal = {IEEE Transactions on Pattern Recognition and Machine Intelligence},
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    7987   year = {2000},
    7988   title = {Structure Multivector for Local Analysis of Images},
    7989   booktitle = {Proc. Dagstuhl Workshop on Theoretical Foundations of Computer Vision},
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    7993   number = {12},
    7994   year = {2001},
    7995   title = {The Monogenic Signal},
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    7997   journal = {IEEE Transactions on Signal Processing},
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    8049   institution = {The Robotics Institute, Carnegie Mellon University},
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    18912 }
    18913 @inproceedings{Rieger2011,
    18914   series = {LNCS 6688},
    18915   month = {May 23-27},
    18916   year = {2011},
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    18918   booktitle = {Proceedings of the 17th Scandinavian Conference on Image Analysis, SCIA 2011},
    18919   pages = {774-783},
    18920   editor = {Heyden, A. and Kahl, F.},
    18921   address = {Heidelberg},
    18922   publisher = {Springer},
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    18924 }
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    18932 }
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    18960 }
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    18969 }
    18970 @article{Ruckstuhl2004,
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    18977   author = {Ruckstuhl, T. and Verdes, D.}
    18978 }
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    18980   number = {19},
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    19010   pages = {109-120},
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    19152 @inproceedings{Serino2011,
    19153   series = {Lecture Notes in Computer Science 6688},
    19154   year = {2011},
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    19156   booktitle = {Image Analysis},
    19157   pages = {447-456},
    19158   editor = {Heyden, A. and Kahl, F.},
    19159   address = {Heidelberg},
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    19163 @inproceedings{Schlager2011,
    19164   series = {Lecture Notes in Computer Science 6688},
    19165   year = {2011},
    19166   title = {Coherence Probe Microscopy Imaging and
    19167 Analysis for Fiber-Reinforced Polymers},
    19168   booktitle = {Image Analysis},
    19169   pages = {424-434},
    19170   editor = {Heyden, A. and Kahl, F.},
    19171   address = {Heidelberg},
    19172   publisher = {Springer},
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    19175 @inproceedings{Malmberg2011,
    19176   series = {Lecture Notes in Computer Science 6688},
    19177   year = {2011},
    19178   title = {Generalized Hard Constraints for Graph
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    19180   booktitle = {Image Analysis},
    19181   pages = {36-47},
    19182   editor = {Heyden, A. and Kahl, F.},
    19183   address = {Heidelberg},
    19184   publisher = {Springer},
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    19188   series = {Lecture Notes in Computer Science 6688},
    19189   year = {2011},
    19190   title = {Using Fourier Descriptors and Spatial Models
    19191 for Traffic Sign Recognition},
    19192   booktitle = {Image Analysis},
    19193   pages = {238-249},
    19194   editor = {Heyden, A. and Kahl, F.},
    19195   address = {Heidelberg},
    19196   publisher = {Springer},
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    19198 }
    19199 @inproceedings{Landstrom2011,
    19200   series = {Lecture Notes in Computer Science 6688},
    19201   year = {2011},
    19202   title = {Image Reconstruction by Prioritized
    19203 Incremental Normalized Convolution},
    19204   booktitle = {Image Analysis},
    19205   pages = {176-185},
    19206   editor = {Heyden, A. and Kahl, F.},
    19207   address = {Heidelberg},
    19208   publisher = {Springer},
    19209   author = {{Landstr\"om}, A. and Nellros, F. and Jonsson, H. and Thurley, M.}
    19210 }
    19211 @inproceedings{Knutsson2011,
    19212   series = {Lecture Notes in Computer Science 6688},
    19213   year = {2011},
    19214   title = {Representing Local Structure Using Tensors {II}},
    19215   booktitle = {Image Analysis},
    19216   pages = {545-556},
    19217   editor = {Heyden, A. and Kahl, F.},
    19218   address = {Heidelberg},
    19219   publisher = {Springer},
    19220   author = {Knutsson, H. and Westin, C.-F. and Andersson, M.}
    19221 }
    19222 @inproceedings{Josth2011,
    19223   series = {Lecture Notes in Computer Science 6688},
    19224   year = {2011},
    19225   title = {Real-Time Line Detection Using Accelerated
    19226 High-Resolution Hough Transform},
    19227   booktitle = {Image Analysis},
    19228   pages = {784-793},
    19229   editor = {Heyden, A. and Kahl, F.},
    19230   address = {Heidelberg},
    19231   publisher = {Springer},
    19232   author = {Josth, R. and Dubska, M. and Herout, A. and Havel, J.}
    19233 }
    19234 @inproceedings{Eklund2011,
    19235   series = {Lecture Notes in Computer Science 6688},
    19236   year = {2011},
    19237   title = {Using the Local Phase of the Magnitude of the
    19238 Local Structure Tensor for Image Registration},
    19239   booktitle = {Image Analysis},
    19240   pages = {414-423},
    19241   editor = {Heyden, A. and Kahl, F.},
    19242   address = {Heidelberg},
    19243   publisher = {Springer},
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    19245 }
    19246 @inproceedings{Astrom2011,
    19247   series = {Lecture Notes in Computer Science 6688},
    19248   year = {2011},
    19249   title = {Color Persistent Anisotropic Diffusion of Images},
    19250   booktitle = {Image Analysis},
    19251   pages = {262-272},
    19252   editor = {Heyden, A. and Kahl, F.},
    19253   address = {Heidelberg},
    19254   publisher = {Springer},
    19255   author = {{\AAstr\"om}, F. and Felsberg, M. and Lenz, R.}
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    19259   year = {2011},
    19260   title = {Multiresolution Monogenic Signal Analysis Using
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    19262   pages = {2402-2418},
    19263   journal = {IEEE TRANSACTIONS ON IMAGE PROCESSING},
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